Pregenerated sensors for PSMA6 (Homo sapiens)
Ensembl gene IDs: ENSG00000100902Ensembl transcript IDs: ENST00000553688.5, ENST00000554457.1, ENST00000554541.5, ENST00000555764.5, ENST00000622405.4, ENST00000627895.2, ENST00000628955.1
Found 23 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR CAA 90 bp | CATTTAAATTACAGGAGCATTCAAACAGATGTGGGTAAAAAGGGGATGCCAATCAGAGCAGCTCTAGAATaGAGTCACTCATTCTATCAG | + |
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Preference number: 3 (lower is better) Translates to: HLNYRSIQTDVGKKGMPIRAALE*SHSFYQ Trigger: CTGATAGAATGAGTGACTCAATTCTAGAGCTGCTCT...GATTGGCATCCCCTTTTTACCCACATCTGTTTGAATGCTCCTGTAATTTAAATG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000553688.5 |
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| CDS-3UTR GCA 90 bp | GGGGATGCCAATCTCAAGAGCAGCTCTAGAATTGAGTCACTCATTCTATCAGATATAGCAGGCTTCGAGTaGCTGTGTGGAATTAACCAC | + |
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Preference number: 4 (lower is better) Translates to: GDANLKSSSRIESLILSDIAGFE*LCGINH Trigger: GTGGTTAATTCCACACAGGCACTCGAAGCCTGCTAT...ATCTGATAGAATGAGTGACTCAATTCTAGAGCTGCTCTTGAGATTGGCATCCCC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000553688.5 |
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| CDS-3UTR GCA 90 bp | AGAGCAGCTCTAGAATTGAGTCACTCATTCTATCAGATTCCCAAAGATGTCTTGTGGGTAAAAAGGGGATaGCAATCTCAAGAGCAGCTC | + |
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Preference number: 4 (lower is better) Translates to: RAALELSHSFYQIPKDVLWVKRG*QSQEQL Trigger: GAGCTGCTCTTGAGATTGGCATCCCCTTTTTACCCA...CAAGACATCTTTGGGAATCTGATAGAATGAGTGACTCAATTCTAGAGCTGCTCT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000553688.5 |
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| CDS-3UTR CCA 90 bp | GGGGATGCCAATCTCAAGAGCAGCTCTAGAATTGAGTCACTCATTCTATCAGATGCATTCAAACAGATGTaGGTAAAAAGGGGATGCCAA | + |
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Preference number: 4 (lower is better) Translates to: GDANLKSSSRIESLILSDAFKQM*VKRGCQ Trigger: TTGGCATCCCCTTTTTACCCACATCTGTTTGAATGC...ATCTGATAGAATGAGTGACTCAATTCTAGAGCTGCTCTTGAGATTGGCATCCCC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENST00000553688.5 |
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| CDS-3UTR CCA 90 bp | GCTCTAGAATTGAGTCACTCATTCTATCAGATTCCCAAAGATGTCTTGAACTCTAGGACTAGCAGTGTCTaGTATATAGCAGGCTTCGAG | + |
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Preference number: 4 (lower is better) Translates to: ALELSHSFYQIPKDVLNSRTSSV*YIAGFE Trigger: CTCGAAGCCTGCTATATACCAGACACTGCTAGTCCT...AGAGTTCAAGACATCTTTGGGAATCTGATAGAATGAGTGACTCAATTCTAGAGC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000553688.5 |
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| CDS-3UTR CAA 90 bp | GGGGATGCCAATCTCAAGAGCAGCTCTAGAATTGAGTCACTCATTCTATCAGATAGAAGTCCATGCTACTaGGTAGAGCCGACCCTCGGG | + |
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Preference number: 5 (lower is better) Translates to: GDANLKSSSRIESLILSDRSPCY*VEPTLG Trigger: CCCGAGGGTCGGCTCTACCAAGTAGCATGGACTTCT...ATCTGATAGAATGAGTGACTCAATTCTAGAGCTGCTCTTGAGATTGGCATCCCC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000553688.5 |
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| CDS GCA 90 bp | GTATCTCCTAGGACTAGCAGTGTCTGGTATATAGCAGGCTTCGAGTaGCTGTGTGGAATTAACCACAGAAGTCCATGCTACTTGGTAGAG | + |
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Preference number: 5 (lower is better) Translates to: VSPRTSSVWYIAGFE*LCGINHRSPCYLVE Trigger: CTCTACCAAGTAGCATGGACTTCTGTGGTTAATTCCACACAGGCACTCGAAGCCTGCTATATACCAGACACTGCTAGTCCTAGGAGATAC 48% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000553688.5 ENST00000628955.1 |
