Pregenerated sensors for RAB5A (Homo sapiens)
Ensembl gene IDs: ENSG00000144566Ensembl transcript IDs: ENST00000273047.9, ENST00000443878.1, ENST00000446547.5
Found 20 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR CCA 90 bp | CTCTTAGACCGCTTCATTTTCTCTTCACTTCCATCACCAGCACTAGCAGTTGGTGTGTATCTATGGCGGTaGTGGTGGCGGCGGCGGCGT | + |
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Preference number: 4 (lower is better) Translates to: LLDRFIFSSLPSPALAVGVYLWR*WWRRRR Trigger: ACGCCGCCGCCGCCACCACCACCGCCATAGATACAC...ACCAACTGCTAGTGCTGGTGATGGAAGTGAAGAGAAAATGAAGCGGTCTAAGAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000446547.5 |
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| CDS-3UTR GCA 90 bp | CTCTTAGACCGCTTCATTTTCTCTTCACTTCCATCACCAGCACTAGCAGTTGGTCCCGTTGGGTCTTGTTaGGCCTCGACTAGCCATGTC | + |
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Preference number: 4 (lower is better) Translates to: LLDRFIFSSLPSPALAVGPVGSC*ASTSHV Trigger: GACATGGCTAGTCGAGGCGCAACAAGACCCAACGGG...ACCAACTGCTAGTGCTGGTGATGGAAGTGAAGAGAAAATGAAGCGGTCTAAGAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000446547.5 |
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| CDS-3UTR CCA 90 bp | CTCTTAGACCGCTTCATTTTCTCTTCACTTCCATCACCAGCACTAGCAGTTGGTATGAGAGTGTATCTATaGCGGTGGTGGTGGCGGCGG | + |
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Preference number: 4 (lower is better) Translates to: LLDRFIFSSLPSPALAVGMRVYL*RWWWRR Trigger: CCGCCGCCACCACCACCGCCATAGATACACTCTCAT...ACCAACTGCTAGTGCTGGTGATGGAAGTGAAGAGAAAATGAAGCGGTCTAAGAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000446547.5 |
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| CDS-3UTR GCA 90 bp | CTCTTAGACCGCTTCATTTTCTCTTCACTTCCATCACCAGCACTAGCAGTTGGTATCTGCATAGGACTGTaGTTCCTGGAAATCTACTGC | + |
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Preference number: 4 (lower is better) Translates to: LLDRFIFSSLPSPALAVGICIGL*FLEIYC Trigger: GCAGTAGATTTCCAGGAAGCACAGTCCTATGCAGAT...ACCAACTGCTAGTGCTGGTGATGGAAGTGAAGAGAAAATGAAGCGGTCTAAGAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000446547.5 |
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| CDS-3UTR CCA 90 bp | CTCTTAGACCGCTTCATTTTCTCTTCACTTCCATCACCAGCACTAGCAGTTGGTTTTATTTCCCGTATTTaGCCCGTTGGGTCTTGTTGC | + |
|
Preference number: 4 (lower is better) Translates to: LLDRFIFSSLPSPALAVGFISRI*PVGSCC Trigger: GCAACAAGACCCAACGGGCCAAATACGGGAAATAAA...ACCAACTGCTAGTGCTGGTGATGGAAGTGAAGAGAAAATGAAGCGGTCTAAGAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000446547.5 |
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| CDS-3UTR CCA 90 bp | CTCTTAGACCGCTTCATTTTCTCTTCACTTCCATCACCAGCACTAGCAGTTGGTTCAAGACATACAGTTTaGGTTAGAAAAGCAGCTGAA | + |
|
Preference number: 4 (lower is better) Translates to: LLDRFIFSSLPSPALAVGSRHTV*VRKAAE Trigger: TTCAGCTGCTTTTCTAACCCAAACTGTATGTCTTGA...ACCAACTGCTAGTGCTGGTGATGGAAGTGAAGAGAAAATGAAGCGGTCTAAGAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000446547.5 |
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| CDS-3UTR CCA 90 bp | CTCTTAGACCGCTTCATTTTCTCTTCACTTCCATCACCAGCACTAGCAGTTGGTAAAACGTCTATTTTCTaGCTAAGAACCATCACTCTT | + |
