Pregenerated sensors for RAB43 (Homo sapiens)
Ensembl gene IDs: ENSG00000172780Ensembl transcript IDs: ENST00000315150.10, ENST00000393304.5, ENST00000457077.1, ENST00000476465.5, ENST00000615093.1
Found 16 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | GCAAGCCGCGGGCCGAGCTCCGCCCGCTCCAGCCCACGGGCCGCCTaGCTACGTGGAGCCGCCGCAACACCTGAACCCCCAGCACTGCCG | + |
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Preference number: 5 (lower is better) Translates to: ASRGPSSARSSPRAA*LRGAAATPEPPALP Trigger: CGGCAGTGCTGGGGGTTCAGGTGTTGCGGCGGCTCCACGTAGCCAGGCGGCCCGTGGGCTGGAGCGGGCGGAGCTCGGCCCGCGGCTTGC 77% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENST00000315150.10 ENST00000476465.5 ENST00000615093.1 |
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| CDS TCA 90 bp | CTAGAAGAAGCCGAAGGGCCGGCGCTCTGGACGCTGGGACCGGCCTaGGCTCACGCAAGCCGCGGGCCGAGCTCCGCCCGCTCCAGCCCA | + |
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Preference number: 5 (lower is better) Translates to: LEEAEGPALWTLGPA*AHASRGPSSARSSP Trigger: TGGGCTGGAGCGGGCGGAGCTCGGCCCGCGGCTTGCGTGAGCTCAGGCCGGTCCCAGCGTCCAGAGCGCCGGCCCTTCGGCTTCTTCTAG 73% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000315150.10 ENST00000476465.5 ENST00000615093.1 |
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| CDS GCA 90 bp | GAAATCGTACTGCTCGTCCGGGTCCCCCGGGCCTGGGCCCGGCCCTaGCATGGCCTAGAAGAAGCCGAAGGGCCGGCGCTCTGGACGCTG | + |
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Preference number: 5 (lower is better) Translates to: EIVLLVRVPRAWARP*HGLEEAEGPALWTL Trigger: CAGCGTCCAGAGCGCCGGCCCTTCGGCTTCTTCTAGGCCATGGCAGGGCCGGGCCCAGGCCCGGGGGACCCGGACGAGCAGTACGATTTC 71% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENST00000315150.10 ENST00000476465.5 ENST00000615093.1 |
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| CDS CCA 90 bp | GGCCTGCTGCCTCCCAGACCGCCGGTCAGGGACAGGCGGAGACCATaGCTGGAGCTCCGGGCCTGCAGGCCTAGACTAAGAATGACCCCC | + |
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Preference number: 5 (lower is better) Translates to: GLLPPRPPVRDRRRP*LELRACRPRLRMTP Trigger: GGGGGTCATTCTTAGTCTAGGCCTGCAGGCCCGGAGCTCCAGCCATGGTCTCCGCCTGTCCCTGACCGGCGGTCTGGGAGGCAGCAGGCC 69% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000457077.1 |
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| CDS TCA 90 bp | CGGAGGAAGGGGACGACCACAGCAGTGTCACCTGAGTGCCCACTCTaGCAGGCGGGCAGTGCAGTCTCCGAGAGTGGTGGGGGTCGCTCT | + |
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Preference number: 5 (lower is better) Translates to: RRKGTTTAVSPECPL*QAGSAVSESGGGRS Trigger: AGAGCGACCCCCACCACTCTCGGAGACTGCACTGCCCGCCTGTCAGAGTGGGCACTCAGGTGACACTGCTGTGGTCGTCCCCTTCCTCCG 66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000457077.1 |
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| CDS GCA 90 bp | CCGCCGGTCAGGGACAGGCGGAGACCATGGCTGGAGCTCCGGGCCTaGAGGCCTAGACTAAGAATGACCCCCTCCGGAATGGATCACGGA | + |
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Preference number: 5 (lower is better) Translates to: PPVRDRRRPWLELRA*RPRLRMTPSGMDHG Trigger: TCCGTGATCCATTCCGGAGGGGGTCATTCTTAGTCTAGGCCTGCAGGCCCGGAGCTCCAGCCATGGTCTCCGCCTGTCCCTGACCGGCGG 66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000457077.1 |
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| CDS TCA 90 bp | CCGGAATGGATCACGGAGGAAGGGGACGACCACAGCAGTGTCACCTaGGTGCCCACTCTGACAGGCGGGCAGTGCAGTCTCCGAGAGTGG | + |
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Preference number: 5 (lower is better) Translates to: PEWITEEGDDHSSVT*VPTLTGGQCSLREW Trigger: CCACTCTCGGAGACTGCACTGCCCGCCTGTCAGAGTGGGCACTCAGGTGACACTGCTGTGGTCGTCCCCTTCCTCCGTGATCCATTCCGG 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000457077.1 |
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| CDS TCA 72 bp | GCCGAAGGGCCGGCGCTCTGGACGCTGGGACCGGCCTaGGCTCACGCAAGCCGCGGGCCGAGCTCCGCCCGC | + |
