Pregenerated sensors for PSMD7 (Homo sapiens)
Ensembl gene IDs: ENSG00000103035Ensembl transcript IDs: ENST00000219313.9, ENST00000563150.1, ENST00000566015.1, ENST00000568615.2, ENST00000568717.1
Found 42 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | CACTTCAATTTACAGACAATAAAACAAAGGTCTGGAAAGGGACTGTaGTTTGCTCAGAATGGCAGACTTGTTAGTGGACGGCCAGGACGA | + |
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Preference number: 1 (lower is better) Translates to: HFNLQTIKQRSGKGL*FAQNGRLVSGRPGR Trigger: TCGTCCTGGCCGTCCACTAACAAGTCTGCCATTCTGAGCAAATCACAGTCCCTTTCCAGACCTTTGTTTTATTGTCTGTAAATTGAAGTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000568615.2 |
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| 3UTR-3UTR TCA 90 bp | GTGACCGGAGGCAGAGAGCTCTTGTTGGGTCAGCTTTCTAATAAGCATGTCAAGCTGGATCACAACCCCTaGGGATGCCAGAGCTATGGG | + |
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Preference number: 2 (lower is better) Translates to: VTGGRELLLGQLSNKHVKLDHNP*GCQSYG Trigger: CCCATAGCTCTGGCATCCTCAGGGGTTGTGATCCAG...CTTGACATGCTTATTAGAAAGCTGACCCAACAAGAGCTCTCTGCCTCCGGTCAC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000219313.9 |
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| 3UTR CAA 90 bp | AACAAAGGTCTGGAAAGGGACTGTGATTTGCTCAGAATGGCAGACTaGTTAGTGGACGGCCAGGACGAGACCCCAGGTCTCCATATTCCC | + |
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Preference number: 2 (lower is better) Translates to: NKGLERDCDLLRMAD*LVDGQDETPGLHIP Trigger: GGGAATATGGAGACCTGGGGTCTCGTCCTGGCCGTCCACTAACAAGTCTGCCATTCTGAGCAAATCACAGTCCCTTTCCAGACCTTTGTT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000568615.2 |
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| 3UTR-3UTR CCA 90 bp | GTGACCGGAGGCAGAGAGCTCTTGTTGGGTCAGCTTTCTAATAAGCATGTCAAGAGGATGCCAGAGCTATaGGTCCAGAACATGGTGTGG | + |
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Preference number: 2 (lower is better) Translates to: VTGGRELLLGQLSNKHVKRMPEL*VQNMVW Trigger: CCACACCATGTTCTGGACCCATAGCTCTGGCATCCT...CTTGACATGCTTATTAGAAAGCTGACCCAACAAGAGCTCTCTGCCTCCGGTCAC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000219313.9 |
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| 3UTR-3UTR TCA 90 bp | GTGACCGGAGGCAGAGAGCTCTTGTTGGGTCAGCTTTCTAATAAGCATGTCAAGGAGTTCAGAAGGGTCTaGACTCTACGTGTTACCAGA | + |
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Preference number: 2 (lower is better) Translates to: VTGGRELLLGQLSNKHVKEFRRV*TLRVTR Trigger: TCTGGTAACACGTAGAGTTCAGACCCTTCTGAACTC...CTTGACATGCTTATTAGAAAGCTGACCCAACAAGAGCTCTCTGCCTCCGGTCAC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000219313.9 |
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| 3UTR-3UTR TCA 90 bp | GTGACCGGAGGCAGAGAGCTCTTGTTGGGTCAGCTTTCTAATAAGCATGTCAAGGCTGCAGTTCAGATTTaGGATCAGTCTCCATTCACT | + |
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Preference number: 2 (lower is better) Translates to: VTGGRELLLGQLSNKHVKAAVQI*DQSPFT Trigger: AGTGAATGGAGACTGATCTCAAATCTGAACTGCAGC...CTTGACATGCTTATTAGAAAGCTGACCCAACAAGAGCTCTCTGCCTCCGGTCAC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000219313.9 |
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| 3UTR-3UTR TCA 90 bp | GTGACCGGAGGCAGAGAGCTCTTGTTGGGTCAGCTTTCTAATAAGCATGTCAAGATGGACTTCTTCCACTaGAATGTACGCTTCTGTAGG | + |
