RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for PRR16 (Homo sapiens)

Ensembl gene IDs: ENSG00000184838

Ensembl transcript IDs: ENST00000379551.2, ENST00000407149.7, ENST00000446965.2, ENST00000505123.5, ENST00000509923.1

Found 183 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR-3UTR TCA 90 bp CAATGTGCTGCATACTTACCAGGTGATTTTTATGCCACTTTGCTGAATGCAGGAGGGCTTTTTATTGCTTaGGTAGAAAGTGCTCATTAC +
Preference number: 2 (lower is better)
Translates to: QCAAYLPGDFYATLLNAGGLFIA*VESAHY
Trigger: GTAATGAGCACTTTCTACTCAAGCAATAAAAAGCCC...TCCTGCATTCAGCAAAGTGGCATAAAAATCACCTGGTAAGTATGCAGCACATTG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENST00000379551.2
ENST00000407149.7
ENST00000446965.2
ENST00000505123.5
3UTR-3UTR TCA 90 bp GCATACTTACCAGGTGATTTTTATGCCACTTTGCTGAATGCAGGATTAATATATGGGCTTTTTATTGCTTaGGTAGAAAGTGCTCATTAC +
Preference number: 2 (lower is better)
Translates to: AYLPGDFYATLLNAGLIYGLFIA*VESAHY
Trigger: GTAATGAGCACTTTCTACTCAAGCAATAAAAAGCCC...ATATATTAATCCTGCATTCAGCAAAGTGGCATAAAAATCACCTGGTAAGTATGC
37% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENST00000379551.2
ENST00000407149.7
ENST00000446965.2
ENST00000505123.5
3UTR-3UTR CAA 90 bp CAATGTGCTGCATACTTACCAGGTGATTTTTATGCCACTTTGCTGAATGCAGGATGGGCTTTTTATTGCTaGAGTAGAAAGTGCTCATTA +
Preference number: 3 (lower is better)
Translates to: QCAAYLPGDFYATLLNAGWAFYC*SRKCSL
Trigger: TAATGAGCACTTTCTACTCAAGCAATAAAAAGCCCA...TCCTGCATTCAGCAAAGTGGCATAAAAATCACCTGGTAAGTATGCAGCACATTG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENST00000379551.2
ENST00000407149.7
ENST00000446965.2
ENST00000505123.5
CDS-3UTR TCA 90 bp CAATGTGCTGCATACTTACCAGGTGATTTTTATGCCACTTTGCTGAATGCAGGAGGCGTAGTGGCGCACTaGGGCAGGCTGAGGCAGGAG +
Preference number: 4 (lower is better)
Translates to: QCAAYLPGDFYATLLNAGGVVAH*GRLRQE
Trigger: CTCCTGCCTCAGCCTGCCTCAGTGCGCCACTACGCC...TCCTGCATTCAGCAAAGTGGCATAAAAATCACCTGGTAAGTATGCAGCACATTG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000379551.2
CDS-3UTR CCA 90 bp CAATGTGCTGCATACTTACCAGGTGATTTTTATGCCACTTTGCTGAATGCAGGACGGCGGTCCCTCGGCTaGACAGGACGAGGAGGGGTT +
Preference number: 4 (lower is better)
Translates to: QCAAYLPGDFYATLLNAGRRSLG*TGRGGV
Trigger: AACCCCTCCTCGTCCTGTCCAGCCGAGGGACCGCCG...TCCTGCATTCAGCAAAGTGGCATAAAAATCACCTGGTAAGTATGCAGCACATTG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000379551.2
ENST00000407149.7
CDS-3UTR GCA 90 bp CAATGTGCTGCATACTTACCAGGTGATTTTTATGCCACTTTGCTGAATGCAGGACTTGGTTTTGGAGGCTaGCGGCGGTCCCTCGGCTGG +
Preference number: 4 (lower is better)
Translates to: QCAAYLPGDFYATLLNAGLGFGG*RRSLGW
Trigger: CCAGCCGAGGGACCGCCGGCAGCCTCCAAAACCAAG...TCCTGCATTCAGCAAAGTGGCATAAAAATCACCTGGTAAGTATGCAGCACATTG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000379551.2
ENST00000407149.7
CDS-3UTR CCA 90 bp TTACCAGGTGATTTTTATGCCACTTTGCTGAATGCAGGATTAATATATTTGGGCATCTTGGGCGCTCCCTaGGCAGCGGCGAGTGGCTGC +
Preference number: 4 (lower is better)
Translates to: LPGDFYATLLNAGLIYLGILGAP*AAASGC
Trigger: GCAGCCACTCGCCGCTGCCCAGGGAGCGCCCAAGAT...GCCCAAATATATTAATCCTGCATTCAGCAAAGTGGCATAAAAATCACCTGGTAA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000379551.2
ENST00000407149.7
CDS-3UTR CCA 90 bp CAATGTGCTGCATACTTACCAGGTGATTTTTATGCCACTTTGCTGAATGCAGGACCTTCACCTTGGTTTTaGAGGCTGCCGGCGGTCCCT +
Preference number: 4 (lower is better)
Translates to: QCAAYLPGDFYATLLNAGPSPWF*RLPAVP
Trigger: AGGGACCGCCGGCAGCCTCCAAAACCAAGGTGAAGG...TCCTGCATTCAGCAAAGTGGCATAAAAATCACCTGGTAAGTATGCAGCACATTG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000379551.2
ENST00000407149.7
CDS-3UTR TCA 90 bp CAATGTGCTGCATACTTACCAGGTGATTTTTATGCCACTTTGCTGAATGCAGGACCCCTTGGACTTGGCTaGCATTCTTTGGGGGCAAGC +
Preference number: 4 (lower is better)
Translates to: QCAAYLPGDFYATLLNAGPLGLG*HSLGAS
Trigger: GCTTGCCCCCAAAGAATGTCAGCCAAGTCCAAGGGG...TCCTGCATTCAGCAAAGTGGCATAAAAATCACCTGGTAAGTATGCAGCACATTG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENST00000379551.2
ENST00000407149.7
CDS-3UTR GCA 90 bp TTACCAGGTGATTTTTATGCCACTTTGCTGAATGCAGGATTAATATATTTGGGCCTTGGTTTTGGAGGCTaGCGGCGGTCCCTCGGCTGG +
Preference number: 4 (lower is better)
Translates to: LPGDFYATLLNAGLIYLGLGFGG*RRSLGW
Trigger: CCAGCCGAGGGACCGCCGGCAGCCTCCAAAACCAAG...GCCCAAATATATTAATCCTGCATTCAGCAAAGTGGCATAAAAATCACCTGGTAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000379551.2
ENST00000407149.7
CDS-3UTR CCA 90 bp GCATACTTACCAGGTGATTTTTATGCCACTTTGCTGAATGCAGGATTAATATATATCTTGGGCGCTCCCTaGGCAGCGGCGAGTGGCTGC +
Preference number: 4 (lower is better)
Translates to: AYLPGDFYATLLNAGLIYILGAP*AAASGC
Trigger: GCAGCCACTCGCCGCTGCCCAGGGAGCGCCCAAGAT...ATATATTAATCCTGCATTCAGCAAAGTGGCATAAAAATCACCTGGTAAGTATGC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000379551.2
ENST00000407149.7
CDS-3UTR CCA 90 bp GCATACTTACCAGGTGATTTTTATGCCACTTTGCTGAATGCAGGATTAATATATCGGCGGTCCCTCGGCTaGACAGGACGAGGAGGGGTT +
Preference number: 4 (lower is better)
Translates to: AYLPGDFYATLLNAGLIYRRSLG*TGRGGV
Trigger: AACCCCTCCTCGTCCTGTCCAGCCGAGGGACCGCCG...ATATATTAATCCTGCATTCAGCAAAGTGGCATAAAAATCACCTGGTAAGTATGC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000379551.2
ENST00000407149.7
CDS-3UTR TCA 90 bp CAATGTGCTGCATACTTACCAGGTGATTTTTATGCCACTTTGCTGAATGCAGGAGGCAGGAGAATAGCTTaGACCTGGGAGGCAGAGGTT +
Preference number: 4 (lower is better)
Translates to: QCAAYLPGDFYATLLNAGGRRIA*TWEAEV
Trigger: AACCTCTGCCTCCCAGGTTCAAGCTATTCTCCTGCC...TCCTGCATTCAGCAAAGTGGCATAAAAATCACCTGGTAAGTATGCAGCACATTG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000379551.2
