Pregenerated sensors for PSMD2 (Homo sapiens)
Ensembl gene IDs: ENSG00000175166Ensembl transcript IDs: ENST00000310118.9, ENST00000432855.1, ENST00000433010.5, ENST00000435761.5, ENST00000439383.5, ENST00000466987.1, ENST00000476461.1, ENST00000485937.1, ENST00000487475.5, ENST00000488085.1, ENST00000491149.5, ENST00000491494.1, ENST00000492191.5, ENST00000496925.5
Found 45 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | GGAGGTGACAGCGCGGAACGGAGAATGAGGAGCAGAGAGGCAAGGTaGCGGGAGTCCCGAGGGTCGCCCCAACCGCCCTCTCCCTGGCGC | + |
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Preference number: 1 (lower is better) Translates to: GGDSAERRMRSREAR*RESRGSPQPPSPWR Trigger: GCGCCAGGGAGAGGGCGGTTGGGGCGACCCTCGGGACTCCCGGCACCTTGCCTCTCTGCTCCTCATTCTCCGTTCCGCGCTGTCACCTCC 70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000433010.5 |
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| 3UTR TCA 90 bp | TCCACTTCACGCGGCGGTGGTGAGGGTTGGTGGGGACGGCGGAGGTaGCAGCGCGGAACGGAGAATGAGGAGCAGAGAGGCAAGGTGCCG | + |
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Preference number: 1 (lower is better) Translates to: STSRGGGEGWWGRRR*QRGTENEEQRGKVP Trigger: CGGCACCTTGCCTCTCTGCTCCTCATTCTCCGTTCCGCGCTGTCACCTCCGCCGTCCCCACCAACCCTCACCACCGCCGCGTGAAGTGGA 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000433010.5 |
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| 3UTR TCA 90 bp | GTTTATCCTCTTCAGACTGCCCGAGTCCACTTCACGCGGCGGTGGTaGGGGTTGGTGGGGACGGCGGAGGTGACAGCGCGGAACGGAGAA | + |
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Preference number: 1 (lower is better) Translates to: VYPLQTARVHFTRRW*GLVGTAEVTARNGE Trigger: TTCTCCGTTCCGCGCTGTCACCTCCGCCGTCCCCACCAACCCTCACCACCGCCGCGTGAAGTGGACTCGGGCAGTCTGAAGAGGATAAAC 63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000433010.5 |
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| 3UTR-3UTR CCA 90 bp | GAGGAGCAGAGAGGCAAGGTGCCGGGAGTCCCGAGGGTCGCCCCAACCGCCCTCGCGCGGTGGGGTAGTTaGGTGTCGGGCCTGAGGCCT | + |
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Preference number: 2 (lower is better) Translates to: EEQRGKVPGVPRVAPTALARWGS*VSGLRP Trigger: AGGCCTCAGGCCCGACACCCAACTACCCCACCGCGC...GAGGGCGGTTGGGGCGACCCTCGGGACTCCCGGCACCTTGCCTCTCTGCTCCTC 71% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000433010.5 |
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| 3UTR-3UTR CCA 90 bp | GGCGGAGGTGACAGCGCGGAACGGAGAATGAGGAGCAGAGAGGCAAGGTGCCGGCTCTCCCTGGCGCGGTaGGGTAGTTGGGTGTCGGGC | + |
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Preference number: 2 (lower is better) Translates to: GGGDSAERRMRSREARCRLSLAR*GSWVSG Trigger: GCCCGACACCCAACTACCCCACCGCGCCAGGGAGAG...CCGGCACCTTGCCTCTCTGCTCCTCATTCTCCGTTCCGCGCTGTCACCTCCGCC 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000433010.5 |
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| 3UTR-3UTR GCA 90 bp | GGCGGAGGTGACAGCGCGGAACGGAGAATGAGGAGCAGAGAGGCAAGGTGCCGGGCAAGCCTCATGCTCTaGATTGTGGGCCATGTTATA | + |
