Pregenerated sensors for RAB12 (Homo sapiens)
Ensembl gene IDs: ENSG00000206418Ensembl transcript IDs: ENST00000329286.7, ENST00000649141.1, ENST00000649141.2
Found 19 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR CCA 90 bp | AAGGTACATCCCTTAGGAAGCCATGAGAGAGATTCTGTGGCCTTAGGACCAAGTCATGACGGCCATGAATaGAGCTTTGCTTCGTGGCAG | + |
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Preference number: 2 (lower is better) Translates to: KVHPLGSHERDSVALGPSHDGHE*SFASWQ Trigger: CTGCCACGAAGCAAAGCTCCATTCATGGCCGTCATG...ACTTGGTCCTAAGGCCACAGAATCTCTCTCATGGCTTCCTAAGGGATGTACCTT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000329286.7 ENST00000649141.1 |
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| 3UTR-3UTR CCA 90 bp | AAGGTACATCCCTTAGGAAGCCATGAGAGAGATTCTGTGGCCTTAGGACCAAGTTTCAGATGCTACCACTaGGGGAAATGTCTTGTAAAT | + |
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Preference number: 2 (lower is better) Translates to: KVHPLGSHERDSVALGPSFRCYH*GKCLVN Trigger: ATTTACAAGACATTTCCCCCAGTGGTAGCATCTGAA...ACTTGGTCCTAAGGCCACAGAATCTCTCTCATGGCTTCCTAAGGGATGTACCTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000329286.7 ENST00000649141.1 |
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| 3UTR-3UTR TCA 90 bp | AGAAGGGGGAAGTTTTATCATTACAAAGGTACAGAGTGTTTAGGCAAATACACGTCCCTTAGGAAGCCATaGGAGAGATTCTGTGGCCTT | + |
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Preference number: 2 (lower is better) Translates to: RRGKFYHYKGTECLGKYTSLRKP*ERFCGL Trigger: AAGGCCACAGAATCTCTCTCATGGCTTCCTAAGGGA...CGTGTATTTGCCTAAACACTCTGTACCTTTGTAATGATAAAACTTCCCCCTTCT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000329286.7 ENST00000649141.1 |
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| 3UTR-3UTR TCA 90 bp | CACAATGCTTTTCATACCACAACACTCAAGACACACCAAGTTATTCAAATACATTCCCTTAGGAAGCCATaGGAGAGATTCTGTGGCCTT | + |
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Preference number: 2 (lower is better) Translates to: HNAFHTTTLKTHQVIQIHSLRKP*ERFCGL Trigger: AAGGCCACAGAATCTCTCTCATGGCTTCCTAAGGGA...ATGTATTTGAATAACTTGGTGTGTCTTGAGTGTTGTGGTATGAAAAGCATTGTG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000329286.7 ENST00000649141.1 |
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| 3UTR-3UTR GCA 90 bp | AGCTTCACCGTAAAGAAGGGGGAAGTTTTATCATTACAAAGGTACAGAGTGTTTCTCCAATACTTCAGATaGTACCACTGGGGGAAATGT | + |
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Preference number: 2 (lower is better) Translates to: SFTVKKGEVLSLQRYRVFLQYFR*YHWGKC Trigger: ACATTTCCCCCAGTGGTAGCATCTGAAGTATTGGAG...AAACACTCTGTACCTTTGTAATGATAAAACTTCCCCCTTCTTTACGGTGAAGCT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 2 transcripts: ENST00000329286.7 ENST00000649141.1 |
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| 3UTR-3UTR CCA 90 bp | AGAAGTACTAGGTTTCCCAGTGTATGTACACTAGACACTGGGGTAATGAATGAATGTATAGCTCTGACTTaGATTACAAAGTGCGAAAGG | + |
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Preference number: 2 (lower is better) Translates to: RSTRFPSVCTLDTGVMNECIALT*ITKCER Trigger: CCTTTCGCACTTTGTAATCCAAGTCAGAGCTATACA...TTCATTCATTACCCCAGTGTCTAGTGTACATACACTGGGAAACCTAGTACTTCT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000329286.7 ENST00000649141.1 |
