Pregenerated sensors for PTPN11 (Homo sapiens)
Ensembl gene IDs: ENSG00000179295Ensembl transcript IDs: ENST00000351677.7, ENST00000392597.5, ENST00000530818.1, ENST00000531326.1
Found 52 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | GGCAGAGAGAGAAGCCCAGCCATCCCAGTCTCTCCGCCGACCTGCTaGCCACATGAGTGGCCACCTGCAGGCTGGCAGAAGAACAGCCCA | + |
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Preference number: 1 (lower is better) Translates to: GRERSPAIPVSPPTC*PHEWPPAGWQKNSP Trigger: TGGGCTGTTCTTCTGCCAGCCTGCAGGTGGCCACTCATGTGGTCAGCAGGTCGGCGGAGAGACTGGGATGGCTGGGCTTCTCTCTCTGCC 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000351677.7 |
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| 3UTR CCA 90 bp | GCCATGGCCAATGGCAGTGCTGTAGGGTCTAGGAGAAATATGCCTTaGGATCAAAATGTCCCTCAATGCAGTTGCTCTATGCCTCAAACA | + |
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Preference number: 1 (lower is better) Translates to: AMANGSAVGSRRNMP*DQNVPQCSCSMPQT Trigger: TGTTTGAGGCATAGAGCAACTGCATTGAGGGACATTTTGATCCCAAGGCATATTTCTCCTAGACCCTACAGCACTGCCATTGGCCATGGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000392597.5 |
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| 3UTR GCA 90 bp | GTAGGGTCTAGGAGAAATATGCCTTGGGATCAAAATGTCCCTCAATaGAGTTGCTCTATGCCTCAAACAGATATTAAATTCTTCCTACAG | + |
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Preference number: 1 (lower is better) Translates to: VGSRRNMPWDQNVPQ*SCSMPQTDIKFFLQ Trigger: CTGTAGGAAGAATTTAATATCTGTTTGAGGCATAGAGCAACTGCATTGAGGGACATTTTGATCCCAAGGCATATTTCTCCTAGACCCTAC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000392597.5 |
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| 3UTR GCA 90 bp | ATTGCAGCACTATTTACAATAGCAAAGACTTGGAACCAACCCAAATaGCCATCAATGATAGACCGGATAAAGAAAATGTGGCACATACAC | + |
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Preference number: 1 (lower is better) Translates to: IAALFTIAKTWNQPK*PSMIDRIKKMWHIH Trigger: GTGTATGTGCCACATTTTCTTTATCCGGTCTATCATTGATGGGCATTTGGGTTGGTTCCAAGTCTTTGCTATTGTAAATAGTGCTGCAAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000530818.1 |
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| 3UTR GCA 90 bp | TCTAGGAGAAATATGCCTTGGGATCAAAATGTCCCTCAATGCAGTTaGTCTATGCCTCAAACAGATATTAAATTCTTCCTACAGTTAAAG | + |
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Preference number: 1 (lower is better) Translates to: SRRNMPWDQNVPQCS*SMPQTDIKFFLQLK Trigger: CTTTAACTGTAGGAAGAATTTAATATCTGTTTGAGGCATAGAGCAACTGCATTGAGGGACATTTTGATCCCAAGGCATATTTCTCCTAGA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000392597.5 |
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| 3UTR-3UTR TCA 90 bp | CTTGGGAGCTCTGAGCTGCATGTGAGAGGTCTAGCTACCCTGCCAGCCAGGCCATCTCCGCCGACCTGCTaGCCACATGAGTGGCCACCT | + |
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Preference number: 2 (lower is better) Translates to: LGSSELHVRGLATLPARPSPPTC*PHEWPP Trigger: AGGTGGCCACTCATGTGGTCAGCAGGTCGGCGGAGA...TGGCCTGGCTGGCAGGGTAGCTAGACCTCTCACATGCAGCTCAGAGCTCCCAAG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000351677.7 |
