Pregenerated sensors for RAB13 (Homo sapiens)
Ensembl gene IDs: ENSG00000143545Ensembl transcript IDs: ENST00000368575.5, ENST00000462680.5, ENST00000484297.1, ENST00000495720.5, ENST00000614713.4
Found 14 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
Type | Sensor | Details |
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CDS TCA 90 bp | GTTAGGGTAGGAGGGTATAAACTGTTTAAAGTAAATCCACCCTCATaGGAAATCTTAGCATTGCTCCCCGTTTTTATCAACACCAACACA | + |
Preference number: 5 (lower is better) Translates to: VRVGGYKLFKVNPPS*EILALLPVFINTNT Trigger: TGTGTTGGTGTTGATAAAAACGGGGAGCAATGCTAAGATTTCTCATGAGGGTGGATTTACTTTAAACAGTTTATACCCTCCTACCCTAAC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000462680.5 |
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CDS CCA 72 bp | GAGGGGTGGGGAGCGCCCGGCACTGGTAGGCGGGACTaGACGGTTGGCAAACAGAGCGGCACGGAGCCCAGG | + |
Preference number: 6 (lower is better) Translates to: EGWGAPGTGRRD*TVGKQSGTEPR Trigger: CCTGGGCTCCGTGCCGCTCTGTTTGCCAACCGTCCAGTCCCGCCTACCAGTGCCGGGCGCTCCCCACCCCTC 72% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000368575.5 ENST00000495720.5 |
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CDS CAA 72 bp | GGGGAGCGCCCGGCACTGGTAGGCGGGACTGGACGGTaGGCAAACAGAGCGGCACGGAGCCCAGGCCAGGAA | + |
Preference number: 6 (lower is better) Translates to: GERPALVGGTGR*ANRAARSPGQE Trigger: TTCCTGGCCTGGGCTCCGTGCCGCTCTGTTTGCCAACCGTCCAGTCCCGCCTACCAGTGCCGGGCGCTCCCC 71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000368575.5 ENST00000495720.5 |
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CDS CCA 72 bp | GGAGCCGGAGAAGGAGGTCACAGGAGAGTCGGGGTCTaGGACATGGCCAGCGGGCTCACCGATGGTGGAGAT | + |
Preference number: 6 (lower is better) Translates to: GAGEGGHRRVGV*DMASGLTDGGD Trigger: ATCTCCACCATCGGTGAGCCCGCTGGCCATGTCCCAGACCCCGACTCTCCTGTGACCTCCTTCTCCGGCTCC 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000495720.5 |
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CDS CCA 72 bp | GACCCCGCATCCATGGGTCTAAACACTAGGCCATGTTaGGCCCTCTGCAACCCACACTGCACCCCTCCCATT | + |
Preference number: 6 (lower is better) Translates to: DPASMGLNTRPC*ALCNPHCTPPI Trigger: AATGGGAGGGGTGCAGTGTGGGTTGCAGAGGGCCCAACATGGCCTAGTGTTTAGACCCATGGATGCGGGGTC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000462680.5 |
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CDS GCA 72 bp | ACCTATCTTGGCCCTCCCAGCCCAGTTCTAGAACATTaGTCAGCCTGGCCCTCACCTTATCGGCCTGCTCCT | + |
Preference number: 6 (lower is better) Translates to: TYLGPPSPVLEH*SAWPSPYRPAP Trigger: AGGAGCAGGCCGATAAGGTGAGGGCCAGGCTGAGCAATGTTCTAGAACTGGGCTGGGAGGGCCAAGATAGGT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000462680.5 |
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CDS CAA 72 bp | AACCTATCTTGGCCCTCCCAGCCCAGTTCTAGAACATaGCTCAGCCTGGCCCTCACCTTATCGGCCTGCTCC | + |