CDS-3UTR TCA 90 bp TTACCAGGTGATTTTTATGCCACTTTGCTGAATGCAGGATTAATATATTTGGGCAGGGGAGGGCCTTGGTaGGGAATCTTTCCCGGTGGG +
Preference number: 4 (lower is better)
Translates to: LPGDFYATLLNAGLIYLGRGGPW*GIFPGG
Trigger: CCCACCGGGAAAGATTCCTCACCAAGGCCCTCCCCT...GCCCAAATATATTAATCCTGCATTCAGCAAAGTGGCATAAAAATCACCTGGTAA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000379551.2
ENST00000407149.7
ENST00000446965.2
ENST00000505123.5
CDS-3UTR CCA 90 bp CAATGTGCTGCATACTTACCAGGTGATTTTTATGCCACTTTGCTGAATGCAGGATTGGCTGACATTCTTTaGGGGCAAGCGAGGCAGGTC +
Preference number: 4 (lower is better)
Translates to: QCAAYLPGDFYATLLNAGLADIL*GQARQV
Trigger: GACCTGCCTCGCTTGCCCCCAAAGAATGTCAGCCAA...TCCTGCATTCAGCAAAGTGGCATAAAAATCACCTGGTAAGTATGCAGCACATTG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000379551.2
ENST00000407149.7
CDS-3UTR CCA 90 bp CAATGTGCTGCATACTTACCAGGTGATTTTTATGCCACTTTGCTGAATGCAGGATCTGTTCCTTCACCTTaGTTTTGGAGGCTGCCGGCG +
Preference number: 4 (lower is better)
Translates to: QCAAYLPGDFYATLLNAGSVPSP*FWRLPA
Trigger: CGCCGGCAGCCTCCAAAACCAAGGTGAAGGAACAGA...TCCTGCATTCAGCAAAGTGGCATAAAAATCACCTGGTAAGTATGCAGCACATTG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000379551.2
ENST00000407149.7
CDS-3UTR CCA 90 bp CAATGTGCTGCATACTTACCAGGTGATTTTTATGCCACTTTGCTGAATGCAGGAAGGTGGTGGAGGGTTTaGCTTTCTCAGGACCGTGAG +
Preference number: 4 (lower is better)
Translates to: QCAAYLPGDFYATLLNAGRWWRV*LSQDRE
Trigger: CTCACGGTCCTGAGAAAGCCAAACCCTCCACCACCT...TCCTGCATTCAGCAAAGTGGCATAAAAATCACCTGGTAAGTATGCAGCACATTG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENST00000379551.2
ENST00000407149.7
ENST00000446965.2
ENST00000505123.5
CDS-3UTR CCA 90 bp CAATGTGCTGCATACTTACCAGGTGATTTTTATGCCACTTTGCTGAATGCAGGACCTTGGAGGAGGTGGTaGAGGGTTTGGCTTTCTCAG +
Preference number: 4 (lower is better)
Translates to: QCAAYLPGDFYATLLNAGPWRRW*RVWLSQ
Trigger: CTGAGAAAGCCAAACCCTCCACCACCTCCTCCAAGG...TCCTGCATTCAGCAAAGTGGCATAAAAATCACCTGGTAAGTATGCAGCACATTG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENST00000379551.2
ENST00000407149.7
ENST00000446965.2
ENST00000505123.5
CDS-3UTR CCA 90 bp CAATGTGCTGCATACTTACCAGGTGATTTTTATGCCACTTTGCTGAATGCAGGAGTGGTTTTGGTGCAGTaGGAGGAGGCACAGTTGCAG +
Preference number: 4 (lower is better)
Translates to: QCAAYLPGDFYATLLNAGVVLVQ*EEAQLQ
Trigger: CTGCAACTGTGCCTCCTCCCACTGCACCAAAACCAC...TCCTGCATTCAGCAAAGTGGCATAAAAATCACCTGGTAAGTATGCAGCACATTG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000379551.2
ENST00000407149.7
ENST00000446965.2
ENST00000505123.5
CDS-3UTR TCA 90 bp GCATACTTACCAGGTGATTTTTATGCCACTTTGCTGAATGCAGGATTAATATATAGGGGAGGGCCTTGGTaGGGAATCTTTCCCGGTGGG +
Preference number: 4 (lower is better)
Translates to: AYLPGDFYATLLNAGLIYRGGPW*GIFPGG
Trigger: CCCACCGGGAAAGATTCCTCACCAAGGCCCTCCCCT...ATATATTAATCCTGCATTCAGCAAAGTGGCATAAAAATCACCTGGTAAGTATGC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000379551.2
ENST00000407149.7
ENST00000446965.2
ENST00000505123.5
CDS-3UTR GCA 90 bp CAATGTGCTGCATACTTACCAGGTGATTTTTATGCCACTTTGCTGAATGCAGGACCCAGATTGTGCCATTaGACTCTAGCCTGGGCAACA +
Preference number: 4 (lower is better)
Translates to: QCAAYLPGDFYATLLNAGPRLCH*TLAWAT
Trigger: TGTTGCCCAGGCTAGAGTGCAATGGCACAATCTGGG...TCCTGCATTCAGCAAAGTGGCATAAAAATCACCTGGTAAGTATGCAGCACATTG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000379551.2
CDS-3UTR GCA 90 bp CAATGTGCTGCATACTTACCAGGTGATTTTTATGCCACTTTGCTGAATGCAGGAGATAGCAGACGGGTGTaGTGGGGGTTTAATAAGCGG +
Preference number: 4 (lower is better)
Translates to: QCAAYLPGDFYATLLNAGDSRRV*WGFNKR
Trigger: CCGCTTATTAAACCCCCAGCACACCCGTCTGCTATC...TCCTGCATTCAGCAAAGTGGCATAAAAATCACCTGGTAAGTATGCAGCACATTG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENST00000379551.2
ENST00000407149.7
ENST00000446965.2
ENST00000505123.5
CDS-3UTR CCA 90 bp CAATGTGCTGCATACTTACCAGGTGATTTTTATGCCACTTTGCTGAATGCAGGACAACCTTGGAGGAGGTaGTGGAGGGTTTGGCTTTCT +
Preference number: 4 (lower is better)
Translates to: QCAAYLPGDFYATLLNAGQPWRR*WRVWLS
Trigger: AGAAAGCCAAACCCTCCACCACCTCCTCCAAGGTTG...TCCTGCATTCAGCAAAGTGGCATAAAAATCACCTGGTAAGTATGCAGCACATTG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENST00000379551.2
ENST00000407149.7
ENST00000446965.2
ENST00000505123.5
CDS-3UTR CCA 90 bp CAATGTGCTGCATACTTACCAGGTGATTTTTATGCCACTTTGCTGAATGCAGGATCTCGAGGCCCTGCCTaGGGACATCTGTCTTTTTCA +
Preference number: 4 (lower is better)
Translates to: QCAAYLPGDFYATLLNAGSRGPA*GHLSFS
Trigger: TGAAAAAGACAGATGTCCCCAGGCAGGGCCTCGAGA...TCCTGCATTCAGCAAAGTGGCATAAAAATCACCTGGTAAGTATGCAGCACATTG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENST00000379551.2
ENST00000407149.7
ENST00000446965.2
ENST00000505123.5
CDS-3UTR CCA 90 bp CAATGTGCTGCATACTTACCAGGTGATTTTTATGCCACTTTGCTGAATGCAGGAAGGAATCTTTCCCGGTaGGTGGACAGGTTCACTGTG +
Preference number: 4 (lower is better)
Translates to: QCAAYLPGDFYATLLNAGRNLSR*VDRFTV
Trigger: CACAGTGAACCTGTCCACCCACCGGGAAAGATTCCT...TCCTGCATTCAGCAAAGTGGCATAAAAATCACCTGGTAAGTATGCAGCACATTG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENST00000379551.2
ENST00000407149.7
ENST00000446965.2
ENST00000505123.5
CDS-3UTR TCA 90 bp TTACCAGGTGATTTTTATGCCACTTTGCTGAATGCAGGATTAATATATTTGGGCCCCCTTGGACTTGGCTaGCATTCTTTGGGGGCAAGC +
Preference number: 4 (lower is better)
Translates to: LPGDFYATLLNAGLIYLGPLGLG*HSLGAS
Trigger: GCTTGCCCCCAAAGAATGTCAGCCAAGTCCAAGGGG...GCCCAAATATATTAATCCTGCATTCAGCAAAGTGGCATAAAAATCACCTGGTAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 15 nt.