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Preference number: 2 (lower is better) Translates to: GGGDSAERRMRSREARCRASLML*IVGHVI Trigger: TATAACATGGCCCACAATGCAGAGCATGAGGCTTGC...CCGGCACCTTGCCTCTCTGCTCCTCATTCTCCGTTCCGCGCTGTCACCTCCGCC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000433010.5 |
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| 3UTR TCA 72 bp | CGCGGCGGTGGTGAGGGTTGGTGGGGACGGCGGAGGTaGCAGCGCGGAACGGAGAATGAGGAGCAGAGAGGC | + |
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Preference number: 3 (lower is better) Translates to: RGGGEGWWGRRR*QRGTENEEQRG Trigger: GCCTCTCTGCTCCTCATTCTCCGTTCCGCGCTGTCACCTCCGCCGTCCCCACCAACCCTCACCACCGCCGCG 69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000433010.5 |
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| 3UTR TCA 72 bp | CTTCAGACTGCCCGAGTCCACTTCACGCGGCGGTGGTaGGGGTTGGTGGGGACGGCGGAGGTGACAGCGCGG | + |
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Preference number: 3 (lower is better) Translates to: LQTARVHFTRRW*GLVGTAEVTAR Trigger: CCGCGCTGTCACCTCCGCCGTCCCCACCAACCCTCACCACCGCCGCGTGAAGTGGACTCGGGCAGTCTGAAG 69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000433010.5 |
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| CDS-3UTR TCA 90 bp | GAGGAGCAGAGAGGCAAGGTGCCGGGAGTCCCGAGGGTCGCCCCAACCGCCCTCCCTGCGGAGCCGCCGTaGCTCAGCCCCGCAGCCTCC | + |
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Preference number: 4 (lower is better) Translates to: EEQRGKVPGVPRVAPTALPAEPP*LSPAAS Trigger: GGAGGCTGCGGGGCTGAGTCACGGCGGCTCCGCAGG...GAGGGCGGTTGGGGCGACCCTCGGGACTCCCGGCACCTTGCCTCTCTGCTCCTC 74% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000433010.5 |
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| CDS-3UTR TCA 90 bp | GAGGAGCAGAGAGGCAAGGTGCCGGGAGTCCCGAGGGTCGCCCCAACCGCCCTCGTTGGGTGTCGGGCCTaGGGCCTGCGGAGCCGCCGT | + |
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Preference number: 4 (lower is better) Translates to: EEQRGKVPGVPRVAPTALVGCRA*GLRSRR Trigger: ACGGCGGCTCCGCAGGCCTCAGGCCCGACACCCAAC...GAGGGCGGTTGGGGCGACCCTCGGGACTCCCGGCACCTTGCCTCTCTGCTCCTC 73% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000433010.5 |
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| CDS-3UTR TCA 90 bp | GAGGAGCAGAGAGGCAAGGTGCCGGGAGTCCCGAGGGTCGCCCCAACCGCCCTCTTCACGCGGCGGTGGTaGGGGTTGGTGGGGACGGCG | + |
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Preference number: 4 (lower is better) Translates to: EEQRGKVPGVPRVAPTALFTRRW*GLVGTA Trigger: CGCCGTCCCCACCAACCCTCACCACCGCCGCGTGAA...GAGGGCGGTTGGGGCGACCCTCGGGACTCCCGGCACCTTGCCTCTCTGCTCCTC 72% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENST00000433010.5 |
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| CDS-3UTR CCA 90 bp | CAGAGAGGCAAGGTGCCGGGAGTCCCGAGGGTCGCCCCAACCGCCCTCTCCCTGGCCGCTGGAGACTGCTaGGGCTGCACCGGCGCCTTG | + |
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Preference number: 4 (lower is better) Translates to: QRGKVPGVPRVAPTALSLAAGDC*GCTGAL Trigger: CAAGGCGCCGGTGCAGCCCCAGCAGTCTCCAGCGGC...CAGGGAGAGGGCGGTTGGGGCGACCCTCGGGACTCCCGGCACCTTGCCTCTCTG 72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000433010.5 |
