Pregenerated sensors for PSG3 (Homo sapiens)
Ensembl gene IDs: ENSG00000221826Ensembl transcript IDs: ENST00000327495.10, ENST00000490592.1, ENST00000594378.1, ENST00000595140.5
Found 10 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR TCA 90 bp | AATAGTTTCCCAATTCTGGGGCACTTAGGGAGCAAAAGCAAATGTTTCAATTTTTACTTTGAGGAAGAATaGAAGCAACTGTCTGCCAGT | + |
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Preference number: 2 (lower is better) Translates to: NSFPILGHLGSKSKCFNFYFEEE*KQLSAS Trigger: ACTGGCAGACAGTTGCTTTCATTCTTCCTCAAAGTA...AAAATTGAAACATTTGCTTTTGCTCCCTAAGTGCCCCAGAATTGGGAAACTATT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENST00000327495.10 ENST00000594378.1 |
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| 3UTR-3UTR CCA 90 bp | AATAGTTTCCCAATTCTGGGGCACTTAGGGAGCAAAAGCAAATGTTTCAATTTTAAGTTCTTAGTCCAGTaGTATGATCTTGAAGTTATC | + |
|
Preference number: 2 (lower is better) Translates to: NSFPILGHLGSKSKCFNFKFLVQ*YDLEVI Trigger: GATAACTTCAAGATCATACCACTGGACTAAGAACTT...AAAATTGAAACATTTGCTTTTGCTCCCTAAGTGCCCCAGAATTGGGAAACTATT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENST00000327495.10 ENST00000594378.1 |
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| 3UTR-3UTR CAA 90 bp | AATAGTTTCCCAATTCTGGGGCACTTAGGGAGCAAAAGCAAATGTTTCAATTTTCTTGGGAGTCTCCACTaGTGGTCCTCACTTGGAGCA | + |
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Preference number: 3 (lower is better) Translates to: NSFPILGHLGSKSKCFNFLGSLH*WSSLGA Trigger: TGCTCCAAGTGAGGACCACAAGTGGAGACTCCCAAG...AAAATTGAAACATTTGCTTTTGCTCCCTAAGTGCCCCAGAATTGGGAAACTATT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENST00000594378.1 |
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| 3UTR-3UTR CAA 90 bp | AATAGTTTCCCAATTCTGGGGCACTTAGGGAGCAAAAGCAAATGTTTCAATTTTCTGATGGTAAATACTTaGAGGAAGAATGAAAGCAAC | + |
|
Preference number: 3 (lower is better) Translates to: NSFPILGHLGSKSKCFNFLMVNT*RKNESN Trigger: GTTGCTTTCATTCTTCCTCAAAGTATTTACCATCAG...AAAATTGAAACATTTGCTTTTGCTCCCTAAGTGCCCCAGAATTGGGAAACTATT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENST00000327495.10 ENST00000594378.1 |
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| CDS-3UTR TCA 90 bp | AATAGTTTCCCAATTCTGGGGCACTTAGGGAGCAAAAGCAAATGTTTCAATTTTTTAAAAGTAATGCTGTaGGCAGGAGCCCCTTCCAGG | + |
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Preference number: 4 (lower is better) Translates to: NSFPILGHLGSKSKCFNFLKVML*AGAPSR Trigger: CCTGGAAGGGGCTCCTGCTCACAGCATTACTTTTAA...AAAATTGAAACATTTGCTTTTGCTCCCTAAGTGCCCCAGAATTGGGAAACTATT 42% GC, longest homopolymer 6 nt, total homopolymer stretches 22 nt. Matches the following 1 transcripts: ENST00000327495.10 |
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| CDS-3UTR TCA 90 bp | AATAGTTTCCCAATTCTGGGGCACTTAGGGAGCAAAAGCAAATGTTTCAATTTTAAGATGTCCTGTTCCTaGAGGAGCAGAGACTTTGAC | + |
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Preference number: 4 (lower is better) Translates to: NSFPILGHLGSKSKCFNFKMSCS*RSRDFD Trigger: GTCAAAGTCTCTGCTCCTTCAGGAACAGGACATCTT...AAAATTGAAACATTTGCTTTTGCTCCCTAAGTGCCCCAGAATTGGGAAACTATT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENST00000327495.10 ENST00000594378.1 |
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| CDS CAA 72 bp | GTAGTTTCCAGGAGCTGGGATCAGGGGAATAGGGCGTaGTTCTGTGGGTGTGCGGTTTCAGTTATGCAGGAT | + |
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Preference number: 6 (lower is better) Translates to: VVSRSWDQGNRA*FCGCAVSVMQD Trigger: ATCCTGCATAACTGAAACCGCACACCCACAGAACAACGCCCTATTCCCCTGATCCCAGCTCCTGGAAACTAC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000490592.1 |
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| CDS TCA 72 bp | GTTGTTCTGTGGGTGTGCGGTTTCAGTTATGCAGGATaGGGAGGTTCTAGAGATCTCCTGTACAGCTTCATG | + |
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Preference number: 6 (lower is better) Translates to: VVLWVCGFSYAG*GGSRDLLYSFM Trigger: CATGAAGCTGTACAGGAGATCTCTAGAACCTCCTCATCCTGCATAACTGAAACCGCACACCCACAGAACAAC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000490592.1 |
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| CDS CCA 72 bp | AGTGAATCAGAGTGTAGAATAGTAGTTTCCAGGAGCTaGGATCAGGGGAATAGGGCGTTGTTCTGTGGGTGT | + |
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Preference number: 6 (lower is better) Translates to: SESECRIVVSRS*DQGNRALFCGC Trigger: ACACCCACAGAACAACGCCCTATTCCCCTGATCCCAGCTCCTGGAAACTACTATTCTACACTCTGATTCACT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000490592.1 |
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| CDS TCA 72 bp | TGGACTGTAGCTGATGGTAAATACTTTGAGGAAGAATaGAAGCAACTGTCAGAGACTTTGACTGTCATGGAT | + |
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Preference number: 6 (lower is better) Translates to: WTVADGKYFEEE*KQLSETLTVMD Trigger: ATCCATGACAGTCAAAGTCTCTGACAGTTGCTTTCATTCTTCCTCAAAGTATTTACCATCAGCTACAGTCCA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000595140.5 |
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