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| CDS CCA 90 bp | GAGGGTGTAACATTCACATTTGTATCTCCTAGGACTAGCAGTGTCTaGTATATAGCAGGCTTCGAGTGCCTGTGTGGAATTAACCACAGA | + |
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Preference number: 5 (lower is better) Translates to: EGVTFTFVSPRTSSV*YIAGFECLCGINHR Trigger: TCTGTGGTTAATTCCACACAGGCACTCGAAGCCTGCTATATACCAGACACTGCTAGTCCTAGGAGATACAAATGTGAATGTTACACCCTC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000553688.5 ENST00000628955.1 |
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| CDS-3UTR CAA 90 bp | GTGGGTAAAAAGGGGATGCCAATCTCAAGAGCAGCTCTAGAATTGAGTCACTCAAGAGCAGCTCTAGAATaGAGTCACTCATTCTATCAG | + |
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Preference number: 5 (lower is better) Translates to: VGKKGMPISRAALELSHSRAALE*SHSFYQ Trigger: CTGATAGAATGAGTGACTCAATTCTAGAGCTGCTCT...TGAGTGACTCAATTCTAGAGCTGCTCTTGAGATTGGCATCCCCTTTTTACCCAC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000553688.5 |
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| CDS GCA 90 bp | CACACACACACACACACACACACACACACACACACATCCAGCAACTaGAAGTCAATTAGCTGTATTCAAAATTTGGGCTTTCCAAAGATC | + |
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Preference number: 5 (lower is better) Translates to: HTHTHTHTHTHTSSN*KSISCIQNLGFPKI Trigger: GATCTTTGGAAAGCCCAAATTTTGAATACAGCTAATTGACTTGCAGTTGCTGGATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000554457.1 |
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| CDS CCA 90 bp | TCTGTCGATTTAACTGCAGTATTTTCATTAAAGATAAGAGCATCCTaGTCCATGGTATATCAACTGCCTCACAGGGCTGCTGGGAGGATT | + |
|
Preference number: 5 (lower is better) Translates to: SVDLTAVFSLKIRAS*SMVYQLPHRAAGRI Trigger: AATCCTCCCAGCAGCCCTGTGAGGCAGTTGATATACCATGGACCAGGATGCTCTTATCTTTAATGAAAATACTGCAGTTAAATCGACAGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000554457.1 |
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| CDS TCA 90 bp | CTAGCTTATTCAAATCATGAGTCAATCAGGAGCTCCATGTTTCAATaGGGTAGTTCAATGTTACTAACAGACTGCTTAACTCTAATGTAT | + |
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Preference number: 5 (lower is better) Translates to: LAYSNHESIRSSMFQ*GSSMLLTDCLTLMY Trigger: ATACATTAGAGTTAAGCAGTCTGTTAGTAACATTGAACTACCTCATTGAAACATGGAGCTCCTGATTGACTCATGATTTGAATAAGCTAG 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000554457.1 |
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| CDS GCA 72 bp | CCAGGCACACAAGCACCTCCCGGAAGTTGCAGCGACTaGTTCCGGGGTACCAGCCGCGTTTCTTCCGCTCTT | + |
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Preference number: 6 (lower is better) Translates to: PGTQAPPGSCSD*FRGTSRVSSAL Trigger: AAGAGCGGAAGAAACGCGGCTGGTACCCCGGAAGCAGTCGCTGCAACTTCCGGGAGGTGCTTGTGTGCCTGG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENST00000554541.5 ENST00000622405.4 ENST00000627895.2 ENST00000628955.1 |
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| CDS GCA 72 bp | CTGCTTCCGGGGTACCAGCCGCGTTTCTTCCGCTCTTaGATGCCGAACTCACGGCTCTGGAGCCAGTTCGAG | + |
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Preference number: 6 (lower is better) Translates to: LLPGYQPRFFRS*MPNSRLWSQFE Trigger: CTCGAACTGGCTCCAGAGCCGTGAGTTCGGCATGCAAGAGCGGAAGAAACGCGGCTGGTACCCCGGAAGCAG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000622405.4 ENST00000627895.2 ENST00000628955.1 |
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| CDS CCA 72 bp | GTGGCGCCAGCCTGGCTCACTGCAACCTCAGGCTCGTaGATTCAAGCGAGTCTCCTGACTCAGTCTCCTGAG | + |
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Preference number: 6 (lower is better) Translates to: VAPAWLTATSGS*IQASLLTQSPE Trigger: CTCAGGAGACTGAGTCAGGAGACTCGCTTGAATCCACGAGCCTGAGGTTGCAGTGAGCCAGGCTGGCGCCAC 61% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000554457.1 |