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Preference number: 4 (lower is better) Translates to: LLDRFIFSSLPSPALAVGKTSIF*LRTITL Trigger: AAGAGTGATGGTTCTTAGCCAGAAAATAGACGTTTT...ACCAACTGCTAGTGCTGGTGATGGAAGTGAAGAGAAAATGAAGCGGTCTAAGAG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENST00000446547.5 |
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| CDS CCA 90 bp | CGTCGCTCCCTCAGTCAGTCCCCAAATCCCGGTCTCCAGAGCCCCTaGAGGATGAGTCACCAGGGCTGGCAGAACAAGACGCCGGGTTCG | + |
|
Preference number: 5 (lower is better) Translates to: RRSLSQSPNPGLQSP*RMSHQGWQNKTPGS Trigger: CGAACCCGGCGTCTTGTTCTGCCAGCCCTGGTGACTCATCCTCCAGGGGCTCTGGAGACCGGGATTTGGGGACTGACTGAGGGAGCGACG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000443878.1 |
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| CDS CCA 90 bp | CCAAATCCCGGTCTCCAGAGCCCCTGGAGGATGAGTCACCAGGGCTaGCAGAACAAGACGCCGGGTTCGATAGTTCTCTGGTCCAGGGCA | + |
|
Preference number: 5 (lower is better) Translates to: PNPGLQSPWRMSHQG*QNKTPGSIVLWSRA Trigger: TGCCCTGGACCAGAGAACTATCGAACCCGGCGTCTTGTTCTGCCAGCCCTGGTGACTCATCCTCCAGGGGCTCTGGAGACCGGGATTTGG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000443878.1 |
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| CDS GCA 90 bp | TTTCTGGAGGTAAAGAAACCTTGCTTTGACCGAGACCCCCAGGACTaGCAGGACGGAGACCAGGCGGAACCGCGGCCTCCAGTACACTTT | + |
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Preference number: 5 (lower is better) Translates to: FLEVKKPCFDRDPQD*QDGDQAEPRPPVHF Trigger: AAAGTGTACTGGAGGCCGCGGTTCCGCCTGGTCTCCGTCCTGGCAGTCCTGGGGGTCTCGGTCAAAGCAAGGTTTCTTTACCTCCAGAAA 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000443878.1 |
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| CDS-3UTR CAA 90 bp | CTCTTAGACCGCTTCATTTTCTCTTCACTTCCATCACCAGCACTAGCAGTTGGTCTGATTCCTGGTTGGTaGTGTGGGTTCGGTAAGGTC | + |
|
Preference number: 5 (lower is better) Translates to: LLDRFIFSSLPSPALAVGLIPGW*CGFGKV Trigger: GACCTTACCGAACCCACACAACCAACCAGGAATCAG...ACCAACTGCTAGTGCTGGTGATGGAAGTGAAGAGAAAATGAAGCGGTCTAAGAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000446547.5 |
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| CDS-3UTR CAA 90 bp | CTCTTAGACCGCTTCATTTTCTCTTCACTTCCATCACCAGCACTAGCAGTTGGTTTTTATTTCCCGTATTaGGCCCGTTGGGTCTTGTTG | + |
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Preference number: 5 (lower is better) Translates to: LLDRFIFSSLPSPALAVGFYFPY*ARWVLL Trigger: CAACAAGACCCAACGGGCCAAATACGGGAAATAAAA...ACCAACTGCTAGTGCTGGTGATGGAAGTGAAGAGAAAATGAAGCGGTCTAAGAG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000446547.5 |
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| CDS-3UTR CAA 90 bp | CTCTTAGACCGCTTCATTTTCTCTTCACTTCCATCACCAGCACTAGCAGTTGGTGGCCCAGACAGTCATTaGTCTATATTCCTAGTGATG | + |
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Preference number: 5 (lower is better) Translates to: LLDRFIFSSLPSPALAVGGPDSH*SIFLVM Trigger: CATCACTAGGAATATAGACAAATGACTGTCTGGGCC...ACCAACTGCTAGTGCTGGTGATGGAAGTGAAGAGAAAATGAAGCGGTCTAAGAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000446547.5 |