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Preference number: 2 (lower is better) Translates to: VTGGRELLLGQLSNKHVKMDFFH*NVRFCR Trigger: CCTACAGAAGCGTACATTTCAGTGGAAGAAGTCCAT...CTTGACATGCTTATTAGAAAGCTGACCCAACAAGAGCTCTCTGCCTCCGGTCAC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000568717.1 |
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| 3UTR-3UTR GCA 90 bp | GTGACCGGAGGCAGAGAGCTCTTGTTGGGTCAGCTTTCTAATAAGCATGTCAAGCACAGCAGCGAAAGCTaGAGTTCAGATTTGAGATCA | + |
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Preference number: 2 (lower is better) Translates to: VTGGRELLLGQLSNKHVKHSSES*SSDLRS Trigger: TGATCTCAAATCTGAACTGCAGCTTTCGCTGCTGTG...CTTGACATGCTTATTAGAAAGCTGACCCAACAAGAGCTCTCTGCCTCCGGTCAC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000219313.9 |
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| 3UTR-3UTR CCA 90 bp | GTGACCGGAGGCAGAGAGCTCTTGTTGGGTCAGCTTTCTAATAAGCATGTCAAGAACAATATATGGAGCTaGATCACAACCCCTGAGGAT | + |
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Preference number: 2 (lower is better) Translates to: VTGGRELLLGQLSNKHVKNNIWS*ITTPED Trigger: ATCCTCAGGGGTTGTGATCCAGCTCCATATATTGTT...CTTGACATGCTTATTAGAAAGCTGACCCAACAAGAGCTCTCTGCCTCCGGTCAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000219313.9 |
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| 3UTR-3UTR TCA 90 bp | ACCTCTCTTCCCGTCAGTCAACATTATAGTTTCCAGACAAGGTATGCTATCCACTCTGGAAAGGGACTGTaGTTTGCTCAGAATGGCAGA | + |
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Preference number: 2 (lower is better) Translates to: TSLPVSQHYSFQTRYAIHSGKGL*FAQNGR Trigger: TCTGCCATTCTGAGCAAATCACAGTCCCTTTCCAGA...GTGGATAGCATACCTTGTCTGGAAACTATAATGTTGACTGACGGGAAGAGAGGT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000568615.2 |
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| 3UTR-3UTR CCA 90 bp | GTGACCGGAGGCAGAGAGCTCTTGTTGGGTCAGCTTTCTAATAAGCATGTCAAGGTCCAGAACATGGTGTaGTATTATCAACAGAGTTCA | + |
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Preference number: 2 (lower is better) Translates to: VTGGRELLLGQLSNKHVKVQNMV*YYQQSS Trigger: TGAACTCTGTTGATAATACCACACCATGTTCTGGAC...CTTGACATGCTTATTAGAAAGCTGACCCAACAAGAGCTCTCTGCCTCCGGTCAC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000219313.9 |
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| 3UTR-3UTR CCA 90 bp | GTGACCGGAGGCAGAGAGCTCTTGTTGGGTCAGCTTTCTAATAAGCATGTCAAGTATGGGTCCAGAACATaGTGTGGTATTATCAACAGA | + |
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Preference number: 2 (lower is better) Translates to: VTGGRELLLGQLSNKHVKYGSRT*CGIINR Trigger: TCTGTTGATAATACCACACCATGTTCTGGACCCATA...CTTGACATGCTTATTAGAAAGCTGACCCAACAAGAGCTCTCTGCCTCCGGTCAC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000219313.9 |
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| 3UTR-3UTR GCA 90 bp | GTGACCGGAGGCAGAGAGCTCTTGTTGGGTCAGCTTTCTAATAAGCATGTCAAGTCTGGTTTCCAACCTTaGCGATTCTTTAAACTTTTC | + |
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Preference number: 2 (lower is better) Translates to: VTGGRELLLGQLSNKHVKSGFQP*RFFKLF Trigger: GAAAAGTTTAAAGAATCGGCAAGGTTGGAAACCAGA...CTTGACATGCTTATTAGAAAGCTGACCCAACAAGAGCTCTCTGCCTCCGGTCAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000568717.1 |
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| 3UTR-3UTR CCA 90 bp | TTTCATACCTCTCTTCCCGTCAGTCAACATTATAGTTTCCAGACAAGGTATGCTAATAAAACAAAGGTCTaGAAAGGGACTGTGATTTGC | + |
