Pregenerated sensors for PSMA1 (Homo sapiens)
Ensembl gene IDs: ENSG00000129084Ensembl transcript IDs: ENST00000396394.7, ENST00000418988.2, ENST00000527632.1, ENST00000528018.1, ENST00000528307.5, ENST00000529524.1, ENST00000530457.5, ENST00000531023.1, ENST00000531156.5, ENST00000532256.1, ENST00000533068.5, ENST00000533331.5
Found 40 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | GTCCCGGTGGGTCTTCGGACTGCCGCCGCCGCGCTTTCCTCGGCCTaGGCACGCTGGGTCGGCGTGGTCCCGGCTCGCGTCCCTGTTGGG | + |
|
Preference number: 5 (lower is better) Translates to: VPVGLRTAAAALSSA*ARWVGVVPARVPVG Trigger: CCCAACAGGGACGCGAGCCGGGACCACGCCGACCCAGCGTGCCCAGGCCGAGGAAAGCGCGGCGGCGGCAGTCCGAAGACCCACCGGGAC 76% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000528018.1 |
||
| CDS GCA 90 bp | CCGGCCAGGCCGGAGATGCTGAATCACTGCCGGAGCCCGGCCGTCTaGCGAGGCTCTCATACCTCGTGGCACCGGGCGACGCATGGTGGC | + |
|
Preference number: 5 (lower is better) Translates to: PARPEMLNHCRSPAV*RGSHTSWHRATHGG Trigger: GCCACCATGCGTCGCCCGGTGCCACGAGGTATGAGAGCCTCGGCAGACGGCCGGGCTCCGGCAGTGATTCAGCATCTCCGGCCTGGCCGG 71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000533068.5 |
||
| CDS GCA 90 bp | CCGGCCAGGCCGGAGATGCTGAATCACTGCCGGAGCCCGGCCGTCTaGCGAGGCTCTCATACCTCGTGGCACCGGGCGACGCTAAGGATG | + |
|
Preference number: 5 (lower is better) Translates to: PARPEMLNHCRSPAV*RGSHTSWHRATLRM Trigger: CATCCTTAGCGTCGCCCGGTGCCACGAGGTATGAGAGCCTCGGCAGACGGCCGGGCTCCGGCAGTGATTCAGCATCTCCGGCCTGGCCGG 69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000530457.5 ENST00000532256.1 |
||
| CDS CCA 90 bp | CCCCTCCCGTCCGAAGATGACCTCGTCCTTCTCTTTCAGTCCCGGTaGGTCTTCGGACTGCCGCCGCCGCGCTTTCCTCGGCCTGGGCAC | + |
|
Preference number: 5 (lower is better) Translates to: PLPSEDDLVLLFQSR*VFGLPPPRFPRPGH Trigger: GTGCCCAGGCCGAGGAAAGCGCGGCGGCGGCAGTCCGAAGACCCACCGGGACTGAAAGAGAAGGACGAGGTCATCTTCGGACGGGAGGGG 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000418988.2 ENST00000528018.1 |
||
| CDS GCA 90 bp | AAGATGACCTCGTCCTTCTCTTTCAGTCCCGGTGGGTCTTCGGACTaGCGCCGCCGCGCTTTCCTCGGCCTGGGCACGCTGGGTCGGCGT | + |
|
Preference number: 5 (lower is better) Translates to: KMTSSFSFSPGGSSD*RRRAFLGLGTLGRR Trigger: ACGCCGACCCAGCGTGCCCAGGCCGAGGAAAGCGCGGCGGCGGCAGTCCGAAGACCCACCGGGACTGAAAGAGAAGGACGAGGTCATCTT 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000418988.2 ENST00000528018.1 |
||
| CDS GCA 90 bp | CTACCGATAACCCCTAGCCCGGCCAGGCCGGAGATGCTGAATCACTaGCGGAGCCCGGCCGTCTGCCGAGGCTCTCATACCTCGTGGCAC | + |
|