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| CDS CAA 72 bp | ACTGCTTCCGGGGTACCAGCCGCGTTTCTTCCGCTCTaGCATGCCGAACTCACGGCTCTGGAGCCAGTTCGA | + |
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Preference number: 6 (lower is better) Translates to: TASGVPAAFLPL*HAELTALEPVR Trigger: TCGAACTGGCTCCAGAGCCGTGAGTTCGGCATGCAAGAGCGGAAGAAACGCGGCTGGTACCCCGGAAGCAGT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000622405.4 ENST00000627895.2 ENST00000628955.1 |
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| CDS CCA 72 bp | CATGACAGGGCAATTCAGGTGGCCCACAGGCGAACCTaGTTCACTCACCTACTTGGTAGAGCCGACCCTCGG | + |
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Preference number: 6 (lower is better) Translates to: HDRAIQVAHRRT*FTHLLGRADPR Trigger: CCGAGGGTCGGCTCTACCAAGTAGGTGAGTGAACCAGGTTCGCCTGTGGGCCACCTGAATTGCCCTGTCATG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000555764.5 |
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| CDS CCA 72 bp | ACATTCACATTTGTATCTCCTAGGACTAGCAGTGTCTaGTATATAGCAGGCTTCGAGTGCCTGTGTGGAATT | + |
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Preference number: 6 (lower is better) Translates to: TFTFVSPRTSSV*YIAGFECLCGI Trigger: AATTCCACACAGGCACTCGAAGCCTGCTATATACCAGACACTGCTAGTCCTAGGAGATACAAATGTGAATGT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000553688.5 ENST00000628955.1 |
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| CDS GCA 72 bp | ACACACACACACACACACACACACACATCCAGCAACTaGAAGTCAATTAGCTGTATTCAAAATTTGGGCTTT | + |
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Preference number: 6 (lower is better) Translates to: THTHTHTHTSSN*KSISCIQNLGF Trigger: AAAGCCCAAATTTTGAATACAGCTAATTGACTTGCAGTTGCTGGATGTGTGTGTGTGTGTGTGTGTGTGTGT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000554457.1 |
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| CDS TCA 72 bp | TCAAATCATGAGTCAATCAGGAGCTCCATGTTTCAATaGGGTAGTTCAATGTTACTAACAGACTGCTTAACT | + |
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Preference number: 6 (lower is better) Translates to: SNHESIRSSMFQ*GSSMLLTDCLT Trigger: AGTTAAGCAGTCTGTTAGTAACATTGAACTACCTCATTGAAACATGGAGCTCCTGATTGACTCATGATTTGA 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000554457.1 |
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| CDS TCA 72 bp | AATCTATACACACACTTATCTTCCCTCAGATTATTTTaGAGGAATTCCCAGATATTATACCACCTTCACCTA | + |
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Preference number: 6 (lower is better) Translates to: NLYTHLSSLRLF*RNSQILYHLHL Trigger: TAGGTGAAGGTGGTATAATATCTGGGAATTCCTTCAAAATAATCTGAGGGAAGATAAGTGTGTGTATAGATT 35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000554457.1 |
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| CDS CAA 72 bp | TATTTTCTAAATGATGTTTGCCTCGAAAGGAAGCAATaGTTTGGCAACCTTGTTAATGTGACCTATTACTAC | + |
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Preference number: 6 (lower is better) Translates to: YFLNDVCLERKQ*FGNLVNVTYYY Trigger: GTAGTAATAGGTCACATTAACAAGGTTGCCAAACAATTGCTTCCTTTCGAGGCAAACATCATTTAGAAAATA 35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000554457.1 |
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| CDS CAA 72 bp | AAATCTATACACACACTTATCTTCCCTCAGATTATTTaGAAGGAATTCCCAGATATTATACCACCTTCACCT | + |
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Preference number: 6 (lower is better) Translates to: KSIHTLIFPQII*KEFPDIIPPSP Trigger: AGGTGAAGGTGGTATAATATCTGGGAATTCCTTCAAAATAATCTGAGGGAAGATAAGTGTGTGTATAGATTT 35% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000554457.1 |
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