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| 3UTR-3UTR TCA 90 bp | CTTGGGAGCTCTGAGCTGCATGTGAGAGGTCTAGCTACCCTGCCAGCCAGGCCAGAGCCCAGCTCAGATTaGCTAACAGTTGGGGGCAGG | + |
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Preference number: 2 (lower is better) Translates to: LGSSELHVRGLATLPARPEPSSD*LTVGGR Trigger: CCTGCCCCCAACTGTTAGTCAATCTGAGCTGGGCTC...TGGCCTGGCTGGCAGGGTAGCTAGACCTCTCACATGCAGCTCAGAGCTCCCAAG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000351677.7 |
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| 3UTR-3UTR TCA 90 bp | AGGTCTAGCTACCCTGCCAGCCAGGCCACTGAAAGAGACTACACGAAGAAGGAGGACCTGCTGACCACATaGGTGGCCACCTGCAGGCTG | + |
|
Preference number: 2 (lower is better) Translates to: RSSYPASQATERDYTKKEDLLTT*VATCRL Trigger: CAGCCTGCAGGTGGCCACTCATGTGGTCAGCAGGTC...CTCCTTCTTCGTGTAGTCTCTTTCAGTGGCCTGGCTGGCAGGGTAGCTAGACCT 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000351677.7 |
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| 3UTR-3UTR CCA 90 bp | AGTGCTGTAGGGTCTAGGAGAAATATGCCTTGGGATCAAAATGTCCCTCAATGCGACAGGGACAGGCTGTaGCCTAGAGGGGCAGCAGGA | + |
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Preference number: 2 (lower is better) Translates to: SAVGSRRNMPWDQNVPQCDRDRL*PRGAAG Trigger: TCCTGCTGCCCCTCTAGGCCACAGCCTGTCCCTGTC...GCATTGAGGGACATTTTGATCCCAAGGCATATTTCTCCTAGACCCTACAGCACT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000392597.5 |
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| 3UTR-3UTR GCA 90 bp | GAGCATGTTGCCATGGCCATGGCCAATGGCAGTGCTGTAGGGTCTAGGAGAAATGTCCCTCAATGCAGTTaGTCTATGCCTCAAACAGAT | + |
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Preference number: 2 (lower is better) Translates to: EHVAMAMANGSAVGSRRNVPQCS*SMPQTD Trigger: ATCTGTTTGAGGCATAGAGCAACTGCATTGAGGGAC...ATTTCTCCTAGACCCTACAGCACTGCCATTGGCCATGGCCATGGCAACATGCTC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000392597.5 |
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| 3UTR-3UTR CCA 90 bp | AGGTCTAGCTACCCTGCCAGCCAGGCCACTGAAAGAGACTACACGAAGAAGGAGTTTGTCAGCAACATTTaGCGACCAAAAACACTGGTC | + |
|
Preference number: 2 (lower is better) Translates to: RSSYPASQATERDYTKKEFVSNI*RPKTLV Trigger: GACCAGTGTTTTTGGTCGCCAAATGTTGCTGACAAA...CTCCTTCTTCGTGTAGTCTCTTTCAGTGGCCTGGCTGGCAGGGTAGCTAGACCT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000351677.7 |
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| 3UTR-3UTR CCA 90 bp | AGGTCTAGCTACCCTGCCAGCCAGGCCACTGAAAGAGACTACACGAAGAAGGAGAAGCCACTAAAGTTTTaGGATAAGTTTGTCAGCAAC | + |
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Preference number: 2 (lower is better) Translates to: RSSYPASQATERDYTKKEKPLKF*DKFVSN Trigger: GTTGCTGACAAACTTATCCCAAAACTTTAGTGGCTT...CTCCTTCTTCGTGTAGTCTCTTTCAGTGGCCTGGCTGGCAGGGTAGCTAGACCT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000351677.7 |
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| 3UTR-3UTR CCA 90 bp | TCCCTCAATGCAGTTGCTCTATGCCTCAAACAGATATTAAATTCTTCCTACAGTGGTAAAAGCAAGCCCTaGGCGCTAGGAGACAGGGAC | + |
