RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for PTPN12 (Homo sapiens)

Ensembl gene IDs: ENSG00000127947

Ensembl transcript IDs: ENST00000248594.11, ENST00000407343.3, ENST00000415482.6, ENST00000418110.5, ENST00000433369.6, ENST00000435495.6, ENST00000440186.5, ENST00000447995.2, ENST00000460731.5, ENST00000464313.1, ENST00000519553.1, ENST00000520947.1, ENST00000522115.6, ENST00000523952.5

Found 208 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR-3UTR TCA 90 bp TCTTTTTCTCCAGTGGCTGTGGGATATATCTTTTCTGTTCTATATTTGGTAGACGGTGGGCAGATCACTTaGGGTCAGGAGCTCAAGACC +
Preference number: 2 (lower is better)
Translates to: SFSPVAVGYIFSVLYLVDGGQIT*GQELKT
Trigger: GGTCTTGAGCTCCTGACCTCAAGTGATCTGCCCACC...GTCTACCAAATATAGAACAGAAAAGATATATCCCACAGCCACTGGAGAAAAAGA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000523952.5
3UTR-3UTR CCA 90 bp TCTTTTTCTCCAGTGGCTGTGGGATATATCTTTTCTGTTCTATATTTGGTAGACATTAGCCAAGCCTCGTaGTGTGTGCCCGTAGTCCCA +
Preference number: 2 (lower is better)
Translates to: SFSPVAVGYIFSVLYLVDISQAS*CVPVVP
Trigger: TGGGACTACGGGCACACACCACGAGGCTTGGCTAAT...GTCTACCAAATATAGAACAGAAAAGATATATCCCACAGCCACTGGAGAAAAAGA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000523952.5
3UTR-3UTR CCA 90 bp TTCTTTTTCTCCAGTGGCTGTGGGATATATCTTTTCTGTTCTATATTTGGTAGAAATATGTATATGGGCTaGGCACGGTGGCTTGTGCCT +
Preference number: 2 (lower is better)
Translates to: FFFSSGCGIYLFCSIFGRNMYMG*ARWLVP
Trigger: AGGCACAAGCCACCGTGCCCAGCCCATATACATATT...TCTACCAAATATAGAACAGAAAAGATATATCCCACAGCCACTGGAGAAAAAGAA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000523952.5
3UTR-3UTR TCA 90 bp TCTCTGATAACCTGCAAAGCTGGCTGCATGAATCCAGCAAGTTTAAAATTCAGAGCTTTCAGTGGCACCTaGATTTTCCAGTATAACTTA +
Preference number: 2 (lower is better)
Translates to: SLITCKAGCMNPASLKFRAFSGT*IFQYNL
Trigger: TAAGTTATACTGGAAAATTCAGGTGCCACTGAAAGC...TCTGAATTTTAAACTTGCTGGATTCATGCAGCCAGCTTTGCAGGTTATCAGAGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000248594.11
3UTR-3UTR CCA 90 bp ATCTCTGATAACCTGCAAAGCTGGCTGCATGAATCCAGCAAGTTTAAAATTCAGAAATCTGGCTTTCAGTaGCACCTGAATTTTCCAGTA +
Preference number: 2 (lower is better)
Translates to: ISDNLQSWLHESSKFKIQKSGFQ*HLNFPV
Trigger: TACTGGAAAATTCAGGTGCCACTGAAAGCCAGATTT...CTGAATTTTAAACTTGCTGGATTCATGCAGCCAGCTTTGCAGGTTATCAGAGAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000248594.11
3UTR-3UTR TCA 90 bp AAGCAGCGTGTAACAGGGTTAAGAGACATTAAGGCAATAATACTTGAAGTTTCAGCTTTCAGTGGCACCTaGATTTTCCAGTATAACTTA +
Preference number: 2 (lower is better)
Translates to: KQRVTGLRDIKAIILEVSAFSGT*IFQYNL
Trigger: TAAGTTATACTGGAAAATTCAGGTGCCACTGAAAGC...TGAAACTTCAAGTATTATTGCCTTAATGTCTCTTAACCCTGTTACACGCTGCTT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000248594.11
ENST00000435495.6
3UTR-3UTR CCA 90 bp AAGCAGCGTGTAACAGGGTTAAGAGACATTAAGGCAATAATACTTGAAGTTTCAAAATCTGGCTTTCAGTaGCACCTGAATTTTCCAGTA +
Preference number: 2 (lower is better)
Translates to: KQRVTGLRDIKAIILEVSKSGFQ*HLNFPV
Trigger: TACTGGAAAATTCAGGTGCCACTGAAAGCCAGATTT...TGAAACTTCAAGTATTATTGCCTTAATGTCTCTTAACCCTGTTACACGCTGCTT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000248594.11
ENST00000435495.6
CDS-3UTR CCA 90 bp TTATTACAATCTTTGATCTCTGATAACCTGCAAAGCTGGCTGCATGAATCCAGCTGCGGCGGCACCGGCTaGGCTCCCGACACCACAACT +
Preference number: 4 (lower is better)
Translates to: LLQSLISDNLQSWLHESSCGGTG*APDTTT
Trigger: AGTTGTGGTGTCGGGAGCCCAGCCGGTGCCGCCGCA...GCTGGATTCATGCAGCCAGCTTTGCAGGTTATCAGAGATCAAAGATTGTAATAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000248594.11
CDS-3UTR TCA 90 bp TTATTACAATCTTTGATCTCTGATAACCTGCAAAGCTGGCTGCATGAATCCAGCATGGGTGGCACTGGATaGGGTTCCGGTGGCTGCAGT +
Preference number: 4 (lower is better)
Translates to: LLQSLISDNLQSWLHESSMGGTG*GSGGCS
Trigger: ACTGCAGCCACCGGAACCTCATCCAGTGCCACCCAT...GCTGGATTCATGCAGCCAGCTTTGCAGGTTATCAGAGATCAAAGATTGTAATAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000248594.11
CDS-3UTR GCA 90 bp CCATATGTAATACTTTTTCCTAAGTGTAGTATAAGGCAGGTAGATGGTCCCAGCCTCAGGATCTCCACTTaGTCCATCCTCCCGCGTCCC +
Preference number: 4 (lower is better)
Translates to: PYVILFPKCSIRQVDGPSLRIST*SILPRP
Trigger: GGGACGCGGGAGGATGGAGCAAGTGGAGATCCTGAG...GCTGGGACCATCTACCTGCCTTATACTACACTTAGGAAAAAGTATTACATATGG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000248594.11
CDS-3UTR CCA 90 bp TTATTACAATCTTTGATCTCTGATAACCTGCAAAGCTGGCTGCATGAATCCAGCCAAGATGGGTGGCACTaGATGAGGTTCCGGTGGCTG +
Preference number: 4 (lower is better)
Translates to: LLQSLISDNLQSWLHESSQDGWH*MRFRWL
Trigger: CAGCCACCGGAACCTCATCCAGTGCCACCCATCTTG...GCTGGATTCATGCAGCCAGCTTTGCAGGTTATCAGAGATCAAAGATTGTAATAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000248594.11
CDS-3UTR TCA 90 bp AAGCAGCGTGTAACAGGGTTAAGAGACATTAAGGCAATAATACTTGAAGTTTCAATGGGTGGCACTGGATaGGGTTCCGGTGGCTGCAGT +
Preference number: 4 (lower is better)
Translates to: KQRVTGLRDIKAIILEVSMGGTG*GSGGCS
Trigger: ACTGCAGCCACCGGAACCTCATCCAGTGCCACCCAT...TGAAACTTCAAGTATTATTGCCTTAATGTCTCTTAACCCTGTTACACGCTGCTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000248594.11
ENST00000435495.6
CDS-3UTR CCA 90 bp TCTCTGATAACCTGCAAAGCTGGCTGCATGAATCCAGCAAGTTTAAAATTCAGAAGGTGTCAAGATGGGTaGCACTGGATGAGGTTCCGG +
Preference number: 4 (lower is better)
Translates to: SLITCKAGCMNPASLKFRRCQDG*HWMRFR
Trigger: CCGGAACCTCATCCAGTGCCACCCATCTTGACACCT...TCTGAATTTTAAACTTGCTGGATTCATGCAGCCAGCTTTGCAGGTTATCAGAGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000248594.11
CDS-3UTR TCA 90 bp TCTCTGATAACCTGCAAAGCTGGCTGCATGAATCCAGCAAGTTTAAAATTCAGACCTGGACCCTCTGGATaGATTTCCTCAGGATCTCCA +
Preference number: 4 (lower is better)
Translates to: SLITCKAGCMNPASLKFRPGPSG*ISSGSP
Trigger: TGGAGATCCTGAGGAAATTCATCCAGAGGGTCCAGG...TCTGAATTTTAAACTTGCTGGATTCATGCAGCCAGCTTTGCAGGTTATCAGAGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000248594.11
CDS-3UTR CCA 90 bp TCTCTGATAACCTGCAAAGCTGGCTGCATGAATCCAGCAAGTTTAAAATTCAGATTGTCCTCCCCATTGTaGTCAGGACTCTTCATGGCC +
Preference number: 4 (lower is better)
Translates to: SLITCKAGCMNPASLKFRLSSPL*SGLFMA
Trigger: GGCCATGAAGAGTCCTGACCACAATGGGGAGGACAA...TCTGAATTTTAAACTTGCTGGATTCATGCAGCCAGCTTTGCAGGTTATCAGAGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000248594.11
CDS-3UTR CCA 90 bp CCATATGTAATACTTTTTCCTAAGTGTAGTATAAGGCAGGTAGATGGTCCCAGCACTGCGGGTCCTTGGTaGTTTTGGAGGAGGAGAATC +
Preference number: 4 (lower is better)
Translates to: PYVILFPKCSIRQVDGPSTAGPW*FWRRRI
Trigger: GATTCTCCTCCTCCAAAACCACCAAGGACCCGCAGT...GCTGGGACCATCTACCTGCCTTATACTACACTTAGGAAAAAGTATTACATATGG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000248594.11
ENST00000435495.6
CDS-3UTR TCA 90 bp TTCTTTTTCTCCAGTGGCTGTGGGATATATCTTTTCTGTTCTATATTTGGTAGAAGGCTGAGGTTGCAGTaGGCCGAGATCACACCACTG +
Preference number: 4 (lower is better)
Translates to: FFFSSGCGIYLFCSIFGRRLRLQ*AEITPL
Trigger: CAGTGGTGTGATCTCGGCTCACTGCAACCTCAGCCT...TCTACCAAATATAGAACAGAAAAGATATATCCCACAGCCACTGGAGAAAAAGAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000523952.5
CDS-3UTR TCA 90 bp TTCTTTTTCTCCAGTGGCTGTGGGATATATCTTTTCTGTTCTATATTTGGTAGAGGTGGGCAGATCACTTaGGGTCAGGAGCTCAAGACC +
Preference number: 4 (lower is better)
Translates to: FFFSSGCGIYLFCSIFGRGGQIT*GQELKT
Trigger: GGTCTTGAGCTCCTGACCTCAAGTGATCTGCCCACC...TCTACCAAATATAGAACAGAAAAGATATATCCCACAGCCACTGGAGAAAAAGAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000523952.5
CDS-3UTR CCA 90 bp ATCTCTGATAACCTGCAAAGCTGGCTGCATGAATCCAGCAAGTTTAAAATTCAGATGGCCTGGACCCTCTaGATGAATTTCCTCAGGATC +
Preference number: 4 (lower is better)
Translates to: ISDNLQSWLHESSKFKIQMAWTL*MNFLRI
Trigger: GATCCTGAGGAAATTCATCCAGAGGGTCCAGGCCAT...CTGAATTTTAAACTTGCTGGATTCATGCAGCCAGCTTTGCAGGTTATCAGAGAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000248594.11
CDS-3UTR CCA 90 bp CCATATGTAATACTTTTTCCTAAGTGTAGTATAAGGCAGGTAGATGGTCCCAGCGGACTCTTCATGGCCTaGACCCTCTGGATGAATTTC +
Preference number: 4 (lower is better)
Translates to: PYVILFPKCSIRQVDGPSGLFMA*TLWMNF
Trigger: GAAATTCATCCAGAGGGTCCAGGCCATGAAGAGTCC...GCTGGGACCATCTACCTGCCTTATACTACACTTAGGAAAAAGTATTACATATGG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000248594.11
CDS-3UTR CCA 90 bp GTTCTTCCACAGCCTGCAATAACAGTGAATTCTCCAGAGATCAGACCGTTCAGTATGGTGCAAACGTTATaGGGTCTTCTCCATACAAAG +
Preference number: 4 (lower is better)
Translates to: VLPQPAITVNSPEIRPFSMVQTL*GLLHTK
Trigger: CTTTGTATGGAGAAGACCCCATAACGTTTGCACCAT...ACTGAACGGTCTGATCTCTGGAGAATTCACTGTTATTGCAGGCTGTGGAAGAAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000447995.2
CDS-3UTR CCA 90 bp AAGCAGCGTGTAACAGGGTTAAGAGACATTAAGGCAATAATACTTGAAGTTTCAGCAACTGCGGGTCCTTaGTGGTTTTGGAGGAGGAGA +
Preference number: 4 (lower is better)
Translates to: KQRVTGLRDIKAIILEVSATAGP*WFWRRR
Trigger: TCTCCTCCTCCAAAACCACCAAGGACCCGCAGTTGC...TGAAACTTCAAGTATTATTGCCTTAATGTCTCTTAACCCTGTTACACGCTGCTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000248594.11
ENST00000435495.6
CDS-3UTR CCA 90 bp GGTATTACTATATTAACATGTCTACAAGCAGCGTGTAACAGGGTTAAGAGACATGCAACTGCGGGTCCTTaGTGGTTTTGGAGGAGGAGA +
Preference number: 4 (lower is better)
Translates to: GITILTCLQAACNRVKRHATAGP*WFWRRR
Trigger: TCTCCTCCTCCAAAACCACCAAGGACCCGCAGTTGC...ATGTCTCTTAACCCTGTTACACGCTGCTTGTAGACATGTTAATATAGTAATACC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000248594.11
ENST00000435495.6
CDS-3UTR CCA 90 bp AAAGGTATTACTATATTAACATGTCTACAAGCAGCGTGTAACAGGGTTAAGAGACAAGATGGGTGGCACTaGATGAGGTTCCGGTGGCTG +
Preference number: 4 (lower is better)
Translates to: KGITILTCLQAACNRVKRQDGWH*MRFRWL
Trigger: CAGCCACCGGAACCTCATCCAGTGCCACCCATCTTG...TCTCTTAACCCTGTTACACGCTGCTTGTAGACATGTTAATATAGTAATACCTTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000248594.11
ENST00000435495.6
CDS-3UTR CCA 90 bp TCTCTGATAACCTGCAAAGCTGGCTGCATGAATCCAGCAAGTTTAAAATTCAGAGAGAAGGTGTCAAGATaGGTGGCACTGGATGAGGTT +
Preference number: 4 (lower is better)
Translates to: SLITCKAGCMNPASLKFREKVSR*VALDEV
Trigger: AACCTCATCCAGTGCCACCCATCTTGACACCTTCTC...TCTGAATTTTAAACTTGCTGGATTCATGCAGCCAGCTTTGCAGGTTATCAGAGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000248594.11
CDS-3UTR TCA 90 bp TCTTTTTCTCCAGTGGCTGTGGGATATATCTTTTCTGTTCTATATTTGGTAGACCCTGGACCCTCTGGATaGATTTCCTCAGGATCTCCA +