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| CDS-3UTR CCA 90 bp | ACCGCCCTCTCCCTGGCGCGGTGGGGTAGTTGGGTGTCGGGCCTGAGGCCTGCGCTCTCCCTGGCGCGGTaGGGTAGTTGGGTGTCGGGC | + |
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Preference number: 4 (lower is better) Translates to: TALSLARWGSWVSGLRPALSLAR*GSWVSG Trigger: GCCCGACACCCAACTACCCCACCGCGCCAGGGAGAG...CGCAGGCCTCAGGCCCGACACCCAACTACCCCACCGCGCCAGGGAGAGGGCGGT 72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000433010.5 |
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| CDS-3UTR TCA 90 bp | CAGAGAGGCAAGGTGCCGGGAGTCCCGAGGGTCGCCCCAACCGCCCTCTCCCTGTGGGGACGGCGGAGGTaGCAGCGCGGAACGGAGAAT | + |
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Preference number: 4 (lower is better) Translates to: QRGKVPGVPRVAPTALSLWGRRR*QRGTEN Trigger: ATTCTCCGTTCCGCGCTGTCACCTCCGCCGTCCCCA...CAGGGAGAGGGCGGTTGGGGCGACCCTCGGGACTCCCGGCACCTTGCCTCTCTG 70% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000433010.5 |
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| CDS-3UTR GCA 90 bp | GGCGGAGGTGACAGCGCGGAACGGAGAATGAGGAGCAGAGAGGCAAGGTGCCGGGGAGACTGCTGGGGCTaGACCGGCGCCTTGTCCCGG | + |
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Preference number: 4 (lower is better) Translates to: GGGDSAERRMRSREARCRGDCWG*TGALSR Trigger: CCGGGACAAGGCGCCGGTGCAGCCCCAGCAGTCTCC...CCGGCACCTTGCCTCTCTGCTCCTCATTCTCCGTTCCGCGCTGTCACCTCCGCC 69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000433010.5 |
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| CDS-3UTR GCA 90 bp | GGCGGAGGTGACAGCGCGGAACGGAGAATGAGGAGCAGAGAGGCAAGGTGCCGGGTCGGGCCTGAGGCCTaGGGAGCCGCCGTGACTCAG | + |
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Preference number: 4 (lower is better) Translates to: GGGDSAERRMRSREARCRVGPEA*GAAVTQ Trigger: CTGAGTCACGGCGGCTCCGCAGGCCTCAGGCCCGAC...CCGGCACCTTGCCTCTCTGCTCCTCATTCTCCGTTCCGCGCTGTCACCTCCGCC 69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000433010.5 |
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| CDS-3UTR CCA 90 bp | GAGGAGCAGAGAGGCAAGGTGCCGGGAGTCCCGAGGGTCGCCCCAACCGCCCTCAGCAGAGGCTCCCGCTaGACCTTCTCTGCGTCATCC | + |
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Preference number: 4 (lower is better) Translates to: EEQRGKVPGVPRVAPTALSRGSR*TFSASS Trigger: GGATGACGCAGAGAAGGTCCAGCGGGAGCCTCTGCT...GAGGGCGGTTGGGGCGACCCTCGGGACTCCCGGCACCTTGCCTCTCTGCTCCTC 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000433010.5 |
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| CDS-3UTR GCA 90 bp | CAGAGAGGCAAGGTGCCGGGAGTCCCGAGGGTCGCCCCAACCGCCCTCTCCCTGAGGTCGCAAGCCTCATaGTCTGCATTGTGGGCCATG | + |
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Preference number: 4 (lower is better) Translates to: QRGKVPGVPRVAPTALSLRSQAS*SALWAM Trigger: CATGGCCCACAATGCAGAGCATGAGGCTTGCGACCT...CAGGGAGAGGGCGGTTGGGGCGACCCTCGGGACTCCCGGCACCTTGCCTCTCTG 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000433010.5 |
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| CDS-3UTR TCA 90 bp | GGCGGAGGTGACAGCGCGGAACGGAGAATGAGGAGCAGAGAGGCAAGGTGCCGGGCGCGGAACGGAGAATaGGGAGCAGAGAGGCAAGGT | + |
