RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for RAB13 (Homo sapiens)

Ensembl gene IDs: ENSG00000143545

Ensembl transcript IDs: ENST00000368575.5, ENST00000462680.5, ENST00000484297.1, ENST00000495720.5, ENST00000614713.4

Found 14 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS TCA 90 bp GTTAGGGTAGGAGGGTATAAACTGTTTAAAGTAAATCCACCCTCATaGGAAATCTTAGCATTGCTCCCCGTTTTTATCAACACCAACACA +
Preference number: 5 (lower is better)
Translates to: VRVGGYKLFKVNPPS*EILALLPVFINTNT
Trigger: TGTGTTGGTGTTGATAAAAACGGGGAGCAATGCTAAGATTTCTCATGAGGGTGGATTTACTTTAAACAGTTTATACCCTCCTACCCTAAC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000462680.5
CDS CCA 72 bp GAGGGGTGGGGAGCGCCCGGCACTGGTAGGCGGGACTaGACGGTTGGCAAACAGAGCGGCACGGAGCCCAGG +
Preference number: 6 (lower is better)
Translates to: EGWGAPGTGRRD*TVGKQSGTEPR
Trigger: CCTGGGCTCCGTGCCGCTCTGTTTGCCAACCGTCCAGTCCCGCCTACCAGTGCCGGGCGCTCCCCACCCCTC
72% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000368575.5
ENST00000495720.5
CDS CAA 72 bp GGGGAGCGCCCGGCACTGGTAGGCGGGACTGGACGGTaGGCAAACAGAGCGGCACGGAGCCCAGGCCAGGAA +
Preference number: 6 (lower is better)
Translates to: GERPALVGGTGR*ANRAARSPGQE
Trigger: TTCCTGGCCTGGGCTCCGTGCCGCTCTGTTTGCCAACCGTCCAGTCCCGCCTACCAGTGCCGGGCGCTCCCC
71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000368575.5
ENST00000495720.5
CDS CCA 72 bp GGAGCCGGAGAAGGAGGTCACAGGAGAGTCGGGGTCTaGGACATGGCCAGCGGGCTCACCGATGGTGGAGAT +
Preference number: 6 (lower is better)
Translates to: GAGEGGHRRVGV*DMASGLTDGGD
Trigger: ATCTCCACCATCGGTGAGCCCGCTGGCCATGTCCCAGACCCCGACTCTCCTGTGACCTCCTTCTCCGGCTCC
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000495720.5
CDS CCA 72 bp GACCCCGCATCCATGGGTCTAAACACTAGGCCATGTTaGGCCCTCTGCAACCCACACTGCACCCCTCCCATT +
Preference number: 6 (lower is better)
Translates to: DPASMGLNTRPC*ALCNPHCTPPI
Trigger: AATGGGAGGGGTGCAGTGTGGGTTGCAGAGGGCCCAACATGGCCTAGTGTTTAGACCCATGGATGCGGGGTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000462680.5
CDS GCA 72 bp ACCTATCTTGGCCCTCCCAGCCCAGTTCTAGAACATTaGTCAGCCTGGCCCTCACCTTATCGGCCTGCTCCT +
Preference number: 6 (lower is better)
Translates to: TYLGPPSPVLEH*SAWPSPYRPAP
Trigger: AGGAGCAGGCCGATAAGGTGAGGGCCAGGCTGAGCAATGTTCTAGAACTGGGCTGGGAGGGCCAAGATAGGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000462680.5
CDS CAA 72 bp AACCTATCTTGGCCCTCCCAGCCCAGTTCTAGAACATaGCTCAGCCTGGCCCTCACCTTATCGGCCTGCTCC +
Preference number: 6 (lower is better)
Translates to: NLSWPSQPSSRT*LSLALTLSACS
Trigger: GGAGCAGGCCGATAAGGTGAGGGCCAGGCTGAGCAATGTTCTAGAACTGGGCTGGGAGGGCCAAGATAGGTT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000462680.5
CDS GCA 72 bp TCCATGGGTCTAAACACTAGGCCATGTTGGGCCCTCTaGAACCCACACTGCACCCCTCCCATTTTTACCTGC +
Preference number: 6 (lower is better)
Translates to: SMGLNTRPCWAL*NPHCTPPIFTC
Trigger: GCAGGTAAAAATGGGAGGGGTGCAGTGTGGGTTGCAGAGGGCCCAACATGGCCTAGTGTTTAGACCCATGGA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000462680.5
CDS CAA 90 bp AGTCAGTTTGGAGGGAGGAGAATCTACCTTCTAATACTTCCTCTCTaGGTCGGGGATGGGGGTGTGGATCTCACCTCATCCACATTCATA +
Preference number: 6 (lower is better)
Translates to: SQFGGRRIYLLILPL*VGDGGVDLTSSTFI
Trigger: TATGAATGTGGATGAGGTGAGATCCACACCCCCATCCCCGACCAAGAGAGGAAGTATTAGAAGGTAGATTCTCCTCCCTCCAAACTGACT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000462680.5
CDS CAA 90 bp ACACACACACACACACACATACATACACACACACACACCCCAGAGTaGTACCTAGTCCAGCAAAACCAACTTACTGATCTCCGGCCTCCT +
Preference number: 6 (lower is better)
Translates to: THTHTHIHTHTHTPE*YLVQQNQLTDLRPP
Trigger: AGGAGGCCGGAGATCAGTAAGTTGGTTTTGCTGGACTAGGTACAACTCTGGGGTGTGTGTGTGTGTATGTATGTGTGTGTGTGTGTGTGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000462680.5
CDS CAA 90 bp ATGTCGTATACTAGGATAATGCCCTGGGAGATGACAAAATTCACCTaGGACCATGTTCCCATTGAGGCTTCCCACTGCCCTGTAAGTGAC +
Preference number: 6 (lower is better)
Translates to: MSYTRIMPWEMTKFT*DHVPIEASHCPVSD
Trigger: GTCACTTACAGGGCAGTGGGAAGCCTCAATGGGAACATGGTCCAAGGTGAATTTTGTCATCTCCCAGGGCATTATCCTAGTATACGACAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000462680.5
CDS CAA 72 bp CACACACACATACATACACACACACACACCCCAGAGTaGTACCTAGTCCAGCAAAACCAACTTACTGATCTC +
Preference number: 6 (lower is better)
Translates to: HTHIHTHTHTPE*YLVQQNQLTDL
Trigger: GAGATCAGTAAGTTGGTTTTGCTGGACTAGGTACAACTCTGGGGTGTGTGTGTGTGTATGTATGTGTGTGTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000462680.5
CDS CCA 72 bp GGAACTAAAAGCCTAAAGTGGGGAACAGAGTCAGTTTaGAGGGAGGAGAATCTACCTTCTAATACTTCCTCT +
Preference number: 6 (lower is better)
Translates to: GTKSLKWGTESV*REENLPSNTSS
Trigger: AGAGGAAGTATTAGAAGGTAGATTCTCCTCCCTCCAAACTGACTCTGTTCCCCACTTTAGGCTTTTAGTTCC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000462680.5
CDS CAA 72 bp GAAGCCAGTCTATGTGAATTAACTAGTGGGCCAAACTaGGCACTAGGAAAGTCTGAGGCTAAACAGGATTAC +
Preference number: 6 (lower is better)
Translates to: EASLCELTSGPN*ALGKSEAKQDY
Trigger: GTAATCCTGTTTAGCCTCAGACTTTCCTAGTGCCAAGTTTGGCCCACTAGTTAATTCACATAGACTGGCTTC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000484297.1
ENST00000614713.4