Pregenerated sensors for PSG6 (Homo sapiens)
Ensembl gene IDs: ENSG00000170848Ensembl transcript IDs: ENST00000187910.7, ENST00000402603.8, ENST00000599753.1
Found 4 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR CCA 90 bp | AATAGTTTCCCAATTCTGGGGCACTCAGATAGAGAGCAAAAGCAAATGTTTCAATCTGTCTGGTTTCCATaGCAGGGACCAGAGACTTTG | + |
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Preference number: 2 (lower is better) Translates to: NSFPILGHSDREQKQMFQSVWFP*QGPETL Trigger: CAAAGTCTCTGGTCCCTGCCATGGAAACCAGACAGA...TTGAAACATTTGCTTTTGCTCTCTATCTGAGTGCCCCAGAATTGGGAAACTATT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000599753.1 |
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| 3UTR-3UTR CCA 90 bp | AATAGTTTCCCAATTCTGGGGCACTCAGATAGAGAGCAAAAGCAAATGTTTCAAAATTCTGGGGAGGTCTaGACCATAGAGGACATTCAG | + |
|
Preference number: 2 (lower is better) Translates to: NSFPILGHSDREQKQMFQNSGEV*TIEDIQ Trigger: CTGAATGTCCTCTATGGTCCAGACCTCCCCAGAATT...TTGAAACATTTGCTTTTGCTCTCTATCTGAGTGCCCCAGAATTGGGAAACTATT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENST00000599753.1 |
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| 3UTR-3UTR CCA 90 bp | AATAGTTTCCCAATTCTGGGGCACTCAGATAGAGAGCAAAAGCAAATGTTTCAATCAGTGTCTCTATTGTaGCAGCCATTAATGAGACTC | + |
|
Preference number: 2 (lower is better) Translates to: NSFPILGHSDREQKQMFQSVSLL*QPLMRL Trigger: GAGTCTCATTAATGGCTGCCACAATAGAGACACTGA...TTGAAACATTTGCTTTTGCTCTCTATCTGAGTGCCCCAGAATTGGGAAACTATT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000599753.1 |
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| CDS-3UTR TCA 90 bp | AATAGTTTCCCAATTCTGGGGCACTCAGATAGAGAGCAAAAGCAAATGTTTCAAGATCCAGAGACTTCCTaGGCAGGGCTGTCAGGTGTG | + |
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Preference number: 4 (lower is better) Translates to: NSFPILGHSDREQKQMFQDPETS*AGLSGV Trigger: CACACCTGACAGCCCTGCTCAGGAAGTCTCTGGATC...TTGAAACATTTGCTTTTGCTCTCTATCTGAGTGCCCCAGAATTGGGAAACTATT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000187910.7 ENST00000402603.8 |
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