Pregenerated sensors for PTP4A1 (Homo sapiens)
Ensembl gene IDs: ENSG00000112245Ensembl transcript IDs: ENST00000473334.1, ENST00000626021.3, ENST00000648894.1, ENST00000672924.1, ENST00000673199.1
Found 56 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 72 bp | AAGAGGGCACTAGGGGAAACAATGGTTGCAGTGCACTaGAGAATGACCAATGGCACCTACTTCCAGAGTTTT | + |
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Preference number: 3 (lower is better) Translates to: KRALGETMVAVH*RMTNGTYFQSF Trigger: AAAACTCTGGAAGTAGGTGCCATTGGTCATTCTGCAGTGCACTGCAACCATTGTTTCCCCTAGTGCCCTCTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000648894.1 ENST00000673199.1 |
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| 3UTR TCA 72 bp | AGGAGAAAACTGAGGCTCAGAAGTTGCACAAAACCATaGACTAGTGGAACTGAGCTTTACAAACCAAGGCTG | + |
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Preference number: 3 (lower is better) Translates to: RRKLRLRSCTKP*TSGTELYKPRL Trigger: CAGCCTTGGTTTGTAAAGCTCAGTTCCACTAGTTCATGGTTTTGTGCAACTTCTGAGCCTCAGTTTTCTCCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000648894.1 ENST00000673199.1 |
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| CDS-3UTR TCA 90 bp | GCTTTACAAACCAAGGCTGTCCTCTACTATACATTATTTCTCCTCAGTACACAACAGAATCCCAGCACATaGACTGGCACTGCTGCTGGG | + |
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Preference number: 4 (lower is better) Translates to: ALQTKAVLYYTLFLLSTQQNPST*TGTAAG Trigger: CCCAGCAGCAGTGCCAGTTCATGTGCTGGGATTCTG...TTGTGTACTGAGGAGAAATAATGTATAGTAGAGGACAGCCTTGGTTTGTAAAGC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000648894.1 |
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| CDS-3UTR GCA 90 bp | GCTTTACAAACCAAGGCTGTCCTCTACTATACATTATTTCTCCTCAGTACACAAAATCTGCCTGCTGCCTaGCTTCCTTCTCCCATAGCC | + |
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Preference number: 4 (lower is better) Translates to: ALQTKAVLYYTLFLLSTQNLPAA*LPSPIA Trigger: GGCTATGGGAGAAGGAAGGCAGGCAGCAGGCAGATT...TTGTGTACTGAGGAGAAATAATGTATAGTAGAGGACAGCCTTGGTTTGTAAAGC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000648894.1 |
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| CDS-3UTR TCA 90 bp | CTAGTGGAACTGAGCTTTACAAACCAAGGCTGTCCTCTACTATACATTATTTCTCAGTGCACTGCAGAATaGCCAATGGCACCTACTTCC | + |
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Preference number: 4 (lower is better) Translates to: LVELSFTNQGCPLLYIISQCTAE*PMAPTS Trigger: GGAAGTAGGTGCCATTGGTCATTCTGCAGTGCACTG...AGAAATAATGTATAGTAGAGGACAGCCTTGGTTTGTAAAGCTCAGTTCCACTAG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000648894.1 ENST00000673199.1 |
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| CDS-3UTR GCA 90 bp | CTAGTGGAACTGAGCTTTACAAACCAAGGCTGTCCTCTACTATACATTATTTCTGGAAAATCTGCCTGCTaGCTGCCTTCCTTCTCCCAT | + |
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Preference number: 4 (lower is better) Translates to: LVELSFTNQGCPLLYIISGKSAC*LPSFSH Trigger: ATGGGAGAAGGAAGGCAGGCAGCAGGCAGATTTTCC...AGAAATAATGTATAGTAGAGGACAGCCTTGGTTTGTAAAGCTCAGTTCCACTAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000648894.1 |
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| CDS-3UTR GCA 90 bp | CTAGTGGAACTGAGCTTTACAAACCAAGGCTGTCCTCTACTATACATTATTTCTTGTGGAAAATCTGCCTaGTGCCTGCCTTCCTTCTCC | + |