Matches the following 2 transcripts:
ENST00000379551.2
ENST00000407149.7
CDS-3UTR CCA 90 bp CAATGTGCTGCATACTTACCAGGTGATTTTTATGCCACTTTGCTGAATGCAGGAAGGAGGGGTTCCCCTTaGACTTGGCTGACATTCTTT +
Preference number: 4 (lower is better)
Translates to: QCAAYLPGDFYATLLNAGRRGSP*TWLTFF
Trigger: AAAGAATGTCAGCCAAGTCCAAGGGGAACCCCTCCT...TCCTGCATTCAGCAAAGTGGCATAAAAATCACCTGGTAAGTATGCAGCACATTG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000379551.2
ENST00000407149.7
CDS-3UTR CCA 90 bp GCATACTTACCAGGTGATTTTTATGCCACTTTGCTGAATGCAGGATTAATATATCCTTCACCTTGGTTTTaGAGGCTGCCGGCGGTCCCT +
Preference number: 4 (lower is better)
Translates to: AYLPGDFYATLLNAGLIYPSPWF*RLPAVP
Trigger: AGGGACCGCCGGCAGCCTCCAAAACCAAGGTGAAGG...ATATATTAATCCTGCATTCAGCAAAGTGGCATAAAAATCACCTGGTAAGTATGC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000379551.2
ENST00000407149.7
CDS-3UTR CCA 90 bp CAATGTGCTGCATACTTACCAGGTGATTTTTATGCCACTTTGCTGAATGCAGGATACAGGATTGGCAGTTaGAACCACCCTTTTGGGGTC +
Preference number: 4 (lower is better)
Translates to: QCAAYLPGDFYATLLNAGYRIGS*NHPFGV
Trigger: GACCCCAAAAGGGTGGTTCCAACTGCCAATCCTGTA...TCCTGCATTCAGCAAAGTGGCATAAAAATCACCTGGTAAGTATGCAGCACATTG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENST00000379551.2
ENST00000407149.7
ENST00000446965.2
ENST00000505123.5
CDS-3UTR CCA 90 bp CAATGTGCTGCATACTTACCAGGTGATTTTTATGCCACTTTGCTGAATGCAGGACTATGCATCAGAAGCTaGACTGGAGCCTTGTCCAAG +
Preference number: 4 (lower is better)
Translates to: QCAAYLPGDFYATLLNAGLCIRS*TGALSK
Trigger: CTTGGACAAGGCTCCAGTCCAGCTTCTGATGCATAG...TCCTGCATTCAGCAAAGTGGCATAAAAATCACCTGGTAAGTATGCAGCACATTG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENST00000379551.2
ENST00000407149.7
ENST00000446965.2
ENST00000505123.5
CDS-3UTR CCA 90 bp CAATGTGCTGCATACTTACCAGGTGATTTTTATGCCACTTTGCTGAATGCAGGACAAGATCGTCTTCTGTaGTTTTGGTGCAGTGGGAGG +
Preference number: 4 (lower is better)
Translates to: QCAAYLPGDFYATLLNAGQDRLL*FWCSGR
Trigger: CCTCCCACTGCACCAAAACCACAGAAGACGATCTTG...TCCTGCATTCAGCAAAGTGGCATAAAAATCACCTGGTAAGTATGCAGCACATTG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000379551.2
ENST00000407149.7
ENST00000446965.2
ENST00000505123.5
CDS-3UTR TCA 90 bp CAATGTGCTGCATACTTACCAGGTGATTTTTATGCCACTTTGCTGAATGCAGGACACGGTTGTAGTGGTTaGCTTCCTCAAGATCGTCTT +
Preference number: 4 (lower is better)
Translates to: QCAAYLPGDFYATLLNAGHGCSG*LPQDRL
Trigger: AAGACGATCTTGAGGAAGTCAACCACTACAACCGTG...TCCTGCATTCAGCAAAGTGGCATAAAAATCACCTGGTAAGTATGCAGCACATTG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENST00000379551.2
ENST00000407149.7
ENST00000446965.2
ENST00000505123.5
CDS-3UTR GCA 90 bp CAATGTGCTGCATACTTACCAGGTGATTTTTATGCCACTTTGCTGAATGCAGGAAGCGGTGCATTAGCCTaGACTTTGATCTTCTCTAGG +
Preference number: 4 (lower is better)
Translates to: QCAAYLPGDFYATLLNAGSGALA*TLIFSR
Trigger: CCTAGAGAAGATCAAAGTGCAGGCTAATGCACCGCT...TCCTGCATTCAGCAAAGTGGCATAAAAATCACCTGGTAAGTATGCAGCACATTG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENST00000379551.2
ENST00000407149.7
ENST00000446965.2
ENST00000505123.5
CDS-3UTR CCA 90 bp TTACCAGGTGATTTTTATGCCACTTTGCTGAATGCAGGATTAATATATTTGGGCTTGGCTGACATTCTTTaGGGGCAAGCGAGGCAGGTC +
Preference number: 4 (lower is better)
Translates to: LPGDFYATLLNAGLIYLGLADIL*GQARQV
Trigger: GACCTGCCTCGCTTGCCCCCAAAGAATGTCAGCCAA...GCCCAAATATATTAATCCTGCATTCAGCAAAGTGGCATAAAAATCACCTGGTAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000379551.2
ENST00000407149.7
CDS-3UTR CCA 90 bp TTACCAGGTGATTTTTATGCCACTTTGCTGAATGCAGGATTAATATATTTGGGCGGTTCCCCTTGGACTTaGCTGACATTCTTTGGGGGC +
Preference number: 4 (lower is better)
Translates to: LPGDFYATLLNAGLIYLGGSPWT*LTFFGG
Trigger: GCCCCCAAAGAATGTCAGCCAAGTCCAAGGGGAACC...GCCCAAATATATTAATCCTGCATTCAGCAAAGTGGCATAAAAATCACCTGGTAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENST00000379551.2
ENST00000407149.7
CDS-3UTR CCA 90 bp TTACCAGGTGATTTTTATGCCACTTTGCTGAATGCAGGATTAATATATTTGGGCTCTGTTCCTTCACCTTaGTTTTGGAGGCTGCCGGCG +
Preference number: 4 (lower is better)
Translates to: LPGDFYATLLNAGLIYLGSVPSP*FWRLPA
Trigger: CGCCGGCAGCCTCCAAAACCAAGGTGAAGGAACAGA...GCCCAAATATATTAATCCTGCATTCAGCAAAGTGGCATAAAAATCACCTGGTAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000379551.2
ENST00000407149.7
CDS-3UTR CCA 90 bp CAATGTGCTGCATACTTACCAGGTGATTTTTATGCCACTTTGCTGAATGCAGGATCAGCGTGTCCGTTTTaGAGCTGTCAGTCATCTCAT +
Preference number: 4 (lower is better)
Translates to: QCAAYLPGDFYATLLNAGSACPF*SCQSSH
Trigger: ATGAGATGACTGACAGCTCCAAAACGGACACGCTGA...TCCTGCATTCAGCAAAGTGGCATAAAAATCACCTGGTAAGTATGCAGCACATTG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000379551.2
ENST00000407149.7
ENST00000446965.2
ENST00000505123.5
CDS-3UTR CCA 90 bp TTACCAGGTGATTTTTATGCCACTTTGCTGAATGCAGGATTAATATATTTGGGCAGCAGACGGGTGTGCTaGGGGTTTAATAAGCGGTGC +
Preference number: 4 (lower is better)
Translates to: LPGDFYATLLNAGLIYLGSRRVC*GFNKRC
Trigger: GCACCGCTTATTAAACCCCCAGCACACCCGTCTGCT...GCCCAAATATATTAATCCTGCATTCAGCAAAGTGGCATAAAAATCACCTGGTAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000379551.2
ENST00000407149.7
ENST00000446965.2
ENST00000505123.5
CDS-3UTR CCA 90 bp CAATGTGCTGCATACTTACCAGGTGATTTTTATGCCACTTTGCTGAATGCAGGATTGGAACCACCCTTTTaGGGTCTTCACACTTCACAG +
Preference number: 4 (lower is better)
Translates to: QCAAYLPGDFYATLLNAGLEPPF*GLHTSQ
Trigger: CTGTGAAGTGTGAAGACCCCAAAAGGGTGGTTCCAA...TCCTGCATTCAGCAAAGTGGCATAAAAATCACCTGGTAAGTATGCAGCACATTG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000379551.2
ENST00000407149.7
ENST00000446965.2
ENST00000505123.5
CDS-3UTR CCA 90 bp TTACCAGGTGATTTTTATGCCACTTTGCTGAATGCAGGATTAATATATTTGGGCGTGGTTTTGGTGCAGTaGGAGGAGGCACAGTTGCAG +
Preference number: 4 (lower is better)
Translates to: LPGDFYATLLNAGLIYLGVVLVQ*EEAQLQ