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Preference number: 4 (lower is better) Translates to: GGGDSAERRMRSREARCRARNGE*GAERQG Trigger: ACCTTGCCTCTCTGCTCCTCATTCTCCGTTCCGCGC...CCGGCACCTTGCCTCTCTGCTCCTCATTCTCCGTTCCGCGCTGTCACCTCCGCC 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000433010.5 |
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| CDS-3UTR TCA 90 bp | GGCGGAGGTGACAGCGCGGAACGGAGAATGAGGAGCAGAGAGGCAAGGTGCCGGCTCCTGCCAGATGCCTaGCATACTCATGACCCCATG | + |
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Preference number: 4 (lower is better) Translates to: GGGDSAERRMRSREARCRLLPDA*HTHDPM Trigger: CATGGGGTCATGAGTATGTCAGGCATCTGGCAGGAG...CCGGCACCTTGCCTCTCTGCTCCTCATTCTCCGTTCCGCGCTGTCACCTCCGCC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000433010.5 |
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| CDS TCA 90 bp | AAATGCTCTGGGAAAATAGAGGAGGCGCAATTGAGAGAGAGGTGCTaGGGAGGGCATGCCTGCCACCCTTCCCTACCATGTTCACTCACC | + |
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Preference number: 5 (lower is better) Translates to: KCSGKIEEAQLRERC*GGHACHPSLPCSLT Trigger: GGTGAGTGAACATGGTAGGGAAGGGTGGCAGGCATGCCCTCCTCAGCACCTCTCTCTCAATTGCGCCTCCTCTATTTTCCCAGAGCATTT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000491149.5 |
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| CDS CCA 90 bp | AGCTTCAGGGGAAGCACTTCTCTGTGGGTCAAGGAATCCAGCGTCTaGGAAATTCAATACACTGATGCTCCAAGACAGATTGTACTCCAC | + |
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Preference number: 5 (lower is better) Translates to: SFRGSTSLWVKESSV*EIQYTDAPRQIVLH Trigger: GTGGAGTACAATCTGTCTTGGAGCATCAGTGTATTGAATTTCCCAGACGCTGGATTCCTTGACCCACAGAGAAGTGCTTCCCCTGAAGCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000485937.1 ENST00000487475.5 |
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| CDS TCA 90 bp | AATACACTGATGCTCCAAGACAGATTGTACTCCACAAGAAAATTCTaGATTATCTCAGAGCCTCAGAGCCCCCTTCGGATTCCCAAGAAG | + |
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Preference number: 5 (lower is better) Translates to: NTLMLQDRLYSTRKF*IISEPQSPLRIPKK Trigger: CTTCTTGGGAATCCGAAGGGGGCTCTGAGGCTCTGAGATAATTCAGAATTTTCTTGTGGAGTACAATCTGTCTTGGAGCATCAGTGTATT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000487475.5 |
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| CDS GCA 90 bp | CCTTCCTTTCAGCTCTTCTGTAGATATTTTGACTGTGATGAACTCTaGTCAAATAGATCACGGCTTAGGTCTATCAGGCTTCCTGTGACT | + |
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Preference number: 5 (lower is better) Translates to: PSFQLFCRYFDCDEL*SNRSRLRSIRLPVT Trigger: AGTCACAGGAAGCCTGATAGACCTAAGCCGTGATCTATTTGAGCAGAGTTCATCACAGTCAAAATATCTACAGAAGAGCTGAAAGGAAGG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000492191.5 |
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| CDS TCA 90 bp | TTCTCTGTGGGTCAAGGAATCCAGCGTCTGGGAAATTCAATACACTaGTGCTCCAAGACAGATTGTACTCCACAAGAAAATTCTGAATTA | + |
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Preference number: 5 (lower is better) Translates to: FSVGQGIQRLGNSIH*CSKTDCTPQENSEL Trigger: TAATTCAGAATTTTCTTGTGGAGTACAATCTGTCTTGGAGCATCAGTGTATTGAATTTCCCAGACGCTGGATTCCTTGACCCACAGAGAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000487475.5 |
