Pregenerated sensors for PSMA3 (Homo sapiens)
Ensembl gene IDs: ENSG00000100567Ensembl transcript IDs: ENST00000554456.1, ENST00000556321.1, ENST00000557290.1
Found 13 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | AAGCGGCTCCAAACCTCACTGCGGCGACGCCAAGCCGGCTACACCTaGGCTGAAAAGCTTCAGGAGTCACGGTCACCTGAGACGCAGGCC | + |
|
Preference number: 5 (lower is better) Translates to: KRLQTSLRRRQAGYT*AEKLQESRSPETQA Trigger: GGCCTGCGTCTCAGGTGACCGTGACTCCTGAAGCTTTTCAGCGCAGGTGTAGCCGGCTTGGCGTCGCCGCAGTGAGGTTTGGAGCCGCTT 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000554456.1 |
||
| CDS GCA 90 bp | GCTGAAGAAAGTGACTCAGCAATCCAAAGCGGCTCCAAACCTCACTaGGGCGACGCCAAGCCGGCTACACCTGCGCTGAAAAGCTTCAGG | + |
|
Preference number: 5 (lower is better) Translates to: AEESDSAIQSGSKPH*GDAKPATPALKSFR Trigger: CCTGAAGCTTTTCAGCGCAGGTGTAGCCGGCTTGGCGTCGCCGCAGTGAGGTTTGGAGCCGCTTTGGATTGCTGAGTCACTTTCTTCAGC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000554456.1 |
||
| CDS CCA 90 bp | AAGCACGATCTCCAGACCCCGGAATCCCAAATCTCACTGCCTCGGTaGTTCTCAAGAGAACACACTATTTCAAGCCCCACGAGTTTCCAC | + |
|
Preference number: 5 (lower is better) Translates to: KHDLQTPESQISLPR*FSREHTISSPTSFH Trigger: GTGGAAACTCGTGGGGCTTGAAATAGTGTGTTCTCTTGAGAACCACCGAGGCAGTGAGATTTGGGATTCCGGGGTCTGGAGATCGTGCTT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000554456.1 |
||
| CDS CCA 90 bp | ACACTATTTCAAGCCCCACGAGTTTCCACTTTCGGTTTCCCTAAGTaGCTGAAGAAAGTGACTCAGCAATCCAAAGCGGCTCCAAACCTC | + |
|
Preference number: 5 (lower is better) Translates to: TLFQAPRVSTFGFPK*LKKVTQQSKAAPNL Trigger: GAGGTTTGGAGCCGCTTTGGATTGCTGAGTCACTTTCTTCAGCCACTTAGGGAAACCGAAAGTGGAAACTCGTGGGGCTTGAAATAGTGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000554456.1 |
||
| CDS TCA 90 bp | TCTGTTCCGACAGGATTTCCAGTGACTCTTAAACTGAGCGGTCAATaGTCTGCACACTTAAAGACAGAGAAGGCCTGTGAATCAGCAGCA | + |
|
Preference number: 5 (lower is better) Translates to: SVPTGFPVTLKLSGQ*SAHLKTEKACESAA Trigger: TGCTGCTGATTCACAGGCCTTCTCTGTCTTTAAGTGTGCAGATCATTGACCGCTCAGTTTAAGAGTCACTGGAAATCCTGTCGGAACAGA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000554456.1 |
||
| CDS GCA 72 bp | CAAACCTCACTGCGGCGACGCCAAGCCGGCTACACCTaGGCTGAAAAGCTTCAGGAGTCACGGTCACCTGAG | + |
|
Preference number: 6 (lower is better) Translates to: QTSLRRRQAGYT*AEKLQESRSPE Trigger: CTCAGGTGACCGTGACTCCTGAAGCTTTTCAGCGCAGGTGTAGCCGGCTTGGCGTCGCCGCAGTGAGGTTTG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000554456.1 |
||
| CDS GCA 72 bp | AGTGACTCAGCAATCCAAAGCGGCTCCAAACCTCACTaGGGCGACGCCAAGCCGGCTACACCTGCGCTGAAA | + |
|
Preference number: 6 (lower is better) Translates to: SDSAIQSGSKPH*GDAKPATPALK Trigger: TTTCAGCGCAGGTGTAGCCGGCTTGGCGTCGCCGCAGTGAGGTTTGGAGCCGCTTTGGATTGCTGAGTCACT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000554456.1 |
||
| CDS CCA 72 bp | CTCCAGACCCCGGAATCCCAAATCTCACTGCCTCGGTaGTTCTCAAGAGAACACACTATTTCAAGCCCCACG | + |
|
Preference number: 6 (lower is better) Translates to: LQTPESQISLPR*FSREHTISSPT Trigger: CGTGGGGCTTGAAATAGTGTGTTCTCTTGAGAACCACCGAGGCAGTGAGATTTGGGATTCCGGGGTCTGGAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000554456.1 |
||
| CDS GCA 72 bp | CAGAGAAGGCCTGTGAATCAGCAGCACCCTAGGAACTaGAAACGCAGTCCACAAAAAGCACGATCTCCAGAC | + |
|
Preference number: 6 (lower is better) Translates to: QRRPVNQQHPRN*KRSPQKARSPD Trigger: GTCTGGAGATCGTGCTTTTTGTGGACTGCGTTTGCAGTTCCTAGGGTGCTGCTGATTCACAGGCCTTCTCTG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000554456.1 |
||
| CDS CCA 72 bp | CAAGCCCCACGAGTTTCCACTTTCGGTTTCCCTAAGTaGCTGAAGAAAGTGACTCAGCAATCCAAAGCGGCT | + |
|
Preference number: 6 (lower is better) Translates to: QAPRVSTFGFPK*LKKVTQQSKAA Trigger: AGCCGCTTTGGATTGCTGAGTCACTTTCTTCAGCCACTTAGGGAAACCGAAAGTGGAAACTCGTGGGGCTTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000554456.1 |
||
| CDS GCA 72 bp | TATGCATGCACATACATGGCCACTCTGTCTGCAAGATaGTATGGAGGGAAGCAGAAGAGCTTATTAATAAAC | + |
|
Preference number: 6 (lower is better) Translates to: YACTYMATLSAR*YGGKQKSLLIN Trigger: GTTTATTAATAAGCTCTTCTGCTTCCCTCCATAGCATCTTGCAGACAGAGTGGCCATGTATGTGCATGCATA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000556321.1 |
||
| CDS CCA 72 bp | ATGCACATACATGGCCACTCTGTCTGCAAGATGCTATaGAGGGAAGCAGAAGAGCTTATTAATAAACTTCTA | + |
|
Preference number: 6 (lower is better) Translates to: MHIHGHSVCKML*REAEELINKLL Trigger: TAGAAGTTTATTAATAAGCTCTTCTGCTTCCCTCCATAGCATCTTGCAGACAGAGTGGCCATGTATGTGCAT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000556321.1 |
||
| CDS TCA 72 bp | AAAGGGAAAGGTAAGATTTTGGTAACCTCCAAACATTaGAGTAGTTCACAGACCCAAAGTCAGTACAAATTA | + |
|
Preference number: 6 (lower is better) Translates to: KGKGKILVTSKH*SSSQTQSQYKL Trigger: TAATTTGTACTGACTTTGGGTCTGTGAACTACTTCAATGTTTGGAGGTTACCAAAATCTTACCTTTCCCTTT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000557290.1 |
||