Trigger: CTGCAACTGTGCCTCCTCCCACTGCACCAAAACCAC...GCCCAAATATATTAATCCTGCATTCAGCAAAGTGGCATAAAAATCACCTGGTAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000379551.2
ENST00000407149.7
ENST00000446965.2
ENST00000505123.5
CDS-3UTR CCA 90 bp TTACCAGGTGATTTTTATGCCACTTTGCTGAATGCAGGATTAATATATTTGGGCCGTCTTCTGTGGTTTTaGTGCAGTGGGAGGAGGCAC +
Preference number: 4 (lower is better)
Translates to: LPGDFYATLLNAGLIYLGRLLWF*CSGRRH
Trigger: GTGCCTCCTCCCACTGCACCAAAACCACAGAAGACG...GCCCAAATATATTAATCCTGCATTCAGCAAAGTGGCATAAAAATCACCTGGTAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000379551.2
ENST00000407149.7
ENST00000446965.2
ENST00000505123.5
CDS-3UTR CCA 90 bp CAATGTGCTGCATACTTACCAGGTGATTTTTATGCCACTTTGCTGAATGCAGGAGTCAGGGTGTCAATCTaGTCAACCACCTCCTTAAGT +
Preference number: 4 (lower is better)
Translates to: QCAAYLPGDFYATLLNAGVRVSI*STTSLS
Trigger: ACTTAAGGAGGTGGTTGACCAGATTGACACCCTGAC...TCCTGCATTCAGCAAAGTGGCATAAAAATCACCTGGTAAGTATGCAGCACATTG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000407149.7
CDS-3UTR CCA 90 bp CAATGTGCTGCATACTTACCAGGTGATTTTTATGCCACTTTGCTGAATGCAGGAGTCAGGGTGTCAATCTaGTCAACCACCTCTGAAGTA +
Preference number: 4 (lower is better)
Translates to: QCAAYLPGDFYATLLNAGVRVSI*STTSEV
Trigger: TACTTCAGAGGTGGTTGACCAGATTGACACCCTGAC...TCCTGCATTCAGCAAAGTGGCATAAAAATCACCTGGTAAGTATGCAGCACATTG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000446965.2
ENST00000505123.5
CDS-3UTR CCA 90 bp GCATACTTACCAGGTGATTTTTATGCCACTTTGCTGAATGCAGGATTAATATATAGCAGACGGGTGTGCTaGGGGTTTAATAAGCGGTGC +
Preference number: 4 (lower is better)
Translates to: AYLPGDFYATLLNAGLIYSRRVC*GFNKRC
Trigger: GCACCGCTTATTAAACCCCCAGCACACCCGTCTGCT...ATATATTAATCCTGCATTCAGCAAAGTGGCATAAAAATCACCTGGTAAGTATGC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000379551.2
ENST00000407149.7
ENST00000446965.2
ENST00000505123.5
CDS-3UTR CCA 90 bp GCATACTTACCAGGTGATTTTTATGCCACTTTGCTGAATGCAGGATTAATATATAGGTGGTGGAGGGTTTaGCTTTCTCAGGACCGTGAG +
Preference number: 4 (lower is better)
Translates to: AYLPGDFYATLLNAGLIYRWWRV*LSQDRE
Trigger: CTCACGGTCCTGAGAAAGCCAAACCCTCCACCACCT...ATATATTAATCCTGCATTCAGCAAAGTGGCATAAAAATCACCTGGTAAGTATGC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENST00000379551.2
ENST00000407149.7
ENST00000446965.2
ENST00000505123.5
CDS-3UTR CCA 90 bp GCATACTTACCAGGTGATTTTTATGCCACTTTGCTGAATGCAGGATTAATATATCCTTGGAGGAGGTGGTaGAGGGTTTGGCTTTCTCAG +
Preference number: 4 (lower is better)
Translates to: AYLPGDFYATLLNAGLIYPWRRW*RVWLSQ
Trigger: CTGAGAAAGCCAAACCCTCCACCACCTCCTCCAAGG...ATATATTAATCCTGCATTCAGCAAAGTGGCATAAAAATCACCTGGTAAGTATGC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENST00000379551.2
ENST00000407149.7
ENST00000446965.2
ENST00000505123.5
CDS-3UTR CCA 90 bp TTACCAGGTGATTTTTATGCCACTTTGCTGAATGCAGGATTAATATATTTGGGCAGGAATCTTTCCCGGTaGGTGGACAGGTTCACTGTG +
Preference number: 4 (lower is better)
Translates to: LPGDFYATLLNAGLIYLGRNLSR*VDRFTV
Trigger: CACAGTGAACCTGTCCACCCACCGGGAAAGATTCCT...GCCCAAATATATTAATCCTGCATTCAGCAAAGTGGCATAAAAATCACCTGGTAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENST00000379551.2
ENST00000407149.7
ENST00000446965.2
ENST00000505123.5
CDS-3UTR CCA 90 bp GCATACTTACCAGGTGATTTTTATGCCACTTTGCTGAATGCAGGATTAATATATGTGGTTTTGGTGCAGTaGGAGGAGGCACAGTTGCAG +
Preference number: 4 (lower is better)
Translates to: AYLPGDFYATLLNAGLIYVVLVQ*EEAQLQ
Trigger: CTGCAACTGTGCCTCCTCCCACTGCACCAAAACCAC...ATATATTAATCCTGCATTCAGCAAAGTGGCATAAAAATCACCTGGTAAGTATGC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000379551.2
ENST00000407149.7
ENST00000446965.2
ENST00000505123.5
CDS-3UTR CCA 90 bp GCATACTTACCAGGTGATTTTTATGCCACTTTGCTGAATGCAGGATTAATATATCGTCTTCTGTGGTTTTaGTGCAGTGGGAGGAGGCAC +
Preference number: 4 (lower is better)
Translates to: AYLPGDFYATLLNAGLIYRLLWF*CSGRRH
Trigger: GTGCCTCCTCCCACTGCACCAAAACCACAGAAGACG...ATATATTAATCCTGCATTCAGCAAAGTGGCATAAAAATCACCTGGTAAGTATGC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000379551.2
ENST00000407149.7
ENST00000446965.2
ENST00000505123.5
CDS-3UTR CCA 90 bp CAATGTGCTGCATACTTACCAGGTGATTTTTATGCCACTTTGCTGAATGCAGGATTGGTTCCTTTTATTTaGGAGTGCCTGGCATTACGG +
Preference number: 4 (lower is better)
Translates to: QCAAYLPGDFYATLLNAGLVPFI*ECLALR
Trigger: CCGTAATGCCAGGCACTCCCAAATAAAAGGAACCAA...TCCTGCATTCAGCAAAGTGGCATAAAAATCACCTGGTAAGTATGCAGCACATTG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000505123.5
CDS-3UTR TCA 90 bp GCATACTTACCAGGTGATTTTTATGCCACTTTGCTGAATGCAGGATTAATATATGGCTGTTGTGCCACTTaGGCTACTATTCAGCGTGTC +
Preference number: 4 (lower is better)
Translates to: AYLPGDFYATLLNAGLIYGCCAT*ATIQRV
Trigger: GACACGCTGAATAGTAGCTCAAGTGGCACAACAGCC...ATATATTAATCCTGCATTCAGCAAAGTGGCATAAAAATCACCTGGTAAGTATGC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENST00000379551.2
ENST00000407149.7
ENST00000446965.2
ENST00000505123.5
CDS-3UTR GCA 90 bp TTACCAGGTGATTTTTATGCCACTTTGCTGAATGCAGGATTAATATATTTGGGCGGCTGGAGGCTGTTGTaGCACTTGAGCTACTATTCA +
Preference number: 4 (lower is better)
Translates to: LPGDFYATLLNAGLIYLGGWRLL*HLSYYS
Trigger: TGAATAGTAGCTCAAGTGGCACAACAGCCTCCAGCC...GCCCAAATATATTAATCCTGCATTCAGCAAAGTGGCATAAAAATCACCTGGTAA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENST00000379551.2
ENST00000407149.7
ENST00000446965.2
ENST00000505123.5
CDS-3UTR GCA 90 bp CAATGTGCTGCATACTTACCAGGTGATTTTTATGCCACTTTGCTGAATGCAGGAGGGTTTAATAAGCGGTaGATTAGCCTGCACTTTGAT +
Preference number: 4 (lower is better)
Translates to: QCAAYLPGDFYATLLNAGGFNKR*ISLHFD
Trigger: ATCAAAGTGCAGGCTAATGCACCGCTTATTAAACCC...TCCTGCATTCAGCAAAGTGGCATAAAAATCACCTGGTAAGTATGCAGCACATTG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENST00000379551.2
ENST00000407149.7
ENST00000446965.2
ENST00000505123.5
CDS-3UTR GCA 90 bp GCATACTTACCAGGTGATTTTTATGCCACTTTGCTGAATGCAGGATTAATATATGATAGCAGACGGGTGTaGTGGGGGTTTAATAAGCGG +
Preference number: 4 (lower is better)