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Preference number: 2 (lower is better) Translates to: FHTSLPVSQHYSFQTRYANKTKV*KGTVIC Trigger: GCAAATCACAGTCCCTTTCCAGACCTTTGTTTTATT...AGCATACCTTGTCTGGAAACTATAATGTTGACTGACGGGAAGAGAGGTATGAAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000568615.2 |
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| 3UTR-3UTR CAA 90 bp | GTGACCGGAGGCAGAGAGCTCTTGTTGGGTCAGCTTTCTAATAAGCATGTCAAGTGGTTGATGGGCAGCTaGCCTGTGGCGACTTTTTCC | + |
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Preference number: 3 (lower is better) Translates to: VTGGRELLLGQLSNKHVKWLMGS*PVATFS Trigger: GGAAAAAGTCGCCACAGGCAAGCTGCCCATCAACCA...CTTGACATGCTTATTAGAAAGCTGACCCAACAAGAGCTCTCTGCCTCCGGTCAC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000568717.1 |
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| 3UTR CCA 72 bp | GGAGCTGGATCACAACCCCTGAGGATGCCAGAGCTATaGGTCCAGAACATGGTGTGGTATTATCAACAGAGT | + |
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Preference number: 3 (lower is better) Translates to: GAGSQPLRMPEL*VQNMVWYYQQS Trigger: ACTCTGTTGATAATACCACACCATGTTCTGGACCCATAGCTCTGGCATCCTCAGGGGTTGTGATCCAGCTCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000219313.9 |
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| 3UTR-3UTR CAA 90 bp | GTGACCGGAGGCAGAGAGCTCTTGTTGGGTCAGCTTTCTAATAAGCATGTCAAGGGAGGCAGAGAGCTCTaGTTGGGTCAGCTTTCTAAT | + |
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Preference number: 3 (lower is better) Translates to: VTGGRELLLGQLSNKHVKGGREL*LGQLSN Trigger: ATTAGAAAGCTGACCCAACAAGAGCTCTCTGCCTCC...CTTGACATGCTTATTAGAAAGCTGACCCAACAAGAGCTCTCTGCCTCCGGTCAC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000219313.9 ENST00000568717.1 |
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| 3UTR-3UTR CAA 90 bp | GTGACCGGAGGCAGAGAGCTCTTGTTGGGTCAGCTTTCTAATAAGCATGTCAAGGGCAGAGAGCTCTTGTaGGGTCAGCTTTCTAATAAG | + |
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Preference number: 3 (lower is better) Translates to: VTGGRELLLGQLSNKHVKGRELL*GQLSNK Trigger: CTTATTAGAAAGCTGACCCAACAAGAGCTCTCTGCC...CTTGACATGCTTATTAGAAAGCTGACCCAACAAGAGCTCTCTGCCTCCGGTCAC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000219313.9 ENST00000568717.1 |
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| 3UTR-3UTR CAA 90 bp | GTGACCGGAGGCAGAGAGCTCTTGTTGGGTCAGCTTTCTAATAAGCATGTCAAGAGCTGCAGTTCAGATTaGAGATCAGTCTCCATTCAC | + |
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Preference number: 3 (lower is better) Translates to: VTGGRELLLGQLSNKHVKSCSSD*RSVSIH Trigger: GTGAATGGAGACTGATCTCAAATCTGAACTGCAGCT...CTTGACATGCTTATTAGAAAGCTGACCCAACAAGAGCTCTCTGCCTCCGGTCAC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000219313.9 |
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| CDS-3UTR CCA 90 bp | GTGACCGGAGGCAGAGAGCTCTTGTTGGGTCAGCTTTCTAATAAGCATGTCAAGCGAGCATGGGCAGCGTaGGCAACATGGCGAAACCCG | + |
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Preference number: 4 (lower is better) Translates to: VTGGRELLLGQLSNKHVKRAWAA*ATWRNP Trigger: CGGGTTTCGCCATGTTGCCCACGCTGCCCATGCTCG...CTTGACATGCTTATTAGAAAGCTGACCCAACAAGAGCTCTCTGCCTCCGGTCAC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000568717.1 |
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| 3UTR CAA 72 bp | CTGGAAAGGGACTGTGATTTGCTCAGAATGGCAGACTaGTTAGTGGACGGCCAGGACGAGACCCCAGGTCTC | + |