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| 3UTR-3UTR GCA 90 bp | CACAATGCTTTTCATACCACAACACTCAAGACACACCAAGTTATTCAAATACATCTCCAATACTTCAGATaGTACCACTGGGGGAAATGT | + |
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Preference number: 2 (lower is better) Translates to: HNAFHTTTLKTHQVIQIHLQYFR*YHWGKC Trigger: ACATTTCCCCCAGTGGTAGCATCTGAAGTATTGGAG...ATGTATTTGAATAACTTGGTGTGTCTTGAGTGTTGTGGTATGAAAAGCATTGTG 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000329286.7 ENST00000649141.1 |
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| 3UTR-3UTR CCA 90 bp | AGCTTCACCGTAAAGAAGGGGGAAGTTTTATCATTACAAAGGTACAGAGTGTTTTGTATAGCTCTGACTTaGATTACAAAGTGCGAAAGG | + |
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Preference number: 2 (lower is better) Translates to: SFTVKKGEVLSLQRYRVFCIALT*ITKCER Trigger: CCTTTCGCACTTTGTAATCCAAGTCAGAGCTATACA...AAACACTCTGTACCTTTGTAATGATAAAACTTCCCCCTTCTTTACGGTGAAGCT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENST00000329286.7 ENST00000649141.1 |
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| 3UTR-3UTR CCA 90 bp | CACAATGCTTTTCATACCACAACACTCAAGACACACCAAGTTATTCAAATACATTTCAGATGCTACCACTaGGGGAAATGTCTTGTAAAT | + |
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Preference number: 2 (lower is better) Translates to: HNAFHTTTLKTHQVIQIHFRCYH*GKCLVN Trigger: ATTTACAAGACATTTCCCCCAGTGGTAGCATCTGAA...ATGTATTTGAATAACTTGGTGTGTCTTGAGTGTTGTGGTATGAAAAGCATTGTG 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000329286.7 ENST00000649141.1 |
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| 3UTR-3UTR CAA 90 bp | AAGGTACATCCCTTAGGAAGCCATGAGAGAGATTCTGTGGCCTTAGGACCAAGTGCCATGAATGGAGCTTaGCTTCGTGGCAGAAACACT | + |
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Preference number: 3 (lower is better) Translates to: KVHPLGSHERDSVALGPSAMNGA*LRGRNT Trigger: AGTGTTTCTGCCACGAAGCAAAGCTCCATTCATGGC...ACTTGGTCCTAAGGCCACAGAATCTCTCTCATGGCTTCCTAAGGGATGTACCTT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000329286.7 ENST00000649141.1 |
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| 3UTR-3UTR CAA 90 bp | AGAAGTACTAGGTTTCCCAGTGTATGTACACTAGACACTGGGGTAATGAATGAAGTGTATAGCTCTGACTaGGATTACAAAGTGCGAAAG | + |
|
Preference number: 3 (lower is better) Translates to: RSTRFPSVCTLDTGVMNEVYSSD*DYKVRK Trigger: CTTTCGCACTTTGTAATCCAAGTCAGAGCTATACAC...TTCATTCATTACCCCAGTGTCTAGTGTACATACACTGGGAAACCTAGTACTTCT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000329286.7 ENST00000649141.1 |
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| 3UTR-3UTR CAA 90 bp | AGAAAGACCACAATGCTTTTCATACCACAACACTCAAGACACACCAAGTTATTCTCCTTTAAACAGGATTaGTTTAGGACAGCAGCGTGT | + |
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Preference number: 3 (lower is better) Translates to: RKTTMLFIPQHSRHTKLFSFKQD*FRTAAC Trigger: ACACGCTGCTGTCCTAAACAAATCCTGTTTAAAGGA...GAATAACTTGGTGTGTCTTGAGTGTTGTGGTATGAAAAGCATTGTGGTCTTTCT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000329286.7 ENST00000649141.1 |
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| 3UTR-3UTR CAA 90 bp | TTCTTTAAAACGGTAAGCAAAGCACCACGTTCTCTCTTATCAGAATATCTTCTGGTGTATAGCTCTGACTaGGATTACAAAGTGCGAAAG | + |