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Preference number: 4 (lower is better) Translates to: LVELSFTNQGCPLLYIISCGKSA*CLPSFS Trigger: GGAGAAGGAAGGCAGGCAGCAGGCAGATTTTCCACA...AGAAATAATGTATAGTAGAGGACAGCCTTGGTTTGTAAAGCTCAGTTCCACTAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000648894.1 |
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| CDS-3UTR CCA 90 bp | CTAGTGGAACTGAGCTTTACAAACCAAGGCTGTCCTCTACTATACATTATTTCTACTGCATGCCTGGGCTaGCTGCTTCTAGGTATAGAG | + |
|
Preference number: 4 (lower is better) Translates to: LVELSFTNQGCPLLYIISTACLG*LLLGIE Trigger: CTCTATACCTAGAAGCAGCCAGCCCAGGCATGCAGT...AGAAATAATGTATAGTAGAGGACAGCCTTGGTTTGTAAAGCTCAGTTCCACTAG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000648894.1 ENST00000673199.1 |
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| CDS-3UTR CCA 90 bp | GCTTTACAAACCAAGGCTGTCCTCTACTATACATTATTTCTCCTCAGTACACAAACTGCATGCCTGGGCTaGCTGCTTCTAGGTATAGAG | + |
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Preference number: 4 (lower is better) Translates to: ALQTKAVLYYTLFLLSTQTACLG*LLLGIE Trigger: CTCTATACCTAGAAGCAGCCAGCCCAGGCATGCAGT...TTGTGTACTGAGGAGAAATAATGTATAGTAGAGGACAGCCTTGGTTTGTAAAGC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000648894.1 ENST00000673199.1 |
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| CDS-3UTR TCA 90 bp | GCTTTACAAACCAAGGCTGTCCTCTACTATACATTATTTCTCCTCAGTACACAATCTGACTCCCTGACCTaGTTGTTAGGCTTGTGGTCA | + |
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Preference number: 4 (lower is better) Translates to: ALQTKAVLYYTLFLLSTQSDSLT*LLGLWS Trigger: TGACCACAAGCCTAACAATCAGGTCAGGGAGTCAGA...TTGTGTACTGAGGAGAAATAATGTATAGTAGAGGACAGCCTTGGTTTGTAAAGC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000648894.1 |
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| CDS-3UTR TCA 90 bp | CTAGTGGAACTGAGCTTTACAAACCAAGGCTGTCCTCTACTATACATTATTTCTTCGGGTACTCATTGGTaGCCAAAATCTGGTGACACC | + |
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Preference number: 4 (lower is better) Translates to: LVELSFTNQGCPLLYIISSGTHW*PKSGDT Trigger: GGTGTCACCAGATTTTGGTCACCAATGAGTACCCGA...AGAAATAATGTATAGTAGAGGACAGCCTTGGTTTGTAAAGCTCAGTTCCACTAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000648894.1 ENST00000673199.1 |
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| CDS-3UTR GCA 90 bp | GCTTTACAAACCAAGGCTGTCCTCTACTATACATTATTTCTCCTCAGTACACAAGGAATAGGAGAGCAATaGCCTAGGGAAAAGAGGGCA | + |
|
Preference number: 4 (lower is better) Translates to: ALQTKAVLYYTLFLLSTQGIGEQ*PREKRA Trigger: TGCCCTCTTTTCCCTAGGGCATTGCTCTCCTATTCC...TTGTGTACTGAGGAGAAATAATGTATAGTAGAGGACAGCCTTGGTTTGTAAAGC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000648894.1 ENST00000673199.1 |
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| CDS-3UTR GCA 90 bp | CTAGTGGAACTGAGCTTTACAAACCAAGGCTGTCCTCTACTATACATTATTTCTGTGATTAAATGTGACTaGATGCCTGGGCTGGCTGCT | + |
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Preference number: 4 (lower is better) Translates to: LVELSFTNQGCPLLYIISVIKCD*MPGLAA Trigger: AGCAGCCAGCCCAGGCATGCAGTCACATTTAATCAC...AGAAATAATGTATAGTAGAGGACAGCCTTGGTTTGTAAAGCTCAGTTCCACTAG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000648894.1 ENST00000673199.1 |
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| CDS-3UTR CCA 90 bp | GCTTTACAAACCAAGGCTGTCCTCTACTATACATTATTTCTCCTCAGTACACAATCCCAGCACATGAACTaGCACTGCTGCTGGGAATTA | + |
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Preference number: 4 (lower is better) Translates to: ALQTKAVLYYTLFLLSTQSQHMN*HCCWEL Trigger: TAATTCCCAGCAGCAGTGCCAGTTCATGTGCTGGGA...TTGTGTACTGAGGAGAAATAATGTATAGTAGAGGACAGCCTTGGTTTGTAAAGC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000648894.1 |
