RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for PTMS (Homo sapiens)

Ensembl gene IDs: ENSG00000159335

Ensembl transcript IDs: ENST00000309083.8, ENST00000389462.8, ENST00000538057.2

Found 18 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR-3UTR CCA 90 bp TTAGGTGGGAGAGGCTACCGGAGGAAGAATGAGGCTGGTAGGGGAGGGAGAAAGGAGCCAGGTGAAGAGTaGCTGGACTTGGCTGCCCCC +
Preference number: 2 (lower is better)
Translates to: LGGRGYRRKNEAGRGGRKEPGEE*LDLAAP
Trigger: GGGGGCAGCCAAGTCCAGCCACTCTTCACCTGGCTC...CTTTCTCCCTCCCCTACCAGCCTCATTCTTCCTCCGGTAGCCTCTCCCACCTAA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000309083.8
3UTR-3UTR TCA 90 bp TTAGGTGGGAGAGGCTACCGGAGGAAGAATGAGGCTGGTAGGGGAGGGAGAAAGGGAACAATGGCAGAGTaGGGGTGGAGGGCGCAGTGT +
Preference number: 2 (lower is better)
Translates to: LGGRGYRRKNEAGRGGRKGTMAE*GWRAQC
Trigger: ACACTGCGCCCTCCACCCTCACTCTGCCATTGTTCC...CTTTCTCCCTCCCCTACCAGCCTCATTCTTCCTCCGGTAGCCTCTCCCACCTAA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000309083.8
3UTR-3UTR CAA 90 bp TTAGGTGGGAGAGGCTACCGGAGGAAGAATGAGGCTGGTAGGGGAGGGAGAAAGGAGAGAGAGGAGCAATaGGGGGCCAGCTGGAGAGCT +
Preference number: 3 (lower is better)
Translates to: LGGRGYRRKNEAGRGGRKEREEQ*GASWRA
Trigger: AGCTCTCCAGCTGGCCCCCAATTGCTCCTCTCTCTC...CTTTCTCCCTCCCCTACCAGCCTCATTCTTCCTCCGGTAGCCTCTCCCACCTAA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000309083.8
CDS-3UTR CCA 90 bp TTAGGTGGGAGAGGCTACCGGAGGAAGAATGAGGCTGGTAGGGGAGGGAGAAAGGGCCCCACCCCGGCCTaGCGCTGTCTGAGAAGAGGG +
Preference number: 4 (lower is better)
Translates to: LGGRGYRRKNEAGRGGRKGPTPA*RCLRRG
Trigger: CCCTCTTCTCAGACAGCGCCAGGCCGGGGTGGGGCC...CTTTCTCCCTCCCCTACCAGCCTCATTCTTCCTCCGGTAGCCTCTCCCACCTAA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000309083.8
CDS-3UTR CCA 90 bp TTAGGTGGGAGAGGCTACCGGAGGAAGAATGAGGCTGGTAGGGGAGGGAGAAAGGGCCGCTCGGCAAGCTaGGTCTCTGGAAGAGGCGGC +
Preference number: 4 (lower is better)
Translates to: LGGRGYRRKNEAGRGGRKGRSAS*VSGRGG
Trigger: GCCGCCTCTTCCAGAGACCCAGCTTGCCGAGCGGCC...CTTTCTCCCTCCCCTACCAGCCTCATTCTTCCTCCGGTAGCCTCTCCCACCTAA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000309083.8
CDS-3UTR CCA 90 bp TTAGGTGGGAGAGGCTACCGGAGGAAGAATGAGGCTGGTAGGGGAGGGAGAAAGGGCAAGCTGGGTCTCTaGAAGAGGCGGCAGAGGCGC +
Preference number: 4 (lower is better)
Translates to: LGGRGYRRKNEAGRGGRKGKLGL*KRRQRR
Trigger: GCGCCTCTGCCGCCTCTTCCAGAGACCCAGCTTGCC...CTTTCTCCCTCCCCTACCAGCCTCATTCTTCCTCCGGTAGCCTCTCCCACCTAA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000309083.8
CDS-3UTR GCA 90 bp TTAGGTGGGAGAGGCTACCGGAGGAAGAATGAGGCTGGTAGGGGAGGGAGAAAGGCTCAACTCGGCCGCTaGCTCCACGCTTTTCTCCGA +
Preference number: 4 (lower is better)
Translates to: LGGRGYRRKNEAGRGGRKAQLGR*LHAFLR
Trigger: TCGGAGAAAAGCGTGGAGGCAGCGGCCGAGTTGAGC...CTTTCTCCCTCCCCTACCAGCCTCATTCTTCCTCCGGTAGCCTCTCCCACCTAA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000309083.8
CDS-3UTR CCA 90 bp TTAGGTGGGAGAGGCTACCGGAGGAAGAATGAGGCTGGTAGGGGAGGGAGAAAGTCTCCTTCAGGTCCTTaGCGCTCAACTCGGCCGCTG +
Preference number: 4 (lower is better)
Translates to: LGGRGYRRKNEAGRGGRKSPSGP*RSTRPL
Trigger: CAGCGGCCGAGTTGAGCGCCAAGGACCTGAAGGAGA...CTTTCTCCCTCCCCTACCAGCCTCATTCTTCCTCCGGTAGCCTCTCCCACCTAA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000309083.8
CDS-3UTR GCA 90 bp TTAGGTGGGAGAGGCTACCGGAGGAAGAATGAGGCTGGTAGGGGAGGGAGAAAGTCGCTCTTTCCGGCTTaGCTTCTCCTCCACCTTCTC +
Preference number: 4 (lower is better)
Translates to: LGGRGYRRKNEAGRGGRKSLFPA*LLLHLL