Preference number: 5 (lower is better) Translates to: LPITPSPARPEMLNH*RSPAVCRGSHTSWH Trigger: GTGCCACGAGGTATGAGAGCCTCGGCAGACGGCCGGGCTCCGGCAGTGATTCAGCATCTCCGGCCTGGCCGGGCTAGGGGTTATCGGTAG 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000530457.5 ENST00000532256.1 ENST00000533068.5 |
||
| CDS TCA 90 bp | CGCCTGGGGTCCCAGGATGGCTGGCTTGCCCCTCCCGTCCGAAGATaGCCTCGTCCTTCTCTTTCAGTCCCGGTGGGTCTTCGGACTGCC | + |
|
Preference number: 5 (lower is better) Translates to: RLGSQDGWLAPPVRR*PRPSLSVPVGLRTA Trigger: GGCAGTCCGAAGACCCACCGGGACTGAAAGAGAAGGACGAGGTCATCTTCGGACGGGAGGGGCAAGCCAGCCATCCTGGGACCCCAGGCG 66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000418988.2 ENST00000528018.1 |
||
| CDS CCA 90 bp | GTGTCGGAGGCTCCCCGGGAAGCGAAAGCGGTGGAAAGGCCGCACTaGCTACCGATAACCCCTAGCCCGGCCAGGCCGGAGATGCTGAAT | + |
|
Preference number: 5 (lower is better) Translates to: VSEAPREAKAVERPH*LPITPSPARPEMLN Trigger: ATTCAGCATCTCCGGCCTGGCCGGGCTAGGGGTTATCGGTAGCCAGTGCGGCCTTTCCACCGCTTTCGCTTCCCGGGGAGCCTCCGACAC 66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENST00000530457.5 ENST00000532256.1 ENST00000533068.5 |
||
| CDS CCA 90 bp | AATCACTGCCGGAGCCCGGCCGTCTGCCGAGGCTCTCATACCTCGTaGCACCGGGCGACGCTAAGGATGACAGGAGAGGTGGCTCGTCAT | + |
|
Preference number: 5 (lower is better) Translates to: NHCRSPAVCRGSHTS*HRATLRMTGEVARH Trigger: ATGACGAGCCACCTCTCCTGTCATCCTTAGCGTCGCCCGGTGCCACGAGGTATGAGAGCCTCGGCAGACGGCCGGGCTCCGGCAGTGATT 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000530457.5 ENST00000532256.1 |
||
| CDS GCA 90 bp | CCCTCAAAGAGAACCTGCACGCCTGGGGTCCCAGGATGGCTGGCTTaGCCCTCCCGTCCGAAGATGACCTCGTCCTTCTCTTTCAGTCCC | + |
|
Preference number: 5 (lower is better) Translates to: PSKRTCTPGVPGWLA*PSRPKMTSSFSFSP Trigger: GGGACTGAAAGAGAAGGACGAGGTCATCTTCGGACGGGAGGGGCAAGCCAGCCATCCTGGGACCCCAGGCGTGCAGGTTCTCTTTGAGGG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000418988.2 ENST00000528018.1 |
||
| CDS TCA 90 bp | GACGCATGGTGGCGGCGCGGGCCTGGTTGCGGCCTCCAGCAAAACTaGGAATCAAGGAGGTGCTGCCGAAAGTATCGCTCAGCGATCTAC | + |
|
Preference number: 5 (lower is better) Translates to: DAWWRRGPGCGLQQN*ESRRCCRKYRSAIY Trigger: GTAGATCGCTGAGCGATACTTTCGGCAGCACCTCCTTGATTCTCAGTTTTGCTGGAGGCCGCAACCAGGCCCGCGCCGCCACCATGCGTC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000533068.5 |
||
| CDS CCA 90 bp | GGTGGAATACCCTCAAAGAGAACCTGCACGCCTGGGGTCCCAGGATaGCTGGCTTGCCCCTCCCGTCCGAAGATGACCTCGTCCTTCTCT | + |
|
Preference number: 5 (lower is better) Translates to: GGIPSKRTCTPGVPG*LACPSRPKMTSSFS Trigger: AGAGAAGGACGAGGTCATCTTCGGACGGGAGGGGCAAGCCAGCCATCCTGGGACCCCAGGCGTGCAGGTTCTCTTTGAGGGTATTCCACC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000418988.2 ENST00000528018.1 |
||