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| CDS-3UTR CCA 90 bp | CTAGTGGAACTGAGCTTTACAAACCAAGGCTGTCCTCTACTATACATTATTTCTAGCCATGCTCTTGGCTaGGGAGAAAGGGTAGATGTA | + |
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Preference number: 4 (lower is better) Translates to: LVELSFTNQGCPLLYIISSHALG*GERVDV Trigger: TACATCTACCCTTTCTCCCCAGCCAAGAGCATGGCT...AGAAATAATGTATAGTAGAGGACAGCCTTGGTTTGTAAAGCTCAGTTCCACTAG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000648894.1 |
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| CDS-3UTR CCA 90 bp | GCTTTACAAACCAAGGCTGTCCTCTACTATACATTATTTCTCCTCAGTACACAACATGAGCAGGTCCTGTaGCTGGTACTGGTAGTATGT | + |
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Preference number: 4 (lower is better) Translates to: ALQTKAVLYYTLFLLSTQHEQVL*LVLVVC Trigger: ACATACTACCAGTACCAGCCACAGGACCTGCTCATG...TTGTGTACTGAGGAGAAATAATGTATAGTAGAGGACAGCCTTGGTTTGTAAAGC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000648894.1 |
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| CDS-3UTR TCA 90 bp | GCTTTACAAACCAAGGCTGTCCTCTACTATACATTATTTCTCCTCAGTACACAAGGGACTACATCATTTTaGAGCACTCTAGAAGGGGGA | + |
|
Preference number: 4 (lower is better) Translates to: ALQTKAVLYYTLFLLSTQGTTSF*STLEGG Trigger: TCCCCCTTCTAGAGTGCTTCAAAATGATGTAGTCCC...TTGTGTACTGAGGAGAAATAATGTATAGTAGAGGACAGCCTTGGTTTGTAAAGC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000648894.1 ENST00000673199.1 |
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| CDS-3UTR TCA 90 bp | GCTTTACAAACCAAGGCTGTCCTCTACTATACATTATTTCTCCTCAGTACACAAGAATTGTTTAGACAGTaGAGTCAGGGGTGGTGTCTC | + |
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Preference number: 4 (lower is better) Translates to: ALQTKAVLYYTLFLLSTQELFRQ*SQGWCL Trigger: GAGACACCACCCCTGACTTCACTGTCTAAACAATTC...TTGTGTACTGAGGAGAAATAATGTATAGTAGAGGACAGCCTTGGTTTGTAAAGC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000673199.1 |
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| CDS-3UTR GCA 90 bp | GCTTTACAAACCAAGGCTGTCCTCTACTATACATTATTTCTCCTCAGTACACAATACAGTTCACTTGTCTaGATAGAGGTCGTGCTGTGC | + |
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Preference number: 4 (lower is better) Translates to: ALQTKAVLYYTLFLLSTQYSSLV*IEVVLC Trigger: GCACAGCACGACCTCTATGCAGACAAGTGAACTGTA...TTGTGTACTGAGGAGAAATAATGTATAGTAGAGGACAGCCTTGGTTTGTAAAGC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000648894.1 ENST00000673199.1 |
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| CDS-3UTR GCA 90 bp | CTAGTGGAACTGAGCTTTACAAACCAAGGCTGTCCTCTACTATACATTATTTCTAGGGGAAACAATGGTTaGAGTGCACTGCAGAATGAC | + |
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Preference number: 4 (lower is better) Translates to: LVELSFTNQGCPLLYIISRGNNG*SALQND Trigger: GTCATTCTGCAGTGCACTGCAACCATTGTTTCCCCT...AGAAATAATGTATAGTAGAGGACAGCCTTGGTTTGTAAAGCTCAGTTCCACTAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000648894.1 ENST00000673199.1 |
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| CDS-3UTR GCA 90 bp | CTAGTGGAACTGAGCTTTACAAACCAAGGCTGTCCTCTACTATACATTATTTCTTTAAATGTGACTGCATaGCTGGGCTGGCTGCTTCTA | + |
|
Preference number: 4 (lower is better) Translates to: LVELSFTNQGCPLLYIISLNVTA*LGWLLL Trigger: TAGAAGCAGCCAGCCCAGGCATGCAGTCACATTTAA...AGAAATAATGTATAGTAGAGGACAGCCTTGGTTTGTAAAGCTCAGTTCCACTAG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000648894.1 ENST00000673199.1 |