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| CDS TCA 90 bp | TCCTATACCAGGGAAGAATCTATTAGTCTTAAAATGGCCCTATCCTaGGGATCCTGTTATTATAAAGAGCTCTCCAAAGAACTGCATGGT | + |
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Preference number: 5 (lower is better) Translates to: SYTREESISLKMALS*GSCYYKELSKELHG Trigger: ACCATGCAGTTCTTTGGAGAGCTCTTTATAATAACAGGATCCTCAGGATAGGGCCATTTTAAGACTAATAGATTCTTCCCTGGTATAGGA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000466987.1 |
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| CDS CCA 90 bp | GCACTCAACATTCCTATACCAGGGAAGAATCTATTAGTCTTAAAATaGCCCTATCCTGAGGATCCTGTTATTATAAAGAGCTCTCCAAAG | + |
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Preference number: 5 (lower is better) Translates to: ALNIPIPGKNLLVLK*PYPEDPVIIKSSPK Trigger: CTTTGGAGAGCTCTTTATAATAACAGGATCCTCAGGATAGGGCCATTTTAAGACTAATAGATTCTTCCCTGGTATAGGAATGTTGAGTGC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000466987.1 |
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| CDS TCA 72 bp | AGTTGGGTGTCGGGCCTGAGGCCTGCGGAGCCGCCGTaGCTCAGCCCCGCAGCCTCCTTCGCCGACTCTCGG | + |
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Preference number: 6 (lower is better) Translates to: SWVSGLRPAEPP*LSPAASFADSR Trigger: CCGAGAGTCGGCGAAGGAGGCTGCGGGGCTGAGTCACGGCGGCTCCGCAGGCCTCAGGCCCGACACCCAACT 72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000433010.5 ENST00000476461.1 |
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| CDS GCA 72 bp | GGAGGCGCAATTGAGAGAGAGGTGCTGAGGAGGGCATaGCTGCCACCCTTCCCTACCATGTTCACTCACCTG | + |
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Preference number: 6 (lower is better) Translates to: GGAIEREVLRRA*LPPFPTMFTHL Trigger: CAGGTGAGTGAACATGGTAGGGAAGGGTGGCAGGCATGCCCTCCTCAGCACCTCTCTCTCAATTGCGCCTCC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000491149.5 |
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| CDS CCA 72 bp | GTGAAGAATAAGCCTGCCTCCTTAGGAGGGGCCAGGTaGACAAGGAAACCGAGTGGGAATGGGAAGCCCTGG | + |
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Preference number: 6 (lower is better) Translates to: VKNKPASLGGAR*TRKPSGNGKPW Trigger: CCAGGGCTTCCCATTCCCACTCGGTTTCCTTGTCCACCTGGCCCCTCCTAAGGAGGCAGGCTTATTCTTCAC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000476461.1 |
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| CDS TCA 72 bp | GGGAAAATAGAGGAGGCGCAATTGAGAGAGAGGTGCTaGGGAGGGCATGCCTGCCACCCTTCCCTACCATGT | + |
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Preference number: 6 (lower is better) Translates to: GKIEEAQLRERC*GGHACHPSLPC Trigger: ACATGGTAGGGAAGGGTGGCAGGCATGCCCTCCTCAGCACCTCTCTCTCAATTGCGCCTCCTCTATTTTCCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000491149.5 |
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| CDS TCA 72 bp | AAAGGGCCCAGTTCCTGTTCTCCAGAGTGTACAGGCTaGGCACTACCAGAAAGACAAGCGAGGAACCTTACC | + |