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Preference number: 4 (lower is better) Translates to: LERDCDLLRMAD*LVDGQDETPGL Trigger: GAGACCTGGGGTCTCGTCCTGGCCGTCCACTAACAAGTCTGCCATTCTGAGCAAATCACAGTCCCTTTCCAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000568615.2 |
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| CDS-3UTR TCA 90 bp | GTGGACGGCCAGGACGAGACCCCAGGTCTCCATATTCCCGACACAGACCTCTTCATGGACTTCTTCCACTaGAATGTACGCTTCTGTAGG | + |
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Preference number: 4 (lower is better) Translates to: VDGQDETPGLHIPDTDLFMDFFH*NVRFCR Trigger: CCTACAGAAGCGTACATTTCAGTGGAAGAAGTCCAT...GAAGAGGTCTGTGTCGGGAATATGGAGACCTGGGGTCTCGTCCTGGCCGTCCAC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000568615.2 |
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| CDS-3UTR TCA 90 bp | AGACTTGTTAGTGGACGGCCAGGACGAGACCCCAGGTCTCCATATTCCCGACACTCTGGAAAGGGACTGTaGTTTGCTCAGAATGGCAGA | + |
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Preference number: 4 (lower is better) Translates to: RLVSGRPGRDPRSPYSRHSGKGL*FAQNGR Trigger: TCTGCCATTCTGAGCAAATCACAGTCCCTTTCCAGA...GTGTCGGGAATATGGAGACCTGGGGTCTCGTCCTGGCCGTCCACTAACAAGTCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000568615.2 |
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| CDS-3UTR GCA 90 bp | GTGGACGGCCAGGACGAGACCCCAGGTCTCCATATTCCCGACACAGACCTCTTCAAAGGGACTGTGATTTaGTCAGAATGGCAGACTTGT | + |
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Preference number: 4 (lower is better) Translates to: VDGQDETPGLHIPDTDLFKGTVI*SEWQTC Trigger: ACAAGTCTGCCATTCTGAGCAAATCACAGTCCCTTT...GAAGAGGTCTGTGTCGGGAATATGGAGACCTGGGGTCTCGTCCTGGCCGTCCAC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000568615.2 |
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| CDS-3UTR TCA 90 bp | GTGACCGGAGGCAGAGAGCTCTTGTTGGGTCAGCTTTCTAATAAGCATGTCAAGTTGAGCTCAGGAGTTTaGGACGAGCATGGGCAGCGT | + |
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Preference number: 4 (lower is better) Translates to: VTGGRELLLGQLSNKHVKLSSGV*DEHGQR Trigger: ACGCTGCCCATGCTCGTCTCAAACTCCTGAGCTCAA...CTTGACATGCTTATTAGAAAGCTGACCCAACAAGAGCTCTCTGCCTCCGGTCAC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000568717.1 |
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| CDS-3UTR TCA 90 bp | GTGACCGGAGGCAGAGAGCTCTTGTTGGGTCAGCTTTCTAATAAGCATGTCAAGGGTGGGCAGATCACTTaGGCTCAGGAGTTTGAGACG | + |
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Preference number: 4 (lower is better) Translates to: VTGGRELLLGQLSNKHVKGGQIT*AQEFET Trigger: CGTCTCAAACTCCTGAGCTCAAGTGATCTGCCCACC...CTTGACATGCTTATTAGAAAGCTGACCCAACAAGAGCTCTCTGCCTCCGGTCAC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000568717.1 |
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| CDS-3UTR CCA 90 bp | GTGACCGGAGGCAGAGAGCTCTTGTTGGGTCAGCTTTCTAATAAGCATGTCAAGGCAGCGTGGGCAACATaGCGAAACCCGGTTGAAATG | + |
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Preference number: 4 (lower is better) Translates to: VTGGRELLLGQLSNKHVKAAWAT*RNPVEM Trigger: CATTTCAACCGGGTTTCGCCATGTTGCCCACGCTGC...CTTGACATGCTTATTAGAAAGCTGACCCAACAAGAGCTCTCTGCCTCCGGTCAC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000568717.1 |
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| CDS-3UTR CCA 90 bp | GTGACCGGAGGCAGAGAGCTCTTGTTGGGTCAGCTTTCTAATAAGCATGTCAAGAGTTTGAGACGAGCATaGGCAGCGTGGGCAACATGG | + |