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| CDS-3UTR GCA 90 bp | GCTTTACAAACCAAGGCTGTCCTCTACTATACATTATTTCTCCTCAGTACACAATTAAATGTGACTGCATaGCTGGGCTGGCTGCTTCTA | + |
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Preference number: 4 (lower is better) Translates to: ALQTKAVLYYTLFLLSTQLNVTA*LGWLLL Trigger: TAGAAGCAGCCAGCCCAGGCATGCAGTCACATTTAA...TTGTGTACTGAGGAGAAATAATGTATAGTAGAGGACAGCCTTGGTTTGTAAAGC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000648894.1 ENST00000673199.1 |
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| CDS-3UTR GCA 90 bp | CTAGTGGAACTGAGCTTTACAAACCAAGGCTGTCCTCTACTATACATTATTTCTAAACTGTGGAAAATCTaGCTGCTGCCTGCCTTCCTT | + |
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Preference number: 4 (lower is better) Translates to: LVELSFTNQGCPLLYIISKLWKI*LLPAFL Trigger: AAGGAAGGCAGGCAGCAGGCAGATTTTCCACAGTTT...AGAAATAATGTATAGTAGAGGACAGCCTTGGTTTGTAAAGCTCAGTTCCACTAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000648894.1 |
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| CDS-3UTR CCA 90 bp | CTAGTGGAACTGAGCTTTACAAACCAAGGCTGTCCTCTACTATACATTATTTCTCCAGAAGCTAAACTGTaGAAAATCTGCCTGCTGCCT | + |
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Preference number: 4 (lower is better) Translates to: LVELSFTNQGCPLLYIISPEAKL*KICLLP Trigger: AGGCAGCAGGCAGATTTTCCACAGTTTAGCTTCTGG...AGAAATAATGTATAGTAGAGGACAGCCTTGGTTTGTAAAGCTCAGTTCCACTAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000648894.1 |
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| CDS-3UTR TCA 90 bp | CTAGTGGAACTGAGCTTTACAAACCAAGGCTGTCCTCTACTATACATTATTTCTTGCTGCTGGGAATTATaGGTCACCCTTTCATGTTCT | + |
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Preference number: 4 (lower is better) Translates to: LVELSFTNQGCPLLYIISCCWEL*VTLSCS Trigger: AGAACATGAAAGGGTGACTCATAATTCCCAGCAGCA...AGAAATAATGTATAGTAGAGGACAGCCTTGGTTTGTAAAGCTCAGTTCCACTAG 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000648894.1 |
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| CDS-3UTR TCA 90 bp | CTAGTGGAACTGAGCTTTACAAACCAAGGCTGTCCTCTACTATACATTATTTCTTGCAAAGGAGAAAACTaGGGCTCAGAAGTTGCACAA | + |
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Preference number: 4 (lower is better) Translates to: LVELSFTNQGCPLLYIISCKGEN*GSEVAQ Trigger: TTGTGCAACTTCTGAGCCTCAGTTTTCTCCTTTGCA...AGAAATAATGTATAGTAGAGGACAGCCTTGGTTTGTAAAGCTCAGTTCCACTAG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000648894.1 ENST00000673199.1 |
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| CDS-3UTR TCA 90 bp | CTAGTGGAACTGAGCTTTACAAACCAAGGCTGTCCTCTACTATACATTATTTCTTCTAGAAGGGGGATGTaGTTAAATGTGACTGCATGC | + |
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Preference number: 4 (lower is better) Translates to: LVELSFTNQGCPLLYIISSRRGM*LNVTAC Trigger: GCATGCAGTCACATTTAATCACATCCCCCTTCTAGA...AGAAATAATGTATAGTAGAGGACAGCCTTGGTTTGTAAAGCTCAGTTCCACTAG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000648894.1 ENST00000673199.1 |
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| CDS-3UTR TCA 90 bp | CTAGTGGAACTGAGCTTTACAAACCAAGGCTGTCCTCTACTATACATTATTTCTTGTTCTTCCTGGTGTTaGAGCAAGTCTCTGTTTAAG | + |
