RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for R3HDM2 (Homo sapiens)

Ensembl gene IDs: ENSG00000179912

Ensembl transcript IDs: ENST00000347140.7, ENST00000358907.6, ENST00000393811.6, ENST00000402412.5, ENST00000403821.6, ENST00000429355.6, ENST00000441731.6, ENST00000448732.1, ENST00000546843.2, ENST00000548161.1, ENST00000551465.1, ENST00000552428.6, ENST00000634871.1

Found 13 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS CCA 90 bp ATTGAATTATATCCTGGGTTTCTAATGGCCCATCAGCAAATGGGGTaGAGGACTCCTCACACACTGCCAGGCTACGCACCAACTTTAGCT +
Preference number: 5 (lower is better)
Translates to: IELYPGFLMAHQQMG*RTPHTLPGYAPTLA
Trigger: AGCTAAAGTTGGTGCGTAGCCTGGCAGTGTGTGAGGAGTCCTCCACCCCATTTGCTGATGGGCCATTAGAAACCCAGGATATAATTCAAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENST00000347140.7
ENST00000358907.6
ENST00000402412.5
ENST00000403821.6
ENST00000441731.6
ENST00000551465.1
ENST00000552428.6
ENST00000634871.1
CDS CCA 90 bp TTTAGGGAACTACTGGGATCTTTACCCCTGCCTTTCTTAGGCCAGTaGAAACAAAACCATGATGCAACTGTTGCTGAAGGTCTATGGGAG +
Preference number: 5 (lower is better)
Translates to: FRELLGSLPLPFLGQ*KQNHDATVAEGLWE
Trigger: CTCCCATAGACCTTCAGCAACAGTTGCATCATGGTTTTGTTTCCACTGGCCTAAGAAAGGCAGGGGTAAAGATCCCAGTAGTTCCCTAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000546843.2
CDS GCA 90 bp TCAACATTTGAAAGACGACTCTCATCCCATGTAAACAACATTGACTaGCTTGCATCAGAATGTCTGCCTGGTGCACCGTGTAAGTTGACT +
Preference number: 5 (lower is better)
Translates to: STFERRLSSHVNNID*LASECLPGAPCKLT
Trigger: AGTCAACTTACACGGTGCACCAGGCAGACATTCTGATGCAAGGCAGTCAATGTTGTTTACATGGGATGAGAGTCGTCTTTCAAATGTTGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000548161.1
CDS TCA 90 bp AGGTTTTTCTCAGTTTCTTTATCTACAGTATTCTGCAGATTACTATaGCCTACTTTCCTCATTAAGACTACTCATTGCTGGGTGCAGTGG +
Preference number: 5 (lower is better)
Translates to: RFFSVSLSTVFCRLL*PTFLIKTTHCWVQW
Trigger: CCACTGCACCCAGCAATGAGTAGTCTTAATGAGGAAAGTAGGTCATAGTAATCTGCAGAATACTGTAGATAAAGAAACTGAGAAAAACCT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000393811.6
CDS GCA 72 bp GGCGTGGGTGGGAGAGCAGGAAGTTGCTGCTGCTGCTaGTGCTGTTGCTGCTGGGCAGTACAAGGGAGAAGC +
Preference number: 6 (lower is better)
Translates to: GVGGRAGSCCCC*CCCCWAVQGRS
Trigger: GCTTCTCCCTTGTACTGCCCAGCAGCAACAGCAGCAGCAGCAGCAGCAACTTCCTGCTCTCCCACCCACGCC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENST00000347140.7
ENST00000358907.6
ENST00000393811.6
ENST00000402412.5
ENST00000403821.6
ENST00000429355.6
ENST00000441731.6
ENST00000634871.1
CDS CCA 72 bp GCAGGAAGTTGCTGCTGCTGCTGCTGCTGTTGCTGCTaGGCAGTACAAGGGAGAAGCCCCCGGACAGACTGG +
Preference number: 6 (lower is better)
Translates to: AGSCCCCCCCCC*AVQGRSPRTDW
