Pregenerated sensors for PSMD4 (Homo sapiens)
Ensembl gene IDs: ENSG00000159352Ensembl transcript IDs: ENST00000461434.1, ENST00000462970.5, ENST00000469786.2, ENST00000470396.1, ENST00000476855.5, ENST00000491857.1
Found 11 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | CTCTGCCAGGTTCTCCTGAGGGCTGGAAGACCTCAGTCCCAAACATaGGCTCCCCACATTCCCCAGCTGCCACTTGGACTCACATCCTTC | + |
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Preference number: 5 (lower is better) Translates to: LCQVLLRAGRPQSQT*APHIPQLPLGLTSF Trigger: GAAGGATGTGAGTCCAAGTGGCAGCTGGGGAATGTGGGGAGCCCATGTTTGGGACTGAGGTCTTCCAGCCCTCAGGAGAACCTGGCAGAG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000462970.5 |
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| CDS CCA 90 bp | CCCAAAGTGATGAGCCTGATGCCTCTGCCAGGTTCTCCTGAGGGCTaGAAGACCTCAGTCCCAAACATGGGCTCCCCACATTCCCCAGCT | + |
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Preference number: 5 (lower is better) Translates to: PKVMSLMPLPGSPEG*KTSVPNMGSPHSPA Trigger: AGCTGGGGAATGTGGGGAGCCCATGTTTGGGACTGAGGTCTTCCAGCCCTCAGGAGAACCTGGCAGAGGCATCAGGCTCATCACTTTGGG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000462970.5 |
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| CDS GCA 90 bp | AGCCCTCCCACATATTCCTACCCTGTCAGACCTCCACACTCTCCCTaGAGTGCCTACACCCAGCTTTCAATGTTTAGCATCCCGCAGTCC | + |
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Preference number: 5 (lower is better) Translates to: SPPTYSYPVRPPHSP*SAYTQLSMFSIPQS Trigger: GGACTGCGGGATGCTAAACATTGAAAGCTGGGTGTAGGCACTGCAGGGAGAGTGTGGAGGTCTGACAGGGTAGGAATATGTGGGAGGGCT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000476855.5 |
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| CDS GCA 90 bp | CATGATGCCCTTCTTCAGGCCTTGCTCCCTGTTCTTTCCCATTTCTaGACTACTCTGCCACAGTACCCGCACTCCTCAGGGTTAAGGACC | + |
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Preference number: 5 (lower is better) Translates to: HDALLQALLPVLSHF*TTLPQYPHSSGLRT Trigger: GGTCCTTAACCCTGAGGAGTGCGGGTACTGTGGCAGAGTAGTGCAGAAATGGGAAAGAACAGGGAGCAAGGCCTGAAGAAGGGCATCATG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000491857.1 |
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| CDS TCA 90 bp | TCAAAGGACTTAGCTATGGTAGAAATACTCCCAGCCCCAGAGGGATaGGGATCTAAATTCAAGGACTTTAAACCTGATGGGGGCAGGGTT | + |
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Preference number: 5 (lower is better) Translates to: SKDLAMVEILPAPEG*GSKFKDFKPDGGRV Trigger: AACCCTGCCCCCATCAGGTTTAAAGTCCTTGAATTTAGATCCTCATCCCTCTGGGGCTGGGAGTATTTCTACCATAGCTAAGTCCTTTGA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000470396.1 |
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| CDS TCA 90 bp | TGGTCAGCACTTCACAGTCACTGGGATGTAGGAAAAGCATTTCAGTaGATTCAGGTCAGCACAAGTACCTCTAAACTGTGTCTAACTTTT | + |
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Preference number: 5 (lower is better) Translates to: WSALHSHWDVGKAFQ*IQVSTSTSKLCLTF Trigger: AAAAGTTAGACACAGTTTAGAGGTACTTGTGCTGACCTGAATTCACTGAAATGCTTTTCCTACATCCCAGTGACTGTGAAGTGCTGACCA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000469786.2 |
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| CDS TCA 90 bp | CTATTGACATTTACACTAAATAGTGCAGAAGGCAGTCTAGGAAGGTaGTGGGCAAAAGCAGCTTCATGGAATCTAAAGAAGAGTAGCATG | + |
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Preference number: 5 (lower is better) Translates to: LLTFTLNSAEGSLGR*WAKAASWNLKKSSM Trigger: CATGCTACTCTTCTTTAGATTCCATGAAGCTGCTTTTGCCCATCACCTTCCTAGACTGCCTTCTGCACTATTTAGTGTAAATGTCAATAG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000461434.1 |
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| CDS CCA 72 bp | GTTCTCCTGAGGGCTGGAAGACCTCAGTCCCAAACATaGGCTCCCCACATTCCCCAGCTGCCACTTGGACTC | + |
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Preference number: 6 (lower is better) Translates to: VLLRAGRPQSQT*APHIPQLPLGL Trigger: GAGTCCAAGTGGCAGCTGGGGAATGTGGGGAGCCCATGTTTGGGACTGAGGTCTTCCAGCCCTCAGGAGAAC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000462970.5 |
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| CDS GCA 72 bp | ACATATTCCTACCCTGTCAGACCTCCACACTCTCCCTaGAGTGCCTACACCCAGCTTTCAATGTTTAGCATC | + |
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Preference number: 6 (lower is better) Translates to: TYSYPVRPPHSP*SAYTQLSMFSI Trigger: GATGCTAAACATTGAAAGCTGGGTGTAGGCACTGCAGGGAGAGTGTGGAGGTCTGACAGGGTAGGAATATGT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000476855.5 |
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| CDS CAA 72 bp | GAAAGGACCCGCCGCATAAAAGCATACAGAAATCTATaGACCTCCCCAAGGTCCTCCAACAGAATCACTGAA | + |
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Preference number: 6 (lower is better) Translates to: ERTRRIKAYRNL*TSPRSSNRITE Trigger: TTCAGTGATTCTGTTGGAGGACCTTGGGGAGGTCAATAGATTTCTGTATGCTTTTATGCGGCGGGTCCTTTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000462970.5 |
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| CDS TCA 72 bp | TTAGCTATGGTAGAAATACTCCCAGCCCCAGAGGGATaGGGATCTAAATTCAAGGACTTTAAACCTGATGGG | + |
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Preference number: 6 (lower is better) Translates to: LAMVEILPAPEG*GSKFKDFKPDG Trigger: CCCATCAGGTTTAAAGTCCTTGAATTTAGATCCTCATCCCTCTGGGGCTGGGAGTATTTCTACCATAGCTAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000470396.1 |
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