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Preference number: 2 (lower is better) Translates to: SLNAVALCLKQILNSSYSGKSKP*ALGDRD Trigger: GTCCCTGTCTCCTAGCGCCCAGGGCTTGCTTTTACC...ACTGTAGGAAGAATTTAATATCTGTTTGAGGCATAGAGCAACTGCATTGAGGGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000392597.5 |
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| 3UTR TCA 72 bp | AGAAGCCCAGCCATCCCAGTCTCTCCGCCGACCTGCTaGCCACATGAGTGGCCACCTGCAGGCTGGCAGAAG | + |
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Preference number: 3 (lower is better) Translates to: RSPAIPVSPPTC*PHEWPPAGWQK Trigger: CTTCTGCCAGCCTGCAGGTGGCCACTCATGTGGTCAGCAGGTCGGCGGAGAGACTGGGATGGCTGGGCTTCT 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000351677.7 |
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| 3UTR-3UTR CAA 90 bp | AGGTCTAGCTACCCTGCCAGCCAGGCCACTGAAAGAGACTACACGAAGAAGGAGGTTTGTCAGCAACATTaGGCGACCAAAAACACTGGT | + |
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Preference number: 3 (lower is better) Translates to: RSSYPASQATERDYTKKEVCQQH*ATKNTG Trigger: ACCAGTGTTTTTGGTCGCCAAATGTTGCTGACAAAC...CTCCTTCTTCGTGTAGTCTCTTTCAGTGGCCTGGCTGGCAGGGTAGCTAGACCT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000351677.7 |
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| 3UTR CCA 72 bp | AATGGCAGTGCTGTAGGGTCTAGGAGAAATATGCCTTaGGATCAAAATGTCCCTCAATGCAGTTGCTCTATG | + |
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Preference number: 3 (lower is better) Translates to: NGSAVGSRRNMP*DQNVPQCSCSM Trigger: CATAGAGCAACTGCATTGAGGGACATTTTGATCCCAAGGCATATTTCTCCTAGACCCTACAGCACTGCCATT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000392597.5 |
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| 3UTR GCA 72 bp | AGGAGAAATATGCCTTGGGATCAAAATGTCCCTCAATaGAGTTGCTCTATGCCTCAAACAGATATTAAATTC | + |
|
Preference number: 3 (lower is better) Translates to: RRNMPWDQNVPQ*SCSMPQTDIKF Trigger: GAATTTAATATCTGTTTGAGGCATAGAGCAACTGCATTGAGGGACATTTTGATCCCAAGGCATATTTCTCCT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000392597.5 |
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| 3UTR GCA 72 bp | CTATTTACAATAGCAAAGACTTGGAACCAACCCAAATaGCCATCAATGATAGACCGGATAAAGAAAATGTGG | + |
|
Preference number: 3 (lower is better) Translates to: LFTIAKTWNQPK*PSMIDRIKKMW Trigger: CCACATTTTCTTTATCCGGTCTATCATTGATGGGCATTTGGGTTGGTTCCAAGTCTTTGCTATTGTAAATAG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000530818.1 |
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| CDS-3UTR GCA 90 bp | GCCATGGCCATGGCCAATGGCAGTGCTGTAGGGTCTAGGAGAAATATGCCTTGGGCAGGAGCTGTCACCTaGAGTGCACCACGACCGGCC | + |
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Preference number: 4 (lower is better) Translates to: AMAMANGSAVGSRRNMPWAGAVT*SAPRPA Trigger: GGCCGGTCGTGGTGCACTGCAGGTGACAGCTCCTGC...CCAAGGCATATTTCTCCTAGACCCTACAGCACTGCCATTGGCCATGGCCATGGC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000392597.5 |
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| CDS-3UTR TCA 90 bp | AGGTCTAGCTACCCTGCCAGCCAGGCCACTGAAAGAGACTACACGAAGAAGGAGTCTCCGCCGACCTGCTaGCCACATGAGTGGCCACCT | + |
|