Trigger: GAGAAGGTGGAGGAGAAGGCAAGCCGGAAAGAGCGA...CTTTCTCCCTCCCCTACCAGCCTCATTCTTCCTCCGGTAGCCTCTCCCACCTAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000309083.8
CDS-3UTR GCA 90 bp TTAGGTGGGAGAGGCTACCGGAGGAAGAATGAGGCTGGTAGGGGAGGGAGAAAGAGGGGCTCACGCCGATaGCCCATTTTCTGTCTTCTG +
Preference number: 4 (lower is better)
Translates to: LGGRGYRRKNEAGRGGRKRGSRR*PIFCLL
Trigger: CAGAAGACAGAAAATGGGGCATCGGCGTGAGCCCCT...CTTTCTCCCTCCCCTACCAGCCTCATTCTTCCTCCGGTAGCCTCTCCCACCTAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000309083.8
CDS-3UTR GCA 90 bp TTAGGTGGGAGAGGCTACCGGAGGAAGAATGAGGCTGGTAGGGGAGGGAGAAAGCCATTTTCTGTCTTCTaGCGTTTGGGATCCGCTTCA +
Preference number: 4 (lower is better)
Translates to: LGGRGYRRKNEAGRGGRKPFSVF*RLGSAS
Trigger: TGAAGCGGATCCCAAACGGCAGAAGACAGAAAATGG...CTTTCTCCCTCCCCTACCAGCCTCATTCTTCCTCCGGTAGCCTCTCCCACCTAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000309083.8
CDS GCA 90 bp CCTCCTGTGGGGACCAGGAGAGGGAGTAGCCTCAGGCTGGCTGCATaGCTTGCCCACCATCACCACCAATGGGACTGGAGCCTCCACCAC +
Preference number: 5 (lower is better)
Translates to: PPVGTRRGSSLRLAA*LAHHHHQWDWSLHH
Trigger: GTGGTGGAGGCTCCAGTCCCATTGGTGGTGATGGTGGGCAAGGCATGCAGCCAGCCTGAGGCTACTCCCTCTCCTGGTCCCCACAGGAGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000389462.8
ENST00000538057.2
CDS CCA 90 bp GTTCTCCTCCTCCTGTGGGGACCAGGAGAGGGAGTAGCCTCAGGCTaGCTGCATGCCTTGCCCACCATCACCACCAATGGGACTGGAGCC +
Preference number: 5 (lower is better)
Translates to: VLLLLWGPGEGVASG*LHALPTITTNGTGA
Trigger: GGCTCCAGTCCCATTGGTGGTGATGGTGGGCAAGGCATGCAGCCAGCCTGAGGCTACTCCCTCTCCTGGTCCCCACAGGAGGAGGAGAAC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000389462.8
ENST00000538057.2
CDS-3UTR CAA 90 bp TTAGGTGGGAGAGGCTACCGGAGGAAGAATGAGGCTGGTAGGGGAGGGAGAAAGTTCTCCTTCAGGTCCTaGGCGCTCAACTCGGCCGCT +
Preference number: 5 (lower is better)
Translates to: LGGRGYRRKNEAGRGGRKFSFRS*ALNSAA
Trigger: AGCGGCCGAGTTGAGCGCCAAGGACCTGAAGGAGAA...CTTTCTCCCTCCCCTACCAGCCTCATTCTTCCTCCGGTAGCCTCTCCCACCTAA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000309083.8
CDS-3UTR CAA 90 bp TTAGGTGGGAGAGGCTACCGGAGGAAGAATGAGGCTGGTAGGGGAGGGAGAAAGTCTGTCTTCTGCCGTTaGGGATCCGCTTCATCCTCC +
Preference number: 5 (lower is better)
Translates to: LGGRGYRRKNEAGRGGRKSVFCR*GSASSS
Trigger: GGAGGATGAAGCGGATCCCAAACGGCAGAAGACAGA...CTTTCTCCCTCCCCTACCAGCCTCATTCTTCCTCCGGTAGCCTCTCCCACCTAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000309083.8
CDS CCA 72 bp CTCCTGTGGGGACCAGGAGAGGGAGTAGCCTCAGGCTaGCTGCATGCCTTGCCCACCATCACCACCAATGGG +
Preference number: 6 (lower is better)
Translates to: LLWGPGEGVASG*LHALPTITTNG
Trigger: CCCATTGGTGGTGATGGTGGGCAAGGCATGCAGCCAGCCTGAGGCTACTCCCTCTCCTGGTCCCCACAGGAG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000389462.8
ENST00000538057.2
CDS CAA 90 bp CTGTGGGGACCAGGAGAGGGAGTAGCCTCAGGCTGGCTGCATGCCTaGCCCACCATCACCACCAATGGGACTGGAGCCTCCACCACTTCT +
Preference number: 6 (lower is better)
Translates to: LWGPGEGVASGWLHA*PTITTNGTGASTTS
Trigger: AGAAGTGGTGGAGGCTCCAGTCCCATTGGTGGTGATGGTGGGCAAGGCATGCAGCCAGCCTGAGGCTACTCCCTCTCCTGGTCCCCACAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000389462.8
ENST00000538057.2
CDS CAA 90 bp TCTCCTGGGCATCCCTCCCAGCTTCCCCTTCAGCTTCTAAGGTCTTaGTTTCTCTCCATCTGTGTCTCCCTAATCCTCAGGCCCCTACTT +
Preference number: 6 (lower is better)
Translates to: SPGHPSQLPLQLLRS*FLSICVSLILRPLL
Trigger: AAGTAGGGGCCTGAGGATTAGGGAGACACAGATGGAGAGAAACAAAGACCTTAGAAGCTGAAGGGGAAGCTGGGAGGGATGCCCAGGAGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000538057.2