Translates to: AYLPGDFYATLLNAGLIYDSRRV*WGFNKR
Trigger: CCGCTTATTAAACCCCCAGCACACCCGTCTGCTATC...ATATATTAATCCTGCATTCAGCAAAGTGGCATAAAAATCACCTGGTAAGTATGC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENST00000379551.2
ENST00000407149.7
ENST00000446965.2
ENST00000505123.5
CDS-3UTR CCA 90 bp GCATACTTACCAGGTGATTTTTATGCCACTTTGCTGAATGCAGGATTAATATATCAACCTTGGAGGAGGTaGTGGAGGGTTTGGCTTTCT +
Preference number: 4 (lower is better)
Translates to: AYLPGDFYATLLNAGLIYQPWRR*WRVWLS
Trigger: AGAAAGCCAAACCCTCCACCACCTCCTCCAAGGTTG...ATATATTAATCCTGCATTCAGCAAAGTGGCATAAAAATCACCTGGTAAGTATGC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENST00000379551.2
ENST00000407149.7
ENST00000446965.2
ENST00000505123.5
CDS-3UTR CCA 90 bp TTACCAGGTGATTTTTATGCCACTTTGCTGAATGCAGGATTAATATATTTGGGCTACAGGATTGGCAGTTaGAACCACCCTTTTGGGGTC +
Preference number: 4 (lower is better)
Translates to: LPGDFYATLLNAGLIYLGYRIGS*NHPFGV
Trigger: GACCCCAAAAGGGTGGTTCCAACTGCCAATCCTGTA...GCCCAAATATATTAATCCTGCATTCAGCAAAGTGGCATAAAAATCACCTGGTAA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENST00000379551.2
ENST00000407149.7
ENST00000446965.2
ENST00000505123.5
CDS-3UTR CCA 90 bp CAATGTGCTGCATACTTACCAGGTGATTTTTATGCCACTTTGCTGAATGCAGGATGGTTTTTACAGGATTaGCAGTTGGAACCACCCTTT +
Preference number: 4 (lower is better)
Translates to: QCAAYLPGDFYATLLNAGWFLQD*QLEPPF
Trigger: AAAGGGTGGTTCCAACTGCCAATCCTGTAAAAACCA...TCCTGCATTCAGCAAAGTGGCATAAAAATCACCTGGTAAGTATGCAGCACATTG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENST00000379551.2
ENST00000407149.7
ENST00000446965.2
ENST00000505123.5
CDS-3UTR CCA 90 bp CAATGTGCTGCATACTTACCAGGTGATTTTTATGCCACTTTGCTGAATGCAGGATGTCCAAGTTACTGTTaGGTATGCAGCAGATATCTC +
Preference number: 4 (lower is better)
Translates to: QCAAYLPGDFYATLLNAGCPSYC*VCSRYL
Trigger: GAGATATCTGCTGCATACCCAACAGTAACTTGGACA...TCCTGCATTCAGCAAAGTGGCATAAAAATCACCTGGTAAGTATGCAGCACATTG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENST00000379551.2
ENST00000407149.7
ENST00000446965.2
ENST00000505123.5
CDS-3UTR CCA 90 bp TTACCAGGTGATTTTTATGCCACTTTGCTGAATGCAGGATTAATATATTTGGGCCTATGCATCAGAAGCTaGACTGGAGCCTTGTCCAAG +
Preference number: 4 (lower is better)
Translates to: LPGDFYATLLNAGLIYLGLCIRS*TGALSK
Trigger: CTTGGACAAGGCTCCAGTCCAGCTTCTGATGCATAG...GCCCAAATATATTAATCCTGCATTCAGCAAAGTGGCATAAAAATCACCTGGTAA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENST00000379551.2
ENST00000407149.7
ENST00000446965.2
ENST00000505123.5
CDS-3UTR CCA 90 bp GCATACTTACCAGGTGATTTTTATGCCACTTTGCTGAATGCAGGATTAATATATTCTCGAGGCCCTGCCTaGGGACATCTGTCTTTTTCA +
Preference number: 4 (lower is better)
Translates to: AYLPGDFYATLLNAGLIYSRGPA*GHLSFS
Trigger: TGAAAAAGACAGATGTCCCCAGGCAGGGCCTCGAGA...ATATATTAATCCTGCATTCAGCAAAGTGGCATAAAAATCACCTGGTAAGTATGC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENST00000379551.2
ENST00000407149.7
ENST00000446965.2
ENST00000505123.5
CDS-3UTR CCA 90 bp TTACCAGGTGATTTTTATGCCACTTTGCTGAATGCAGGATTAATATATTTGGGCATCTTTCCCGGTGGGTaGACAGGTTCACTGTGTAAG +
Preference number: 4 (lower is better)
Translates to: LPGDFYATLLNAGLIYLGIFPGG*TGSLCK
Trigger: CTTACACAGTGAACCTGTCCACCCACCGGGAAAGAT...GCCCAAATATATTAATCCTGCATTCAGCAAAGTGGCATAAAAATCACCTGGTAA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENST00000379551.2
ENST00000407149.7
ENST00000446965.2
ENST00000505123.5
CDS-3UTR CCA 90 bp GCATACTTACCAGGTGATTTTTATGCCACTTTGCTGAATGCAGGATTAATATATAGGAATCTTTCCCGGTaGGTGGACAGGTTCACTGTG +
Preference number: 4 (lower is better)
Translates to: AYLPGDFYATLLNAGLIYRNLSR*VDRFTV
Trigger: CACAGTGAACCTGTCCACCCACCGGGAAAGATTCCT...ATATATTAATCCTGCATTCAGCAAAGTGGCATAAAAATCACCTGGTAAGTATGC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENST00000379551.2
ENST00000407149.7
ENST00000446965.2
ENST00000505123.5
CDS-3UTR CCA 90 bp TTACCAGGTGATTTTTATGCCACTTTGCTGAATGCAGGATTAATATATTTGGGCGGGAAGCTGTTACTGTaGCTTATTCCCATTCCCCCA +
Preference number: 4 (lower is better)
Translates to: LPGDFYATLLNAGLIYLGGKLLL*LIPIPP
Trigger: TGGGGGAATGGGAATAAGCCACAGTAACAGCTTCCC...GCCCAAATATATTAATCCTGCATTCAGCAAAGTGGCATAAAAATCACCTGGTAA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENST00000379551.2
ENST00000407149.7
ENST00000446965.2
ENST00000505123.5
CDS-3UTR CCA 90 bp TTACCAGGTGATTTTTATGCCACTTTGCTGAATGCAGGATTAATATATTTGGGCCAAGATCGTCTTCTGTaGTTTTGGTGCAGTGGGAGG +
Preference number: 4 (lower is better)
Translates to: LPGDFYATLLNAGLIYLGQDRLL*FWCSGR
Trigger: CCTCCCACTGCACCAAAACCACAGAAGACGATCTTG...GCCCAAATATATTAATCCTGCATTCAGCAAAGTGGCATAAAAATCACCTGGTAA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000379551.2
ENST00000407149.7
ENST00000446965.2
ENST00000505123.5
CDS-3UTR TCA 90 bp TTACCAGGTGATTTTTATGCCACTTTGCTGAATGCAGGATTAATATATTTGGGCCACGGTTGTAGTGGTTaGCTTCCTCAAGATCGTCTT +
Preference number: 4 (lower is better)
Translates to: LPGDFYATLLNAGLIYLGHGCSG*LPQDRL
Trigger: AAGACGATCTTGAGGAAGTCAACCACTACAACCGTG...GCCCAAATATATTAATCCTGCATTCAGCAAAGTGGCATAAAAATCACCTGGTAA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENST00000379551.2
ENST00000407149.7
ENST00000446965.2
ENST00000505123.5
CDS-3UTR TCA 90 bp CAATGTGCTGCATACTTACCAGGTGATTTTTATGCCACTTTGCTGAATGCAGGATGCATACTTACCAGGTaGTTTTTATGCCACTTTGCT +
Preference number: 4 (lower is better)
Translates to: QCAAYLPGDFYATLLNAGCILTR*FLCHFA
Trigger: AGCAAAGTGGCATAAAAATCACCTGGTAAGTATGCA...TCCTGCATTCAGCAAAGTGGCATAAAAATCACCTGGTAAGTATGCAGCACATTG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENST00000379551.2
ENST00000407149.7
ENST00000446965.2
ENST00000505123.5
CDS-3UTR TCA 90 bp TTACCAGGTGATTTTTATGCCACTTTGCTGAATGCAGGATTAATATATTTGGGCATGGAGCTTCTGGAATaGCCTGCTAGAGAATGCATG +
Preference number: 4 (lower is better)
Translates to: LPGDFYATLLNAGLIYLGMELLE*PARECM
Trigger: CATGCATTCTCTAGCAGGTCATTCCAGAAGCTCCAT...GCCCAAATATATTAATCCTGCATTCAGCAAAGTGGCATAAAAATCACCTGGTAA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000505123.5