Preference number: 4 (lower is better) Translates to: RSSYPASQATERDYTKKESPPTC*PHEWPP Trigger: AGGTGGCCACTCATGTGGTCAGCAGGTCGGCGGAGA...CTCCTTCTTCGTGTAGTCTCTTTCAGTGGCCTGGCTGGCAGGGTAGCTAGACCT 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000351677.7 |
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| CDS-3UTR TCA 90 bp | CTTGGGAGCTCTGAGCTGCATGTGAGAGGTCTAGCTACCCTGCCAGCCAGGCCAGGCCATTTCTGCTTTTaGGCTCTTGGGAGCTCTGAG | + |
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Preference number: 4 (lower is better) Translates to: LGSSELHVRGLATLPARPGHFCF*ALGSSE Trigger: CTCAGAGCTCCCAAGAGCTCAAAAGCAGAAATGGCC...TGGCCTGGCTGGCAGGGTAGCTAGACCTCTCACATGCAGCTCAGAGCTCCCAAG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000351677.7 |
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| CDS-3UTR GCA 90 bp | AGTGCTGTAGGGTCTAGGAGAAATATGCCTTGGGATCAAAATGTCCCTCAATGCCGGAGACTGTGCAGCTaGCCCCCGGCCCGGCTCGCT | + |
|
Preference number: 4 (lower is better) Translates to: SAVGSRRNMPWDQNVPQCRRLCS*PPARLA Trigger: AGCGAGCCGGGCCGGGGGGCAGCTGCACAGTCTCCG...GCATTGAGGGACATTTTGATCCCAAGGCATATTTCTCCTAGACCCTACAGCACT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000392597.5 |
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| CDS-3UTR TCA 90 bp | CTTGGGAGCTCTGAGCTGCATGTGAGAGGTCTAGCTACCCTGCCAGCCAGGCCACCAGAGAGATGTCCATaGAACCACCTTTCAGAGGTA | + |
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Preference number: 4 (lower is better) Translates to: LGSSELHVRGLATLPARPPERCP*NHLSEV Trigger: TACCTCTGAAAGGTGGTTTCATGGACATCTCTCTGG...TGGCCTGGCTGGCAGGGTAGCTAGACCTCTCACATGCAGCTCAGAGCTCCCAAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000351677.7 |
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| CDS-3UTR GCA 90 bp | CCACATGAGTGGCCACCTGCAGGCTGGCAGAAGAACAGCCCAGCTGAGCCCAGCCTCCAATACCTAATGTaGCAGATAATTCTTTCACCC | + |
|
Preference number: 4 (lower is better) Translates to: PHEWPPAGWQKNSPAEPSLQYLM*QIILSP Trigger: GGGTGAAAGAATTATCTGGCACATTAGGTATTGGAG...GCTGGGCTCAGCTGGGCTGTTCTTCTGCCAGCCTGCAGGTGGCCACTCATGTGG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000351677.7 |
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| CDS-3UTR GCA 90 bp | CCACATGAGTGGCCACCTGCAGGCTGGCAGAAGAACAGCCCAGCTGAGCCCAGCACTTCATGGCAAAGATaGCATAGCATTATTACCATC | + |
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Preference number: 4 (lower is better) Translates to: PHEWPPAGWQKNSPAEPSTSWQR*HSIITI Trigger: GATGGTAATAATGCTATGGCATCTTTGCCATGAAGT...GCTGGGCTCAGCTGGGCTGTTCTTCTGCCAGCCTGCAGGTGGCCACTCATGTGG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000351677.7 |
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| CDS-3UTR CCA 90 bp | CCACATGAGTGGCCACCTGCAGGCTGGCAGAAGAACAGCCCAGCTGAGCCCAGCAAGCCACTAAAGTTTTaGGATAAGTTTGTCAGCAAC | + |
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Preference number: 4 (lower is better) Translates to: PHEWPPAGWQKNSPAEPSKPLKF*DKFVSN Trigger: GTTGCTGACAAACTTATCCCAAAACTTTAGTGGCTT...GCTGGGCTCAGCTGGGCTGTTCTTCTGCCAGCCTGCAGGTGGCCACTCATGTGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000351677.7 |
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| CDS-3UTR TCA 90 bp | GACACTGTGACAATTCTGGACTTAAGTTTTCAGAAGGCCTGGCCATTTCTGCTTGAGCCCAGCTCAGATTaGCTAACAGTTGGGGGCAGG | + |