Trigger: CCAGTCTGTCCGGGGGCTTCTCCCTTGTACTGCCCAGCAGCAACAGCAGCAGCAGCAGCAGCAACTTCCTGC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 8 transcripts:
ENST00000347140.7
ENST00000358907.6
ENST00000393811.6
ENST00000402412.5
ENST00000403821.6
ENST00000429355.6
ENST00000441731.6
ENST00000634871.1
CDS CCA 72 bp CTGAAGGTCTATGGGAGATGTCCTGTCCTGGCTCTCTaGGAGTCCTCACCTCGTACCGTTCTGCTGAGCAGG +
Preference number: 6 (lower is better)
Translates to: LKVYGRCPVLAL*ESSPRTVLLSR
Trigger: CCTGCTCAGCAGAACGGTACGAGGTGAGGACTCCCAGAGAGCCAGGACAGGACATCTCCCATAGACCTTCAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000546843.2
CDS CCA 72 bp TATCCTGGGTTTCTAATGGCCCATCAGCAAATGGGGTaGAGGACTCCTCACACACTGCCAGGCTACGCACCA +
Preference number: 6 (lower is better)
Translates to: YPGFLMAHQQMG*RTPHTLPGYAP
Trigger: TGGTGCGTAGCCTGGCAGTGTGTGAGGAGTCCTCCACCCCATTTGCTGATGGGCCATTAGAAACCCAGGATA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENST00000347140.7
ENST00000358907.6
ENST00000402412.5
ENST00000403821.6
ENST00000441731.6
ENST00000551465.1
ENST00000552428.6
ENST00000634871.1
CDS CCA 72 bp GTGTTACTGTTAGACATGTTCTTCAATAGAATACAGTaGCCTCTATGGACTCCTCGCACGGGCCTTGGCGGG +
Preference number: 6 (lower is better)
Translates to: VLLLDMFFNRIQ*PLWTPRTGLGG
Trigger: CCCGCCAAGGCCCGTGCGAGGAGTCCATAGAGGCCACTGTATTCTATTGAAGAACATGTCTAACAGTAACAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000448732.1
CDS CCA 72 bp CTACTGGGATCTTTACCCCTGCCTTTCTTAGGCCAGTaGAAACAAAACCATGATGCAACTGTTGCTGAAGGT +
Preference number: 6 (lower is better)
Translates to: LLGSLPLPFLGQ*KQNHDATVAEG
Trigger: ACCTTCAGCAACAGTTGCATCATGGTTTTGTTTCCACTGGCCTAAGAAAGGCAGGGGTAAAGATCCCAGTAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000546843.2
CDS TCA 72 bp TATAGGGTTAATTCAGGCACCCTGCTTCAGCAATTCTaGCTTCGGTCTGACCCTATTTTAAAAGGAAACAAA +
Preference number: 6 (lower is better)
Translates to: YRVNSGTLLQQF*LRSDPILKGNK
Trigger: TTTGTTTCCTTTTAAAATAGGGTCAGACCGAAGTCAGAATTGCTGAAGCAGGGTGCCTGAATTAACCCTATA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000403821.6
CDS CCA 72 bp GTGTTACTGTTAGACATGTTCTTCAATAGAATACAGTaGCCTCTATGGAATATAGGGTTAATTCAGGCACCC +
Preference number: 6 (lower is better)
Translates to: VLLLDMFFNRIQ*PLWNIGLIQAP
Trigger: GGGTGCCTGAATTAACCCTATATTCCATAGAGGCCACTGTATTCTATTGAAGAACATGTCTAACAGTAACAC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000403821.6
CDS TCA 72 bp TCAGTTTCTTTATCTACAGTATTCTGCAGATTACTATaGCCTACTTTCCTCATTAAGACTACTCATTGCTGG +
Preference number: 6 (lower is better)
Translates to: SVSLSTVFCRLL*PTFLIKTTHCW
Trigger: CCAGCAATGAGTAGTCTTAATGAGGAAAGTAGGTCATAGTAATCTGCAGAATACTGTAGATAAAGAAACTGA
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000393811.6