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Preference number: 6 (lower is better) Translates to: AEGPALWTLGPA*AHASRGPSSAR Trigger: GCGGGCGGAGCTCGGCCCGCGGCTTGCGTGAGCTCAGGCCGGTCCCAGCGTCCAGAGCGCCGGCCCTTCGGC 79% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000315150.10 ENST00000476465.5 ENST00000615093.1 |
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| CDS CCA 72 bp | CAGGAAATCGTACTGCTCGTCCGGGTCCCCCGGGCCTaGGCCCGGCCCTGCCATGGCCCGCCAAGCCGGGCC | + |
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Preference number: 6 (lower is better) Translates to: QEIVLLVRVPRA*ARPCHGPPSRA Trigger: GGCCCGGCTTGGCGGGCCATGGCAGGGCCGGGCCCAGGCCCGGGGGACCCGGACGAGCAGTACGATTTCCTG 76% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000393304.5 |
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| CDS CCA 72 bp | CCCACTCTGACAGGCGGGCAGTGCAGTCTCCGAGAGTaGTGGGGGTCGCTCTTCCCAGGGGCGGAAGGGAAG | + |
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Preference number: 6 (lower is better) Translates to: PTLTGGQCSLRE*WGSLFPGAEGK Trigger: CTTCCCTTCCGCCCCTGGGAAGAGCGACCCCCACCACTCTCGGAGACTGCACTGCCCGCCTGTCAGAGTGGG 68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000457077.1 |
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| CDS CCA 72 bp | CCTCCCAGACCGCCGGTCAGGGACAGGCGGAGACCATaGCTGGAGCTCCGGGCCTGCAGGCCTAGACTAAGA | + |
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Preference number: 6 (lower is better) Translates to: PPRPPVRDRRRP*LELRACRPRLR Trigger: TCTTAGTCTAGGCCTGCAGGCCCGGAGCTCCAGCCATGGTCTCCGCCTGTCCCTGACCGGCGGTCTGGGAGG 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000457077.1 |
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| CDS CCA 72 bp | ACTCTGACAGGCGGGCAGTGCAGTCTCCGAGAGTGGTaGGGGTCGCTCTTCCCAGGGGCGGAAGGGAAGGGA | + |
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Preference number: 6 (lower is better) Translates to: TLTGGQCSLREW*GSLFPGAEGKG Trigger: TCCCTTCCCTTCCGCCCCTGGGAAGAGCGACCCCCACCACTCTCGGAGACTGCACTGCCCGCCTGTCAGAGT 67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000457077.1 |
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| CDS TCA 72 bp | GGGACGACCACAGCAGTGTCACCTGAGTGCCCACTCTaGCAGGCGGGCAGTGCAGTCTCCGAGAGTGGTGGG | + |
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Preference number: 6 (lower is better) Translates to: GTTTAVSPECPL*QAGSAVSESGG Trigger: CCCACCACTCTCGGAGACTGCACTGCCCGCCTGTCAGAGTGGGCACTCAGGTGACACTGCTGTGGTCGTCCC 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000457077.1 |
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| CDS GCA 72 bp | AGGGACAGGCGGAGACCATGGCTGGAGCTCCGGGCCTaGAGGCCTAGACTAAGAATGACCCCCTCCGGAATG | + |
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Preference number: 6 (lower is better) Translates to: RDRRRPWLELRA*RPRLRMTPSGM Trigger: CATTCCGGAGGGGGTCATTCTTAGTCTAGGCCTGCAGGCCCGGAGCTCCAGCCATGGTCTCCGCCTGTCCCT 64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000457077.1 |
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| CDS TCA 72 bp | ATCACGGAGGAAGGGGACGACCACAGCAGTGTCACCTaGGTGCCCACTCTGACAGGCGGGCAGTGCAGTCTC | + |
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Preference number: 6 (lower is better) Translates to: ITEEGDDHSSVT*VPTLTGGQCSL Trigger: GAGACTGCACTGCCCGCCTGTCAGAGTGGGCACTCAGGTGACACTGCTGTGGTCGTCCCCTTCCTCCGTGAT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000457077.1 |
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| CDS GCA 72 bp | GCTGCAGAAGGCCAGAATCCAGGCTGGCTACAAAACTaGGGAGGAGCCCAAAATCCTTGTGAGGAGAGGACC | + |
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Preference number: 6 (lower is better) Translates to: AAEGQNPGWLQN*GGAQNPCEERT Trigger: GGTCCTCTCCTCACAAGGATTTTGGGCTCCTCCGCAGTTTTGTAGCCAGCCTGGATTCTGGCCTTCTGCAGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000457077.1 |
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