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Preference number: 3 (lower is better) Translates to: FFKTVSKAPRSLLSEYLLVYSSD*DYKVRK Trigger: CTTTCGCACTTTGTAATCCAAGTCAGAGCTATACAC...CAGAAGATATTCTGATAAGAGAGAACGTGGTGCTTTGCTTACCGTTTTAAAGAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000329286.7 ENST00000649141.1 |
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| CDS CCA 90 bp | TTTCCACTTTGTCTCCAAAGTAGGAAATCAACAGCATCGGACATGTaGTCTTGGTGGAGGCAGTTCTGGCGGTATCTCAGGCTCTGGTTG | + |
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Preference number: 5 (lower is better) Translates to: FPLCLQSRKSTASDM*SWWRQFWRYLRLWL Trigger: CAACCAGAGCCTGAGATACCGCCAGAACTGCCTCCACCAAGACCACATGTCCGATGCTGTTGATTTCCTACTTTGGAGACAAAGTGGAAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000649141.2 |
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| CDS TCA 72 bp | TATCCTTGGCACTTGCTTCACAGAACCGCATCCCAGTaGTCTGCTGTGCAAACTTTTCCCCCTGCTGCCTGG | + |
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Preference number: 6 (lower is better) Translates to: YPWHLLHRTASQ*SAVQTFPPAAW Trigger: CCAGGCAGCAGGGGGAAAAGTTTGCACAGCAGATCACTGGGATGCGGTTCTGTGAAGCAAGTGCCAAGGATA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000649141.2 |
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| CDS CCA 72 bp | CAAAGTAGGAAATCAACAGCATCGGACATGTGGTCTTaGTGGAGGCAGTTCTGGCGGTATCTCAGGCTCTGG | + |
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Preference number: 6 (lower is better) Translates to: QSRKSTASDMWS*WRQFWRYLRLW Trigger: CCAGAGCCTGAGATACCGCCAGAACTGCCTCCACCAAGACCACATGTCCGATGCTGTTGATTTCCTACTTTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000649141.2 |
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| CDS CAA 90 bp | TCATCGACAAGTTTCAAAAATATCTCGTCCACATTGAAGTTATCCTaGGCACTTGCTTCACAGAACCGCATCCCAGTGATCTGCTGTGCA | + |
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Preference number: 6 (lower is better) Translates to: SSTSFKNISSTLKLS*ALASQNRIPVICCA Trigger: TGCACAGCAGATCACTGGGATGCGGTTCTGTGAAGCAAGTGCCAAGGATAACTTCAATGTGGACGAGATATTTTTGAAACTTGTCGATGA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000649141.2 |
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| CDS CAA 72 bp | AGTTTCAAAAATATCTCGTCCACATTGAAGTTATCCTaGGCACTTGCTTCACAGAACCGCATCCCAGTGATC | + |
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Preference number: 6 (lower is better) Translates to: SFKNISSTLKLS*ALASQNRIPVI Trigger: GATCACTGGGATGCGGTTCTGTGAAGCAAGTGCCAAGGATAACTTCAATGTGGACGAGATATTTTTGAAACT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000649141.2 |
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| CDS CAA 90 bp | AGTTCTGGCGGTATCTCAGGCTCTGGTTGTAACGACAGGATACTATaGGACAACTCATTCCTTAAAATATCCAGAGGCATCTTTTTCAGA | + |
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Preference number: 6 (lower is better) Translates to: SSGGISGSGCNDRIL*DNSFLKISRGIFFR Trigger: TCTGAAAAAGATGCCTCTGGATATTTTAAGGAATGAGTTGTCCAATAGTATCCTGTCGTTACAACCAGAGCCTGAGATACCGCCAGAACT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000649141.2 |
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