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Preference number: 4 (lower is better) Translates to: LVELSFTNQGCPLLYIISCSSWC*SKSLFK Trigger: CTTAAACAGAGACTTGCTTCAACACCAGGAAGAACA...AGAAATAATGTATAGTAGAGGACAGCCTTGGTTTGTAAAGCTCAGTTCCACTAG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000648894.1 |
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| CDS-3UTR TCA 90 bp | GCTTTACAAACCAAGGCTGTCCTCTACTATACATTATTTCTCCTCAGTACACAAGTGACCAAAATCTGGTaGCACCATCTTTTATGTTCT | + |
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Preference number: 4 (lower is better) Translates to: ALQTKAVLYYTLFLLSTQVTKIW*HHLLCS Trigger: AGAACATAAAAGATGGTGTCACCAGATTTTGGTCAC...TTGTGTACTGAGGAGAAATAATGTATAGTAGAGGACAGCCTTGGTTTGTAAAGC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000648894.1 ENST00000673199.1 |
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| CDS-3UTR TCA 90 bp | CTAGTGGAACTGAGCTTTACAAACCAAGGCTGTCCTCTACTATACATTATTTCTGTGACCAAAATCTGGTaGCACCATCTTTTATGTTCT | + |
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Preference number: 4 (lower is better) Translates to: LVELSFTNQGCPLLYIISVTKIW*HHLLCS Trigger: AGAACATAAAAGATGGTGTCACCAGATTTTGGTCAC...AGAAATAATGTATAGTAGAGGACAGCCTTGGTTTGTAAAGCTCAGTTCCACTAG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000648894.1 ENST00000673199.1 |
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| CDS-3UTR GCA 90 bp | GCTTTACAAACCAAGGCTGTCCTCTACTATACATTATTTCTCCTCAGTACACAAAGAGCCTCCAAGAGCTaGAGAACTATTAAAAATCCA | + |
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Preference number: 4 (lower is better) Translates to: ALQTKAVLYYTLFLLSTQRASKS*RTIKNP Trigger: TGGATTTTTAATAGTTCTGCAGCTCTTGGAGGCTCT...TTGTGTACTGAGGAGAAATAATGTATAGTAGAGGACAGCCTTGGTTTGTAAAGC 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000648894.1 |
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| CDS-3UTR GCA 90 bp | CTAGTGGAACTGAGCTTTACAAACCAAGGCTGTCCTCTACTATACATTATTTCTCTCAATAAACGCAAATaGTGTTTTATGGGCTGTGTG | + |
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Preference number: 4 (lower is better) Translates to: LVELSFTNQGCPLLYIISLNKRK*CFMGCV Trigger: CACACAGCCCATAAAACAGCATTTGCGTTTATTGAG...AGAAATAATGTATAGTAGAGGACAGCCTTGGTTTGTAAAGCTCAGTTCCACTAG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000648894.1 ENST00000673199.1 |
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| CDS-3UTR TCA 90 bp | CTAGTGGAACTGAGCTTTACAAACCAAGGCTGTCCTCTACTATACATTATTTCTAGTGTTAAACTGGTATaGAGAGGTGGAACTAAATTC | + |
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Preference number: 4 (lower is better) Translates to: LVELSFTNQGCPLLYIISSVKLV*RGGTKF Trigger: GAATTTAGTTCCACCTCTTCATACCAGTTTAACACT...AGAAATAATGTATAGTAGAGGACAGCCTTGGTTTGTAAAGCTCAGTTCCACTAG 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000648894.1 ENST00000673199.1 |
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| CDS-3UTR TCA 90 bp | GCTTTACAAACCAAGGCTGTCCTCTACTATACATTATTTCTCCTCAGTACACAATTTTCAATTCAGGTGTaGGGCACATATATACACACA | + |
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Preference number: 4 (lower is better) Translates to: ALQTKAVLYYTLFLLSTQFSIQV*GTYIHT Trigger: TGTGTGTATATATGTGCCTCACACCTGAATTGAAAA...TTGTGTACTGAGGAGAAATAATGTATAGTAGAGGACAGCCTTGGTTTGTAAAGC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000648894.1 ENST00000673199.1 |
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| CDS-3UTR GCA 90 bp | GCTTTACAAACCAAGGCTGTCCTCTACTATACATTATTTCTCCTCAGTACACAATGCCATATTCTTAAATaGCTGGCAAACAGTAGATAT | + |
