Pregenerated sensors for RAB40A (Homo sapiens)

Ensembl gene IDs: ENSG00000172476

Ensembl transcript IDs: ENST00000372633.1

Found 3 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS TCA 72 bp	GGACGGGTATGGGATAGGAAAGGGACTAAGATGTGTTaGGTACTGTACGTACCCTATGCTGTGTATGACGCT	+
Preference number: 6 (lower is better) Translates to: GRVWDRKGTKMC*VLYVPYAVYDA Trigger: AGCGTCATACACAGCATAGGGTACGTACAGTACTCAACACATCTTAGTCCCTTTCCTATCCCATACCCGTCC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000372633.1
CDS CAA 90 bp	CTGCCACTTACCTGGGAAGGTGACTTAGGCTCTGAAAGCCTGAGCTaGATTATCTGTGAGATAGAACTGACTGTATCATCCTTACCGAGC	+
Preference number: 6 (lower is better) Translates to: LPLTWEGDLGSESLS*IICEIELTVSSLPS Trigger: GCTCGGTAAGGATGATACAGTCAGTTCTATCTCACAGATAATCAAGCTCAGGCTTTCAGAGCCTAAGTCACCTTCCCAGGTAAGTGGCAG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000372633.1
CDS CAA 72 bp	ACCTGGGAAGGTGACTTAGGCTCTGAAAGCCTGAGCTaGATTATCTGTGAGATAGAACTGACTGTATCATCC	+
Preference number: 6 (lower is better) Translates to: TWEGDLGSESLS*IICEIELTVSS Trigger: GGATGATACAGTCAGTTCTATCTCACAGATAATCAAGCTCAGGCTTTCAGAGCCTAAGTCACCTTCCCAGGT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000372633.1

---

If you would like us to post a table for your organism of interest, or have questions, please reach out to eerik at stanford dot edu or xjgao at stanford.edu