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| CDS GCA 72 bp | TCAAGTCCCACCGCCGGAGCCACTTCCGCTGCCCGGTaGCGGCCCCGCCGCCACGTCGCTGCACGCAGCGAA | + |
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Preference number: 6 (lower is better) Translates to: SSPTAGATSAAR*RPRRHVAARSE Trigger: TTCGCTGCGTGCAGCGACGTGGCGGCGGGGCCGGCACCGGGCAGCGGAAGTGGCTCCGGCGGTGGGACTTGA 75% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000273047.9 |
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| CDS CCA 72 bp | GGCTGGCAGAACAAGACGCCGGGTTCGATAGTTCTCTaGTCCAGGGCACTGCTGCGCGTGAGGGAGAAGGGG | + |
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Preference number: 6 (lower is better) Translates to: GWQNKTPGSIVL*SRALLRVREKG Trigger: CCCCTTCTCCCTCACGCGCAGCAGTGCCCTGGACCAGAGAACTATCGAACCCGGCGTCTTGTTCTGCCAGCC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000443878.1 |
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| CDS CAA 90 bp | ACCAGGCGGAACCGCGGCCTCCAGTACACTTTCCACGGCGCCATCTaGAGAAGGGAAAGGGTGACACCCGTCGCTCCCTCAGTCAGTCCC | + |
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Preference number: 6 (lower is better) Translates to: TRRNRGLQYTFHGAI*RRERVTPVAPSVSP Trigger: GGGACTGACTGAGGGAGCGACGGGTGTCACCCTTTCCCTTCTCAAGATGGCGCCGTGGAAAGTGTACTGGAGGCCGCGGTTCCGCCTGGT 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000443878.1 |
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| CDS TCA 72 bp | AGTCCCCAAATCCCGGTCTCCAGAGCCCCTGGAGGATaGGTCACCAGGGCTGGCAGAACAAGACGCCGGGTT | + |
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Preference number: 6 (lower is better) Translates to: SPQIPVSRAPGG*VTRAGRTRRRV Trigger: AACCCGGCGTCTTGTTCTGCCAGCCCTGGTGACTCATCCTCCAGGGGCTCTGGAGACCGGGATTTGGGGACT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000443878.1 |
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| CDS GCA 72 bp | GTAAAGAAACCTTGCTTTGACCGAGACCCCCAGGACTaGCAGGACGGAGACCAGGCGGAACCGCGGCCTCCA | + |
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Preference number: 6 (lower is better) Translates to: VKKPCFDRDPQD*QDGDQAEPRPP Trigger: TGGAGGCCGCGGTTCCGCCTGGTCTCCGTCCTGGCAGTCCTGGGGGTCTCGGTCAAAGCAAGGTTTCTTTAC 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000443878.1 |
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| CDS CCA 72 bp | CTCAGTCAGTCCCCAAATCCCGGTCTCCAGAGCCCCTaGAGGATGAGTCACCAGGGCTGGCAGAACAAGACG | + |
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Preference number: 6 (lower is better) Translates to: LSQSPNPGLQSP*RMSHQGWQNKT Trigger: CGTCTTGTTCTGCCAGCCCTGGTGACTCATCCTCCAGGGGCTCTGGAGACCGGGATTTGGGGACTGACTGAG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000443878.1 |
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| CDS CAA 72 bp | AACCGCGGCCTCCAGTACACTTTCCACGGCGCCATCTaGAGAAGGGAAAGGGTGACACCCGTCGCTCCCTCA | + |
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Preference number: 6 (lower is better) Translates to: NRGLQYTFHGAI*RRERVTPVAPS Trigger: TGAGGGAGCGACGGGTGTCACCCTTTCCCTTCTCAAGATGGCGCCGTGGAAAGTGTACTGGAGGCCGCGGTT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000443878.1 |
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