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Preference number: 4 (lower is better) Translates to: DTVTILDLSFQKAWPFLLEPSSD*LTVGGR Trigger: CCTGCCCCCAACTGTTAGTCAATCTGAGCTGGGCTC...AAGCAGAAATGGCCAGGCCTTCTGAAAACTTAAGTCCAGAATTGTCACAGTGTC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000351677.7 |
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| CDS-3UTR GCA 90 bp | GTCCCTCAATGCAGTTGCTCTATGCCTCAAACAGATATTAAATTCTTCCTACAGAGCTGTCACCTGCAGTaGACCACGACCGGCCCTGCA | + |
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Preference number: 4 (lower is better) Translates to: VPQCSCSMPQTDIKFFLQSCHLQ*TTTGPA Trigger: TGCAGGGCCGGTCGTGGTGCACTGCAGGTGACAGCT...CTGTAGGAAGAATTTAATATCTGTTTGAGGCATAGAGCAACTGCATTGAGGGAC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000392597.5 |
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| CDS-3UTR GCA 90 bp | TTAACTGAGCATGTTGCCATGGCCATGGCCAATGGCAGTGCTGTAGGGTCTAGGCAAAATGTCCCTCAATaGAGTTGCTCTATGCCTCAA | + |
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Preference number: 4 (lower is better) Translates to: LTEHVAMAMANGSAVGSRQNVPQ*SCSMPQ Trigger: TTGAGGCATAGAGCAACTGCATTGAGGGACATTTTG...CCTAGACCCTACAGCACTGCCATTGGCCATGGCCATGGCAACATGCTCAGTTAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000392597.5 |
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| CDS-3UTR CCA 90 bp | TCCCTCAATGCAGTTGCTCTATGCCTCAAACAGATATTAAATTCTTCCTACAGTGACAGGGACAGGCTGTaGCCTAGAGGGGCAGCAGGA | + |
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Preference number: 4 (lower is better) Translates to: SLNAVALCLKQILNSSYSDRDRL*PRGAAG Trigger: TCCTGCTGCCCCTCTAGGCCACAGCCTGTCCCTGTC...ACTGTAGGAAGAATTTAATATCTGTTTGAGGCATAGAGCAACTGCATTGAGGGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000392597.5 |
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| CDS-3UTR CCA 90 bp | GAGCATGTTGCCATGGCCATGGCCAATGGCAGTGCTGTAGGGTCTAGGAGAAATAGGAGAAATATGCCTTaGGATCAAAATGTCCCTCAA | + |
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Preference number: 4 (lower is better) Translates to: EHVAMAMANGSAVGSRRNRRNMP*DQNVPQ Trigger: TTGAGGGACATTTTGATCCCAAGGCATATTTCTCCT...ATTTCTCCTAGACCCTACAGCACTGCCATTGGCCATGGCCATGGCAACATGCTC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000392597.5 |
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| CDS-3UTR TCA 90 bp | GAACCAACCCAAATGCCCATCAATGATAGACCGGATAAAGAAAATGTGGCACATTTGCAGGGTCATGGATaGAGCTGGAAACCATCATTC | + |
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Preference number: 4 (lower is better) Translates to: EPTQMPINDRPDKENVAHLQGHG*SWKPSF Trigger: GAATGATGGTTTCCAGCTTCATCCATGACCCTGCAA...ATGTGCCACATTTTCTTTATCCGGTCTATCATTGATGGGCATTTGGGTTGGTTC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000530818.1 |
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| CDS-3UTR GCA 90 bp | AGTGCTGTAGGGTCTAGGAGAAATATGCCTTGGGATCAAAATGTCCCTCAATGCGGTCTAGGAGAAATATaGCTTGGGATCAAAATGTCC | + |