CDS-3UTR GCA 90 bp GCATACTTACCAGGTGATTTTTATGCCACTTTGCTGAATGCAGGATTAATATATGGCTGGAGGCTGTTGTaGCACTTGAGCTACTATTCA +
Preference number: 4 (lower is better)
Translates to: AYLPGDFYATLLNAGLIYGWRLL*HLSYYS
Trigger: TGAATAGTAGCTCAAGTGGCACAACAGCCTCCAGCC...ATATATTAATCCTGCATTCAGCAAAGTGGCATAAAAATCACCTGGTAAGTATGC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENST00000379551.2
ENST00000407149.7
ENST00000446965.2
ENST00000505123.5
CDS-3UTR GCA 90 bp CAATGTGCTGCATACTTACCAGGTGATTTTTATGCCACTTTGCTGAATGCAGGACATTTCGTAGAAGGGTaGCATTGGTTTTTACAGGAT +
Preference number: 4 (lower is better)
Translates to: QCAAYLPGDFYATLLNAGHFVEG*HWFLQD
Trigger: ATCCTGTAAAAACCAATGGCACCCTTCTACGAAATG...TCCTGCATTCAGCAAAGTGGCATAAAAATCACCTGGTAAGTATGCAGCACATTG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENST00000379551.2
ENST00000407149.7
ENST00000446965.2
ENST00000505123.5
CDS-3UTR GCA 90 bp CAATGTGCTGCATACTTACCAGGTGATTTTTATGCCACTTTGCTGAATGCAGGACCTTTTATTTGGGAGTaGCTGGCATTACGGATTAAA +
Preference number: 4 (lower is better)
Translates to: QCAAYLPGDFYATLLNAGPFIWE*LALRIK
Trigger: TTTAATCCGTAATGCCAGGCACTCCCAAATAAAAGG...TCCTGCATTCAGCAAAGTGGCATAAAAATCACCTGGTAAGTATGCAGCACATTG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000505123.5
CDS-3UTR GCA 90 bp GCATACTTACCAGGTGATTTTTATGCCACTTTGCTGAATGCAGGATTAATATATCCTGTTGTCACTGTATaGCTGCAGCACTGTTTCCCT +
Preference number: 4 (lower is better)
Translates to: AYLPGDFYATLLNAGLIYPVVTV*LQHCFP
Trigger: AGGGAAACAGTGCTGCAGGCATACAGTGACAACAGG...ATATATTAATCCTGCATTCAGCAAAGTGGCATAAAAATCACCTGGTAAGTATGC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000505123.5
CDS-3UTR CCA 90 bp TTACCAGGTGATTTTTATGCCACTTTGCTGAATGCAGGATTAATATATTTGGGCTCAGCGTGTCCGTTTTaGAGCTGTCAGTCATCTCAT +
Preference number: 4 (lower is better)
Translates to: LPGDFYATLLNAGLIYLGSACPF*SCQSSH
Trigger: ATGAGATGACTGACAGCTCCAAAACGGACACGCTGA...GCCCAAATATATTAATCCTGCATTCAGCAAAGTGGCATAAAAATCACCTGGTAA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000379551.2
ENST00000407149.7
ENST00000446965.2
ENST00000505123.5
CDS-3UTR CCA 90 bp TTACCAGGTGATTTTTATGCCACTTTGCTGAATGCAGGATTAATATATTTGGGCTTGGAACCACCCTTTTaGGGTCTTCACACTTCACAG +
Preference number: 4 (lower is better)
Translates to: LPGDFYATLLNAGLIYLGLEPPF*GLHTSQ
Trigger: CTGTGAAGTGTGAAGACCCCAAAAGGGTGGTTCCAA...GCCCAAATATATTAATCCTGCATTCAGCAAAGTGGCATAAAAATCACCTGGTAA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000379551.2
ENST00000407149.7
ENST00000446965.2
ENST00000505123.5
CDS-3UTR CCA 90 bp TTACCAGGTGATTTTTATGCCACTTTGCTGAATGCAGGATTAATATATTTGGGCCATCAGAAGCTGGACTaGAGCCTTGTCCAAGTTACT +
Preference number: 4 (lower is better)
Translates to: LPGDFYATLLNAGLIYLGHQKLD*SLVQVT
Trigger: AGTAACTTGGACAAGGCTCCAGTCCAGCTTCTGATG...GCCCAAATATATTAATCCTGCATTCAGCAAAGTGGCATAAAAATCACCTGGTAA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENST00000379551.2
ENST00000407149.7
ENST00000446965.2
ENST00000505123.5
CDS-3UTR CCA 90 bp GCATACTTACCAGGTGATTTTTATGCCACTTTGCTGAATGCAGGATTAATATATCTATGCATCAGAAGCTaGACTGGAGCCTTGTCCAAG +
Preference number: 4 (lower is better)
Translates to: AYLPGDFYATLLNAGLIYLCIRS*TGALSK
Trigger: CTTGGACAAGGCTCCAGTCCAGCTTCTGATGCATAG...ATATATTAATCCTGCATTCAGCAAAGTGGCATAAAAATCACCTGGTAAGTATGC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENST00000379551.2
ENST00000407149.7
ENST00000446965.2
ENST00000505123.5
CDS-3UTR CCA 90 bp GCATACTTACCAGGTGATTTTTATGCCACTTTGCTGAATGCAGGATTAATATATATCTTTCCCGGTGGGTaGACAGGTTCACTGTGTAAG +
Preference number: 4 (lower is better)
Translates to: AYLPGDFYATLLNAGLIYIFPGG*TGSLCK
Trigger: CTTACACAGTGAACCTGTCCACCCACCGGGAAAGAT...ATATATTAATCCTGCATTCAGCAAAGTGGCATAAAAATCACCTGGTAAGTATGC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENST00000379551.2
ENST00000407149.7
ENST00000446965.2
ENST00000505123.5
CDS-3UTR CCA 90 bp GCATACTTACCAGGTGATTTTTATGCCACTTTGCTGAATGCAGGATTAATATATGGGAAGCTGTTACTGTaGCTTATTCCCATTCCCCCA +
Preference number: 4 (lower is better)
Translates to: AYLPGDFYATLLNAGLIYGKLLL*LIPIPP
Trigger: TGGGGGAATGGGAATAAGCCACAGTAACAGCTTCCC...ATATATTAATCCTGCATTCAGCAAAGTGGCATAAAAATCACCTGGTAAGTATGC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENST00000379551.2
ENST00000407149.7
ENST00000446965.2
ENST00000505123.5
CDS-3UTR CCA 90 bp GCATACTTACCAGGTGATTTTTATGCCACTTTGCTGAATGCAGGATTAATATATCAAGATCGTCTTCTGTaGTTTTGGTGCAGTGGGAGG +
Preference number: 4 (lower is better)
Translates to: AYLPGDFYATLLNAGLIYQDRLL*FWCSGR
Trigger: CCTCCCACTGCACCAAAACCACAGAAGACGATCTTG...ATATATTAATCCTGCATTCAGCAAAGTGGCATAAAAATCACCTGGTAAGTATGC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000379551.2
ENST00000407149.7
ENST00000446965.2
ENST00000505123.5
CDS-3UTR TCA 90 bp TTACCAGGTGATTTTTATGCCACTTTGCTGAATGCAGGATTAATATATTTGGGCTTCTTGGGCATTTCCTaGTGTCCTGTTGTCACTGTA +
Preference number: 4 (lower is better)
Translates to: LPGDFYATLLNAGLIYLGFLGIS*CPVVTV
Trigger: TACAGTGACAACAGGACATCAGGAAATGCCCAAGAA...GCCCAAATATATTAATCCTGCATTCAGCAAAGTGGCATAAAAATCACCTGGTAA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000446965.2
ENST00000505123.5
CDS-3UTR TCA 90 bp CAATGTGCTGCATACTTACCAGGTGATTTTTATGCCACTTTGCTGAATGCAGGAAATGCATGCATCAGTTaGTTGGTTCCTTTTATTTGG +
Preference number: 4 (lower is better)
Translates to: QCAAYLPGDFYATLLNAGNACIS*LVPFIW
Trigger: CCAAATAAAAGGAACCAATCAACTGATGCATGCATT...TCCTGCATTCAGCAAAGTGGCATAAAAATCACCTGGTAAGTATGCAGCACATTG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000505123.5
CDS-3UTR GCA 90 bp GCATACTTACCAGGTGATTTTTATGCCACTTTGCTGAATGCAGGATTAATATATAGCGGTGCATTAGCCTaGACTTTGATCTTCTCTAGG +
Preference number: 4 (lower is better)
Translates to: AYLPGDFYATLLNAGLIYSGALA*TLIFSR