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Preference number: 4 (lower is better) Translates to: ALQTKAVLYYTLFLLSTQCHILK*LANSRY Trigger: ATATCTACTGTTTGCCAGGCATTTAAGAATATGGCA...TTGTGTACTGAGGAGAAATAATGTATAGTAGAGGACAGCCTTGGTTTGTAAAGC 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000648894.1 ENST00000673199.1 |
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| CDS-3UTR GCA 90 bp | CTAGTGGAACTGAGCTTTACAAACCAAGGCTGTCCTCTACTATACATTATTTCTTATTTCAGTTCATTCTaGATAAGGATACCAGACAAG | + |
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Preference number: 4 (lower is better) Translates to: LVELSFTNQGCPLLYIISYFSSF*IRIPDK Trigger: CTTGTCTGGTATCCTTATGCAGAATGAACTGAAATA...AGAAATAATGTATAGTAGAGGACAGCCTTGGTTTGTAAAGCTCAGTTCCACTAG 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000648894.1 |
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| CDS CCA 90 bp | GTGGCTGCAGGGCAGGAGGCGGCGGTGGTCGTGGCGGAGCGGCGGTaGCGGCGATGCAGGCGGCGGCGGGGGCACCAGACTCTACCATGC | + |
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Preference number: 5 (lower is better) Translates to: VAAGQEAAVVVAERR*RRCRRRRGHQTLPC Trigger: GCATGGTAGAGTCTGGTGCCCCCGCCGCCGCCTGCATCGCCGCCACCGCCGCTCCGCCACGACCACCGCCGCCTCCTGCCCTGCAGCCAC 77% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000626021.3 |
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| CDS TCA 90 bp | CGCGCCGCGCCTTCAGTCAGGCGCGGGCGCCGAGGCCATTTTGTCTaGGGCTCGGGTCCCGGCCGTCGAGCACAAGAGTGTAGCTGCACC | + |
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Preference number: 5 (lower is better) Translates to: RAAPSVRRGRRGHFV*GSGPGRRAQECSCT Trigger: GGTGCAGCTACACTCTTGTGCTCGACGGCCGGGACCCGAGCCTCAGACAAAATGGCCTCGGCGCCCGCGCCTGACTGAAGGCGCGGCGCG 70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000473334.1 |
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| CDS CCA 90 bp | GGCTCGGGTCCCGGCCGTCGAGCACAAGAGTGTAGCTGCACCCAGTaGCTGTCCCGCGCCCACCCCGGAGCTCCGAGAAGCTCTGGAACC | + |
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Preference number: 5 (lower is better) Translates to: GSGPGRRAQECSCTQ*LSRAHPGAPRSSGT Trigger: GGTTCCAGAGCTTCTCGGAGCTCCGGGGTGGGCGCGGGACAGCCACTGGGTGCAGCTACACTCTTGTGCTCGACGGCCGGGACCCGAGCC 70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000473334.1 |
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| CDS GCA 90 bp | ACCCCGGAGCTCCGAGAAGCTCTGGAACCAGATCGTTACCACCCGTaGCTGGCTGTCCGGCCTACCCCACGCCCGCCCGGATCTGGAGGC | + |
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Preference number: 5 (lower is better) Translates to: TPELREALEPDRYHP*LAVRPTPRPPGSGG Trigger: GCCTCCAGATCCGGGCGGGCGTGGGGTAGGCCGGACAGCCAGGCACGGGTGGTAACGATCTGGTTCCAGAGCTTCTCGGAGCTCCGGGGT 69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000473334.1 |
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| CDS CCA 90 bp | CACCCAGTGGCTGTCCCGCGCCCACCCCGGAGCTCCGAGAAGCTCTaGAACCAGATCGTTACCACCCGTGCCTGGCTGTCCGGCCTACCC | + |
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Preference number: 5 (lower is better) Translates to: HPVAVPRPPRSSEKL*NQIVTTRAWLSGLP Trigger: GGGTAGGCCGGACAGCCAGGCACGGGTGGTAACGATCTGGTTCCAGAGCTTCTCGGAGCTCCGGGGTGGGCGCGGGACAGCCACTGGGTG 69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000473334.1 |
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| CDS CCA 90 bp | CGGAGCTCCGAGAAGCTCTGGAACCAGATCGTTACCACCCGTGCCTaGCTGTCCGGCCTACCCCACGCCCGCCCGGATCTGGAGGCGAAC | + |