Preference number: 4 (lower is better)
Translates to: SFSPVAVGYIFSVLYLVDPGPSG*ISSGSP
Trigger: TGGAGATCCTGAGGAAATTCATCCAGAGGGTCCAGG...GTCTACCAAATATAGAACAGAAAAGATATATCCCACAGCCACTGGAGAAAAAGA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000523952.5
CDS-3UTR TCA 90 bp CCACAGCCTGCAATAACAGTGAATTCTCCAGAGATCAGACCGTTCAGTAAGTGGTTTGCTAAAGGTCCTTaGGTTGCTACATATGCTTTT +
Preference number: 4 (lower is better)
Translates to: PQPAITVNSPEIRPFSKWFAKGP*VATYAF
Trigger: AAAAGCATATGTAGCAACTCAAGGACCTTTAGCAAA...CCACTTACTGAACGGTCTGATCTCTGGAGAATTCACTGTTATTGCAGGCTGTGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000447995.2
CDS-3UTR CCA 90 bp TCTTTTTCTCCAGTGGCTGTGGGATATATCTTTTCTGTTCTATATTTGGTAGACTTGTCCTCCCCATTGTaGTCAGGACTCTTCATGGCC +
Preference number: 4 (lower is better)
Translates to: SFSPVAVGYIFSVLYLVDLSSPL*SGLFMA
Trigger: GGCCATGAAGAGTCCTGACCACAATGGGGAGGACAA...GTCTACCAAATATAGAACAGAAAAGATATATCCCACAGCCACTGGAGAAAAAGA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000523952.5
CDS-3UTR CCA 90 bp AAAGGTATTACTATATTAACATGTCTACAAGCAGCGTGTAACAGGGTTAAGAGAAGGTGTCAAGATGGGTaGCACTGGATGAGGTTCCGG +
Preference number: 4 (lower is better)
Translates to: KGITILTCLQAACNRVKRRCQDG*HWMRFR
Trigger: CCGGAACCTCATCCAGTGCCACCCATCTTGACACCT...TCTCTTAACCCTGTTACACGCTGCTTGTAGACATGTTAATATAGTAATACCTTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000248594.11
ENST00000435495.6
CDS-3UTR CCA 90 bp CCATATGTAATACTTTTTCCTAAGTGTAGTATAAGGCAGGTAGATGGTCCCAGCCCCATCAAAACTTTTTaGTCCCTCTTGGAGAGGGAC +
Preference number: 4 (lower is better)
Translates to: PYVILFPKCSIRQVDGPSPIKTF*SLLERD
Trigger: GTCCCTCTCCAAGAGGGACCAAAAAGTTTTGATGGG...GCTGGGACCATCTACCTGCCTTATACTACACTTAGGAAAAAGTATTACATATGG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 2 transcripts:
ENST00000248594.11
ENST00000435495.6
CDS-3UTR GCA 90 bp TCTCTGATAACCTGCAAAGCTGGCTGCATGAATCCAGCAAGTTTAAAATTCAGATTGAGTTGCTACATATaGTTTTGGCCCATAGACGCC +
Preference number: 4 (lower is better)
Translates to: SLITCKAGCMNPASLKFRLSCYI*FWPIDA
Trigger: GGCGTCTATGGGCCAAAAGCATATGTAGCAACTCAA...TCTGAATTTTAAACTTGCTGGATTCATGCAGCCAGCTTTGCAGGTTATCAGAGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000248594.11
CDS-3UTR CCA 90 bp TCTTTTTCTCCAGTGGCTGTGGGATATATCTTTTCTGTTCTATATTTGGTAGACATGGCCTGGACCCTCTaGATGAATTTCCTCAGGATC +
Preference number: 4 (lower is better)
Translates to: SFSPVAVGYIFSVLYLVDMAWTL*MNFLRI
Trigger: GATCCTGAGGAAATTCATCCAGAGGGTCCAGGCCAT...GTCTACCAAATATAGAACAGAAAAGATATATCCCACAGCCACTGGAGAAAAAGA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000523952.5
CDS-3UTR CCA 90 bp TTATTACAATCTTTGATCTCTGATAACCTGCAAAGCTGGCTGCATGAATCCAGCAATCTATGGCACAAATaGCACCTGTTCTTCCACAGC +
Preference number: 4 (lower is better)
Translates to: LLQSLISDNLQSWLHESSNLWHK*HLFFHS
Trigger: GCTGTGGAAGAACAGGTGCCATTTGTGCCATAGATT...GCTGGATTCATGCAGCCAGCTTTGCAGGTTATCAGAGATCAAAGATTGTAATAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000248594.11
CDS-3UTR CCA 90 bp TCTCTGATAACCTGCAAAGCTGGCTGCATGAATCCAGCAAGTTTAAAATTCAGATGGATGAGGTTCCGGTaGCTGCAGTATTTCTTCTTT +
Preference number: 4 (lower is better)
Translates to: SLITCKAGCMNPASLKFRWMRFR*LQYFFF
Trigger: AAAGAAGAAATACTGCAGCCACCGGAACCTCATCCA...TCTGAATTTTAAACTTGCTGGATTCATGCAGCCAGCTTTGCAGGTTATCAGAGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000248594.11
CDS-3UTR CCA 90 bp AAGCAGCGTGTAACAGGGTTAAGAGACATTAAGGCAATAATACTTGAAGTTTCAGAGAAGGTGTCAAGATaGGTGGCACTGGATGAGGTT +
Preference number: 4 (lower is better)
Translates to: KQRVTGLRDIKAIILEVSEKVSR*VALDEV
Trigger: AACCTCATCCAGTGCCACCCATCTTGACACCTTCTC...TGAAACTTCAAGTATTATTGCCTTAATGTCTCTTAACCCTGTTACACGCTGCTT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000248594.11
ENST00000435495.6
CDS-3UTR TCA 90 bp TTATTACAATCTTTGATCTCTGATAACCTGCAAAGCTGGCTGCATGAATCCAGCTTCAGGTCCATGAAATaGCCACGTTACATGTCCTTT +
Preference number: 4 (lower is better)
Translates to: LLQSLISDNLQSWLHESSFRSMK*PRYMSF
Trigger: AAAGGACATGTAACGTGGTCATTTCATGGACCTGAA...GCTGGATTCATGCAGCCAGCTTTGCAGGTTATCAGAGATCAAAGATTGTAATAA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000248594.11
CDS-3UTR TCA 90 bp CCATATGTAATACTTTTTCCTAAGTGTAGTATAAGGCAGGTAGATGGTCCCAGCGCATTTTCAGGTCCATaGAATGACCACGTTACATGT +
Preference number: 4 (lower is better)
Translates to: PYVILFPKCSIRQVDGPSAFSGP*NDHVTC
Trigger: ACATGTAACGTGGTCATTTCATGGACCTGAAAATGC...GCTGGGACCATCTACCTGCCTTATACTACACTTAGGAAAAAGTATTACATATGG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000248594.11
ENST00000435495.6
CDS-3UTR GCA 90 bp CAGCTTTTAGTAAATTCCACGTATAATCTATGGCACAAATGGCACCTGTTCTTCTTGAGTTGCTACATATaGTTTTGGCCCATAGACGCC +
Preference number: 4 (lower is better)
Translates to: QLLVNSTYNLWHKWHLFFLSCYI*FWPIDA
Trigger: GGCGTCTATGGGCCAAAAGCATATGTAGCAACTCAA...GAAGAACAGGTGCCATTTGTGCCATAGATTATACGTGGAATTTACTAAAAGCTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000447995.2
CDS-3UTR GCA 90 bp GTTCTTCCACAGCCTGCAATAACAGTGAATTCTCCAGAGATCAGACCGTTCAGTAGAAATTTTAAATGGTaGAAACGTTATGGGGTCTTC +
Preference number: 4 (lower is better)
Translates to: VLPQPAITVNSPEIRPFSRNFKW*KRYGVF
Trigger: GAAGACCCCATAACGTTTGCACCATTTAAAATTTCT...ACTGAACGGTCTGATCTCTGGAGAATTCACTGTTATTGCAGGCTGTGGAAGAAC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000447995.2
CDS-3UTR CCA 90 bp TTCTTTTTCTCCAGTGGCTGTGGGATATATCTTTTCTGTTCTATATTTGGTAGAGGACTCTTCATGGCCTaGACCCTCTGGATGAATTTC +
Preference number: 4 (lower is better)
Translates to: FFFSSGCGIYLFCSIFGRGLFMA*TLWMNF
Trigger: GAAATTCATCCAGAGGGTCCAGGCCATGAAGAGTCC...TCTACCAAATATAGAACAGAAAAGATATATCCCACAGCCACTGGAGAAAAAGAA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000523952.5
CDS-3UTR CCA 90 bp CCATATGTAATACTTTTTCCTAAGTGTAGTATAAGGCAGGTAGATGGTCCCAGCTCGGCTGTGATCAAATaGCAGTATGTCCTTGTATCT +
Preference number: 4 (lower is better)
Translates to: PYVILFPKCSIRQVDGPSSAVIK*QYVLVS
Trigger: AGATACAAGGACATACTGCCATTTGATCACAGCCGA...GCTGGGACCATCTACCTGCCTTATACTACACTTAGGAAAAAGTATTACATATGG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000248594.11
ENST00000435495.6
CDS-3UTR CCA 90 bp CCATATGTAATACTTTTTCCTAAGTGTAGTATAAGGCAGGTAGATGGTCCCAGCATGGTGCAAACGTTATaGGGTCTTCTCCATACAAAG +
Preference number: 4 (lower is better)
Translates to: PYVILFPKCSIRQVDGPSMVQTL*GLLHTK
Trigger: CTTTGTATGGAGAAGACCCCATAACGTTTGCACCAT...GCTGGGACCATCTACCTGCCTTATACTACACTTAGGAAAAAGTATTACATATGG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000248594.11
ENST00000435495.6
CDS-3UTR CCA 90 bp CAGCTTTTAGTAAATTCCACGTATAATCTATGGCACAAATGGCACCTGTTCTTCAATCTATGGCACAAATaGCACCTGTTCTTCCACAGC +
Preference number: 4 (lower is better)
Translates to: QLLVNSTYNLWHKWHLFFNLWHK*HLFFHS
Trigger: GCTGTGGAAGAACAGGTGCCATTTGTGCCATAGATT...GAAGAACAGGTGCCATTTGTGCCATAGATTATACGTGGAATTTACTAAAAGCTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000447995.2
CDS-3UTR CCA 90 bp CCATATGTAATACTTTTTCCTAAGTGTAGTATAAGGCAGGTAGATGGTCCCAGCGTCATCAGAGTGAAGTaGATTAGTAAAACTGAGGGG +
Preference number: 4 (lower is better)
Translates to: PYVILFPKCSIRQVDGPSVIRVK*ISKTEG
Trigger: CCCCTCAGTTTTACTAATCCACTTCACTCTGATGAC...GCTGGGACCATCTACCTGCCTTATACTACACTTAGGAAAAAGTATTACATATGG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000248594.11
ENST00000435495.6
CDS-3UTR CCA 90 bp ATCTCTGATAACCTGCAAAGCTGGCTGCATGAATCCAGCAAGTTTAAAATTCAGTGGCAGCAGAAACTGTaGCACTTGCTGTTGAAATAT +
Preference number: 4 (lower is better)
Translates to: ISDNLQSWLHESSKFKIQWQQKL*HLLLKY
Trigger: ATATTTCAACAGCAAGTGCCACAGTTTCTGCTGCCA...CTGAATTTTAAACTTGCTGGATTCATGCAGCCAGCTTTGCAGGTTATCAGAGAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000248594.11
CDS-3UTR CCA 90 bp TCTCTGATAACCTGCAAAGCTGGCTGCATGAATCCAGCAAGTTTAAAATTCAGAGTGAATACCTCCCGCTaGATGATCACATTTCTCATT +
Preference number: 4 (lower is better)
Translates to: SLITCKAGCMNPASLKFRVNTSR*MITFLI
Trigger: AATGAGAAATGTGATCATCCAGCGGGAGGTATTCAC...TCTGAATTTTAAACTTGCTGGATTCATGCAGCCAGCTTTGCAGGTTATCAGAGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000248594.11
CDS-3UTR TCA 90 bp TCTCTGATAACCTGCAAAGCTGGCTGCATGAATCCAGCAAGTTTAAAATTCAGAATCTTTTTCAGCACCTaGATGTGTTGTTCCTGCTAT +
Preference number: 4 (lower is better)
Translates to: SLITCKAGCMNPASLKFRIFFST*MCCSCY
Trigger: ATAGCAGGAACAACACATTCAGGTGCTGAAAAAGAT...TCTGAATTTTAAACTTGCTGGATTCATGCAGCCAGCTTTGCAGGTTATCAGAGA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000248594.11
CDS-3UTR GCA 90 bp CCATATGTAATACTTTTTCCTAAGTGTAGTATAAGGCAGGTAGATGGTCCCAGCGAAGTAGTCTGTTCTTaGTTGTTCATCCTCACAAGA +
Preference number: 4 (lower is better)
Translates to: PYVILFPKCSIRQVDGPSEVVCS*LFILTR
Trigger: TCTTGTGAGGATGAACAAGCAAGAACAGACTACTTC...GCTGGGACCATCTACCTGCCTTATACTACACTTAGGAAAAAGTATTACATATGG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000248594.11
ENST00000435495.6
CDS-3UTR GCA 90 bp TTAGTAAATTCCACGTATAATCTATGGCACAAATGGCACCTGTTCTTCCACAGCGAAGTAGTCTGTTCTTaGTTGTTCATCCTCACAAGA +
Preference number: 4 (lower is better)
Translates to: LVNSTYNLWHKWHLFFHSEVVCS*LFILTR
Trigger: TCTTGTGAGGATGAACAAGCAAGAACAGACTACTTC...GCTGTGGAAGAACAGGTGCCATTTGTGCCATAGATTATACGTGGAATTTACTAA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000447995.2
CDS-3UTR GCA 90 bp CCATATGTAATACTTTTTCCTAAGTGTAGTATAAGGCAGGTAGATGGTCCCAGCCTCCTTTGTTTGTACTaGAGAATGCCTTTGTGTTCT +
Preference number: 4 (lower is better)
Translates to: PYVILFPKCSIRQVDGPSLLCLY*RMPLCS
Trigger: AGAACACAAAGGCATTCTGCAGTACAAACAAAGGAG...GCTGGGACCATCTACCTGCCTTATACTACACTTAGGAAAAAGTATTACATATGG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000248594.11
ENST00000435495.6
CDS-3UTR GCA 90 bp CCATATGTAATACTTTTTCCTAAGTGTAGTATAAGGCAGGTAGATGGTCCCAGCTATCTATCATTGTCCTaGCACACAGTAGTGACTGTT +
Preference number: 4 (lower is better)
Translates to: PYVILFPKCSIRQVDGPSYLSLS*HTVVTV
Trigger: AACAGTCACTACTGTGTGGCAGGACAATGATAGATA...GCTGGGACCATCTACCTGCCTTATACTACACTTAGGAAAAAGTATTACATATGG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000248594.11
ENST00000435495.6
CDS-3UTR GCA 90 bp CAGCTTTTAGTAAATTCCACGTATAATCTATGGCACAAATGGCACCTGTTCTTCTGTTCTTCCACAGCCTaGAATAACAGTGAATTCTCC +
Preference number: 4 (lower is better)