Trigger: CCTAGAGAAGATCAAAGTGCAGGCTAATGCACCGCT...ATATATTAATCCTGCATTCAGCAAAGTGGCATAAAAATCACCTGGTAAGTATGC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENST00000379551.2
ENST00000407149.7
ENST00000446965.2
ENST00000505123.5
CDS-3UTR GCA 90 bp TTACCAGGTGATTTTTATGCCACTTTGCTGAATGCAGGATTAATATATTTGGGCTTGTCACTGTATGCCTaGAGCACTGTTTCCCTGTTT +
Preference number: 4 (lower is better)
Translates to: LPGDFYATLLNAGLIYLGLSLYA*STVSLF
Trigger: AAACAGGGAAACAGTGCTGCAGGCATACAGTGACAA...GCCCAAATATATTAATCCTGCATTCAGCAAAGTGGCATAAAAATCACCTGGTAA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000505123.5
CDS-3UTR CCA 90 bp GCATACTTACCAGGTGATTTTTATGCCACTTTGCTGAATGCAGGATTAATATATTCAGCGTGTCCGTTTTaGAGCTGTCAGTCATCTCAT +
Preference number: 4 (lower is better)
Translates to: AYLPGDFYATLLNAGLIYSACPF*SCQSSH
Trigger: ATGAGATGACTGACAGCTCCAAAACGGACACGCTGA...ATATATTAATCCTGCATTCAGCAAAGTGGCATAAAAATCACCTGGTAAGTATGC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000379551.2
ENST00000407149.7
ENST00000446965.2
ENST00000505123.5
CDS-3UTR CCA 90 bp GCATACTTACCAGGTGATTTTTATGCCACTTTGCTGAATGCAGGATTAATATATTTGGAACCACCCTTTTaGGGTCTTCACACTTCACAG +
Preference number: 4 (lower is better)
Translates to: AYLPGDFYATLLNAGLIYLEPPF*GLHTSQ
Trigger: CTGTGAAGTGTGAAGACCCCAAAAGGGTGGTTCCAA...ATATATTAATCCTGCATTCAGCAAAGTGGCATAAAAATCACCTGGTAAGTATGC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000379551.2
ENST00000407149.7
ENST00000446965.2
ENST00000505123.5
CDS-3UTR CCA 90 bp TTACCAGGTGATTTTTATGCCACTTTGCTGAATGCAGGATTAATATATTTGGGCGTAGAAGGGTGCCATTaGTTTTTACAGGATTGGCAG +
Preference number: 4 (lower is better)
Translates to: LPGDFYATLLNAGLIYLGVEGCH*FLQDWQ
Trigger: CTGCCAATCCTGTAAAAACCAATGGCACCCTTCTAC...GCCCAAATATATTAATCCTGCATTCAGCAAAGTGGCATAAAAATCACCTGGTAA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENST00000379551.2
ENST00000407149.7
ENST00000446965.2
ENST00000505123.5
CDS-3UTR CCA 90 bp GCATACTTACCAGGTGATTTTTATGCCACTTTGCTGAATGCAGGATTAATATATCATCAGAAGCTGGACTaGAGCCTTGTCCAAGTTACT +
Preference number: 4 (lower is better)
Translates to: AYLPGDFYATLLNAGLIYHQKLD*SLVQVT
Trigger: AGTAACTTGGACAAGGCTCCAGTCCAGCTTCTGATG...ATATATTAATCCTGCATTCAGCAAAGTGGCATAAAAATCACCTGGTAAGTATGC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENST00000379551.2
ENST00000407149.7
ENST00000446965.2
ENST00000505123.5
CDS-3UTR CCA 90 bp GCATACTTACCAGGTGATTTTTATGCCACTTTGCTGAATGCAGGATTAATATATGTCAGGGTGTCAATCTaGTCAACCACCTCTGAAGTA +
Preference number: 4 (lower is better)
Translates to: AYLPGDFYATLLNAGLIYVRVSI*STTSEV
Trigger: TACTTCAGAGGTGGTTGACCAGATTGACACCCTGAC...ATATATTAATCCTGCATTCAGCAAAGTGGCATAAAAATCACCTGGTAAGTATGC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000446965.2
ENST00000505123.5
CDS-3UTR GCA 90 bp TTACCAGGTGATTTTTATGCCACTTTGCTGAATGCAGGATTAATATATTTGGGCGGGTTTAATAAGCGGTaGATTAGCCTGCACTTTGAT +
Preference number: 4 (lower is better)
Translates to: LPGDFYATLLNAGLIYLGGFNKR*ISLHFD
Trigger: ATCAAAGTGCAGGCTAATGCACCGCTTATTAAACCC...GCCCAAATATATTAATCCTGCATTCAGCAAAGTGGCATAAAAATCACCTGGTAA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENST00000379551.2
ENST00000407149.7
ENST00000446965.2
ENST00000505123.5
CDS-3UTR GCA 90 bp CAATGTGCTGCATACTTACCAGGTGATTTTTATGCCACTTTGCTGAATGCAGGAAAAATAGGTGAAATCTaGAGGTTCACAGTTTGTCAT +
Preference number: 4 (lower is better)
Translates to: QCAAYLPGDFYATLLNAGKIGEI*RFTVCH
Trigger: ATGACAAACTGTGAACCTGCAGATTTCACCTATTTT...TCCTGCATTCAGCAAAGTGGCATAAAAATCACCTGGTAAGTATGCAGCACATTG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000379551.2
ENST00000407149.7
CDS-3UTR CCA 90 bp GCATACTTACCAGGTGATTTTTATGCCACTTTGCTGAATGCAGGATTAATATATGTAGAAGGGTGCCATTaGTTTTTACAGGATTGGCAG +
Preference number: 4 (lower is better)
Translates to: AYLPGDFYATLLNAGLIYVEGCH*FLQDWQ
Trigger: CTGCCAATCCTGTAAAAACCAATGGCACCCTTCTAC...ATATATTAATCCTGCATTCAGCAAAGTGGCATAAAAATCACCTGGTAAGTATGC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENST00000379551.2
ENST00000407149.7
ENST00000446965.2
ENST00000505123.5
CDS-3UTR CCA 90 bp TTACCAGGTGATTTTTATGCCACTTTGCTGAATGCAGGATTAATATATTTGGGCTGTCCAAGTTACTGTTaGGTATGCAGCAGATATCTC +
Preference number: 4 (lower is better)
Translates to: LPGDFYATLLNAGLIYLGCPSYC*VCSRYL
Trigger: GAGATATCTGCTGCATACCCAACAGTAACTTGGACA...GCCCAAATATATTAATCCTGCATTCAGCAAAGTGGCATAAAAATCACCTGGTAA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENST00000379551.2
ENST00000407149.7
ENST00000446965.2
ENST00000505123.5
CDS-3UTR TCA 90 bp TTACCAGGTGATTTTTATGCCACTTTGCTGAATGCAGGATTAATATATTTGGGCGGGCTTTTTATTGCTTaGGTAGAAAGTGCTCATTAC +
Preference number: 4 (lower is better)
Translates to: LPGDFYATLLNAGLIYLGGLFIA*VESAHY
Trigger: GTAATGAGCACTTTCTACTCAAGCAATAAAAAGCCC...GCCCAAATATATTAATCCTGCATTCAGCAAAGTGGCATAAAAATCACCTGGTAA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENST00000379551.2
ENST00000407149.7
ENST00000446965.2
ENST00000505123.5
CDS-3UTR TCA 90 bp TTACCAGGTGATTTTTATGCCACTTTGCTGAATGCAGGATTAATATATTTGGGCTGCATACTTACCAGGTaGTTTTTATGCCACTTTGCT +
Preference number: 4 (lower is better)
Translates to: LPGDFYATLLNAGLIYLGCILTR*FLCHFA
Trigger: AGCAAAGTGGCATAAAAATCACCTGGTAAGTATGCA...GCCCAAATATATTAATCCTGCATTCAGCAAAGTGGCATAAAAATCACCTGGTAA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENST00000379551.2
ENST00000407149.7
ENST00000446965.2
ENST00000505123.5
CDS-3UTR GCA 90 bp TTACCAGGTGATTTTTATGCCACTTTGCTGAATGCAGGATTAATATATTTGGGCCATTTCGTAGAAGGGTaGCATTGGTTTTTACAGGAT +
Preference number: 4 (lower is better)
Translates to: LPGDFYATLLNAGLIYLGHFVEG*HWFLQD
Trigger: ATCCTGTAAAAACCAATGGCACCCTTCTACGAAATG...GCCCAAATATATTAATCCTGCATTCAGCAAAGTGGCATAAAAATCACCTGGTAA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENST00000379551.2
ENST00000407149.7
ENST00000446965.2
ENST00000505123.5
CDS-3UTR GCA 90 bp TTACCAGGTGATTTTTATGCCACTTTGCTGAATGCAGGATTAATATATTTGGGCAGTTACTGTTGGGTATaGAGCAGATATCTCCATTTG +
