Pregenerated sensors for PTMS (Homo sapiens)
Ensembl gene IDs: ENSG00000159335Ensembl transcript IDs: ENST00000309083.8, ENST00000389462.8, ENST00000538057.2
Found 18 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
Type | Sensor | Details |
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3UTR-3UTR CCA 90 bp | TTAGGTGGGAGAGGCTACCGGAGGAAGAATGAGGCTGGTAGGGGAGGGAGAAAGGAGCCAGGTGAAGAGTaGCTGGACTTGGCTGCCCCC | + |
Preference number: 2 (lower is better) Translates to: LGGRGYRRKNEAGRGGRKEPGEE*LDLAAP Trigger: GGGGGCAGCCAAGTCCAGCCACTCTTCACCTGGCTC...CTTTCTCCCTCCCCTACCAGCCTCATTCTTCCTCCGGTAGCCTCTCCCACCTAA 60% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000309083.8 |
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3UTR-3UTR TCA 90 bp | TTAGGTGGGAGAGGCTACCGGAGGAAGAATGAGGCTGGTAGGGGAGGGAGAAAGGGAACAATGGCAGAGTaGGGGTGGAGGGCGCAGTGT | + |
Preference number: 2 (lower is better) Translates to: LGGRGYRRKNEAGRGGRKGTMAE*GWRAQC Trigger: ACACTGCGCCCTCCACCCTCACTCTGCCATTGTTCC...CTTTCTCCCTCCCCTACCAGCCTCATTCTTCCTCCGGTAGCCTCTCCCACCTAA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000309083.8 |
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3UTR-3UTR CAA 90 bp | TTAGGTGGGAGAGGCTACCGGAGGAAGAATGAGGCTGGTAGGGGAGGGAGAAAGGAGAGAGAGGAGCAATaGGGGGCCAGCTGGAGAGCT | + |
Preference number: 3 (lower is better) Translates to: LGGRGYRRKNEAGRGGRKEREEQ*GASWRA Trigger: AGCTCTCCAGCTGGCCCCCAATTGCTCCTCTCTCTC...CTTTCTCCCTCCCCTACCAGCCTCATTCTTCCTCCGGTAGCCTCTCCCACCTAA 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000309083.8 |
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CDS-3UTR CCA 90 bp | TTAGGTGGGAGAGGCTACCGGAGGAAGAATGAGGCTGGTAGGGGAGGGAGAAAGGGCCCCACCCCGGCCTaGCGCTGTCTGAGAAGAGGG | + |
Preference number: 4 (lower is better) Translates to: LGGRGYRRKNEAGRGGRKGPTPA*RCLRRG Trigger: CCCTCTTCTCAGACAGCGCCAGGCCGGGGTGGGGCC...CTTTCTCCCTCCCCTACCAGCCTCATTCTTCCTCCGGTAGCCTCTCCCACCTAA 63% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENST00000309083.8 |
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CDS-3UTR CCA 90 bp | TTAGGTGGGAGAGGCTACCGGAGGAAGAATGAGGCTGGTAGGGGAGGGAGAAAGGGCCGCTCGGCAAGCTaGGTCTCTGGAAGAGGCGGC | + |
Preference number: 4 (lower is better) Translates to: LGGRGYRRKNEAGRGGRKGRSAS*VSGRGG Trigger: GCCGCCTCTTCCAGAGACCCAGCTTGCCGAGCGGCC...CTTTCTCCCTCCCCTACCAGCCTCATTCTTCCTCCGGTAGCCTCTCCCACCTAA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000309083.8 |
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CDS-3UTR CCA 90 bp | TTAGGTGGGAGAGGCTACCGGAGGAAGAATGAGGCTGGTAGGGGAGGGAGAAAGGGCAAGCTGGGTCTCTaGAAGAGGCGGCAGAGGCGC | + |