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Preference number: 4 (lower is better) Translates to: VTGGRELLLGQLSNKHVKSLRRA*AAWATW Trigger: CCATGTTGCCCACGCTGCCCATGCTCGTCTCAAACT...CTTGACATGCTTATTAGAAAGCTGACCCAACAAGAGCTCTCTGCCTCCGGTCAC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000568717.1 |
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| 3UTR CAA 72 bp | TCCCCAACTCACAGCAGCGAAAGCTGCAGTTCAGATTaGAGATCAGTCTCCATTCACTTCCACGTAGCACCA | + |
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Preference number: 4 (lower is better) Translates to: SPTHSSESCSSD*RSVSIHFHVAP Trigger: TGGTGCTACGTGGAAGTGAATGGAGACTGATCTCAAATCTGAACTGCAGCTTTCGCTGCTGTGAGTTGGGGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000219313.9 |
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| CDS-3UTR CCA 90 bp | ACACAGACCTCTTCCTTACACTGTGTGACCTCTCGGGCAGTGAATGATTTTGATAATAAAACAAAGGTCTaGAAAGGGACTGTGATTTGC | + |
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Preference number: 4 (lower is better) Translates to: TQTSSLHCVTSRAVNDFDNKTKV*KGTVIC Trigger: GCAAATCACAGTCCCTTTCCAGACCTTTGTTTTATT...ATCAAAATCATTCACTGCCCGAGAGGTCACACAGTGTAAGGAAGAGGTCTGTGT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000568615.2 |
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| CDS-3UTR CAA 90 bp | GTGACCGGAGGCAGAGAGCTCTTGTTGGGTCAGCTTTCTAATAAGCATGTCAAGCTTGAGCTCAGGAGTTaGAGACGAGCATGGGCAGCG | + |
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Preference number: 5 (lower is better) Translates to: VTGGRELLLGQLSNKHVKLELRS*RRAWAA Trigger: CGCTGCCCATGCTCGTCTCAAACTCCTGAGCTCAAG...CTTGACATGCTTATTAGAAAGCTGACCCAACAAGAGCTCTCTGCCTCCGGTCAC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000568717.1 |
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| CDS TCA 90 bp | ACTGTGGTGCTGCTCAGTGATGCAGTCTGCTGGGGCACTGTGCGTTaGGAAAAATCTGGAAATTCCCTCAAGCCCACACTTGGCATGAAC | + |
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Preference number: 5 (lower is better) Translates to: TVVLLSDAVCWGTVR*EKSGNSLKPTLGMN Trigger: GTTCATGCCAAGTGTGGGCTTGAGGGAATTTCCAGATTTTTCTCAACGCACAGTGCCCCAGCAGACTGCATCACTGAGCAGCACCACAGT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000563150.1 |
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| CDS GCA 90 bp | ACATCACTGTGGTGCTGCTCAGTGATGCAGTCTGCTGGGGCACTGTaGGTTGAGAAAAATCTGGAAATTCCCTCAAGCCCACACTTGGCA | + |
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Preference number: 5 (lower is better) Translates to: TSLWCCSVMQSAGAL*VEKNLEIPSSPHLA Trigger: TGCCAAGTGTGGGCTTGAGGGAATTTCCAGATTTTTCTCAACGCACAGTGCCCCAGCAGACTGCATCACTGAGCAGCACCACAGTGATGT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000563150.1 |
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| CDS-3UTR CAA 90 bp | ACACAGACCTCTTCCTTACACTGTGTGACCTCTCGGGCAGTGAATGATTTTGATCTCAGAATGGCAGACTaGTTAGTGGACGGCCAGGAC | + |
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Preference number: 5 (lower is better) Translates to: TQTSSLHCVTSRAVNDFDLRMAD*LVDGQD Trigger: GTCCTGGCCGTCCACTAACAAGTCTGCCATTCTGAG...ATCAAAATCATTCACTGCCCGAGAGGTCACACAGTGTAAGGAAGAGGTCTGTGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000568615.2 |
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| CDS GCA 90 bp | GTTGTCTATAGCAGCTCTTGCACTATAATGGCAGAGAGGAGCAGGTaGAGTGGAGACCACATGGCCTGCAAGTTTAAAATATTTACTGTC | + |