| CDS TCA 90 bp | GTACCATGGTGGCGGCGCGGGCCTGGTTGCGGCCTCCAGCAAAACTaGGAATCAAGGAGGTGCTGCCGAAAGTATCGCTCAGCGATCTAC | + |
|
Preference number: 5 (lower is better) Translates to: VPWWRRGPGCGLQQN*ESRRCCRKYRSAIY Trigger: GTAGATCGCTGAGCGATACTTTCGGCAGCACCTCCTTGATTCTCAGTTTTGCTGGAGGCCGCAACCAGGCCCGCGCCGCCACCATGGTAC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000532256.1 |
||
| CDS TCA 90 bp | GAAACATGGTGGCGGCGCGGGCCTGGTTGCGGCCTCCAGCAAAACTaGGAATCAAGGAGGTGCTGCCGAAAGTATCGCTCAGCGATCTAC | + |
|
Preference number: 5 (lower is better) Translates to: ETWWRRGPGCGLQQN*ESRRCCRKYRSAIY Trigger: GTAGATCGCTGAGCGATACTTTCGGCAGCACCTCCTTGATTCTCAGTTTTGCTGGAGGCCGCAACCAGGCCCGCGCCGCCACCATGTTTC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000396394.7 |
||
| CDS CCA 90 bp | ATGCTTTTTGCAGGGTGGAATACCCTCAAAGAGAACCTGCACGCCTaGGGTCCCAGGATGGCTGGCTTGCCCCTCCCGTCCGAAGATGAC | + |
|
Preference number: 5 (lower is better) Translates to: MLFAGWNTLKENLHA*GPRMAGLPLPSEDD Trigger: GTCATCTTCGGACGGGAGGGGCAAGCCAGCCATCCTGGGACCCCAGGCGTGCAGGTTCTCTTTGAGGGTATTCCACCCTGCAAAAAGCAT 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000418988.2 ENST00000528018.1 |
||
| CDS CCA 90 bp | CTGGCCTTGCTGAGAGCTGACCATGAATACATGCTTTTTGCAGGGTaGAATACCCTCAAAGAGAACCTGCACGCCTGGGGTCCCAGGATG | + |
|
Preference number: 5 (lower is better) Translates to: LALLRADHEYMLFAG*NTLKENLHAWGPRM Trigger: CATCCTGGGACCCCAGGCGTGCAGGTTCTCTTTGAGGGTATTCCACCCTGCAAAAAGCATGTATTCATGGTCAGCTCTCAGCAAGGCCAG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000418988.2 ENST00000528018.1 |
||
| CDS CCA 90 bp | CATTTAAATTACATCATAACCAGCAATAAGGAGACCAACACCATATaGTCTCCGGCCATATCGTTGTGTTGGTATCTGGGTCTCTTAGAC | + |
|
Preference number: 5 (lower is better) Translates to: HLNYIITSNKETNTI*SPAISLCWYLGLLD Trigger: GTCTAAGAGACCCAGATACCAACACAACGATATGGCCGGAGACCATATGGTGTTGGTCTCCTTATTGCTGGTTATGATGTAATTTAAATG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000528307.5 |
||
| CDS CCA 72 bp | ACTGCCGCCGCCGCGCTTTCCTCGGCCTGGGCACGCTaGGTCGGCGTGGTCCCGGCTCGCGTCCCTGTTGGG | + |
|
Preference number: 6 (lower is better) Translates to: TAAAALSSAWAR*VGVVPARVPVG Trigger: CCCAACAGGGACGCGAGCCGGGACCACGCCGACCCAGCGTGCCCAGGCCGAGGAAAGCGCGGCGGCGGCAGT 76% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000528018.1 |
||
| CDS CCA 72 bp | GGTCTTCGGACTGCCGCCGCCGCGCTTTCCTCGGCCTaGGCACGCTGGGTCGGCGTGGTCCCGGCTCGCGTC | + |
|
Preference number: 6 (lower is better) Translates to: GLRTAAAALSSA*ARWVGVVPARV Trigger: GACGCGAGCCGGGACCACGCCGACCCAGCGTGCCCAGGCCGAGGAAAGCGCGGCGGCGGCAGTCCGAAGACC 76% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000528018.1 |