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Preference number: 6 (lower is better) Translates to: KGPSSCSPECTG*ALPERQARNLT Trigger: GGTAAGGTTCCTCGCTTGTCTTTCTGGTAGTGCTCAGCCTGTACACTCTGGAGAACAGGAACTGGGCCCTTT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000488085.1 |
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| CDS TCA 72 bp | CCCAATAGGCACAGTGGTAGCCCTTGGCAATATGGGTaGAAAGGGCCCAGTTCCTGTTCTCCAGAGTGTACA | + |
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Preference number: 6 (lower is better) Translates to: PNRHSGSPWQYG*KGPSSCSPECT Trigger: TGTACACTCTGGAGAACAGGAACTGGGCCCTTTTCACCCATATTGCCAAGGGCTACCACTGTGCCTATTGGG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000488085.1 |
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| CDS CAA 72 bp | TGTGCTCCCATGTCAGCAGGGGCTTCCTTCTTGTCCTaGTCTTTCTTTTCCTTCTTGTCTTTGTCTTCCTCC | + |
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Preference number: 6 (lower is better) Translates to: CAPMSAGASFLS*SFFSFLSLSSS Trigger: GGAGGAAGACAAAGACAAGAAGGAAAAGAAAGACAAGGACAAGAAGGAAGCCCCTGCTGACATGGGAGCACA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 5 transcripts: ENST00000310118.9 ENST00000432855.1 ENST00000435761.5 ENST00000439383.5 ENST00000496925.5 |
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| CDS TCA 72 bp | GTTTCAGCAAAGCAAGTATATGTACATTCTCCAGTTTaGGAATACAGCCTGAGCCCTCCCCTCTACTCAGCC | + |
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Preference number: 6 (lower is better) Translates to: VSAKQVYVHSPV*EYSLSPPLYSA Trigger: GGCTGAGTAGAGGGGAGGGCTCAGGCTGTATTCTCAAACTGGAGAATGTACATATACTTGCTTTGCTGAAAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000491494.1 |
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| CDS CCA 72 bp | GGAAGCACTTCTCTGTGGGTCAAGGAATCCAGCGTCTaGGAAATTCAATACACTGATGCTCCAAGACAGATT | + |
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Preference number: 6 (lower is better) Translates to: GSTSLWVKESSV*EIQYTDAPRQI Trigger: AATCTGTCTTGGAGCATCAGTGTATTGAATTTCCCAGACGCTGGATTCCTTGACCCACAGAGAAGTGCTTCC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000485937.1 ENST00000487475.5 |
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| CDS CAA 90 bp | GCAGGGGCTTCCTTCTTGTCCTTGTCTTTCTTTTCCTTCTTGTCTTaGTCTTCCTCCTTCTCTTTGGAGTCAAAGTGTTCGCTACAAATG | + |
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Preference number: 6 (lower is better) Translates to: AGASFLSLSFFSFLS*SSSFSLESKCSLQM Trigger: CATTTGTAGCGAACACTTTGACTCCAAAGAGAAGGAGGAAGACAAAGACAAGAAGGAAAAGAAAGACAAGGACAAGAAGGAAGCCCCTGC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 5 transcripts: ENST00000310118.9 ENST00000432855.1 ENST00000435761.5 ENST00000439383.5 ENST00000496925.5 |
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| CDS TCA 72 bp | ATGCTCCAAGACAGATTGTACTCCACAAGAAAATTCTaGATTATCTCAGAGCCTCAGAGCCCCCTTCGGATT | + |
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Preference number: 6 (lower is better) Translates to: MLQDRLYSTRKF*IISEPQSPLRI Trigger: AATCCGAAGGGGGCTCTGAGGCTCTGAGATAATTCAGAATTTTCTTGTGGAGTACAATCTGTCTTGGAGCAT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000487475.5 |