Preference number: 6 (lower is better) Translates to: NLSWPSQPSSRT*LSLALTLSACS Trigger: GGAGCAGGCCGATAAGGTGAGGGCCAGGCTGAGCAATGTTCTAGAACTGGGCTGGGAGGGCCAAGATAGGTT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000462680.5 |
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CDS GCA 72 bp | TCCATGGGTCTAAACACTAGGCCATGTTGGGCCCTCTaGAACCCACACTGCACCCCTCCCATTTTTACCTGC | + |
Preference number: 6 (lower is better) Translates to: SMGLNTRPCWAL*NPHCTPPIFTC Trigger: GCAGGTAAAAATGGGAGGGGTGCAGTGTGGGTTGCAGAGGGCCCAACATGGCCTAGTGTTTAGACCCATGGA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000462680.5 |
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CDS CAA 90 bp | AGTCAGTTTGGAGGGAGGAGAATCTACCTTCTAATACTTCCTCTCTaGGTCGGGGATGGGGGTGTGGATCTCACCTCATCCACATTCATA | + |
Preference number: 6 (lower is better) Translates to: SQFGGRRIYLLILPL*VGDGGVDLTSSTFI Trigger: TATGAATGTGGATGAGGTGAGATCCACACCCCCATCCCCGACCAAGAGAGGAAGTATTAGAAGGTAGATTCTCCTCCCTCCAAACTGACT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000462680.5 |
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CDS CAA 90 bp | ACACACACACACACACACATACATACACACACACACACCCCAGAGTaGTACCTAGTCCAGCAAAACCAACTTACTGATCTCCGGCCTCCT | + |
Preference number: 6 (lower is better) Translates to: THTHTHIHTHTHTPE*YLVQQNQLTDLRPP Trigger: AGGAGGCCGGAGATCAGTAAGTTGGTTTTGCTGGACTAGGTACAACTCTGGGGTGTGTGTGTGTGTATGTATGTGTGTGTGTGTGTGTGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000462680.5 |
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CDS CAA 90 bp | ATGTCGTATACTAGGATAATGCCCTGGGAGATGACAAAATTCACCTaGGACCATGTTCCCATTGAGGCTTCCCACTGCCCTGTAAGTGAC | + |
Preference number: 6 (lower is better) Translates to: MSYTRIMPWEMTKFT*DHVPIEASHCPVSD Trigger: GTCACTTACAGGGCAGTGGGAAGCCTCAATGGGAACATGGTCCAAGGTGAATTTTGTCATCTCCCAGGGCATTATCCTAGTATACGACAT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000462680.5 |
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CDS CAA 72 bp | CACACACACATACATACACACACACACACCCCAGAGTaGTACCTAGTCCAGCAAAACCAACTTACTGATCTC | + |
Preference number: 6 (lower is better) Translates to: HTHIHTHTHTPE*YLVQQNQLTDL Trigger: GAGATCAGTAAGTTGGTTTTGCTGGACTAGGTACAACTCTGGGGTGTGTGTGTGTGTATGTATGTGTGTGTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000462680.5 |
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CDS CCA 72 bp | GGAACTAAAAGCCTAAAGTGGGGAACAGAGTCAGTTTaGAGGGAGGAGAATCTACCTTCTAATACTTCCTCT | + |
Preference number: 6 (lower is better) Translates to: GTKSLKWGTESV*REENLPSNTSS Trigger: AGAGGAAGTATTAGAAGGTAGATTCTCCTCCCTCCAAACTGACTCTGTTCCCCACTTTAGGCTTTTAGTTCC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000462680.5 |
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CDS CAA 72 bp | GAAGCCAGTCTATGTGAATTAACTAGTGGGCCAAACTaGGCACTAGGAAAGTCTGAGGCTAAACAGGATTAC | + |
Preference number: 6 (lower is better) Translates to: EASLCELTSGPN*ALGKSEAKQDY Trigger: GTAATCCTGTTTAGCCTCAGACTTTCCTAGTGCCAAGTTTGGCCCACTAGTTAATTCACATAGACTGGCTTC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000484297.1 ENST00000614713.4 |