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Preference number: 4 (lower is better) Translates to: SAVGSRRNMPWDQNVPQCGLGEI*LGIKMS Trigger: GGACATTTTGATCCCAAGGCATATTTCTCCTAGACC...GCATTGAGGGACATTTTGATCCCAAGGCATATTTCTCCTAGACCCTACAGCACT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000392597.5 |
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| CDS-3UTR CCA 90 bp | AATGTCCCTCAATGCAGTTGCTCTATGCCTCAAACAGATATTAAATTCTTCCTACTGAGCATGTTGCCATaGCCATGGCCAATGGCAGTG | + |
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Preference number: 4 (lower is better) Translates to: NVPQCSCSMPQTDIKFFLLSMLP*PWPMAV Trigger: CACTGCCATTGGCCATGGCCATGGCAACATGCTCAG...TAGGAAGAATTTAATATCTGTTTGAGGCATAGAGCAACTGCATTGAGGGACATT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000392597.5 |
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| CDS-3UTR CCA 90 bp | ACTTGGAACCAACCCAAATGCCCATCAATGATAGACCGGATAAAGAAAATGTGGTCCTTTGCAGGGTCATaGATGAAGCTGGAAACCATC | + |
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Preference number: 4 (lower is better) Translates to: TWNQPKCPSMIDRIKKMWSFAGS*MKLETI Trigger: GATGGTTTCCAGCTTCATCCATGACCCTGCAAAGGA...CCACATTTTCTTTATCCGGTCTATCATTGATGGGCATTTGGGTTGGTTCCAAGT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000530818.1 |
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| CDS-3UTR TCA 90 bp | CTTGGGATCAAAATGTCCCTCAATGCAGTTGCTCTATGCCTCAAACAGATATTACCAGAGAGATGTCCATaGAACCACCTTTCAGAGGTA | + |
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Preference number: 4 (lower is better) Translates to: LGIKMSLNAVALCLKQILPERCP*NHLSEV Trigger: TACCTCTGAAAGGTGGTTTCATGGACATCTCTCTGG...TAATATCTGTTTGAGGCATAGAGCAACTGCATTGAGGGACATTTTGATCCCAAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000392597.5 |
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| CDS-3UTR CCA 90 bp | GACACTGTGACAATTCTGGACTTAAGTTTTCAGAAGGCCTGGCCATTTCTGCTTTTTGTCAGCAACATTTaGCGACCAAAAACACTGGTC | + |
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Preference number: 4 (lower is better) Translates to: DTVTILDLSFQKAWPFLLFVSNI*RPKTLV Trigger: GACCAGTGTTTTTGGTCGCCAAATGTTGCTGACAAA...AAGCAGAAATGGCCAGGCCTTCTGAAAACTTAAGTCCAGAATTGTCACAGTGTC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENST00000351677.7 |
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| CDS-3UTR GCA 90 bp | GGGATCAAAATGTCCCTCAATGCAGTTGCTCTATGCCTCAAACAGATATTAAATGTCCCTCAATGCAGTTaGTCTATGCCTCAAACAGAT | + |
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Preference number: 4 (lower is better) Translates to: GIKMSLNAVALCLKQILNVPQCS*SMPQTD Trigger: ATCTGTTTGAGGCATAGAGCAACTGCATTGAGGGAC...ATTTAATATCTGTTTGAGGCATAGAGCAACTGCATTGAGGGACATTTTGATCCC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000392597.5 |
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| CDS GCA 90 bp | GTCGCCCCCGTGATGTCACCGCTCGCGACGCCCGCCGCCACTTCCTaGTTCCCGTCAGCGGAGGACCGAGCGACGGCCGGGAATGGCAGC | + |
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Preference number: 5 (lower is better) Translates to: VAPVMSPLATPAATS*FPSAEDRATAGNGS Trigger: GCTGCCATTCCCGGCCGTCGCTCGGTCCTCCGCTGACGGGAAGCAGGAAGTGGCGGCGGGCGTCGCGAGCGGTGACATCACGGGGGCGAC 73% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000531326.1 |