Preference number: 4 (lower is better) Translates to: LGGRGYRRKNEAGRGGRKGKLGL*KRRQRR Trigger: GCGCCTCTGCCGCCTCTTCCAGAGACCCAGCTTGCC...CTTTCTCCCTCCCCTACCAGCCTCATTCTTCCTCCGGTAGCCTCTCCCACCTAA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000309083.8 |
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CDS-3UTR GCA 90 bp | TTAGGTGGGAGAGGCTACCGGAGGAAGAATGAGGCTGGTAGGGGAGGGAGAAAGGCTCAACTCGGCCGCTaGCTCCACGCTTTTCTCCGA | + |
Preference number: 4 (lower is better) Translates to: LGGRGYRRKNEAGRGGRKAQLGR*LHAFLR Trigger: TCGGAGAAAAGCGTGGAGGCAGCGGCCGAGTTGAGC...CTTTCTCCCTCCCCTACCAGCCTCATTCTTCCTCCGGTAGCCTCTCCCACCTAA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000309083.8 |
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CDS-3UTR CCA 90 bp | TTAGGTGGGAGAGGCTACCGGAGGAAGAATGAGGCTGGTAGGGGAGGGAGAAAGTCTCCTTCAGGTCCTTaGCGCTCAACTCGGCCGCTG | + |
Preference number: 4 (lower is better) Translates to: LGGRGYRRKNEAGRGGRKSPSGP*RSTRPL Trigger: CAGCGGCCGAGTTGAGCGCCAAGGACCTGAAGGAGA...CTTTCTCCCTCCCCTACCAGCCTCATTCTTCCTCCGGTAGCCTCTCCCACCTAA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000309083.8 |
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CDS-3UTR GCA 90 bp | TTAGGTGGGAGAGGCTACCGGAGGAAGAATGAGGCTGGTAGGGGAGGGAGAAAGTCGCTCTTTCCGGCTTaGCTTCTCCTCCACCTTCTC | + |
Preference number: 4 (lower is better) Translates to: LGGRGYRRKNEAGRGGRKSLFPA*LLLHLL Trigger: GAGAAGGTGGAGGAGAAGGCAAGCCGGAAAGAGCGA...CTTTCTCCCTCCCCTACCAGCCTCATTCTTCCTCCGGTAGCCTCTCCCACCTAA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000309083.8 |
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CDS-3UTR GCA 90 bp | TTAGGTGGGAGAGGCTACCGGAGGAAGAATGAGGCTGGTAGGGGAGGGAGAAAGAGGGGCTCACGCCGATaGCCCATTTTCTGTCTTCTG | + |
Preference number: 4 (lower is better) Translates to: LGGRGYRRKNEAGRGGRKRGSRR*PIFCLL Trigger: CAGAAGACAGAAAATGGGGCATCGGCGTGAGCCCCT...CTTTCTCCCTCCCCTACCAGCCTCATTCTTCCTCCGGTAGCCTCTCCCACCTAA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENST00000309083.8 |
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CDS-3UTR GCA 90 bp | TTAGGTGGGAGAGGCTACCGGAGGAAGAATGAGGCTGGTAGGGGAGGGAGAAAGCCATTTTCTGTCTTCTaGCGTTTGGGATCCGCTTCA | + |
Preference number: 4 (lower is better) Translates to: LGGRGYRRKNEAGRGGRKPFSVF*RLGSAS Trigger: TGAAGCGGATCCCAAACGGCAGAAGACAGAAAATGG...CTTTCTCCCTCCCCTACCAGCCTCATTCTTCCTCCGGTAGCCTCTCCCACCTAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000309083.8 |
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CDS GCA 90 bp | CCTCCTGTGGGGACCAGGAGAGGGAGTAGCCTCAGGCTGGCTGCATaGCTTGCCCACCATCACCACCAATGGGACTGGAGCCTCCACCAC | + |
Preference number: 5 (lower is better) Translates to: PPVGTRRGSSLRLAA*LAHHHHQWDWSLHH Trigger: GTGGTGGAGGCTCCAGTCCCATTGGTGGTGATGGTGGGCAAGGCATGCAGCCAGCCTGAGGCTACTCCCTCTCCTGGTCCCCACAGGAGG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000389462.8 ENST00000538057.2 |