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Preference number: 5 (lower is better) Translates to: RSSEKLWNQIVTTRA*LSGLPHARPDLEAN Trigger: GTTCGCCTCCAGATCCGGGCGGGCGTGGGGTAGGCCGGACAGCCAGGCACGGGTGGTAACGATCTGGTTCCAGAGCTTCTCGGAGCTCCG 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000473334.1 |
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| CDS-3UTR CAA 90 bp | CTAGTGGAACTGAGCTTTACAAACCAAGGCTGTCCTCTACTATACATTATTTCTAGGGACTACATCATTTaGAAGCACTCTAGAAGGGGG | + |
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Preference number: 5 (lower is better) Translates to: LVELSFTNQGCPLLYIISRDYII*KHSRRG Trigger: CCCCCTTCTAGAGTGCTTCAAAATGATGTAGTCCCT...AGAAATAATGTATAGTAGAGGACAGCCTTGGTTTGTAAAGCTCAGTTCCACTAG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000648894.1 ENST00000673199.1 |
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| CDS-3UTR CAA 90 bp | CTAGTGGAACTGAGCTTTACAAACCAAGGCTGTCCTCTACTATACATTATTTCTAAGAACACCACAGAATaGCTCCATGTACAGCTAGCT | + |
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Preference number: 5 (lower is better) Translates to: LVELSFTNQGCPLLYIISKNTTE*LHVQLA Trigger: AGCTAGCTGTACATGGAGCAATTCTGTGGTGTTCTT...AGAAATAATGTATAGTAGAGGACAGCCTTGGTTTGTAAAGCTCAGTTCCACTAG 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000648894.1 |
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| CDS-3UTR CAA 90 bp | CTAGTGGAACTGAGCTTTACAAACCAAGGCTGTCCTCTACTATACATTATTTCTGATTCTTTAGCCAAGTaGAGGGACTACATCATTTTG | + |
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Preference number: 5 (lower is better) Translates to: LVELSFTNQGCPLLYIISDSLAK*RDYIIL Trigger: CAAAATGATGTAGTCCCTCAACTTGGCTAAAGAATC...AGAAATAATGTATAGTAGAGGACAGCCTTGGTTTGTAAAGCTCAGTTCCACTAG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000648894.1 ENST00000673199.1 |
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| CDS-3UTR CAA 90 bp | CTAGTGGAACTGAGCTTTACAAACCAAGGCTGTCCTCTACTATACATTATTTCTGAGGAGATTCAAGATTaGAGAGGTATGAATCCAGAA | + |
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Preference number: 5 (lower is better) Translates to: LVELSFTNQGCPLLYIISEEIQD*RGMNPE Trigger: TTCTGGATTCATACCTCTCAAATCTTGAATCTCCTC...AGAAATAATGTATAGTAGAGGACAGCCTTGGTTTGTAAAGCTCAGTTCCACTAG 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000648894.1 |
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| CDS-3UTR CAA 90 bp | CTAGTGGAACTGAGCTTTACAAACCAAGGCTGTCCTCTACTATACATTATTTCTGTGGAACTAAATTCTTaGAAACACAAGGTGGAGTAT | + |
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Preference number: 5 (lower is better) Translates to: LVELSFTNQGCPLLYIISVELNS*KHKVEY Trigger: ATACTCCACCTTGTGTTTCAAAGAATTTAGTTCCAC...AGAAATAATGTATAGTAGAGGACAGCCTTGGTTTGTAAAGCTCAGTTCCACTAG 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000648894.1 ENST00000673199.1 |
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| CDS GCA 72 bp | GGCTCGGGTCCCGGCCGTCGAGCACAAGAGTGTAGCTaGACCCAGTGGCTGTCCCGCGCCCACCCCGGAGCT | + |
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Preference number: 6 (lower is better) Translates to: GSGPGRRAQECS*TQWLSRAHPGA Trigger: AGCTCCGGGGTGGGCGCGGGACAGCCACTGGGTGCAGCTACACTCTTGTGCTCGACGGCCGGGACCCGAGCC 72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000473334.1 |
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| CDS CCA 72 bp | CCCGGCCGTCGAGCACAAGAGTGTAGCTGCACCCAGTaGCTGTCCCGCGCCCACCCCGGAGCTCCGAGAAGC | + |
