Pregenerated sensors for PSIP1 (Homo sapiens)
Ensembl gene IDs: ENSG00000164985Ensembl transcript IDs: ENST00000380715.5, ENST00000380716.8, ENST00000380733.9, ENST00000380738.8, ENST00000463712.6, ENST00000484265.1, ENST00000488797.1
Found 17 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | CTCGGGGCGTCCCGACGCGCCTGCCGGGGCCGCGGGCGCCGACGCTaGGGTTGCTGGCCGGTCGCCTCTACCCGCGTCCACGCAAGCCAC | + |
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Preference number: 5 (lower is better) Translates to: LGASRRACRGRGRRR*GCWPVASTRVHASH Trigger: GTGGCTTGCGTGGACGCGGGTAGAGGCGACCGGCCAGCAACCGCAGCGTCGGCGCCCGCGGCCCCGGCAGGCGCGTCGGGACGCCCCGAG 80% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENST00000380715.5 ENST00000380716.8 ENST00000380738.8 ENST00000488797.1 |
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| CDS GCA 90 bp | GGGGCGTCCCGACGCGCCTGCTGCCGGGGCCGCGGGCGCCGACGCTaGGGTTGCTGGCCGGTCGCCTCTACCCGCGTCCACGCAAGCCAC | + |
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Preference number: 5 (lower is better) Translates to: GASRRACCRGRGRRR*GCWPVASTRVHASH Trigger: GTGGCTTGCGTGGACGCGGGTAGAGGCGACCGGCCAGCAACCGCAGCGTCGGCGCCCGCGGCCCCGGCAGCAGGCGCGTCGGGACGCCCC 80% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENST00000380733.9 ENST00000463712.6 ENST00000484265.1 |
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| CDS GCA 90 bp | TCCCGACGCGCCTGCTGCCGGGGCCGCGGGCGCCGACGCTGCGGTTaGTGGCCGGTCGCCTCTACCCGCGTCCACGCAAGCCACCTGCGC | + |
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Preference number: 5 (lower is better) Translates to: SRRACCRGRGRRRCG*WPVASTRVHASHLR Trigger: GCGCAGGTGGCTTGCGTGGACGCGGGTAGAGGCGACCGGCCAGCAACCGCAGCGTCGGCGCCCGCGGCCCCGGCAGCAGGCGCGTCGGGA 79% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000380733.9 ENST00000463712.6 ENST00000484265.1 |
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| CDS CCA 90 bp | CGACGCGCCTGCTGCCGGGGCCGCGGGCGCCGACGCTGCGGTTGCTaGCCGGTCGCCTCTACCCGCGTCCACGCAAGCCACCTGCGCCAC | + |
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Preference number: 5 (lower is better) Translates to: RRACCRGRGRRRCGC*PVASTRVHASHLRH Trigger: GTGGCGCAGGTGGCTTGCGTGGACGCGGGTAGAGGCGACCGGCCAGCAACCGCAGCGTCGGCGCCCGCGGCCCCGGCAGCAGGCGCGTCG 79% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000380733.9 ENST00000463712.6 ENST00000484265.1 |
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| CDS GCA 90 bp | CCGCAGAGGCGTCTCAACGGCTCGGAATCGCAACCGCGCCGCCGCTaGCGCCGCCGTAGCTGCGCTGCTCCCGCGCGGCTCCCGCTCGGC | + |
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Preference number: 5 (lower is better) Translates to: PQRRLNGSESQPRRR*RRRSCAAPARLPLG Trigger: GCCGAGCGGGAGCCGCGCGGGAGCAGCGCAGCTACGGCGGCGGCAGCGGCGGCGCGGTTGCGATTCCGAGCCGTTGAGACGCCTCTGCGG 78% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000380715.5 ENST00000380716.8 ENST00000380738.8 ENST00000488797.1 |
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| CDS GCA 90 bp | CGGTCGCCTCTACCCGCGTCCACGCAAGCCACCTGCGCCACCAGCTaGCGCAGAGGCGTCTCAACGGCTCGGAATCGCAACCGCGCCGCC | + |
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Preference number: 5 (lower is better) Translates to: RSPLPASTQATCATS*RRGVSTARNRNRAA Trigger: GGCGGCGCGGTTGCGATTCCGAGCCGTTGAGACGCCTCTGCGGCAGCTGGTGGCGCAGGTGGCTTGCGTGGACGCGGGTAGAGGCGACCG 72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 7 transcripts: ENST00000380715.5 ENST00000380716.8 ENST00000380733.9 ENST00000380738.8 ENST00000463712.6 ENST00000484265.1 ENST00000488797.1 |
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| CDS GCA 90 bp | GCGGTTGCTGGCCGGTCGCCTCTACCCGCGTCCACGCAAGCCACCTaGGCCACCAGCTGCCGCAGAGGCGTCTCAACGGCTCGGAATCGC | + |
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Preference number: 5 (lower is better) Translates to: AVAGRSPLPASTQAT*ATSCRRGVSTARNR Trigger: GCGATTCCGAGCCGTTGAGACGCCTCTGCGGCAGCTGGTGGCGCAGGTGGCTTGCGTGGACGCGGGTAGAGGCGACCGGCCAGCAACCGC 71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 7 transcripts: ENST00000380715.5 ENST00000380716.8 ENST00000380733.9 ENST00000380738.8 ENST00000463712.6 ENST00000484265.1 ENST00000488797.1 |
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| CDS CCA 90 bp | ACCTCCATCATTCAATTACCTCCACCTGGTTCCGCCCTTAACACCTaGGGATTATTAGAATTCAAGGTGAGATTTGTGAGGGGACACAGA | + |
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Preference number: 5 (lower is better) Translates to: TSIIQLPPPGSALNT*GLLEFKVRFVRGHR Trigger: TCTGTGTCCCCTCACAAATCTCACCTTGAATTCTAATAATCCCCAGGTGTTAAGGGCGGAACCAGGTGGAGGTAATTGAATGATGGAGGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000488797.1 |