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CDS CCA 90 bp | GTTCTCCTCCTCCTGTGGGGACCAGGAGAGGGAGTAGCCTCAGGCTaGCTGCATGCCTTGCCCACCATCACCACCAATGGGACTGGAGCC | + |
Preference number: 5 (lower is better) Translates to: VLLLLWGPGEGVASG*LHALPTITTNGTGA Trigger: GGCTCCAGTCCCATTGGTGGTGATGGTGGGCAAGGCATGCAGCCAGCCTGAGGCTACTCCCTCTCCTGGTCCCCACAGGAGGAGGAGAAC 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000389462.8 ENST00000538057.2 |
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CDS-3UTR CAA 90 bp | TTAGGTGGGAGAGGCTACCGGAGGAAGAATGAGGCTGGTAGGGGAGGGAGAAAGTTCTCCTTCAGGTCCTaGGCGCTCAACTCGGCCGCT | + |
Preference number: 5 (lower is better) Translates to: LGGRGYRRKNEAGRGGRKFSFRS*ALNSAA Trigger: AGCGGCCGAGTTGAGCGCCAAGGACCTGAAGGAGAA...CTTTCTCCCTCCCCTACCAGCCTCATTCTTCCTCCGGTAGCCTCTCCCACCTAA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000309083.8 |
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CDS-3UTR CAA 90 bp | TTAGGTGGGAGAGGCTACCGGAGGAAGAATGAGGCTGGTAGGGGAGGGAGAAAGTCTGTCTTCTGCCGTTaGGGATCCGCTTCATCCTCC | + |
Preference number: 5 (lower is better) Translates to: LGGRGYRRKNEAGRGGRKSVFCR*GSASSS Trigger: GGAGGATGAAGCGGATCCCAAACGGCAGAAGACAGA...CTTTCTCCCTCCCCTACCAGCCTCATTCTTCCTCCGGTAGCCTCTCCCACCTAA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000309083.8 |
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CDS CCA 72 bp | CTCCTGTGGGGACCAGGAGAGGGAGTAGCCTCAGGCTaGCTGCATGCCTTGCCCACCATCACCACCAATGGG | + |
Preference number: 6 (lower is better) Translates to: LLWGPGEGVASG*LHALPTITTNG Trigger: CCCATTGGTGGTGATGGTGGGCAAGGCATGCAGCCAGCCTGAGGCTACTCCCTCTCCTGGTCCCCACAGGAG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000389462.8 ENST00000538057.2 |
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CDS CAA 90 bp | CTGTGGGGACCAGGAGAGGGAGTAGCCTCAGGCTGGCTGCATGCCTaGCCCACCATCACCACCAATGGGACTGGAGCCTCCACCACTTCT | + |
Preference number: 6 (lower is better) Translates to: LWGPGEGVASGWLHA*PTITTNGTGASTTS Trigger: AGAAGTGGTGGAGGCTCCAGTCCCATTGGTGGTGATGGTGGGCAAGGCATGCAGCCAGCCTGAGGCTACTCCCTCTCCTGGTCCCCACAG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000389462.8 ENST00000538057.2 |
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CDS CAA 90 bp | TCTCCTGGGCATCCCTCCCAGCTTCCCCTTCAGCTTCTAAGGTCTTaGTTTCTCTCCATCTGTGTCTCCCTAATCCTCAGGCCCCTACTT | + |
Preference number: 6 (lower is better) Translates to: SPGHPSQLPLQLLRS*FLSICVSLILRPLL Trigger: AAGTAGGGGCCTGAGGATTAGGGAGACACAGATGGAGAGAAACAAAGACCTTAGAAGCTGAAGGGGAAGCTGGGAGGGATGCCCAGGAGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000538057.2 |