Translates to: QLLVNSTYNLWHKWHLFFCSSTA*NNSEFS
Trigger: GGAGAATTCACTGTTATTGCAGGCTGTGGAAGAACA...GAAGAACAGGTGCCATTTGTGCCATAGATTATACGTGGAATTTACTAAAAGCTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000447995.2
CDS-3UTR CCA 90 bp GGTATTACTATATTAACATGTCTACAAGCAGCGTGTAACAGGGTTAAGAGACATAATCTATGGCACAAATaGCACCTGTTCTTCCACAGC +
Preference number: 4 (lower is better)
Translates to: GITILTCLQAACNRVKRHNLWHK*HLFFHS
Trigger: GCTGTGGAAGAACAGGTGCCATTTGTGCCATAGATT...ATGTCTCTTAACCCTGTTACACGCTGCTTGTAGACATGTTAATATAGTAATACC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000248594.11
ENST00000435495.6
CDS-3UTR CCA 90 bp AAGCAGCGTGTAACAGGGTTAAGAGACATTAAGGCAATAATACTTGAAGTTTCATGGATGAGGTTCCGGTaGCTGCAGTATTTCTTCTTT +
Preference number: 4 (lower is better)
Translates to: KQRVTGLRDIKAIILEVSWMRFR*LQYFFF
Trigger: AAAGAAGAAATACTGCAGCCACCGGAACCTCATCCA...TGAAACTTCAAGTATTATTGCCTTAATGTCTCTTAACCCTGTTACACGCTGCTT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000248594.11
ENST00000435495.6
CDS-3UTR CCA 90 bp CCATATGTAATACTTTTTCCTAAGTGTAGTATAAGGCAGGTAGATGGTCCCAGCATGCAACACTGGCTTTaGATGGTATCTATCATTGTC +
Preference number: 4 (lower is better)
Translates to: PYVILFPKCSIRQVDGPSMQHWL*MVSIIV
Trigger: GACAATGATAGATACCATCCAAAGCCAGTGTTGCAT...GCTGGGACCATCTACCTGCCTTATACTACACTTAGGAAAAAGTATTACATATGG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000248594.11
ENST00000435495.6
CDS-3UTR CCA 90 bp ATCTCTGATAACCTGCAAAGCTGGCTGCATGAATCCAGCAAGTTTAAAATTCAGAACCATATGCAACACTaGCTTTGGATGGTATCTATC +
Preference number: 4 (lower is better)
Translates to: ISDNLQSWLHESSKFKIQNHMQH*LWMVSI
Trigger: GATAGATACCATCCAAAGCCAGTGTTGCATATGGTT...CTGAATTTTAAACTTGCTGGATTCATGCAGCCAGCTTTGCAGGTTATCAGAGAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000248594.11
CDS-3UTR CCA 90 bp CCATATGTAATACTTTTTCCTAAGTGTAGTATAAGGCAGGTAGATGGTCCCAGCAACCATATGCAACACTaGCTTTGGATGGTATCTATC +
Preference number: 4 (lower is better)
Translates to: PYVILFPKCSIRQVDGPSNHMQH*LWMVSI
Trigger: GATAGATACCATCCAAAGCCAGTGTTGCATATGGTT...GCTGGGACCATCTACCTGCCTTATACTACACTTAGGAAAAAGTATTACATATGG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000248594.11
ENST00000435495.6
CDS-3UTR CCA 90 bp TTATTACAATCTTTGATCTCTGATAACCTGCAAAGCTGGCTGCATGAATCCAGCTCCACACAAGAATTCTaGGAAGTATCACCGACATTT +
Preference number: 4 (lower is better)
Translates to: LLQSLISDNLQSWLHESSSTQEF*EVSPTF
Trigger: AAATGTCGGTGATACTTCCCAGAATTCTTGTGTGGA...GCTGGATTCATGCAGCCAGCTTTGCAGGTTATCAGAGATCAAAGATTGTAATAA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000248594.11
CDS-3UTR CCA 90 bp AAAGGTATTACTATATTAACATGTCTACAAGCAGCGTGTAACAGGGTTAAGAGAGATAACCTGCAAAGCTaGCTGCATGAATCCAGCAAG +
Preference number: 4 (lower is better)
Translates to: KGITILTCLQAACNRVKRDNLQS*LHESSK
Trigger: CTTGCTGGATTCATGCAGCCAGCTTTGCAGGTTATC...TCTCTTAACCCTGTTACACGCTGCTTGTAGACATGTTAATATAGTAATACCTTT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000248594.11
CDS-3UTR TCA 90 bp AAGCAGCGTGTAACAGGGTTAAGAGACATTAAGGCAATAATACTTGAAGTTTCATGGGCAATAGCTCTATaGACAAGTTCATATTGCTCC +
Preference number: 4 (lower is better)
Translates to: KQRVTGLRDIKAIILEVSWAIAL*TSSYCS
Trigger: GGAGCAATATGAACTTGTTCATAGAGCTATTGCCCA...TGAAACTTCAAGTATTATTGCCTTAATGTCTCTTAACCCTGTTACACGCTGCTT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000248594.11
ENST00000435495.6
CDS-3UTR TCA 90 bp TTATTACAATCTTTGATCTCTGATAACCTGCAAAGCTGGCTGCATGAATCCAGCTACTATAGTTTCTGTTaGGGTCTGCTGAATGTTGTT +
Preference number: 4 (lower is better)
Translates to: LLQSLISDNLQSWLHESSYYSFC*GLLNVV
Trigger: AACAACATTCAGCAGACCTCAACAGAAACTATAGTA...GCTGGATTCATGCAGCCAGCTTTGCAGGTTATCAGAGATCAAAGATTGTAATAA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000248594.11
CDS-3UTR TCA 90 bp CCATATGTAATACTTTTTCCTAAGTGTAGTATAAGGCAGGTAGATGGTCCCAGCTACTATAGTTTCTGTTaGGGTCTGCTGAATGTTGTT +
Preference number: 4 (lower is better)
Translates to: PYVILFPKCSIRQVDGPSYYSFC*GLLNVV
Trigger: AACAACATTCAGCAGACCTCAACAGAAACTATAGTA...GCTGGGACCATCTACCTGCCTTATACTACACTTAGGAAAAAGTATTACATATGG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000248594.11
ENST00000435495.6
CDS-3UTR TCA 90 bp GGTATTACTATATTAACATGTCTACAAGCAGCGTGTAACAGGGTTAAGAGACATGGTGAAGTGTTATCATaGTCCACAAGATCAGGTGTT +
Preference number: 4 (lower is better)
Translates to: GITILTCLQAACNRVKRHGEVLS*STRSGV
Trigger: AACACCTGATCTTGTGGATCATGATAACACTTCACC...ATGTCTCTTAACCCTGTTACACGCTGCTTGTAGACATGTTAATATAGTAATACC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000248594.11
ENST00000435495.6
CDS-3UTR TCA 90 bp AAGCAGCGTGTAACAGGGTTAAGAGACATTAAGGCAATAATACTTGAAGTTTCAGGTGAAGTGTTATCATaGTCCACAAGATCAGGTGTT +
Preference number: 4 (lower is better)
Translates to: KQRVTGLRDIKAIILEVSGEVLS*STRSGV
Trigger: AACACCTGATCTTGTGGATCATGATAACACTTCACC...TGAAACTTCAAGTATTATTGCCTTAATGTCTCTTAACCCTGTTACACGCTGCTT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000248594.11
ENST00000435495.6
CDS-3UTR TCA 90 bp AAGCAGCGTGTAACAGGGTTAAGAGACATTAAGGCAATAATACTTGAAGTTTCATGTTCTGAAGAGTGGTaGAGTGTTATCATGATCCAC +
Preference number: 4 (lower is better)
Translates to: KQRVTGLRDIKAIILEVSCSEEW*SVIMIH
Trigger: GTGGATCATGATAACACTTCACCACTCTTCAGAACA...TGAAACTTCAAGTATTATTGCCTTAATGTCTCTTAACCCTGTTACACGCTGCTT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000248594.11
ENST00000435495.6
CDS-3UTR TCA 90 bp AAGCAGCGTGTAACAGGGTTAAGAGACATTAAGGCAATAATACTTGAAGTTTCAATACCTCCCGCTGGATaGTCACATTTCTCATTTTCA +
Preference number: 4 (lower is better)
Translates to: KQRVTGLRDIKAIILEVSIPPAG*SHFSFS
Trigger: TGAAAATGAGAAATGTGATCATCCAGCGGGAGGTAT...TGAAACTTCAAGTATTATTGCCTTAATGTCTCTTAACCCTGTTACACGCTGCTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000248594.11
ENST00000435495.6
CDS-3UTR TCA 90 bp CCATATGTAATACTTTTTCCTAAGTGTAGTATAAGGCAGGTAGATGGTCCCAGCGAATCTCTGACTAGATaGAAACAGGAACAATTAGGA +
Preference number: 4 (lower is better)
Translates to: PYVILFPKCSIRQVDGPSESLTR*KQEQLG
Trigger: TCCTAATTGTTCCTGTTTTCATCTAGTCAGAGATTC...GCTGGGACCATCTACCTGCCTTATACTACACTTAGGAAAAAGTATTACATATGG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000248594.11
CDS-3UTR GCA 90 bp TCTCTGATAACCTGCAAAGCTGGCTGCATGAATCCAGCAAGTTTAAAATTCAGAGTTTGTACTGCAGAATaGCTTTGTGTTCTCATTTCT +
Preference number: 4 (lower is better)
Translates to: SLITCKAGCMNPASLKFRVCTAE*LCVLIS
Trigger: AGAAATGAGAACACAAAGGCATTCTGCAGTACAAAC...TCTGAATTTTAAACTTGCTGGATTCATGCAGCCAGCTTTGCAGGTTATCAGAGA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000248594.11
CDS-3UTR GCA 90 bp CCATATGTAATACTTTTTCCTAAGTGTAGTATAAGGCAGGTAGATGGTCCCAGCGTTTGTACTGCAGAATaGCTTTGTGTTCTCATTTCT +
Preference number: 4 (lower is better)
Translates to: PYVILFPKCSIRQVDGPSVCTAE*LCVLIS
Trigger: AGAAATGAGAACACAAAGGCATTCTGCAGTACAAAC...GCTGGGACCATCTACCTGCCTTATACTACACTTAGGAAAAAGTATTACATATGG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000248594.11
ENST00000435495.6
CDS-3UTR GCA 90 bp GGTATTACTATATTAACATGTCTACAAGCAGCGTGTAACAGGGTTAAGAGACATTCTGATGAAACCATATaGAACACTGGCTTTGGATGG +
Preference number: 4 (lower is better)
Translates to: GITILTCLQAACNRVKRHSDETI*NTGFGW
Trigger: CCATCCAAAGCCAGTGTTGCATATGGTTTCATCAGA...ATGTCTCTTAACCCTGTTACACGCTGCTTGTAGACATGTTAATATAGTAATACC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000248594.11
ENST00000435495.6
CDS-3UTR GCA 90 bp TCTCTGATAACCTGCAAAGCTGGCTGCATGAATCCAGCAAGTTTAAAATTCAGATTGATTGTGTTACACTaGAGTCCACACAAGAATTCT +
Preference number: 4 (lower is better)
Translates to: SLITCKAGCMNPASLKFRLIVLH*SPHKNS
Trigger: AGAATTCTTGTGTGGACTGCAGTGTAACACAATCAA...TCTGAATTTTAAACTTGCTGGATTCATGCAGCCAGCTTTGCAGGTTATCAGAGA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000248594.11
CDS-3UTR GCA 90 bp CCATATGTAATACTTTTTCCTAAGTGTAGTATAAGGCAGGTAGATGGTCCCAGCTTGATTGTGTTACACTaGAGTCCACACAAGAATTCT +
Preference number: 4 (lower is better)
Translates to: PYVILFPKCSIRQVDGPSLIVLH*SPHKNS
Trigger: AGAATTCTTGTGTGGACTGCAGTGTAACACAATCAA...GCTGGGACCATCTACCTGCCTTATACTACACTTAGGAAAAAGTATTACATATGG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000248594.11
ENST00000435495.6
CDS-3UTR CCA 90 bp ATCTCTGATAACCTGCAAAGCTGGCTGCATGAATCCAGCAAGTTTAAAATTCAGCTTCTTTTTCTCCAGTaGCTGTGGGATATATCTTTT +
Preference number: 4 (lower is better)
Translates to: ISDNLQSWLHESSKFKIQLLFLQ*LWDISF
Trigger: AAAAGATATATCCCACAGCCACTGGAGAAAAAGAAG...CTGAATTTTAAACTTGCTGGATTCATGCAGCCAGCTTTGCAGGTTATCAGAGAT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000248594.11
CDS-3UTR CCA 90 bp GGTATTACTATATTAACATGTCTACAAGCAGCGTGTAACAGGGTTAAGAGACATTCGGCTGTGATCAAATaGCAGTATGTCCTTGTATCT +
Preference number: 4 (lower is better)
Translates to: GITILTCLQAACNRVKRHSAVIK*QYVLVS
Trigger: AGATACAAGGACATACTGCCATTTGATCACAGCCGA...ATGTCTCTTAACCCTGTTACACGCTGCTTGTAGACATGTTAATATAGTAATACC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000248594.11
ENST00000435495.6
CDS-3UTR CCA 90 bp TCTTTTTCTCCAGTGGCTGTGGGATATATCTTTTCTGTTCTATATTTGGTAGACTCGGCTGTGATCAAATaGCAGTATGTCCTTGTATCT +
Preference number: 4 (lower is better)
Translates to: SFSPVAVGYIFSVLYLVDSAVIK*QYVLVS
Trigger: AGATACAAGGACATACTGCCATTTGATCACAGCCGA...GTCTACCAAATATAGAACAGAAAAGATATATCCCACAGCCACTGGAGAAAAAGA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000523952.5
CDS-3UTR CCA 90 bp AAGCAGCGTGTAACAGGGTTAAGAGACATTAAGGCAATAATACTTGAAGTTTCAAACACTGGCTTTGGATaGTATCTATCATTGTCCTGC +
Preference number: 4 (lower is better)
Translates to: KQRVTGLRDIKAIILEVSNTGFG*YLSLSC
Trigger: GCAGGACAATGATAGATACCATCCAAAGCCAGTGTT...TGAAACTTCAAGTATTATTGCCTTAATGTCTCTTAACCCTGTTACACGCTGCTT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000248594.11
ENST00000435495.6
CDS-3UTR CCA 90 bp AAAGGTATTACTATATTAACATGTCTACAAGCAGCGTGTAACAGGGTTAAGAGACTTTTTGGTCCCTCTTaGAGAGGGACCTTCTTAATC +
Preference number: 4 (lower is better)
Translates to: KGITILTCLQAACNRVKRLFGPS*RGTFLI
Trigger: GATTAAGAAGGTCCCTCTCCAAGAGGGACCAAAAAG...TCTCTTAACCCTGTTACACGCTGCTTGTAGACATGTTAATATAGTAATACCTTT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000248594.11
ENST00000435495.6
CDS-3UTR CCA 90 bp AAAGGTATTACTATATTAACATGTCTACAAGCAGCGTGTAACAGGGTTAAGAGAGGTGTGTCTGAATTCTaGGATTCTTCTGGTGGAGTA +
Preference number: 4 (lower is better)