||
| CDS CCA 72 bp | CGGAGCCCGGCCGTCTGCCGAGGCTCTCATACCTCGTaGCACCGGGCGACGCATGGTGGCGGCGCGGGCCTG | + |
|
Preference number: 6 (lower is better) Translates to: RSPAVCRGSHTS*HRATHGGGAGL Trigger: CAGGCCCGCGCCGCCACCATGCGTCGCCCGGTGCCACGAGGTATGAGAGCCTCGGCAGACGGCCGGGCTCCG 76% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000533068.5 |
||
| CDS GCA 72 bp | CCGGAGATGCTGAATCACTGCCGGAGCCCGGCCGTCTaGCGAGGCTCTCATACCTCGTGGCACCGGGCGACG | + |
|
Preference number: 6 (lower is better) Translates to: PEMLNHCRSPAV*RGSHTSWHRAT Trigger: CGTCGCCCGGTGCCACGAGGTATGAGAGCCTCGGCAGACGGCCGGGCTCCGGCAGTGATTCAGCATCTCCGG 69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000530457.5 ENST00000532256.1 ENST00000533068.5 |
||
| CDS GCA 72 bp | ACCCCTAGCCCGGCCAGGCCGGAGATGCTGAATCACTaGCGGAGCCCGGCCGTCTGCCGAGGCTCTCATACC | + |
|
Preference number: 6 (lower is better) Translates to: TPSPARPEMLNH*RSPAVCRGSHT Trigger: GGTATGAGAGCCTCGGCAGACGGCCGGGCTCCGGCAGTGATTCAGCATCTCCGGCCTGGCCGGGCTAGGGGT 69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000530457.5 ENST00000532256.1 ENST00000533068.5 |
||
| CDS CCA 72 bp | GCTCCCCGGGAAGCGAAAGCGGTGGAAAGGCCGCACTaGCTACCGATAACCCCTAGCCCGGCCAGGCCGGAG | + |
|
Preference number: 6 (lower is better) Translates to: APREAKAVERPH*LPITPSPARPE Trigger: CTCCGGCCTGGCCGGGCTAGGGGTTATCGGTAGCCAGTGCGGCCTTTCCACCGCTTTCGCTTCCCGGGGAGC 69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENST00000530457.5 ENST00000532256.1 ENST00000533068.5 |
||
| CDS GCA 72 bp | TCGTCCTTCTCTTTCAGTCCCGGTGGGTCTTCGGACTaGCGCCGCCGCGCTTTCCTCGGCCTGGGCACGCTG | + |
|
Preference number: 6 (lower is better) Translates to: SSFSFSPGGSSD*RRRAFLGLGTL Trigger: CAGCGTGCCCAGGCCGAGGAAAGCGCGGCGGCGGCAGTCCGAAGACCCACCGGGACTGAAAGAGAAGGACGA 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000418988.2 ENST00000528018.1 |
||
| CDS CCA 72 bp | CGGAGCCCGGCCGTCTGCCGAGGCTCTCATACCTCGTaGCACCGGGCGACGCTAAGGATGACAGGAGAGGTG | + |
|
Preference number: 6 (lower is better) Translates to: RSPAVCRGSHTS*HRATLRMTGEV Trigger: CACCTCTCCTGTCATCCTTAGCGTCGCCCGGTGCCACGAGGTATGAGAGCCTCGGCAGACGGCCGGGCTCCG 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000530457.5 ENST00000532256.1 |
||
| CDS CCA 72 bp | CCCTCAAAGAGAACCTGCACGCCTGGGGTCCCAGGATaGCTGGCTTGCCCCTCCCGTCCGAAGATGACCTCG | + |
|
Preference number: 6 (lower is better) Translates to: PSKRTCTPGVPG*LACPSRPKMTS Trigger: CGAGGTCATCTTCGGACGGGAGGGGCAAGCCAGCCATCCTGGGACCCCAGGCGTGCAGGTTCTCTTTGAGGG 65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000418988.2 ENST00000528018.1 |
||