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| CDS CAA 90 bp | GTCCCGACGCGCCTGCTGCCGGGGCCGCGGGCGCCGACGCTGCGGTaGCTGGCCGGTCGCCTCTACCCGCGTCCACGCAAGCCACCTGCG | + |
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Preference number: 6 (lower is better) Translates to: VPTRLLPGPRAPTLR*LAGRLYPRPRKPPA Trigger: CGCAGGTGGCTTGCGTGGACGCGGGTAGAGGCGACCGGCCAGCAACCGCAGCGTCGGCGCCCGCGGCCCCGGCAGCAGGCGCGTCGGGAC 79% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000380733.9 ENST00000463712.6 ENST00000484265.1 |
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| CDS CAA 72 bp | ACGCGCCTGCCGGGGCCGCGGGCGCCGACGCTGCGGTaGCTGGCCGGTCGCCTCTACCCGCGTCCACGCAAG | + |
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Preference number: 6 (lower is better) Translates to: TRLPGPRAPTLR*LAGRLYPRPRK Trigger: CTTGCGTGGACGCGGGTAGAGGCGACCGGCCAGCAACCGCAGCGTCGGCGCCCGCGGCCCCGGCAGGCGCGT 79% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENST00000380715.5 ENST00000380716.8 ENST00000380738.8 ENST00000488797.1 |
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| CDS GCA 72 bp | CTACCCGCGTCCACGCAAGCCACCTGCGCCACCAGCTaGCGCAGAGGCGTCTCAACGGCTCGGAATCGCAAC | + |
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Preference number: 6 (lower is better) Translates to: LPASTQATCATS*RRGVSTARNRN Trigger: GTTGCGATTCCGAGCCGTTGAGACGCCTCTGCGGCAGCTGGTGGCGCAGGTGGCTTGCGTGGACGCGGGTAG 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 7 transcripts: ENST00000380715.5 ENST00000380716.8 ENST00000380733.9 ENST00000380738.8 ENST00000463712.6 ENST00000484265.1 ENST00000488797.1 |
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| CDS GCA 72 bp | TCGTGCTGGCTTCATGGTTGTCTTTGCTGTCTTCATTaGTCTCCCCGTTATGTTGTGGCTGATTACCATCTT | + |
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Preference number: 6 (lower is better) Translates to: SCWLHGCLCCLH*SPRYVVADYHL Trigger: AAGATGGTAATCAGCCACAACATAACGGGGAGAGCAATGAAGACAGCAAAGACAACCATGAAGCCAGCACGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000380733.9 ENST00000380738.8 |
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| CDS CCA 72 bp | ATTCAATTACCTCCACCTGGTTCCGCCCTTAACACCTaGGGATTATTAGAATTCAAGGTGAGATTTGTGAGG | + |
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Preference number: 6 (lower is better) Translates to: IQLPPPGSALNT*GLLEFKVRFVR Trigger: CCTCACAAATCTCACCTTGAATTCTAATAATCCCCAGGTGTTAAGGGCGGAACCAGGTGGAGGTAATTGAAT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000488797.1 |
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| CDS CAA 72 bp | GAAATTAACGGTAGCCTCCTGAGTGATCCCATGCACTaGGCAGTAACATACGTCAACATTCAGCTGCAATTT | + |
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Preference number: 6 (lower is better) Translates to: EINGSLLSDPMH*AVTYVNIQLQF Trigger: AAATTGCAGCTGAATGTTGACGTATGTTACTGCCAAGTGCATGGGATCACTCAGGAGGCTACCGTTAATTTC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000484265.1 |
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| CDS CAA 90 bp | ATTCTTCGGGAAATTAACGGTAGCCTCCTGAGTGATCCCATGCACTaGGCAGTAACATACGTCAACATTCAGCTGCAATTTTTGAAAAAT | + |
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Preference number: 6 (lower is better) Translates to: ILREINGSLLSDPMH*AVTYVNIQLQFLKN Trigger: ATTTTTCAAAAATTGCAGCTGAATGTTGACGTATGTTACTGCCAAGTGCATGGGATCACTCAGGAGGCTACCGTTAATTTCCCGAAGAAT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENST00000484265.1 |
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| CDS CCA 72 bp | GTCTATACAGACAGTAGACTAGTGGTTGTTTACGGTTaGAGAGGGGAAAGTGATCATCAAAAGGTTATGATA | + |
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Preference number: 6 (lower is better) Translates to: VYTDSRLVVVYG*RGESDHQKVMI Trigger: TATCATAACCTTTTGATGATCACTTTCCCCTCTCCAACCGTAAACAACCACTAGTCTACTGTCTGTATAGAC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000484265.1 |
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| CDS TCA 72 bp | TTTATTTTGCATAATGCATTTCACACAAGCTGCATCTaGAATGCTTTACAGAGCAAAATGCTCAGTTTCCAT | + |
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Preference number: 6 (lower is better) Translates to: FILHNAFHTSCI*NALQSKMLSFH Trigger: ATGGAAACTGAGCATTTTGCTCTGTAAAGCATTTCAGATGCAGCTTGTGTGAAATGCATTATGCAAAATAAA 35% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000380715.5 |
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