Translates to: KGITILTCLQAACNRVKRGVSEF*DSSGGV
Trigger: TACTCCACCAGAAGAATCCCAGAATTCAGACACACC...TCTCTTAACCCTGTTACACGCTGCTTGTAGACATGTTAATATAGTAATACCTTT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000248594.11
ENST00000435495.6
CDS-3UTR CCA 90 bp GGTATTACTATATTAACATGTCTACAAGCAGCGTGTAACAGGGTTAAGAGACATGTCATCAGAGTGAAGTaGATTAGTAAAACTGAGGGG +
Preference number: 4 (lower is better)
Translates to: GITILTCLQAACNRVKRHVIRVK*ISKTEG
Trigger: CCCCTCAGTTTTACTAATCCACTTCACTCTGATGAC...ATGTCTCTTAACCCTGTTACACGCTGCTTGTAGACATGTTAATATAGTAATACC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000248594.11
ENST00000435495.6
CDS-3UTR CCA 90 bp ATCTCTGATAACCTGCAAAGCTGGCTGCATGAATCCAGCAAGTTTAAAATTCAGATATTAGTTTTATTCTaGGTCACAGCACCATCAGAG +
Preference number: 4 (lower is better)
Translates to: ISDNLQSWLHESSKFKIQILVLF*VTAPSE
Trigger: CTCTGATGGTGCTGTGACCCAGAATAAAACTAATAT...CTGAATTTTAAACTTGCTGGATTCATGCAGCCAGCTTTGCAGGTTATCAGAGAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000248594.11
CDS-3UTR CCA 90 bp GGTATTACTATATTAACATGTCTACAAGCAGCGTGTAACAGGGTTAAGAGACATTGGCAGCAGAAACTGTaGCACTTGCTGTTGAAATAT +
Preference number: 4 (lower is better)
Translates to: GITILTCLQAACNRVKRHWQQKL*HLLLKY
Trigger: ATATTTCAACAGCAAGTGCCACAGTTTCTGCTGCCA...ATGTCTCTTAACCCTGTTACACGCTGCTTGTAGACATGTTAATATAGTAATACC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000248594.11
ENST00000435495.6
CDS-3UTR CCA 90 bp GGTATTACTATATTAACATGTCTACAAGCAGCGTGTAACAGGGTTAAGAGACATGTGAATACCTCCCGCTaGATGATCACATTTCTCATT +
Preference number: 4 (lower is better)
Translates to: GITILTCLQAACNRVKRHVNTSR*MITFLI
Trigger: AATGAGAAATGTGATCATCCAGCGGGAGGTATTCAC...ATGTCTCTTAACCCTGTTACACGCTGCTTGTAGACATGTTAATATAGTAATACC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000248594.11
ENST00000435495.6
CDS-3UTR CCA 90 bp TCTCTGATAACCTGCAAAGCTGGCTGCATGAATCCAGCAAGTTTAAAATTCAGACAAAACCAATATCTGTaGCTTCTGTTGGATTTTCTG +
Preference number: 4 (lower is better)
Translates to: SLITCKAGCMNPASLKFRQNQYL*LLLDFL
Trigger: CAGAAAATCCAACAGAAGCCACAGATATTGGTTTTG...TCTGAATTTTAAACTTGCTGGATTCATGCAGCCAGCTTTGCAGGTTATCAGAGA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000248594.11
CDS-3UTR CCA 90 bp CCATATGTAATACTTTTTCCTAAGTGTAGTATAAGGCAGGTAGATGGTCCCAGCCAAAACCAATATCTGTaGCTTCTGTTGGATTTTCTG +
Preference number: 4 (lower is better)
Translates to: PYVILFPKCSIRQVDGPSQNQYL*LLLDFL
Trigger: CAGAAAATCCAACAGAAGCCACAGATATTGGTTTTG...GCTGGGACCATCTACCTGCCTTATACTACACTTAGGAAAAAGTATTACATATGG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000248594.11
ENST00000435495.6
CDS-3UTR CCA 90 bp AAGCAGCGTGTAACAGGGTTAAGAGACATTAAGGCAATAATACTTGAAGTTTCAGATCTCTTGGTCCTTTaGGTTTTCCACATCGATTAC +
Preference number: 4 (lower is better)
Translates to: KQRVTGLRDIKAIILEVSDLLVL*VFHIDY
Trigger: GTAATCGATGTGGAAAACCCAAAGGACCAAGAGATC...TGAAACTTCAAGTATTATTGCCTTAATGTCTCTTAACCCTGTTACACGCTGCTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000248594.11
ENST00000435495.6
CDS-3UTR TCA 90 bp AAAGGTATTACTATATTAACATGTCTACAAGCAGCGTGTAACAGGGTTAAGAGATTCAGGTCCATGAAATaGCCACGTTACATGTCCTTT +
Preference number: 4 (lower is better)
Translates to: KGITILTCLQAACNRVKRFRSMK*PRYMSF
Trigger: AAAGGACATGTAACGTGGTCATTTCATGGACCTGAA...TCTCTTAACCCTGTTACACGCTGCTTGTAGACATGTTAATATAGTAATACCTTT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000248594.11
ENST00000435495.6
CDS-3UTR TCA 90 bp AAAGGTATTACTATATTAACATGTCTACAAGCAGCGTGTAACAGGGTTAAGAGATGTTCTGAAGAGTGGTaGAGTGTTATCATGATCCAC +
Preference number: 4 (lower is better)
Translates to: KGITILTCLQAACNRVKRCSEEW*SVIMIH
Trigger: GTGGATCATGATAACACTTCACCACTCTTCAGAACA...TCTCTTAACCCTGTTACACGCTGCTTGTAGACATGTTAATATAGTAATACCTTT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000248594.11
ENST00000435495.6
CDS-3UTR TCA 90 bp GGTATTACTATATTAACATGTCTACAAGCAGCGTGTAACAGGGTTAAGAGACATATCTTTTTCAGCACCTaGATGTGTTGTTCCTGCTAT +
Preference number: 4 (lower is better)
Translates to: GITILTCLQAACNRVKRHIFFST*MCCSCY
Trigger: ATAGCAGGAACAACACATTCAGGTGCTGAAAAAGAT...ATGTCTCTTAACCCTGTTACACGCTGCTTGTAGACATGTTAATATAGTAATACC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000248594.11
ENST00000435495.6
CDS-3UTR GCA 90 bp CCATATGTAATACTTTTTCCTAAGTGTAGTATAAGGCAGGTAGATGGTCCCAGCAGAAATTTTAAATGGTaGAAACGTTATGGGGTCTTC +
Preference number: 4 (lower is better)
Translates to: PYVILFPKCSIRQVDGPSRNFKW*KRYGVF
Trigger: GAAGACCCCATAACGTTTGCACCATTTAAAATTTCT...GCTGGGACCATCTACCTGCCTTATACTACACTTAGGAAAAAGTATTACATATGG
38% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000248594.11
ENST00000435495.6
CDS-3UTR GCA 90 bp AAGCAGCGTGTAACAGGGTTAAGAGACATTAAGGCAATAATACTTGAAGTTTCAGAAGTAGTCTGTTCTTaGTTGTTCATCCTCACAAGA +
Preference number: 4 (lower is better)
Translates to: KQRVTGLRDIKAIILEVSEVVCS*LFILTR
Trigger: TCTTGTGAGGATGAACAAGCAAGAACAGACTACTTC...TGAAACTTCAAGTATTATTGCCTTAATGTCTCTTAACCCTGTTACACGCTGCTT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000248594.11
ENST00000435495.6
CDS-3UTR GCA 90 bp AAAGGTATTACTATATTAACATGTCTACAAGCAGCGTGTAACAGGGTTAAGAGATCTGATGAAACCATATaGAACACTGGCTTTGGATGG +
Preference number: 4 (lower is better)
Translates to: KGITILTCLQAACNRVKRSDETI*NTGFGW
Trigger: CCATCCAAAGCCAGTGTTGCATATGGTTTCATCAGA...TCTCTTAACCCTGTTACACGCTGCTTGTAGACATGTTAATATAGTAATACCTTT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000248594.11
ENST00000435495.6
CDS-3UTR CCA 90 bp AAAGGTATTACTATATTAACATGTCTACAAGCAGCGTGTAACAGGGTTAAGAGATGCTACATATGCTTTTaGCCCATAGACGCCCTTTAT +
Preference number: 4 (lower is better)
Translates to: KGITILTCLQAACNRVKRCYICF*PIDALY
Trigger: ATAAAGGGCGTCTATGGGCCAAAAGCATATGTAGCA...TCTCTTAACCCTGTTACACGCTGCTTGTAGACATGTTAATATAGTAATACCTTT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000248594.11
CDS-3UTR CCA 90 bp AAAGGTATTACTATATTAACATGTCTACAAGCAGCGTGTAACAGGGTTAAGAGAATGGTGCAAACGTTATaGGGTCTTCTCCATACAAAG +
Preference number: 4 (lower is better)
Translates to: KGITILTCLQAACNRVKRMVQTL*GLLHTK
Trigger: CTTTGTATGGAGAAGACCCCATAACGTTTGCACCAT...TCTCTTAACCCTGTTACACGCTGCTTGTAGACATGTTAATATAGTAATACCTTT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000248594.11
ENST00000435495.6
CDS-3UTR CCA 90 bp ATCTCTGATAACCTGCAAAGCTGGCTGCATGAATCCAGCAAGTTTAAAATTCAGACAAGAAATTTTAAATaGTGCAAACGTTATGGGGTC +
Preference number: 4 (lower is better)
Translates to: ISDNLQSWLHESSKFKIQTRNFK*CKRYGV
Trigger: GACCCCATAACGTTTGCACCATTTAAAATTTCTTGT...CTGAATTTTAAACTTGCTGGATTCATGCAGCCAGCTTTGCAGGTTATCAGAGAT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000248594.11
CDS-3UTR CCA 90 bp AAAGGTATTACTATATTAACATGTCTACAAGCAGCGTGTAACAGGGTTAAGAGAAACACTGGCTTTGGATaGTATCTATCATTGTCCTGC +
Preference number: 4 (lower is better)
Translates to: KGITILTCLQAACNRVKRNTGFG*YLSLSC
Trigger: GCAGGACAATGATAGATACCATCCAAAGCCAGTGTT...TCTCTTAACCCTGTTACACGCTGCTTGTAGACATGTTAATATAGTAATACCTTT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000248594.11
ENST00000435495.6
CDS-3UTR CCA 90 bp GGTATTACTATATTAACATGTCTACAAGCAGCGTGTAACAGGGTTAAGAGACATATGCAACACTGGCTTTaGATGGTATCTATCATTGTC +
Preference number: 4 (lower is better)
Translates to: GITILTCLQAACNRVKRHMQHWL*MVSIIV
Trigger: GACAATGATAGATACCATCCAAAGCCAGTGTTGCAT...ATGTCTCTTAACCCTGTTACACGCTGCTTGTAGACATGTTAATATAGTAATACC
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000248594.11
ENST00000435495.6
CDS-3UTR CCA 90 bp AAGCAGCGTGTAACAGGGTTAAGAGACATTAAGGCAATAATACTTGAAGTTTCATCCACACAAGAATTCTaGGAAGTATCACCGACATTT +
Preference number: 4 (lower is better)
Translates to: KQRVTGLRDIKAIILEVSSTQEF*EVSPTF
Trigger: AAATGTCGGTGATACTTCCCAGAATTCTTGTGTGGA...TGAAACTTCAAGTATTATTGCCTTAATGTCTCTTAACCCTGTTACACGCTGCTT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000248594.11
ENST00000435495.6
CDS-3UTR CCA 90 bp GGTATTACTATATTAACATGTCTACAAGCAGCGTGTAACAGGGTTAAGAGACATAATCAGGTATGGGTATaGCATTTTCAGGTCCATGAA +
Preference number: 4 (lower is better)
Translates to: GITILTCLQAACNRVKRHNQVWV*HFQVHE
Trigger: TTCATGGACCTGAAAATGCCATACCCATACCTGATT...ATGTCTCTTAACCCTGTTACACGCTGCTTGTAGACATGTTAATATAGTAATACC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000248594.11
ENST00000435495.6
CDS-3UTR CCA 90 bp AAAGGTATTACTATATTAACATGTCTACAAGCAGCGTGTAACAGGGTTAAGAGAGATCTCTTGGTCCTTTaGGTTTTCCACATCGATTAC +
Preference number: 4 (lower is better)
Translates to: KGITILTCLQAACNRVKRDLLVL*VFHIDY
Trigger: GTAATCGATGTGGAAAACCCAAAGGACCAAGAGATC...TCTCTTAACCCTGTTACACGCTGCTTGTAGACATGTTAATATAGTAATACCTTT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000248594.11
ENST00000435495.6
CDS-3UTR TCA 90 bp GGTATTACTATATTAACATGTCTACAAGCAGCGTGTAACAGGGTTAAGAGACATTTTGCTAAAGGTCCTTaGGTTGCTACATATGCTTTT +
Preference number: 4 (lower is better)
Translates to: GITILTCLQAACNRVKRHFAKGP*VATYAF
Trigger: AAAAGCATATGTAGCAACTCAAGGACCTTTAGCAAA...ATGTCTCTTAACCCTGTTACACGCTGCTTGTAGACATGTTAATATAGTAATACC
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000248594.11
CDS-3UTR TCA 90 bp AAAGGTATTACTATATTAACATGTCTACAAGCAGCGTGTAACAGGGTTAAGAGAGCTTTCAGTGGCACCTaGATTTTCCAGTATAACTTA +
Preference number: 4 (lower is better)
Translates to: KGITILTCLQAACNRVKRAFSGT*IFQYNL
Trigger: TAAGTTATACTGGAAAATTCAGGTGCCACTGAAAGC...TCTCTTAACCCTGTTACACGCTGCTTGTAGACATGTTAATATAGTAATACCTTT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000248594.11
ENST00000435495.6
CDS-3UTR GCA 90 bp AAAGGTATTACTATATTAACATGTCTACAAGCAGCGTGTAACAGGGTTAAGAGACTCCTTTGTTTGTACTaGAGAATGCCTTTGTGTTCT +
Preference number: 4 (lower is better)
Translates to: KGITILTCLQAACNRVKRLLCLY*RMPLCS
Trigger: AGAACACAAAGGCATTCTGCAGTACAAACAAAGGAG...TCTCTTAACCCTGTTACACGCTGCTTGTAGACATGTTAATATAGTAATACCTTT
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000248594.11
ENST00000435495.6
CDS-3UTR GCA 90 bp AAAGGTATTACTATATTAACATGTCTACAAGCAGCGTGTAACAGGGTTAAGAGATATCTATCATTGTCCTaGCACACAGTAGTGACTGTT +
Preference number: 4 (lower is better)
Translates to: KGITILTCLQAACNRVKRYLSLS*HTVVTV
Trigger: AACAGTCACTACTGTGTGGCAGGACAATGATAGATA...TCTCTTAACCCTGTTACACGCTGCTTGTAGACATGTTAATATAGTAATACCTTT
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000248594.11
ENST00000435495.6