| CDS CAA 90 bp | ACCCTCAAAGAGAACCTGCACGCCTGGGGTCCCAGGATGGCTGGCTaGCCCCTCCCGTCCGAAGATGACCTCGTCCTTCTCTTTCAGTCC | + |
|
Preference number: 6 (lower is better) Translates to: TLKENLHAWGPRMAG*PLPSEDDLVLLFQS Trigger: GGACTGAAAGAGAAGGACGAGGTCATCTTCGGACGGGAGGGGCAAGCCAGCCATCCTGGGACCCCAGGCGTGCAGGTTCTCTTTGAGGGT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000418988.2 ENST00000528018.1 |
||
| CDS TCA 72 bp | TGGCGGCGCGGGCCTGGTTGCGGCCTCCAGCAAAACTaGGAATCAAGGAGGTGCTGCCGAAAGTATCGCTCA | + |
|
Preference number: 6 (lower is better) Translates to: WRRGPGCGLQQN*ESRRCCRKYRS Trigger: TGAGCGATACTTTCGGCAGCACCTCCTTGATTCTCAGTTTTGCTGGAGGCCGCAACCAGGCCCGCGCCGCCA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENST00000396394.7 ENST00000532256.1 ENST00000533068.5 ENST00000533331.5 |
||
| CDS TCA 72 bp | TCCCAGGATGGCTGGCTTGCCCCTCCCGTCCGAAGATaGCCTCGTCCTTCTCTTTCAGTCCCGGTGGGTCTT | + |
|
Preference number: 6 (lower is better) Translates to: SQDGWLAPPVRR*PRPSLSVPVGL Trigger: AAGACCCACCGGGACTGAAAGAGAAGGACGAGGTCATCTTCGGACGGGAGGGGCAAGCCAGCCATCCTGGGA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000418988.2 ENST00000528018.1 |
||
| CDS GCA 72 bp | TGCTTTTTGCAGGGTGGAATACCCTCAAAGAGAACCTaGACGCCTGGGGTCCCAGGATGGCTGGCTTGCCCC | + |
|
Preference number: 6 (lower is better) Translates to: CFLQGGIPSKRT*TPGVPGWLACP Trigger: GGGGCAAGCCAGCCATCCTGGGACCCCAGGCGTGCAGGTTCTCTTTGAGGGTATTCCACCCTGCAAAAAGCA 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000418988.2 ENST00000528018.1 |
||
| CDS CAA 72 bp | TATCGCTCAGCGATCTACAGAGAAGTCTGCGGGAGTTaGACGGCGGCGGCGCAGGGTAGCGCAGTCTATTCC | + |
|
Preference number: 6 (lower is better) Translates to: YRSAIYREVCGS*TAAAQGSAVYS Trigger: GGAATAGACTGCGCTACCCTGCGCCGCCGCCGTCAAACTCCCGCAGACTTCTCTGTAGATCGCTGAGCGATA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000533068.5 |
||
| CDS GCA 72 bp | GAGAGGTGGCTCGTCATCCCCCAGTCACCAGAGCTCTaGCCTAAACCTTCCAGAGATCGGGATTCAACGTAC | + |
|
Preference number: 6 (lower is better) Translates to: ERWLVIPQSPEL*PKPSRDRDSTY Trigger: GTACGTTGAATCCCGATCTCTGGAAGGTTTAGGGCAGAGCTCTGGTGACTGGGGGATGACGAGCCACCTCTC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENST00000530457.5 ENST00000531156.5 ENST00000532256.1 |
||
| CDS TCA 72 bp | GGGCCAAGGCCTTTACCACTCTGCTACTGGCCTTGCTaGGAGCTGACCATGAATACATGCTTTTTGCAGGGT | + |
|
Preference number: 6 (lower is better) Translates to: GPRPLPLCYWPC*ELTMNTCFLQG Trigger: ACCCTGCAAAAAGCATGTATTCATGGTCAGCTCTCAGCAAGGCCAGTAGCAGAGTGGTAAAGGCCTTGGCCC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000418988.2 ENST00000528018.1 |
||