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Preference number: 5 (lower is better) Translates to: VVYSSSCTIMAERSR*SGDHMACKFKIFTV Trigger: GACAGTAAATATTTTAAACTTGCAGGCCATGTGGTCTCCACTGCACCTGCTCCTCTCTGCCATTATAGTGCAAGAGCTGCTATAGACAAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000566015.1 |
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| CDS CCA 90 bp | TGCAGTGGAGACCACATGGCCTGCAAGTTTAAAATATTTACTGTCTaGTCTAGTGTGCAATCTTCAGGTTCTCTTTTCTATACTTCAGCA | + |
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Preference number: 5 (lower is better) Translates to: CSGDHMACKFKIFTV*SSVQSSGSLFYTSA Trigger: TGCTGAAGTATAGAAAAGAGAACCTGAAGATTGCACACTAGACCAGACAGTAAATATTTTAAACTTGCAGGCCATGTGGTCTCCACTGCA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000566015.1 |
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| CDS CCA 72 bp | GGCAGATCACTTGAGCTCAGGAGTTTGAGACGAGCATaGGCAGCGTGGGCAACATGGCGAAACCCGGTTGAA | + |
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Preference number: 6 (lower is better) Translates to: GRSLELRSLRRA*AAWATWRNPVE Trigger: TTCAACCGGGTTTCGCCATGTTGCCCACGCTGCCCATGCTCGTCTCAAACTCCTGAGCTCAAGTGATCTGCC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000568717.1 |
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| CDS CCA 72 bp | CTTGAGCTCAGGAGTTTGAGACGAGCATGGGCAGCGTaGGCAACATGGCGAAACCCGGTTGAAATGATCCAC | + |
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Preference number: 6 (lower is better) Translates to: LELRSLRRAWAA*ATWRNPVEMIH Trigger: GTGGATCATTTCAACCGGGTTTCGCCATGTTGCCCACGCTGCCCATGCTCGTCTCAAACTCCTGAGCTCAAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000568717.1 |
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| CDS TCA 72 bp | CTGCTCAGTGATGCAGTCTGCTGGGGCACTGTGCGTTaGGAAAAATCTGGAAATTCCCTCAAGCCCACACTT | + |
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Preference number: 6 (lower is better) Translates to: LLSDAVCWGTVR*EKSGNSLKPTL Trigger: AAGTGTGGGCTTGAGGGAATTTCCAGATTTTTCTCAACGCACAGTGCCCCAGCAGACTGCATCACTGAGCAG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000563150.1 |
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| CDS GCA 72 bp | AGCAGCTCTTGCACTATAATGGCAGAGAGGAGCAGGTaGAGTGGAGACCACATGGCCTGCAAGTTTAAAATA | + |
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Preference number: 6 (lower is better) Translates to: SSSCTIMAERSR*SGDHMACKFKI Trigger: TATTTTAAACTTGCAGGCCATGTGGTCTCCACTGCACCTGCTCCTCTCTGCCATTATAGTGCAAGAGCTGCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000566015.1 |
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| CDS CCA 72 bp | TTGAGAAAAATCTGGAAATTCCCTCAAGCCCACACTTaGCATGAACGCACAGGGAGGTCTCAGGTTGATTCT | + |
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Preference number: 6 (lower is better) Translates to: LRKIWKFPQAHT*HERTGRSQVDS Trigger: AGAATCAACCTGAGACCTCCCTGTGCGTTCATGCCAAGTGTGGGCTTGAGGGAATTTCCAGATTTTTCTCAA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000563150.1 |
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| CDS CCA 72 bp | GACCACATGGCCTGCAAGTTTAAAATATTTACTGTCTaGTCTAGTGTGCAATCTTCAGGTTCTCTTTTCTAT | + |
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Preference number: 6 (lower is better) Translates to: DHMACKFKIFTV*SSVQSSGSLFY Trigger: ATAGAAAAGAGAACCTGAAGATTGCACACTAGACCAGACAGTAAATATTTTAAACTTGCAGGCCATGTGGTC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000566015.1 |
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