CDS-3UTR CCA 90 bp TCTTTTTCTCCAGTGGCTGTGGGATATATCTTTTCTGTTCTATATTTGGTAGACCTTCTTTTTCTCCAGTaGCTGTGGGATATATCTTTT +
Preference number: 4 (lower is better)
Translates to: SFSPVAVGYIFSVLYLVDLLFLQ*LWDISF
Trigger: AAAAGATATATCCCACAGCCACTGGAGAAAAAGAAG...GTCTACCAAATATAGAACAGAAAAGATATATCCCACAGCCACTGGAGAAAAAGA
37% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENST00000523952.5
CDS-3UTR CCA 90 bp TTTTCCCAGCTTTTAGTAAATTCCACGTATAATCTATGGCACAAATGGCACCTGACAAGAAATTTTAAATaGTGCAAACGTTATGGGGTC +
Preference number: 4 (lower is better)
Translates to: FSQLLVNSTYNLWHKWHLTRNFK*CKRYGV
Trigger: GACCCCATAACGTTTGCACCATTTAAAATTTCTTGT...CAGGTGCCATTTGTGCCATAGATTATACGTGGAATTTACTAAAAGCTGGGAAAA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENST00000447995.2
CDS-3UTR CCA 90 bp AAAGGTATTACTATATTAACATGTCTACAAGCAGCGTGTAACAGGGTTAAGAGAAATCAGGTATGGGTATaGCATTTTCAGGTCCATGAA +
Preference number: 4 (lower is better)
Translates to: KGITILTCLQAACNRVKRNQVWV*HFQVHE
Trigger: TTCATGGACCTGAAAATGCCATACCCATACCTGATT...TCTCTTAACCCTGTTACACGCTGCTTGTAGACATGTTAATATAGTAATACCTTT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000248594.11
ENST00000435495.6
CDS-3UTR CCA 90 bp AAGCAGCGTGTAACAGGGTTAAGAGACATTAAGGCAATAATACTTGAAGTTTCAATATTAGTTTTATTCTaGGTCACAGCACCATCAGAG +
Preference number: 4 (lower is better)
Translates to: KQRVTGLRDIKAIILEVSILVLF*VTAPSE
Trigger: CTCTGATGGTGCTGTGACCCAGAATAAAACTAATAT...TGAAACTTCAAGTATTATTGCCTTAATGTCTCTTAACCCTGTTACACGCTGCTT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000248594.11
ENST00000435495.6
CDS-3UTR CCA 90 bp GGTATTACTATATTAACATGTCTACAAGCAGCGTGTAACAGGGTTAAGAGACATTCTAGCAATGGACATTaGCAATACTTTCCTAGTAGA +
Preference number: 4 (lower is better)
Translates to: GITILTCLQAACNRVKRHSSNGH*QYFPSR
Trigger: TCTACTAGGAAAGTATTGCCAATGTCCATTGCTAGA...ATGTCTCTTAACCCTGTTACACGCTGCTTGTAGACATGTTAATATAGTAATACC
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000248594.11
ENST00000435495.6
CDS-3UTR CCA 90 bp AAGCAGCGTGTAACAGGGTTAAGAGACATTAAGGCAATAATACTTGAAGTTTCATCTAGCAATGGACATTaGCAATACTTTCCTAGTAGA +
Preference number: 4 (lower is better)
Translates to: KQRVTGLRDIKAIILEVSSSNGH*QYFPSR
Trigger: TCTACTAGGAAAGTATTGCCAATGTCCATTGCTAGA...TGAAACTTCAAGTATTATTGCCTTAATGTCTCTTAACCCTGTTACACGCTGCTT
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000248594.11
ENST00000435495.6
CDS-3UTR CCA 90 bp AAAGGTATTACTATATTAACATGTCTACAAGCAGCGTGTAACAGGGTTAAGAGAAAATCTGGCTTTCAGTaGCACCTGAATTTTCCAGTA +
Preference number: 4 (lower is better)
Translates to: KGITILTCLQAACNRVKRKSGFQ*HLNFPV
Trigger: TACTGGAAAATTCAGGTGCCACTGAAAGCCAGATTT...TCTCTTAACCCTGTTACACGCTGCTTGTAGACATGTTAATATAGTAATACCTTT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000248594.11
ENST00000435495.6
CDS-3UTR CCA 90 bp AAAGGTATTACTATATTAACATGTCTACAAGCAGCGTGTAACAGGGTTAAGAGACTTCTTTTTCTCCAGTaGCTGTGGGATATATCTTTT +
Preference number: 4 (lower is better)
Translates to: KGITILTCLQAACNRVKRLLFLQ*LWDISF
Trigger: AAAAGATATATCCCACAGCCACTGGAGAAAAAGAAG...TCTCTTAACCCTGTTACACGCTGCTTGTAGACATGTTAATATAGTAATACCTTT
36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000248594.11
ENST00000435495.6
CDS-3UTR CCA 90 bp AAGCAGCGTGTAACAGGGTTAAGAGACATTAAGGCAATAATACTTGAAGTTTCAACAAGAAATTTTAAATaGTGCAAACGTTATGGGGTC +
Preference number: 4 (lower is better)
Translates to: KQRVTGLRDIKAIILEVSTRNFK*CKRYGV
Trigger: GACCCCATAACGTTTGCACCATTTAAAATTTCTTGT...TGAAACTTCAAGTATTATTGCCTTAATGTCTCTTAACCCTGTTACACGCTGCTT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000248594.11
ENST00000435495.6
CDS TCA 90 bp CCTCCCCATTGTGGTCAGGACTCTTCATGGCCTGGACCCTCTGGATaGATTTCCTCAGGATCTCCACTTGCTCCATCCTCCCGCGTCCCC +
Preference number: 5 (lower is better)
Translates to: PPHCGQDSSWPGPSG*ISSGSPLAPSSRVP
Trigger: GGGGACGCGGGAGGATGGAGCAAGTGGAGATCCTGAGGAAATTCATCCAGAGGGTCCAGGCCATGAAGAGTCCTGACCACAATGGGGAGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000248594.11
ENST00000460731.5
CDS CCA 90 bp TTGTCCTCCCCATTGTGGTCAGGACTCTTCATGGCCTGGACCCTCTaGATGAATTTCCTCAGGATCTCCACTTGCTCCATCCTCCCGCGT +
Preference number: 5 (lower is better)
Translates to: LSSPLWSGLFMAWTL*MNFLRISTCSILPR
Trigger: ACGCGGGAGGATGGAGCAAGTGGAGATCCTGAGGAAATTCATCCAGAGGGTCCAGGCCATGAAGAGTCCTGACCACAATGGGGAGGACAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000248594.11
ENST00000460731.5
CDS CCA 90 bp CGGGCGAAGTTGTCCTCCCCATTGTGGTCAGGACTCTTCATGGCCTaGACCCTCTGGATGAATTTCCTCAGGATCTCCACTTGCTCCATC +
Preference number: 5 (lower is better)
Translates to: RAKLSSPLWSGLFMA*TLWMNFLRISTCSI
Trigger: GATGGAGCAAGTGGAGATCCTGAGGAAATTCATCCAGAGGGTCCAGGCCATGAAGAGTCCTGACCACAATGGGGAGGACAACTTCGCCCG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000248594.11
ENST00000460731.5
CDS CCA 90 bp CAGAGCTCCATCATGAAGTCCCGGGCGAAGTTGTCCTCCCCATTGTaGTCAGGACTCTTCATGGCCTGGACCCTCTGGATGAATTTCCTC +
Preference number: 5 (lower is better)
Translates to: QSSIMKSRAKLSSPL*SGLFMAWTLWMNFL
Trigger: GAGGAAATTCATCCAGAGGGTCCAGGCCATGAAGAGTCCTGACCACAATGGGGAGGACAACTTCGCCCGGGACTTCATGATGGAGCTCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000523952.5
CDS CCA 90 bp CTTCTTAACCGCATGAAGTCCCGGGCGAAGTTGTCCTCCCCATTGTaGTCAGGACTCTTCATGGCCTGGACCCTCTGGATGAATTTCCTC +
Preference number: 5 (lower is better)
Translates to: LLNRMKSRAKLSSPL*SGLFMAWTLWMNFL
Trigger: GAGGAAATTCATCCAGAGGGTCCAGGCCATGAAGAGTCCTGACCACAATGGGGAGGACAACTTCGCCCGGGACTTCATGCGGTTAAGAAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000248594.11
ENST00000460731.5
CDS-3UTR CAA 90 bp TCTCTGATAACCTGCAAAGCTGGCTGCATGAATCCAGCAAGTTTAAAATTCAGAGGCAACTGCGGGTCCTaGGTGGTTTTGGAGGAGGAG +
Preference number: 5 (lower is better)
Translates to: SLITCKAGCMNPASLKFRGNCGS*VVLEEE
Trigger: CTCCTCCTCCAAAACCACCAAGGACCCGCAGTTGCC...TCTGAATTTTAAACTTGCTGGATTCATGCAGCCAGCTTTGCAGGTTATCAGAGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000248594.11
CDS-3UTR CAA 90 bp AAGCAGCGTGTAACAGGGTTAAGAGACATTAAGGCAATAATACTTGAAGTTTCACCTCAGGATCTCCACTaGCTCCATCCTCCCGCGTCC +
Preference number: 5 (lower is better)
Translates to: KQRVTGLRDIKAIILEVSPQDLH*LHPPAS
Trigger: GGACGCGGGAGGATGGAGCAAGTGGAGATCCTGAGG...TGAAACTTCAAGTATTATTGCCTTAATGTCTCTTAACCCTGTTACACGCTGCTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000248594.11
CDS GCA 90 bp GAAACCATATGCAACACTGGCTTTGGATGGTATCTATCATTGTCCTaGCACACAGTAGTGACTGTTGGAAAAGCTGAAGGGGGAGAAGGT +
Preference number: 5 (lower is better)
Translates to: ETICNTGFGWYLSLS*HTVVTVGKAEGGEG
Trigger: ACCTTCTCCCCCTTCAGCTTTTCCAACAGTCACTACTGTGTGGCAGGACAATGATAGATACCATCCAAAGCCAGTGTTGCATATGGTTTC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000248594.11
ENST00000415482.6
ENST00000435495.6
CDS-3UTR CAA 90 bp AAGCAGCGTGTAACAGGGTTAAGAGACATTAAGGCAATAATACTTGAAGTTTCAGGCAACTGCGGGTCCTaGGTGGTTTTGGAGGAGGAG +
Preference number: 5 (lower is better)
Translates to: KQRVTGLRDIKAIILEVSGNCGS*VVLEEE
Trigger: CTCCTCCTCCAAAACCACCAAGGACCCGCAGTTGCC...TGAAACTTCAAGTATTATTGCCTTAATGTCTCTTAACCCTGTTACACGCTGCTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000248594.11
ENST00000435495.6
CDS-3UTR CAA 90 bp CCATATGTAATACTTTTTCCTAAGTGTAGTATAAGGCAGGTAGATGGTCCCAGCGCAAGCGGTCTGGCCTaGGAGGTGTGTCTGAATTCT +
Preference number: 5 (lower is better)
Translates to: PYVILFPKCSIRQVDGPSASGLA*EVCLNS
Trigger: AGAATTCAGACACACCTCCAAGGCCAGACCGCTTGC...GCTGGGACCATCTACCTGCCTTATACTACACTTAGGAAAAAGTATTACATATGG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000248594.11
ENST00000435495.6
CDS CCA 90 bp TCATCAAGAGGCAAGCGGTCTGGCCTTGGAGGTGTGTCTGAATTCTaGGATTCTTCTGGTGGAGTAACTGAAACTTTGTTTGATTGTGTT +
Preference number: 5 (lower is better)
Translates to: SSRGKRSGLGGVSEF*DSSGGVTETLFDCV
Trigger: AACACAATCAAACAAAGTTTCAGTTACTCCACCAGAAGAATCCCAGAATTCAGACACACCTCCAAGGCCAGACCGCTTGCCTCTTGATGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000248594.11
ENST00000407343.3
ENST00000415482.6
ENST00000435495.6
CDS TCA 90 bp TTGCCTTCAGATAAATCAGGTATGGGTATGGCATTTTCAGGTCCATaGAATGACCACGTTACATGTCCTTTCTCATCAAGAGGCAAGCGG +
Preference number: 5 (lower is better)
Translates to: LPSDKSGMGMAFSGP*NDHVTCPFSSRGKR
Trigger: CCGCTTGCCTCTTGATGAGAAAGGACATGTAACGTGGTCATTTCATGGACCTGAAAATGCCATACCCATACCTGATTTATCTGAAGGCAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000248594.11
ENST00000407343.3
ENST00000415482.6
ENST00000435495.6
CDS-3UTR CAA 90 bp ATCTCTGATAACCTGCAAAGCTGGCTGCATGAATCCAGCAAGTTTAAAATTCAGAAGTTGTCCTCCCCATaGTGGTCAGGACTCTTCATG +
Preference number: 5 (lower is better)
Translates to: ISDNLQSWLHESSKFKIQKLSSP*WSGLFM
Trigger: CATGAAGAGTCCTGACCACAATGGGGAGGACAACTT...CTGAATTTTAAACTTGCTGGATTCATGCAGCCAGCTTTGCAGGTTATCAGAGAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000248594.11
CDS-3UTR CAA 90 bp AAAGGTATTACTATATTAACATGTCTACAAGCAGCGTGTAACAGGGTTAAGAGAAAGTCCCGGGCGAAGTaGTCCTCCCCATTGTGGTCA +
Preference number: 5 (lower is better)
Translates to: KGITILTCLQAACNRVKRKSRAK*SSPLWS
Trigger: TGACCACAATGGGGAGGACAACTTCGCCCGGGACTT...TCTCTTAACCCTGTTACACGCTGCTTGTAGACATGTTAATATAGTAATACCTTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000248594.11
CDS-3UTR CAA 90 bp TTCTTTTTCTCCAGTGGCTGTGGGATATATCTTTTCTGTTCTATATTTGGTAGAAAGTCCCGGGCGAAGTaGTCCTCCCCATTGTGGTCA +
Preference number: 5 (lower is better)
Translates to: FFFSSGCGIYLFCSIFGRKSRAK*SSPLWS
Trigger: TGACCACAATGGGGAGGACAACTTCGCCCGGGACTT...TCTACCAAATATAGAACAGAAAAGATATATCCCACAGCCACTGGAGAAAAAGAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000523952.5
CDS-3UTR CAA 90 bp CCATATGTAATACTTTTTCCTAAGTGTAGTATAAGGCAGGTAGATGGTCCCAGCGGGTCCTTGGTGGTTTaGGAGGAGGAGAATCTTGTT +
Preference number: 5 (lower is better)
Translates to: PYVILFPKCSIRQVDGPSGSLVV*EEENLV
Trigger: AACAAGATTCTCCTCCTCCAAAACCACCAAGGACCC...GCTGGGACCATCTACCTGCCTTATACTACACTTAGGAAAAAGTATTACATATGG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000248594.11
ENST00000435495.6
CDS-3UTR CAA 90 bp TTATTACAATCTTTGATCTCTGATAACCTGCAAAGCTGGCTGCATGAATCCAGCCTGAAGGTGGATCTCTaGGTCCTTTGGGTTTTCCAC +
Preference number: 5 (lower is better)
Translates to: LLQSLISDNLQSWLHESSLKVDL*VLWVFH
Trigger: GTGGAAAACCCAAAGGACCAAGAGATCCACCTTCAG...GCTGGATTCATGCAGCCAGCTTTGCAGGTTATCAGAGATCAAAGATTGTAATAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000248594.11