| CDS CAA 72 bp | GGTCTGGATTTGACTTGTCATTGTCTTTTCCCAGCCTaGGAGGGCCAAGGCCTTTACCACTCTGCTACTGGC | + |
|
Preference number: 6 (lower is better) Translates to: GLDLTCHCLFPA*EGQGLYHSATG Trigger: GCCAGTAGCAGAGTGGTAAAGGCCTTGGCCCTCCAAGGCTGGGAAAAGACAATGACAAGTCAAATCCAGACC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000418988.2 ENST00000528018.1 |
||
| CDS CAA 90 bp | TACAACATAGGTCTGGATTTGACTTGTCATTGTCTTTTCCCAGCCTaGGAGGGCCAAGGCCTTTACCACTCTGCTACTGGCCTTGCTGAG | + |
|
Preference number: 6 (lower is better) Translates to: YNIGLDLTCHCLFPA*EGQGLYHSATGLAE Trigger: CTCAGCAAGGCCAGTAGCAGAGTGGTAAAGGCCTTGGCCCTCCAAGGCTGGGAAAAGACAATGACAAGTCAAATCCAGACCTATGTTGTA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000418988.2 ENST00000528018.1 |
||
| CDS CAA 90 bp | AGGAGACAGTCACCTAGTAGACCAACATACAACATAGGTCTGGATTaGACTTGTCATTGTCTTTTCCCAGCCTTGGAGGGCCAAGGCCTT | + |
|
Preference number: 6 (lower is better) Translates to: RRQSPSRPTYNIGLD*TCHCLFPALEGQGL Trigger: AAGGCCTTGGCCCTCCAAGGCTGGGAAAAGACAATGACAAGTCAAATCCAGACCTATGTTGTATGTTGGTCTACTAGGTGACTGTCTCCT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000418988.2 ENST00000528018.1 |
||
| CDS CCA 72 bp | ATCATCATAACCAGCAATAAGGAGACCAACACCATATaGTCTCCGGCCATATCGTTGTGTTGGTATCTGGGT | + |
|
Preference number: 6 (lower is better) Translates to: IIITSNKETNTI*SPAISLCWYLG Trigger: ACCCAGATACCAACACAACGATATGGCCGGAGACCATATGGTGTTGGTCTCCTTATTGCTGGTTATGATGAT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENST00000396394.7 ENST00000418988.2 ENST00000529524.1 ENST00000530457.5 ENST00000531023.1 |
||
| CDS CCA 72 bp | TACATCATAACCAGCAATAAGGAGACCAACACCATATaGTCTCCGGCCATATCGTTGTGTTGGTATCTGGGT | + |
|
Preference number: 6 (lower is better) Translates to: YIITSNKETNTI*SPAISLCWYLG Trigger: ACCCAGATACCAACACAACGATATGGCCGGAGACCATATGGTGTTGGTCTCCTTATTGCTGGTTATGATGTA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000527632.1 ENST00000528307.5 |
||
| CDS CAA 72 bp | ACCAACATACAACATAGGTCTGGATTTGACTTGTCATaGTCTTTTCCCAGCCTTGGAGGGCCAAGGCCTTTA | + |
|
Preference number: 6 (lower is better) Translates to: TNIQHRSGFDLS*SFPSLGGPRPL Trigger: TAAAGGCCTTGGCCCTCCAAGGCTGGGAAAAGACAATGACAAGTCAAATCCAGACCTATGTTGTATGTTGGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000418988.2 ENST00000528018.1 |
||
| CDS CAA 72 bp | TCACCTAGTAGACCAACATACAACATAGGTCTGGATTaGACTTGTCATTGTCTTTTCCCAGCCTTGGAGGGC | + |
|
Preference number: 6 (lower is better) Translates to: SPSRPTYNIGLD*TCHCLFPALEG Trigger: GCCCTCCAAGGCTGGGAAAAGACAATGACAAGTCAAATCCAGACCTATGTTGTATGTTGGTCTACTAGGTGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000418988.2 ENST00000528018.1 |
||