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| CDS CCA 90 bp | CACTTCCTGCTTCCCGTCAGCGGAGGACCGAGCGACGGCCGGGAATaGCAGCGCGGGGGCTCCGCGGAGGCGCCACGCACAGTGTCCAAA | + |
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Preference number: 5 (lower is better) Translates to: HFLLPVSGGPSDGRE*QRGGSAEAPRTVSK Trigger: TTTGGACACTGTGCGTGGCGCCTCCGCGGAGCCCCCGCGCTGCCATTCCCGGCCGTCGCTCGGTCCTCCGCTGACGGGAAGCAGGAAGTG 71% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000531326.1 |
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| CDS TCA 90 bp | TCCAAAGCATCCTTGCTTCCTCCTGGAAACCGCGGCCGCCAGGTGTaGGCTGCGCGCTCCGCGTCTACGCCACCGACCCGTCCGGGCCCG | + |
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Preference number: 5 (lower is better) Translates to: SKASLLPPGNRGRQV*AARSASTPPTRPGP Trigger: CGGGCCCGGACGGGTCGGTGGCGTAGACGCGGAGCGCGCAGCTCACACCTGGCGGCCGCGGTTTCCAGGAGGAAGCAAGGATGCTTTGGA 70% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000531326.1 |
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| CDS GCA 90 bp | GCGGGGGCTCCGCGGAGGCGCCACGCACAGTGTCCAAAGCATCCTTaGTTCCTCCTGGAAACCGCGGCCGCCAGGTGTGAGCTGCGCGCT | + |
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Preference number: 5 (lower is better) Translates to: AGAPRRRHAQCPKHP*FLLETAAARCELRA Trigger: AGCGCGCAGCTCACACCTGGCGGCCGCGGTTTCCAGGAGGAAGCAAGGATGCTTTGGACACTGTGCGTGGCGCCTCCGCGGAGCCCCCGC 70% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000531326.1 |
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| CDS CCA 90 bp | CGCGGAGGCGCCACGCACAGTGTCCAAAGCATCCTTGCTTCCTCCTaGAAACCGCGGCCGCCAGGTGTGAGCTGCGCGCTCCGCGTCTAC | + |
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Preference number: 5 (lower is better) Translates to: RGGATHSVQSILASS*KPRPPGVSCALRVY Trigger: GTAGACGCGGAGCGCGCAGCTCACACCTGGCGGCCGCGGTTTCCAGGAGGAAGCAAGGATGCTTTGGACACTGTGCGTGGCGCCTCCGCG 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000531326.1 |
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| CDS GCA 90 bp | GAGCTGCGCGCTCCGCGTCTACGCCACCGACCCGTCCGGGCCCGCTaGCACATCGATTTCATTCATTTCGTTCCACAAATCGCCGCTCCA | + |
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Preference number: 5 (lower is better) Translates to: ELRAPRLRHRPVRAR*HIDFIHFVPQIAAP Trigger: TGGAGCGGCGATTTGTGGAACGAAATGAATGAAATCGATGTGGCAGCGGGCCCGGACGGGTCGGTGGCGTAGACGCGGAGCGCGCAGCTC 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000531326.1 |
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| CDS CCA 90 bp | TACTGTCTCCGAGCCTCGGTTTCCTCCATTCTTTTCTTTCGGGCGTaGAGGCTGCGGCGGGAAGATAACTTAAGCCCGAGAAGTCGGGGC | + |
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Preference number: 5 (lower is better) Translates to: YCLRASVSSILFFRA*RLRREDNLSPRSRG Trigger: GCCCCGACTTCTCGGGCTTAAGTTATCTTCCCGCCGCAGCCTCCACGCCCGAAAGAAAAGAATGGAGGAAACCGAGGCTCGGAGACAGTA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000531326.1 |
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| CDS-3UTR CAA 90 bp | CTTGGGAGCTCTGAGCTGCATGTGAGAGGTCTAGCTACCCTGCCAGCCAGGCCATCTGCTTTTGAGCTCTaGGGAGCTCTGAGCTGCATG | + |