CDS TCA 90 bp ACAGCACCATCAGAGTTTCTTTCATCTGAGTCTGAGTCATCAGAGTaGAGTGGATTAGTAAAACTGAGGGGTGTTCTGAAGAGTGGTGAA +
Preference number: 5 (lower is better)
Translates to: TAPSEFLSSESESSE*SGLVKLRGVLKSGE
Trigger: TTCACCACTCTTCAGAACACCCCTCAGTTTTACTAATCCACTTCACTCTGATGACTCAGACTCAGATGAAAGAAACTCTGATGGTGCTGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000248594.11
ENST00000407343.3
ENST00000415482.6
ENST00000435495.6
CDS-3UTR CAA 90 bp CCATATGTAATACTTTTTCCTAAGTGTAGTATAAGGCAGGTAGATGGTCCCAGCGGATGGTATCTATCATaGTCCTGCCACACAGTAGTG +
Preference number: 5 (lower is better)
Translates to: PYVILFPKCSIRQVDGPSGWYLS*SCHTVV
Trigger: CACTACTGTGTGGCAGGACAATGATAGATACCATCC...GCTGGGACCATCTACCTGCCTTATACTACACTTAGGAAAAAGTATTACATATGG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000248594.11
ENST00000435495.6
CDS-3UTR CAA 90 bp TCTCTGATAACCTGCAAAGCTGGCTGCATGAATCCAGCAAGTTTAAAATTCAGATCCCATCAAAACTTTTaGGTCCCTCTTGGAGAGGGA +
Preference number: 5 (lower is better)
Translates to: SLITCKAGCMNPASLKFRSHQNF*VPLGEG
Trigger: TCCCTCTCCAAGAGGGACCAAAAAGTTTTGATGGGA...TCTGAATTTTAAACTTGCTGGATTCATGCAGCCAGCTTTGCAGGTTATCAGAGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000248594.11
CDS-3UTR CAA 90 bp AAAGGTATTACTATATTAACATGTCTACAAGCAGCGTGTAACAGGGTTAAGAGAGCAAGCGGTCTGGCCTaGGAGGTGTGTCTGAATTCT +
Preference number: 5 (lower is better)
Translates to: KGITILTCLQAACNRVKRASGLA*EVCLNS
Trigger: AGAATTCAGACACACCTCCAAGGCCAGACCGCTTGC...TCTCTTAACCCTGTTACACGCTGCTTGTAGACATGTTAATATAGTAATACCTTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000248594.11
ENST00000435495.6
CDS CCA 90 bp GCTGAATGTTGTTCTGATGAAACCATATGCAACACTGGCTTTGGATaGTATCTATCATTGTCCTGCCACACAGTAGTGACTGTTGGAAAA +
Preference number: 5 (lower is better)
Translates to: AECCSDETICNTGFG*YLSLSCHTVVTVGK
Trigger: TTTTCCAACAGTCACTACTGTGTGGCAGGACAATGATAGATACCATCCAAAGCCAGTGTTGCATATGGTTTCATCAGAACAACATTCAGC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000248594.11
ENST00000415482.6
ENST00000435495.6
CDS CCA 90 bp GCAGCAGAAACTGTGGCACTTGCTGTTGAAATATTAGTTTTATTCTaGGTCACAGCACCATCAGAGTTTCTTTCATCTGAGTCTGAGTCA +
Preference number: 5 (lower is better)
Translates to: AAETVALAVEILVLF*VTAPSEFLSSESES
Trigger: TGACTCAGACTCAGATGAAAGAAACTCTGATGGTGCTGTGACCCAGAATAAAACTAATATTTCAACAGCAAGTGCCACAGTTTCTGCTGC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000248594.11
ENST00000407343.3
ENST00000415482.6
ENST00000435495.6
CDS-3UTR CAA 90 bp TCTTTTTCTCCAGTGGCTGTGGGATATATCTTTTCTGTTCTATATTTGGTAGACAAGTTGTCCTCCCCATaGTGGTCAGGACTCTTCATG +
Preference number: 5 (lower is better)
Translates to: SFSPVAVGYIFSVLYLVDKLSSP*WSGLFM
Trigger: CATGAAGAGTCCTGACCACAATGGGGAGGACAACTT...GTCTACCAAATATAGAACAGAAAAGATATATCCCACAGCCACTGGAGAAAAAGA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000523952.5
CDS-3UTR CAA 90 bp ATCTCTGATAACCTGCAAAGCTGGCTGCATGAATCCAGCAAGTTTAAAATTCAGTGGAGGAGGAGAATCTaGTTTTTCAGGCTCTATGGA +
Preference number: 5 (lower is better)
Translates to: ISDNLQSWLHESSKFKIQWRRRI*FFRLYG
Trigger: TCCATAGAGCCTGAAAAACAAGATTCTCCTCCTCCA...CTGAATTTTAAACTTGCTGGATTCATGCAGCCAGCTTTGCAGGTTATCAGAGAT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000248594.11
CDS-3UTR CAA 90 bp CCATATGTAATACTTTTTCCTAAGTGTAGTATAAGGCAGGTAGATGGTCCCAGCTGGAGGAGGAGAATCTaGTTTTTCAGGCTCTATGGA +
Preference number: 5 (lower is better)
Translates to: PYVILFPKCSIRQVDGPSWRRRI*FFRLYG
Trigger: TCCATAGAGCCTGAAAAACAAGATTCTCCTCCTCCA...GCTGGGACCATCTACCTGCCTTATACTACACTTAGGAAAAAGTATTACATATGG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000248594.11
ENST00000435495.6
CDS-3UTR CAA 90 bp GGTATTACTATATTAACATGTCTACAAGCAGCGTGTAACAGGGTTAAGAGACATGGGTCCTTGGTGGTTTaGGAGGAGGAGAATCTTGTT +
Preference number: 5 (lower is better)
Translates to: GITILTCLQAACNRVKRHGSLVV*EEENLV
Trigger: AACAAGATTCTCCTCCTCCAAAACCACCAAGGACCC...ATGTCTCTTAACCCTGTTACACGCTGCTTGTAGACATGTTAATATAGTAATACC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000248594.11
ENST00000435495.6
CDS-3UTR CAA 90 bp ATCTCTGATAACCTGCAAAGCTGGCTGCATGAATCCAGCAAGTTTAAAATTCAGAGATCGTTCCTGACTTaGAAGTTCACTCCATTCCGA +
Preference number: 5 (lower is better)
Translates to: ISDNLQSWLHESSKFKIQRSFLT*KFTPFR
Trigger: TCGGAATGGAGTGAACTTCAAAGTCAGGAACGATCT...CTGAATTTTAAACTTGCTGGATTCATGCAGCCAGCTTTGCAGGTTATCAGAGAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000248594.11
CDS-3UTR CAA 90 bp CCATATGTAATACTTTTTCCTAAGTGTAGTATAAGGCAGGTAGATGGTCCCAGCGGATCTCTTGGTCCTTaGGGTTTTCCACATCGATTA +
Preference number: 5 (lower is better)
Translates to: PYVILFPKCSIRQVDGPSGSLGP*GFPHRL
Trigger: TAATCGATGTGGAAAACCCAAAGGACCAAGAGATCC...GCTGGGACCATCTACCTGCCTTATACTACACTTAGGAAAAAGTATTACATATGG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000248594.11
ENST00000435495.6
CDS-3UTR CAA 90 bp AAGCAGCGTGTAACAGGGTTAAGAGACATTAAGGCAATAATACTTGAAGTTTCACTGAAGGTGGATCTCTaGGTCCTTTGGGTTTTCCAC +
Preference number: 5 (lower is better)
Translates to: KQRVTGLRDIKAIILEVSLKVDL*VLWVFH
Trigger: GTGGAAAACCCAAAGGACCAAGAGATCCACCTTCAG...TGAAACTTCAAGTATTATTGCCTTAATGTCTCTTAACCCTGTTACACGCTGCTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000248594.11
ENST00000435495.6
CDS TCA 90 bp AGAGTGAAGTGGATTAGTAAAACTGAGGGGTGTTCTGAAGAGTGGTaGAGTGTTATCATGATCCACAAGATCAGGTGTTTCAACTTGTGT +
Preference number: 5 (lower is better)
Translates to: RVKWISKTEGCSEEW*SVIMIHKIRCFNLC
Trigger: ACACAAGTTGAAACACCTGATCTTGTGGATCATGATAACACTTCACCACTCTTCAGAACACCCCTCAGTTTTACTAATCCACTTCACTCT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000248594.11
ENST00000407343.3
ENST00000415482.6
ENST00000435495.6
CDS TCA 90 bp AATGCTTTCAGTACTAGTGGCAGCAGAAACTGTGGCACTTGCTGTTaGAATATTAGTTTTATTCTGGGTCACAGCACCATCAGAGTTTCT +
Preference number: 5 (lower is better)
Translates to: NAFSTSGSRNCGTCC*NISFILGHSTIRVS
Trigger: AGAAACTCTGATGGTGCTGTGACCCAGAATAAAACTAATATTTCAACAGCAAGTGCCACAGTTTCTGCTGCCACTAGTACTGAAAGCATT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000248594.11
ENST00000407343.3
ENST00000415482.6
ENST00000435495.6
CDS-3UTR CAA 90 bp CAGCTTTTAGTAAATTCCACGTATAATCTATGGCACAAATGGCACCTGTTCTTCCTAAAGGTCCTTGAGTaGCTACATATGCTTTTGGCC +
Preference number: 5 (lower is better)
Translates to: QLLVNSTYNLWHKWHLFFLKVLE*LHMLLA
Trigger: GGCCAAAAGCATATGTAGCAACTCAAGGACCTTTAG...GAAGAACAGGTGCCATTTGTGCCATAGATTATACGTGGAATTTACTAAAAGCTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000447995.2
CDS-3UTR CAA 90 bp TCTCTGATAACCTGCAAAGCTGGCTGCATGAATCCAGCAAGTTTAAAATTCAGAGTTCATATTGCTCCTTaGTTTGTACTGCAGAATGCC +
Preference number: 5 (lower is better)
Translates to: SLITCKAGCMNPASLKFRVHIAP*FVLQNA
Trigger: GGCATTCTGCAGTACAAACAAAGGAGCAATATGAAC...TCTGAATTTTAAACTTGCTGGATTCATGCAGCCAGCTTTGCAGGTTATCAGAGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000248594.11
CDS-3UTR CAA 90 bp CCATATGTAATACTTTTTCCTAAGTGTAGTATAAGGCAGGTAGATGGTCCCAGCGTTCATATTGCTCCTTaGTTTGTACTGCAGAATGCC +
Preference number: 5 (lower is better)
Translates to: PYVILFPKCSIRQVDGPSVHIAP*FVLQNA
Trigger: GGCATTCTGCAGTACAAACAAAGGAGCAATATGAAC...GCTGGGACCATCTACCTGCCTTATACTACACTTAGGAAAAAGTATTACATATGG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000248594.11
ENST00000435495.6
CDS-3UTR CAA 90 bp AAGCAGCGTGTAACAGGGTTAAGAGACATTAAGGCAATAATACTTGAAGTTTCAGGATGGTATCTATCATaGTCCTGCCACACAGTAGTG +
Preference number: 5 (lower is better)
Translates to: KQRVTGLRDIKAIILEVSGWYLS*SCHTVV
Trigger: CACTACTGTGTGGCAGGACAATGATAGATACCATCC...TGAAACTTCAAGTATTATTGCCTTAATGTCTCTTAACCCTGTTACACGCTGCTT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000248594.11
ENST00000435495.6
CDS-3UTR CAA 90 bp CCATATGTAATACTTTTTCCTAAGTGTAGTATAAGGCAGGTAGATGGTCCCAGCATCAGGTGTTTCAACTaGTGTTGTAGGACTTGGTGT +
Preference number: 5 (lower is better)
Translates to: PYVILFPKCSIRQVDGPSIRCFN*CCRTWC
Trigger: ACACCAAGTCCTACAACACAAGTTGAAACACCTGAT...GCTGGGACCATCTACCTGCCTTATACTACACTTAGGAAAAAGTATTACATATGG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000248594.11
ENST00000435495.6
CDS-3UTR CAA 90 bp CCATATGTAATACTTTTTCCTAAGTGTAGTATAAGGCAGGTAGATGGTCCCAGCCAGCACCTGAATGTGTaGTTCCTGCTATATTATGTC +
Preference number: 5 (lower is better)
Translates to: PYVILFPKCSIRQVDGPSQHLNV*FLLYYV
Trigger: GACATAATATAGCAGGAACAACACATTCAGGTGCTG...GCTGGGACCATCTACCTGCCTTATACTACACTTAGGAAAAAGTATTACATATGG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000248594.11
ENST00000435495.6
CDS CCA 90 bp GAAACTTTGTTTGATTGTGTTACACTGCAGTCCACACAAGAATTCTaGGAAGTATCACCGACATTTAGATCTGAACTTAATTCCTGTGGC +
Preference number: 5 (lower is better)
Translates to: ETLFDCVTLQSTQEF*EVSPTFRSELNSCG
Trigger: GCCACAGGAATTAAGTTCAGATCTAAATGTCGGTGATACTTCCCAGAATTCTTGTGTGGACTGCAGTGTAACACAATCAAACAAAGTTTC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000248594.11
ENST00000415482.6
ENST00000435495.6
CDS-3UTR CAA 90 bp AAGCAGCGTGTAACAGGGTTAAGAGACATTAAGGCAATAATACTTGAAGTTTCATTGCTACATATGCTTTaGGCCCATAGACGCCCTTTA +
Preference number: 5 (lower is better)
Translates to: KQRVTGLRDIKAIILEVSLLHML*AHRRPL
Trigger: TAAAGGGCGTCTATGGGCCAAAAGCATATGTAGCAA...TGAAACTTCAAGTATTATTGCCTTAATGTCTCTTAACCCTGTTACACGCTGCTT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000248594.11
CDS-3UTR CAA 90 bp TCTCTGATAACCTGCAAAGCTGGCTGCATGAATCCAGCAAGTTTAAAATTCAGAGTAGTCTGTTCTTGCTaGTTCATCCTCACAAGAAAT +
Preference number: 5 (lower is better)
Translates to: SLITCKAGCMNPASLKFRVVCSC*FILTRN
Trigger: ATTTCTTGTGAGGATGAACAAGCAAGAACAGACTAC...TCTGAATTTTAAACTTGCTGGATTCATGCAGCCAGCTTTGCAGGTTATCAGAGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000248594.11
CDS-3UTR CAA 90 bp TTAGTAAATTCCACGTATAATCTATGGCACAAATGGCACCTGTTCTTCCACAGCGTAGTCTGTTCTTGCTaGTTCATCCTCACAAGAAAT +
Preference number: 5 (lower is better)
Translates to: LVNSTYNLWHKWHLFFHSVVCSC*FILTRN
Trigger: ATTTCTTGTGAGGATGAACAAGCAAGAACAGACTAC...GCTGTGGAAGAACAGGTGCCATTTGTGCCATAGATTATACGTGGAATTTACTAA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000447995.2
CDS-3UTR CAA 90 bp TTATTACAATCTTTGATCTCTGATAACCTGCAAAGCTGGCTGCATGAATCCAGCATATTGCTCCTTTGTTaGTACTGCAGAATGCCTTTG +
Preference number: 5 (lower is better)
Translates to: LLQSLISDNLQSWLHESSILLLC*YCRMPL