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Preference number: 6 (lower is better) Translates to: PGRRAQECSCTQ*LSRAHPGAPRS Trigger: GCTTCTCGGAGCTCCGGGGTGGGCGCGGGACAGCCACTGGGTGCAGCTACACTCTTGTGCTCGACGGCCGGG 71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000473334.1 |
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| CDS CAA 72 bp | CCGCGCCTTCAGTCAGGCGCGGGCGCCGAGGCCATTTaGTCTGAGGCTCGGGTCCCGGCCGTCGAGCACAAG | + |
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Preference number: 6 (lower is better) Translates to: PRLQSGAGAEAI*SEARVPAVEHK Trigger: CTTGTGCTCGACGGCCGGGACCCGAGCCTCAGACAAAATGGCCTCGGCGCCCGCGCCTGACTGAAGGCGCGG 71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000473334.1 |
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| CDS CAA 90 bp | GGGTTCGCGCCGCGCCTTCAGTCAGGCGCGGGCGCCGAGGCCATTTaGTCTGAGGCTCGGGTCCCGGCCGTCGAGCACAAGAGTGTAGCT | + |
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Preference number: 6 (lower is better) Translates to: GFAPRLQSGAGAEAI*SEARVPAVEHKSVA Trigger: AGCTACACTCTTGTGCTCGACGGCCGGGACCCGAGCCTCAGACAAAATGGCCTCGGCGCCCGCGCCTGACTGAAGGCGCGGCGCGAACCC 69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000473334.1 |
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| CDS GCA 72 bp | CTCCGAGAAGCTCTGGAACCAGATCGTTACCACCCGTaGCTGGCTGTCCGGCCTACCCCACGCCCGCCCGGA | + |
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Preference number: 6 (lower is better) Translates to: LREALEPDRYHP*LAVRPTPRPPG Trigger: TCCGGGCGGGCGTGGGGTAGGCCGGACAGCCAGGCACGGGTGGTAACGATCTGGTTCCAGAGCTTCTCGGAG 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000473334.1 |
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| CDS CCA 72 bp | GCTGTCCCGCGCCCACCCCGGAGCTCCGAGAAGCTCTaGAACCAGATCGTTACCACCCGTGCCTGGCTGTCC | + |
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Preference number: 6 (lower is better) Translates to: AVPRPPRSSEKL*NQIVTTRAWLS Trigger: GGACAGCCAGGCACGGGTGGTAACGATCTGGTTCCAGAGCTTCTCGGAGCTCCGGGGTGGGCGCGGGACAGC 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000473334.1 |
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| CDS TCA 72 bp | CCTTCAGTCAGGCGCGGGCGCCGAGGCCATTTTGTCTaGGGCTCGGGTCCCGGCCGTCGAGCACAAGAGTGT | + |
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Preference number: 6 (lower is better) Translates to: PSVRRGRRGHFV*GSGPGRRAQEC Trigger: ACACTCTTGTGCTCGACGGCCGGGACCCGAGCCTCAGACAAAATGGCCTCGGCGCCCGCGCCTGACTGAAGG 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000473334.1 |
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| CDS GCA 72 bp | CAAGAACACCACAGAATTGCTCCATGTACAGCTAGCTaGCTTGGTATAGAAAAGGCTTCCAGAAATAGTCCT | + |
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Preference number: 6 (lower is better) Translates to: QEHHRIAPCTAS*LGIEKASRNSP Trigger: AGGACTATTTCTGGAAGCCTTTTCTATACCAAGGCAGCTAGCTGTACATGGAGCAATTCTGTGGTGTTCTTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000648894.1 |
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| CDS TCA 72 bp | AAACTTAAGGCTATAGAAGATGGGGAGAGTATCTTTTaGTGCAGACGAAGCCCTATGCTCCCTATATTCTTT | + |
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Preference number: 6 (lower is better) Translates to: KLKAIEDGESIF*CRRSPMLPIFF Trigger: AAAGAATATAGGGAGCATAGGGCTTCGTCTGCATCAAAAGATACTCTCCCCATCTTCTATAGCCTTAAGTTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000672924.1 |
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