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Preference number: 5 (lower is better) Translates to: LGSSELHVRGLATLPARPSAFEL*GALSCM Trigger: CATGCAGCTCAGAGCTCCCAAGAGCTCAAAAGCAGA...TGGCCTGGCTGGCAGGGTAGCTAGACCTCTCACATGCAGCTCAGAGCTCCCAAG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000351677.7 |
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| CDS CCA 90 bp | ATTTCGTTCCACAAATCGCCGCTCCACTCATTAGCTGTGGAACCTTaGGGAAATTACCTACTGTCTCCGAGCCTCGGTTTCCTCCATTCT | + |
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Preference number: 5 (lower is better) Translates to: ISFHKSPLHSLAVEP*GNYLLSPSLGFLHS Trigger: AGAATGGAGGAAACCGAGGCTCGGAGACAGTAGGTAATTTCCCCAAGGTTCCACAGCTAATGAGTGGAGCGGCGATTTGTGGAACGAAAT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000531326.1 |
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| CDS-3UTR CAA 90 bp | TGGGATCAAAATGTCCCTCAATGCAGTTGCTCTATGCCTCAAACAGATATTAAATGTCCCTCAATGCAGTaGCTCTATGCCTCAAACAGA | + |
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Preference number: 5 (lower is better) Translates to: WDQNVPQCSCSMPQTDIKCPSMQ*LYASNR Trigger: TCTGTTTGAGGCATAGAGCAACTGCATTGAGGGACA...TTTAATATCTGTTTGAGGCATAGAGCAACTGCATTGAGGGACATTTTGATCCCA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000392597.5 |
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| CDS GCA 72 bp | GTGATGTCACCGCTCGCGACGCCCGCCGCCACTTCCTaGTTCCCGTCAGCGGAGGACCGAGCGACGGCCGGG | + |
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Preference number: 6 (lower is better) Translates to: VMSPLATPAATS*FPSAEDRATAG Trigger: CCCGGCCGTCGCTCGGTCCTCCGCTGACGGGAAGCAGGAAGTGGCGGCGGGCGTCGCGAGCGGTGACATCAC 74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000531326.1 |
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| CDS GCA 72 bp | CCGCGGAGGCGCCACGCACAGTGTCCAAAGCATCCTTaGTTCCTCCTGGAAACCGCGGCCGCCAGGTGTGAG | + |
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Preference number: 6 (lower is better) Translates to: PRRRHAQCPKHP*FLLETAAARCE Trigger: CTCACACCTGGCGGCCGCGGTTTCCAGGAGGAAGCAAGGATGCTTTGGACACTGTGCGTGGCGCCTCCGCGG 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000531326.1 |
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| CDS CCA 72 bp | GCCACGCACAGTGTCCAAAGCATCCTTGCTTCCTCCTaGAAACCGCGGCCGCCAGGTGTGAGCTGCGCGCTC | + |
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Preference number: 6 (lower is better) Translates to: ATHSVQSILASS*KPRPPGVSCAL Trigger: GAGCGCGCAGCTCACACCTGGCGGCCGCGGTTTCCAGGAGGAAGCAAGGATGCTTTGGACACTGTGCGTGGC 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000531326.1 |
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| CDS CCA 72 bp | CACAAATCGCCGCTCCACTCATTAGCTGTGGAACCTTaGGGAAATTACCTACTGTCTCCGAGCCTCGGTTTC | + |
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Preference number: 6 (lower is better) Translates to: HKSPLHSLAVEP*GNYLLSPSLGF Trigger: GAAACCGAGGCTCGGAGACAGTAGGTAATTTCCCCAAGGTTCCACAGCTAATGAGTGGAGCGGCGATTTGTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000531326.1 |
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