Trigger: CAAAGGCATTCTGCAGTACAAACAAAGGAGCAATAT...GCTGGATTCATGCAGCCAGCTTTGCAGGTTATCAGAGATCAAAGATTGTAATAA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000248594.11
CDS-3UTR CAA 90 bp CCATATGTAATACTTTTTCCTAAGTGTAGTATAAGGCAGGTAGATGGTCCCAGCTATGCAACACTGGCTTaGGATGGTATCTATCATTGT +
Preference number: 5 (lower is better)
Translates to: PYVILFPKCSIRQVDGPSYATLA*DGIYHC
Trigger: ACAATGATAGATACCATCCAAAGCCAGTGTTGCATA...GCTGGGACCATCTACCTGCCTTATACTACACTTAGGAAAAAGTATTACATATGG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000248594.11
ENST00000435495.6
CDS-3UTR CAA 90 bp GGTATTACTATATTAACATGTCTACAAGCAGCGTGTAACAGGGTTAAGAGACATACTTTTTGGTCCCTCTaGGAGAGGGACCTTCTTAAT +
Preference number: 5 (lower is better)
Translates to: GITILTCLQAACNRVKRHTFWSL*ERDLLN
Trigger: ATTAAGAAGGTCCCTCTCCAAGAGGGACCAAAAAGT...ATGTCTCTTAACCCTGTTACACGCTGCTTGTAGACATGTTAATATAGTAATACC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000248594.11
ENST00000435495.6
CDS-3UTR CAA 90 bp AAAGGTATTACTATATTAACATGTCTACAAGCAGCGTGTAACAGGGTTAAGAGATCCCATCAAAACTTTTaGGTCCCTCTTGGAGAGGGA +
Preference number: 5 (lower is better)
Translates to: KGITILTCLQAACNRVKRSHQNF*VPLGEG
Trigger: TCCCTCTCCAAGAGGGACCAAAAAGTTTTGATGGGA...TCTCTTAACCCTGTTACACGCTGCTTGTAGACATGTTAATATAGTAATACCTTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000248594.11
ENST00000435495.6
CDS-3UTR CAA 90 bp GGTATTACTATATTAACATGTCTACAAGCAGCGTGTAACAGGGTTAAGAGACATAGATCGTTCCTGACTTaGAAGTTCACTCCATTCCGA +
Preference number: 5 (lower is better)
Translates to: GITILTCLQAACNRVKRHRSFLT*KFTPFR
Trigger: TCGGAATGGAGTGAACTTCAAAGTCAGGAACGATCT...ATGTCTCTTAACCCTGTTACACGCTGCTTGTAGACATGTTAATATAGTAATACC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000248594.11
ENST00000435495.6
CDS-3UTR CAA 90 bp CCATATGTAATACTTTTTCCTAAGTGTAGTATAAGGCAGGTAGATGGTCCCAGCGATATTTGTTCTCTCTaGTCACTGAAAGTAGGTGGA +
Preference number: 5 (lower is better)
Translates to: PYVILFPKCSIRQVDGPSDICSL*SLKVGG
Trigger: TCCACCTACTTTCAGTGACAAGAGAGAACAAATATC...GCTGGGACCATCTACCTGCCTTATACTACACTTAGGAAAAAGTATTACATATGG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000248594.11
ENST00000435495.6
CDS-3UTR CAA 90 bp AAAGGTATTACTATATTAACATGTCTACAAGCAGCGTGTAACAGGGTTAAGAGACTAAAGGTCCTTGAGTaGCTACATATGCTTTTGGCC +
Preference number: 5 (lower is better)
Translates to: KGITILTCLQAACNRVKRLKVLE*LHMLLA
Trigger: GGCCAAAAGCATATGTAGCAACTCAAGGACCTTTAG...TCTCTTAACCCTGTTACACGCTGCTTGTAGACATGTTAATATAGTAATACCTTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000248594.11
CDS-3UTR CAA 90 bp TTATTACAATCTTTGATCTCTGATAACCTGCAAAGCTGGCTGCATGAATCCAGCATGAACAAGTTCATATaGCTCCTTTGTTTGTACTGC +
Preference number: 5 (lower is better)
Translates to: LLQSLISDNLQSWLHESSMNKFI*LLCLYC
Trigger: GCAGTACAAACAAAGGAGCAATATGAACTTGTTCAT...GCTGGATTCATGCAGCCAGCTTTGCAGGTTATCAGAGATCAAAGATTGTAATAA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000248594.11
CDS-3UTR CAA 90 bp CCATATGTAATACTTTTTCCTAAGTGTAGTATAAGGCAGGTAGATGGTCCCAGCATGAACAAGTTCATATaGCTCCTTTGTTTGTACTGC +
Preference number: 5 (lower is better)
Translates to: PYVILFPKCSIRQVDGPSMNKFI*LLCLYC
Trigger: GCAGTACAAACAAAGGAGCAATATGAACTTGTTCAT...GCTGGGACCATCTACCTGCCTTATACTACACTTAGGAAAAAGTATTACATATGG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000248594.11
ENST00000435495.6
CDS-3UTR CAA 90 bp AAAGGTATTACTATATTAACATGTCTACAAGCAGCGTGTAACAGGGTTAAGAGAACTTTTTGGTCCCTCTaGGAGAGGGACCTTCTTAAT +
Preference number: 5 (lower is better)
Translates to: KGITILTCLQAACNRVKRTFWSL*ERDLLN
Trigger: ATTAAGAAGGTCCCTCTCCAAGAGGGACCAAAAAGT...TCTCTTAACCCTGTTACACGCTGCTTGTAGACATGTTAATATAGTAATACCTTT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000248594.11
ENST00000435495.6
CDS-3UTR CAA 90 bp GGTATTACTATATTAACATGTCTACAAGCAGCGTGTAACAGGGTTAAGAGACATCAGCACCTGAATGTGTaGTTCCTGCTATATTATGTC +
Preference number: 5 (lower is better)
Translates to: GITILTCLQAACNRVKRHQHLNV*FLLYYV
Trigger: GACATAATATAGCAGGAACAACACATTCAGGTGCTG...ATGTCTCTTAACCCTGTTACACGCTGCTTGTAGACATGTTAATATAGTAATACC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000248594.11
ENST00000435495.6
CDS-3UTR CAA 90 bp CCATATGTAATACTTTTTCCTAAGTGTAGTATAAGGCAGGTAGATGGTCCCAGCGTGTATTATGTTCACTaGCTAACACAAACGATTCAG +
Preference number: 5 (lower is better)
Translates to: PYVILFPKCSIRQVDGPSVYYVH*LTQTIQ
Trigger: CTGAATCGTTTGTGTTAGCAAGTGAACATAATACAC...GCTGGGACCATCTACCTGCCTTATACTACACTTAGGAAAAAGTATTACATATGG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000248594.11
ENST00000435495.6
CDS-3UTR CAA 90 bp AAAGGTATTACTATATTAACATGTCTACAAGCAGCGTGTAACAGGGTTAAGAGAGGATCTCTTGGTCCTTaGGGTTTTCCACATCGATTA +
Preference number: 5 (lower is better)
Translates to: KGITILTCLQAACNRVKRGSLGP*GFPHRL
Trigger: TAATCGATGTGGAAAACCCAAAGGACCAAGAGATCC...TCTCTTAACCCTGTTACACGCTGCTTGTAGACATGTTAATATAGTAATACCTTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000248594.11
ENST00000435495.6
CDS-3UTR CAA 90 bp GGTATTACTATATTAACATGTCTACAAGCAGCGTGTAACAGGGTTAAGAGACATGTAGTCTGTTCTTGCTaGTTCATCCTCACAAGAAAT +
Preference number: 5 (lower is better)
Translates to: GITILTCLQAACNRVKRHVVCSC*FILTRN
Trigger: ATTTCTTGTGAGGATGAACAAGCAAGAACAGACTAC...ATGTCTCTTAACCCTGTTACACGCTGCTTGTAGACATGTTAATATAGTAATACC
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000248594.11
ENST00000435495.6
CDS-3UTR CAA 90 bp AAAGGTATTACTATATTAACATGTCTACAAGCAGCGTGTAACAGGGTTAAGAGAATCAGGTGTTTCAACTaGTGTTGTAGGACTTGGTGT +
Preference number: 5 (lower is better)
Translates to: KGITILTCLQAACNRVKRIRCFN*CCRTWC
Trigger: ACACCAAGTCCTACAACACAAGTTGAAACACCTGAT...TCTCTTAACCCTGTTACACGCTGCTTGTAGACATGTTAATATAGTAATACCTTT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000248594.11
ENST00000435495.6
CDS-3UTR CAA 90 bp GGTATTACTATATTAACATGTCTACAAGCAGCGTGTAACAGGGTTAAGAGACATGATATTTGTTCTCTCTaGTCACTGAAAGTAGGTGGA +
Preference number: 5 (lower is better)
Translates to: GITILTCLQAACNRVKRHDICSL*SLKVGG
Trigger: TCCACCTACTTTCAGTGACAAGAGAGAACAAATATC...ATGTCTCTTAACCCTGTTACACGCTGCTTGTAGACATGTTAATATAGTAATACC
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000248594.11
ENST00000435495.6
CDS-3UTR CAA 90 bp GGTATTACTATATTAACATGTCTACAAGCAGCGTGTAACAGGGTTAAGAGACATTACTGCAGAATGCCTTaGTGTTCTCATTTCTTGTAT +
Preference number: 5 (lower is better)
Translates to: GITILTCLQAACNRVKRHYCRMP*CSHFLY
Trigger: ATACAAGAAATGAGAACACAAAGGCATTCTGCAGTA...ATGTCTCTTAACCCTGTTACACGCTGCTTGTAGACATGTTAATATAGTAATACC
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000248594.11
ENST00000435495.6
CDS-3UTR CAA 90 bp AAAGGTATTACTATATTAACATGTCTACAAGCAGCGTGTAACAGGGTTAAGAGAATATTGCTCCTTTGTTaGTACTGCAGAATGCCTTTG +
Preference number: 5 (lower is better)
Translates to: KGITILTCLQAACNRVKRILLLC*YCRMPL
Trigger: CAAAGGCATTCTGCAGTACAAACAAAGGAGCAATAT...TCTCTTAACCCTGTTACACGCTGCTTGTAGACATGTTAATATAGTAATACCTTT
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000248594.11
ENST00000435495.6
CDS-3UTR CAA 90 bp AAAGGTATTACTATATTAACATGTCTACAAGCAGCGTGTAACAGGGTTAAGAGATATGCAACACTGGCTTaGGATGGTATCTATCATTGT +
Preference number: 5 (lower is better)
Translates to: KGITILTCLQAACNRVKRYATLA*DGIYHC
Trigger: ACAATGATAGATACCATCCAAAGCCAGTGTTGCATA...TCTCTTAACCCTGTTACACGCTGCTTGTAGACATGTTAATATAGTAATACCTTT
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000248594.11
ENST00000435495.6
CDS-3UTR CAA 90 bp AAGCAGCGTGTAACAGGGTTAAGAGACATTAAGGCAATAATACTTGAAGTTTCATCCCTGGAAGTTCTGTaGATTTACTATAGTTTCTGT +
Preference number: 5 (lower is better)
Translates to: KQRVTGLRDIKAIILEVSSLEVL*IYYSFC
Trigger: ACAGAAACTATAGTAAATCAACAGAACTTCCAGGGA...TGAAACTTCAAGTATTATTGCCTTAATGTCTCTTAACCCTGTTACACGCTGCTT
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000248594.11
ENST00000435495.6
CDS-3UTR CAA 90 bp GGTATTACTATATTAACATGTCTACAAGCAGCGTGTAACAGGGTTAAGAGACATTTGATATCTGAGGAATaGCCTTCAGATAAATCAGGT +
Preference number: 5 (lower is better)
Translates to: GITILTCLQAACNRVKRHLISEE*PSDKSG
Trigger: ACCTGATTTATCTGAAGGCAATTCCTCAGATATCAA...ATGTCTCTTAACCCTGTTACACGCTGCTTGTAGACATGTTAATATAGTAATACC
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000248594.11
ENST00000435495.6
CDS-3UTR CAA 90 bp AAAGGTATTACTATATTAACATGTCTACAAGCAGCGTGTAACAGGGTTAAGAGATACTGCAGAATGCCTTaGTGTTCTCATTTCTTGTAT +
Preference number: 5 (lower is better)
Translates to: KGITILTCLQAACNRVKRYCRMP*CSHFLY
Trigger: ATACAAGAAATGAGAACACAAAGGCATTCTGCAGTA...TCTCTTAACCCTGTTACACGCTGCTTGTAGACATGTTAATATAGTAATACCTTT
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000248594.11
ENST00000435495.6
CDS-3UTR CAA 90 bp AAAGGTATTACTATATTAACATGTCTACAAGCAGCGTGTAACAGGGTTAAGAGATTGATATCTGAGGAATaGCCTTCAGATAAATCAGGT +
Preference number: 5 (lower is better)
Translates to: KGITILTCLQAACNRVKRLISEE*PSDKSG
Trigger: ACCTGATTTATCTGAAGGCAATTCCTCAGATATCAA...TCTCTTAACCCTGTTACACGCTGCTTGTAGACATGTTAATATAGTAATACCTTT
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000248594.11
ENST00000435495.6
CDS CAA 90 bp CTCCAGCCTGGGCGACAGAGCTCCATCATGAAGTCCCGGGCGAAGTaGTCCTCCCCATTGTGGTCAGGACTCTTCATGGCCTGGACCCTC +
Preference number: 6 (lower is better)
Translates to: LQPGRQSSIMKSRAK*SSPLWSGLFMAWTL
Trigger: GAGGGTCCAGGCCATGAAGAGTCCTGACCACAATGGGGAGGACAACTTCGCCCGGGACTTCATGATGGAGCTCTGTCGCCCAGGCTGGAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000523952.5
CDS CAA 72 bp GGGCGACAGAGCTCCATCATGAAGTCCCGGGCGAAGTaGTCCTCCCCATTGTGGTCAGGACTCTTCATGGCC +
Preference number: 6 (lower is better)
Translates to: GRQSSIMKSRAK*SSPLWSGLFMA
Trigger: GGCCATGAAGAGTCCTGACCACAATGGGGAGGACAACTTCGCCCGGGACTTCATGATGGAGCTCTGTCGCCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000523952.5
CDS CAA 90 bp CGACAGAGCTCCATCATGAAGTCCCGGGCGAAGTTGTCCTCCCCATaGTGGTCAGGACTCTTCATGGCCTGGACCCTCTGGATGAATTTC +
Preference number: 6 (lower is better)
Translates to: RQSSIMKSRAKLSSP*WSGLFMAWTLWMNF
Trigger: GAAATTCATCCAGAGGGTCCAGGCCATGAAGAGTCCTGACCACAATGGGGAGGACAACTTCGCCCGGGACTTCATGATGGAGCTCTGTCG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000523952.5
CDS GCA 72 bp AATCTTCTTAACCGAGGGTTTCCAACGCCCCAGTCTTaGGCAATATCCGTAGGAGCAGCAGCCGCAACCACC +
Preference number: 6 (lower is better)
Translates to: NLLNRGFPTPQS*AISVGAAAATT