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| CDS GCA 72 bp | CACACACATCAAAAGATTAACTACAGCGTGATGCTATaGTTGAGCAAATGCTCTGGGAAAATAGAGGAGGCG | + |
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Preference number: 6 (lower is better) Translates to: HTHQKINYSVML*LSKCSGKIEEA Trigger: CGCCTCCTCTATTTTCCCAGAGCATTTGCTCAAGCATAGCATCACGCTGTAGTTAATCTTTTGATGTGTGTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000491149.5 |
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| CDS CAA 90 bp | GAAACTCACACACATCAAAAGATTAACTACAGCGTGATGCTATGCTaGAGCAAATGCTCTGGGAAAATAGAGGAGGCGCAATTGAGAGAG | + |
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Preference number: 6 (lower is better) Translates to: ETHTHQKINYSVMLC*SKCSGKIEEAQLRE Trigger: CTCTCTCAATTGCGCCTCCTCTATTTTCCCAGAGCATTTGCTCAAGCATAGCATCACGCTGTAGTTAATCTTTTGATGTGTGTGAGTTTC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000491149.5 |
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| CDS CAA 72 bp | ACACATCAAAAGATTAACTACAGCGTGATGCTATGCTaGAGCAAATGCTCTGGGAAAATAGAGGAGGCGCAA | + |
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Preference number: 6 (lower is better) Translates to: THQKINYSVMLC*SKCSGKIEEAQ Trigger: TTGCGCCTCCTCTATTTTCCCAGAGCATTTGCTCAAGCATAGCATCACGCTGTAGTTAATCTTTTGATGTGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000491149.5 |
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| CDS CAA 72 bp | GAAGCTGACCTTCCTTTCAGCTCTTCTGTAGATATTTaGACTGTGATGAACTCTGCTCAAATAGATCACGGC | + |
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Preference number: 6 (lower is better) Translates to: EADLPFSSSVDI*TVMNSAQIDHG Trigger: GCCGTGATCTATTTGAGCAGAGTTCATCACAGTCAAAATATCTACAGAAGAGCTGAAAGGAAGGTCAGCTTC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000492191.5 |
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| CDS GCA 72 bp | CAGCTCTTCTGTAGATATTTTGACTGTGATGAACTCTaGTCAAATAGATCACGGCTTAGGTCTATCAGGCTT | + |
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Preference number: 6 (lower is better) Translates to: QLFCRYFDCDEL*SNRSRLRSIRL Trigger: AAGCCTGATAGACCTAAGCCGTGATCTATTTGAGCAGAGTTCATCACAGTCAAAATATCTACAGAAGAGCTG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000492191.5 |
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| CDS TCA 72 bp | AAGAACTGCATGGTGGATCCCTTGTCAGATAACTTATaGCTCCAAGAGGACAAAAGAAGTGATCAAAGCAAA | + |
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Preference number: 6 (lower is better) Translates to: KNCMVDPLSDNL*LQEDKRSDQSK Trigger: TTTGCTTTGATCACTTCTTTTGTCCTCTTGGAGTCATAAGTTATCTGACAAGGGATCCACCATGCAGTTCTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000466987.1 |
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| CDS TCA 72 bp | AGGGAAGAATCTATTAGTCTTAAAATGGCCCTATCCTaGGGATCCTGTTATTATAAAGAGCTCTCCAAAGAA | + |
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Preference number: 6 (lower is better) Translates to: REESISLKMALS*GSCYYKELSKE Trigger: TTCTTTGGAGAGCTCTTTATAATAACAGGATCCTCAGGATAGGGCCATTTTAAGACTAATAGATTCTTCCCT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000466987.1 |
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