Trigger: GGTGGTTGCGGCTGCTGCTCCTACGGATATTGCGCAAGACTGGGGCGTTGGAAACCCTCGGTTAAGAAGATT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000433369.6
CDS CAA 72 bp GACAATCTTCTTAACCGCATGAAGTCCCGGGCGAAGTaGTCCTCCCCATTGTGGTCAGGACTCTTCATGGCC +
Preference number: 6 (lower is better)
Translates to: DNLLNRMKSRAK*SSPLWSGLFMA
Trigger: GGCCATGAAGAGTCCTGACCACAATGGGGAGGACAACTTCGCCCGGGACTTCATGCGGTTAAGAAGATTGTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000248594.11
ENST00000460731.5
CDS CCA 72 bp TTGTCCTCCCCATTGTGGTCAGGACTCTTCATGGCCTaGACCCTCTGGATGAATTTCCTCAGGATCTCCACT +
Preference number: 6 (lower is better)
Translates to: LSSPLWSGLFMA*TLWMNFLRIST
Trigger: AGTGGAGATCCTGAGGAAATTCATCCAGAGGGTCCAGGCCATGAAGAGTCCTGACCACAATGGGGAGGACAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000248594.11
ENST00000460731.5
ENST00000523952.5
CDS CAA 90 bp AATCTTCTTAACCGCATGAAGTCCCGGGCGAAGTTGTCCTCCCCATaGTGGTCAGGACTCTTCATGGCCTGGACCCTCTGGATGAATTTC +
Preference number: 6 (lower is better)
Translates to: NLLNRMKSRAKLSSP*WSGLFMAWTLWMNF
Trigger: GAAATTCATCCAGAGGGTCCAGGCCATGAAGAGTCCTGACCACAATGGGGAGGACAACTTCGCCCGGGACTTCATGCGGTTAAGAAGATT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000248594.11
ENST00000460731.5
CDS CCA 72 bp AGGTGTCAAGATGGGTGGCACTGGATGAGGTTCCGGTaGCTGCAGTATTTCTTCTTTAGCATCCCCTTCAAC +
Preference number: 6 (lower is better)
Translates to: RCQDGWHWMRFR*LQYFFFSIPFN
Trigger: GTTGAAGGGGATGCTAAAGAAGAAATACTGCAGCCACCGGAACCTCATCCAGTGCCACCCATCTTGACACCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000248594.11
ENST00000415482.6
ENST00000435495.6
CDS CAA 72 bp CCCCTTCAACAAGGCAACTGCGGGTCCTTGGTGGTTTaGGAGGAGGAGAATCTTGTTTTTCAGGCTCTATGG +
Preference number: 6 (lower is better)
Translates to: PLQQGNCGSLVV*EEENLVFQALW
Trigger: CCATAGAGCCTGAAAAACAAGATTCTCCTCCTCCAAAACCACCAAGGACCCGCAGTTGCCTTGTTGAAGGGG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000248594.11
ENST00000415482.6
ENST00000435495.6
CDS CAA 72 bp CATGTCCTTTCTCATCAAGAGGCAAGCGGTCTGGCCTaGGAGGTGTGTCTGAATTCTGGGATTCTTCTGGTG +
Preference number: 6 (lower is better)
Translates to: HVLSHQEASGLA*EVCLNSGILLV
Trigger: CACCAGAAGAATCCCAGAATTCAGACACACCTCCAAGGCCAGACCGCTTGCCTCTTGATGAGAAAGGACATG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000248594.11
ENST00000407343.3
ENST00000415482.6
ENST00000435495.6
CDS CAA 90 bp TCTGATGAAACCATATGCAACACTGGCTTTGGATGGTATCTATCATaGTCCTGCCACACAGTAGTGACTGTTGGAAAAGCTGAAGGGGGA +
Preference number: 6 (lower is better)
Translates to: SDETICNTGFGWYLS*SCHTVVTVGKAEGG
Trigger: TCCCCCTTCAGCTTTTCCAACAGTCACTACTGTGTGGCAGGACAATGATAGATACCATCCAAAGCCAGTGTTGCATATGGTTTCATCAGA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000248594.11
ENST00000415482.6
ENST00000435495.6
CDS CAA 90 bp AGCTCCCTGAATCATGTCCATTCTGAAGGTGGATCTCTTGGTCCTTaGGGTTTTCCACATCGATTACCAAAACCAATATCTGTGGCTTCT +
Preference number: 6 (lower is better)
Translates to: SSLNHVHSEGGSLGP*GFPHRLPKPISVAS
Trigger: AGAAGCCACAGATATTGGTTTTGGTAATCGATGTGGAAAACCCAAAGGACCAAGAGATCCACCTTCAGAATGGACATGATTCAGGGAGCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000248594.11
ENST00000435495.6
ENST00000520947.1
CDS CAA 72 bp ACCATATGCAACACTGGCTTTGGATGGTATCTATCATaGTCCTGCCACACAGTAGTGACTGTTGGAAAAGCT +
Preference number: 6 (lower is better)
Translates to: TICNTGFGWYLS*SCHTVVTVGKA
Trigger: AGCTTTTCCAACAGTCACTACTGTGTGGCAGGACAATGATAGATACCATCCAAAGCCAGTGTTGCATATGGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000248594.11
ENST00000415482.6
ENST00000435495.6
CDS TCA 72 bp AGTACTAGTGGCAGCAGAAACTGTGGCACTTGCTGTTaGAATATTAGTTTTATTCTGGGTCACAGCACCATC +
Preference number: 6 (lower is better)
Translates to: STSGSRNCGTCC*NISFILGHSTI
Trigger: GATGGTGCTGTGACCCAGAATAAAACTAATATTTCAACAGCAAGTGCCACAGTTTCTGCTGCCACTAGTACT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000248594.11
ENST00000407343.3
ENST00000415482.6
ENST00000435495.6
CDS CCA 72 bp TGTTCTGATGAAACCATATGCAACACTGGCTTTGGATaGTATCTATCATTGTCCTGCCACACAGTAGTGACT +
Preference number: 6 (lower is better)
Translates to: CSDETICNTGFG*YLSLSCHTVVT
Trigger: AGTCACTACTGTGTGGCAGGACAATGATAGATACCATCCAAAGCCAGTGTTGCATATGGTTTCATCAGAACA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000248594.11
ENST00000415482.6
ENST00000435495.6
CDS CAA 72 bp CCAGTGGCTGTGGGATATATCTTTTCTGTTCTATATTaGGTAGACAATCTTCTTAACCGCATGAAGTCCCGG +
Preference number: 6 (lower is better)
Translates to: PVAVGYIFSVLY*VDNLLNRMKSR
Trigger: CCGGGACTTCATGCGGTTAAGAAGATTGTCTACCAAATATAGAACAGAAAAGATATATCCCACAGCCACTGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000248594.11
ENST00000460731.5
CDS CAA 72 bp CCAGTGGCTGTGGGATATATCTTTTCTGTTCTATATTaGGTAGACAATCTTCTTAACCGCTCAATACCCCCG +
Preference number: 6 (lower is better)
Translates to: PVAVGYIFSVLY*VDNLLNRSIPP
Trigger: CGGGGGTATTGAGCGGTTAAGAAGATTGTCTACCAAATATAGAACAGAAAAGATATATCCCACAGCCACTGG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000415482.6
ENST00000435495.6
CDS CAA 90 bp TCTTTTTCTCCAGTGGCTGTGGGATATATCTTTTCTGTTCTATATTaGGTAGACAATCTTCTTAACCGCATGAAGTCCCGGGCGAAGTTG +
Preference number: 6 (lower is better)
Translates to: SFSPVAVGYIFSVLY*VDNLLNRMKSRAKL
Trigger: CAACTTCGCCCGGGACTTCATGCGGTTAAGAAGATTGTCTACCAAATATAGAACAGAAAAGATATATCCCACAGCCACTGGAGAAAAAGA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000248594.11
ENST00000460731.5
CDS CAA 90 bp GGTGTGTCTGAATTCTGGGATTCTTCTGGTGGAGTAACTGAAACTTaGTTTGATTGTGTTACACTGCAGTCCACACAAGAATTCTGGGAA +
Preference number: 6 (lower is better)
Translates to: GVSEFWDSSGGVTET*FDCVTLQSTQEFWE
Trigger: TTCCCAGAATTCTTGTGTGGACTGCAGTGTAACACAATCAAACAAAGTTTCAGTTACTCCACCAGAAGAATCCCAGAATTCAGACACACC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000248594.11
ENST00000415482.6
ENST00000435495.6
CDS TCA 72 bp TGGATTAGTAAAACTGAGGGGTGTTCTGAAGAGTGGTaGAGTGTTATCATGATCCACAAGATCAGGTGTTTC +
Preference number: 6 (lower is better)
Translates to: WISKTEGCSEEW*SVIMIHKIRCF
Trigger: GAAACACCTGATCTTGTGGATCATGATAACACTTCACCACTCTTCAGAACACCCCTCAGTTTTACTAATCCA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000248594.11
ENST00000407343.3
ENST00000415482.6
ENST00000435495.6
CDS CAA 72 bp CCAGTGGCTGTGGGATATATCTTTTCTGTTCTATATTaGGTAGACAATCTTCTTAACCGAGGGTTTCCAACG +
Preference number: 6 (lower is better)
Translates to: PVAVGYIFSVLY*VDNLLNRGFPT
Trigger: CGTTGGAAACCCTCGGTTAAGAAGATTGTCTACCAAATATAGAACAGAAAAGATATATCCCACAGCCACTGG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000433369.6
CDS TCA 72 bp GATAAATCAGGTATGGGTATGGCATTTTCAGGTCCATaGAATGACCACGTTACATGTCCTTTCTCATCAAGA +
Preference number: 6 (lower is better)
Translates to: DKSGMGMAFSGP*NDHVTCPFSSR
Trigger: TCTTGATGAGAAAGGACATGTAACGTGGTCATTTCATGGACCTGAAAATGCCATACCCATACCTGATTTATC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000248594.11
ENST00000407343.3
ENST00000415482.6
ENST00000435495.6
CDS TCA 72 bp ATTTTCCAGTATAACTTAAAGTGTCTTCTAGCTCCCTaGATCATGTCCATTCTGAAGGTGGATCTCTTGGTC +
Preference number: 6 (lower is better)
Translates to: IFQYNLKCLLAP*IMSILKVDLLV
Trigger: GACCAAGAGATCCACCTTCAGAATGGACATGATTCAGGGAGCTAGAAGACACTTTAAGTTATACTGGAAAAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000248594.11
ENST00000435495.6
ENST00000520947.1
CDS CAA 72 bp AATCATGTCCATTCTGAAGGTGGATCTCTTGGTCCTTaGGGTTTTCCACATCGATTACCAAAACCAATATCT +
Preference number: 6 (lower is better)
Translates to: NHVHSEGGSLGP*GFPHRLPKPIS
Trigger: AGATATTGGTTTTGGTAATCGATGTGGAAAACCCAAAGGACCAAGAGATCCACCTTCAGAATGGACATGATT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000248594.11
ENST00000435495.6
ENST00000520947.1
CDS CAA 72 bp AAAAATCTATTACTGTATTTGCTAAAGGTCCTTGAGTaGCTACATATGCTTTTGGCCCATAGACGCCATGGC +
Preference number: 6 (lower is better)
Translates to: KNLLLYLLKVLE*LHMLLAHRRHG
Trigger: GCCATGGCGTCTATGGGCCAAAAGCATATGTAGCAACTCAAGGACCTTTAGCAAATACAGTAATAGATTTTT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000440186.5
CDS CCA 72 bp AAATGTTATGCTATTTCTCCTTGGAGTAAATGTTTCTaGATGAGCACTGAAAAGCATGGGCTACTGCATGAA +
Preference number: 6 (lower is better)
Translates to: KCYAISPWSKCF*MSTEKHGLLHE
Trigger: TTCATGCAGTAGCCCATGCTTTTCAGTGCTCATCCAGAAACATTTACTCCAAGGAGAAATAGCATAACATTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000520947.1
CDS TCA 72 bp TGTAGCTGTTTTTCAAACAGTTGGGCAATAGCTCTATaGACAAGTTCATATTGCTCCTTTGTTTGTACTGCA +
Preference number: 6 (lower is better)
Translates to: CSCFSNSWAIAL*TSSYCSFVCTA
Trigger: TGCAGTACAAACAAAGGAGCAATATGAACTTGTTCATAGAGCTATTGCCCAACTGTTTGAAAAACAGCTACA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENST00000248594.11
ENST00000415482.6
ENST00000435495.6
ENST00000464313.1
CDS CCA 72 bp TTTGATTGTGTTACACTGCAGTCCACACAAGAATTCTaGGAAGTATCACCGACATTTAGATCTGAACTTAAT +
Preference number: 6 (lower is better)
Translates to: FDCVTLQSTQEF*EVSPTFRSELN
Trigger: ATTAAGTTCAGATCTAAATGTCGGTGATACTTCCCAGAATTCTTGTGTGGACTGCAGTGTAACACAATCAAA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000248594.11
ENST00000415482.6
ENST00000435495.6
CDS CAA 72 bp AAAAATCTATTACTGTATTTGCTAAAGGTCCTTGAGTaGCTACATATGCTTTTGGCCCATAGACGCCCTTTA +
Preference number: 6 (lower is better)
Translates to: KNLLLYLLKVLE*LHMLLAHRRPL
Trigger: TAAAGGGCGTCTATGGGCCAAAAGCATATGTAGCAACTCAAGGACCTTTAGCAAATACAGTAATAGATTTTT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 6 transcripts:
ENST00000248594.11
ENST00000415482.6
ENST00000418110.5
ENST00000433369.6
ENST00000460731.5
ENST00000522115.6
CDS TCA 72 bp TTTTATTCTTGGCAAGTGTCATTTCACAATGGCAAATaGGCTTTTCTCATTCCTGCCAGTGTTAACTACTTA +
Preference number: 6 (lower is better)
Translates to: FYSWQVSFHNGK*AFLIPASVNYL
Trigger: TAAGTAGTTAACACTGGCAGGAATGAGAAAAGCTCATTTGCCATTGTGAAATGACACTTGCCAAGAATAAAA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000519553.1
CDS CCA 72 bp TGTTGTTCCTGCTATATTATGTCTAGCAATGGACATTaGCAATACTTTCCTAGTAGAAATGCTTTCAGTACT +
Preference number: 6 (lower is better)
Translates to: CCSCYIMSSNGH*QYFPSRNAFST
Trigger: AGTACTGAAAGCATTTCTACTAGGAAAGTATTGCCAATGTCCATTGCTAGACATAATATAGCAGGAACAACA
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000248594.11
ENST00000407343.3
ENST00000415482.6
ENST00000435495.6