Preference number: 4 (lower is better)
Translates to: LPGDFYATLLNAGLIYLGSYCWV*SRYLHL
Trigger: CAAATGGAGATATCTGCTGCATACCCAACAGTAACT...GCCCAAATATATTAATCCTGCATTCAGCAAAGTGGCATAAAAATCACCTGGTAA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENST00000379551.2
ENST00000407149.7
ENST00000446965.2
ENST00000505123.5
CDS-3UTR CCA 90 bp GCATACTTACCAGGTGATTTTTATGCCACTTTGCTGAATGCAGGATTAATATATTGGTTTTTACAGGATTaGCAGTTGGAACCACCCTTT +
Preference number: 4 (lower is better)
Translates to: AYLPGDFYATLLNAGLIYWFLQD*QLEPPF
Trigger: AAAGGGTGGTTCCAACTGCCAATCCTGTAAAAACCA...ATATATTAATCCTGCATTCAGCAAAGTGGCATAAAAATCACCTGGTAAGTATGC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENST00000379551.2
ENST00000407149.7
ENST00000446965.2
ENST00000505123.5
CDS-3UTR CCA 90 bp TTACCAGGTGATTTTTATGCCACTTTGCTGAATGCAGGATTAATATATTTGGGCGCAGATATCTCCATTTaGAATTTTGTTAGGTCCACC +
Preference number: 4 (lower is better)
Translates to: LPGDFYATLLNAGLIYLGADISI*NFVRST
Trigger: GGTGGACCTAACAAAATTCCAAATGGAGATATCTGC...GCCCAAATATATTAATCCTGCATTCAGCAAAGTGGCATAAAAATCACCTGGTAA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000379551.2
ENST00000407149.7
ENST00000446965.2
ENST00000505123.5
CDS-3UTR CCA 90 bp GCATACTTACCAGGTGATTTTTATGCCACTTTGCTGAATGCAGGATTAATATATTGTCCAAGTTACTGTTaGGTATGCAGCAGATATCTC +
Preference number: 4 (lower is better)
Translates to: AYLPGDFYATLLNAGLIYCPSYC*VCSRYL
Trigger: GAGATATCTGCTGCATACCCAACAGTAACTTGGACA...ATATATTAATCCTGCATTCAGCAAAGTGGCATAAAAATCACCTGGTAAGTATGC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENST00000379551.2
ENST00000407149.7
ENST00000446965.2
ENST00000505123.5
CDS-3UTR TCA 90 bp GCATACTTACCAGGTGATTTTTATGCCACTTTGCTGAATGCAGGATTAATATATTGCATACTTACCAGGTaGTTTTTATGCCACTTTGCT +
Preference number: 4 (lower is better)
Translates to: AYLPGDFYATLLNAGLIYCILTR*FLCHFA
Trigger: AGCAAAGTGGCATAAAAATCACCTGGTAAGTATGCA...ATATATTAATCCTGCATTCAGCAAAGTGGCATAAAAATCACCTGGTAAGTATGC
37% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENST00000379551.2
ENST00000407149.7
ENST00000446965.2
ENST00000505123.5
CDS-3UTR GCA 90 bp GCATACTTACCAGGTGATTTTTATGCCACTTTGCTGAATGCAGGATTAATATATCATTTCGTAGAAGGGTaGCATTGGTTTTTACAGGAT +
Preference number: 4 (lower is better)
Translates to: AYLPGDFYATLLNAGLIYHFVEG*HWFLQD
Trigger: ATCCTGTAAAAACCAATGGCACCCTTCTACGAAATG...ATATATTAATCCTGCATTCAGCAAAGTGGCATAAAAATCACCTGGTAAGTATGC
37% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENST00000379551.2
ENST00000407149.7
ENST00000446965.2
ENST00000505123.5
CDS-3UTR GCA 90 bp GCATACTTACCAGGTGATTTTTATGCCACTTTGCTGAATGCAGGATTAATATATAGTTACTGTTGGGTATaGAGCAGATATCTCCATTTG +
Preference number: 4 (lower is better)
Translates to: AYLPGDFYATLLNAGLIYSYCWV*SRYLHL
Trigger: CAAATGGAGATATCTGCTGCATACCCAACAGTAACT...ATATATTAATCCTGCATTCAGCAAAGTGGCATAAAAATCACCTGGTAAGTATGC
37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENST00000379551.2
ENST00000407149.7
ENST00000446965.2
ENST00000505123.5
CDS-3UTR CCA 90 bp GCATACTTACCAGGTGATTTTTATGCCACTTTGCTGAATGCAGGATTAATATATGCAGATATCTCCATTTaGAATTTTGTTAGGTCCACC +
Preference number: 4 (lower is better)
Translates to: AYLPGDFYATLLNAGLIYADISI*NFVRST
Trigger: GGTGGACCTAACAAAATTCCAAATGGAGATATCTGC...ATATATTAATCCTGCATTCAGCAAAGTGGCATAAAAATCACCTGGTAAGTATGC
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000379551.2
ENST00000407149.7
ENST00000446965.2
ENST00000505123.5
CDS-3UTR CCA 90 bp GCATACTTACCAGGTGATTTTTATGCCACTTTGCTGAATGCAGGATTAATATATTTATTTGGGAGTGCCTaGCATTACGGATTAAAAGCT +
Preference number: 4 (lower is better)
Translates to: AYLPGDFYATLLNAGLIYLFGSA*HYGLKA
Trigger: AGCTTTTAATCCGTAATGCCAGGCACTCCCAAATAA...ATATATTAATCCTGCATTCAGCAAAGTGGCATAAAAATCACCTGGTAAGTATGC
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000505123.5
CDS-3UTR GCA 90 bp TTACCAGGTGATTTTTATGCCACTTTGCTGAATGCAGGATTAATATATTTGGGCAAAATAGGTGAAATCTaGAGGTTCACAGTTTGTCAT +
Preference number: 4 (lower is better)
Translates to: LPGDFYATLLNAGLIYLGKIGEI*RFTVCH
Trigger: ATGACAAACTGTGAACCTGCAGATTTCACCTATTTT...GCCCAAATATATTAATCCTGCATTCAGCAAAGTGGCATAAAAATCACCTGGTAA
36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000379551.2
ENST00000407149.7
CDS-3UTR CCA 90 bp GCATACTTACCAGGTGATTTTTATGCCACTTTGCTGAATGCAGGATTAATATATCATGCATCAGTTGATTaGTTCCTTTTATTTGGGAGT +
Preference number: 4 (lower is better)
Translates to: AYLPGDFYATLLNAGLIYHASVD*FLLFGS
Trigger: ACTCCCAAATAAAAGGAACCAATCAACTGATGCATG...ATATATTAATCCTGCATTCAGCAAAGTGGCATAAAAATCACCTGGTAAGTATGC
36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000505123.5
CDS GCA 90 bp CAAGCGAGGCAGGTCAGGACAGGCGGGCGAGCGGAGGCTGCTGCGTaGCCCCGTCCCTGGCGCTGCTACGGCCGCTGCCGCCCCGGTCCC +
Preference number: 5 (lower is better)
Translates to: QARQVRTGGRAEAAA*PRPWRCYGRCRPGP
Trigger: GGGACCGGGGCGGCAGCGGCCGTAGCAGCGCCAGGGACGGGGGCACGCAGCAGCCTCCGCTCGCCCGCCTGTCCTGACCTGCCTCGCTTG
78% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000379551.2
ENST00000407149.7
CDS CCA 90 bp CCTTTTGGGGTCTTCACACTTCACAGGTGTCAACCTTGGAGGAGGTaGTGGAGGGTTTGGCTTTCTCAGGACCGTGAGGATAGCAGACGG +
Preference number: 5 (lower is better)
Translates to: PFGVFTLHRCQPWRR*WRVWLSQDREDSRR
Trigger: CCGTCTGCTATCCTCACGGTCCTGAGAAAGCCAAACCCTCCACCACCTCCTCCAAGGTTGACACCTGTGAAGTGTGAAGACCCCAAAAGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENST00000379551.2
ENST00000407149.7
ENST00000446965.2
ENST00000505123.5
ENST00000509923.1
CDS CCA 90 bp TGGAACCACCCTTTTGGGGTCTTCACACTTCACAGGTGTCAACCTTaGAGGAGGTGGTGGAGGGTTTGGCTTTCTCAGGACCGTGAGGAT +
Preference number: 5 (lower is better)
Translates to: WNHPFGVFTLHRCQP*RRWWRVWLSQDRED
Trigger: ATCCTCACGGTCCTGAGAAAGCCAAACCCTCCACCACCTCCTCCAAGGTTGACACCTGTGAAGTGTGAAGACCCCAAAAGGGTGGTTCCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENST00000379551.2
ENST00000407149.7
ENST00000446965.2
ENST00000505123.5
ENST00000509923.1
CDS GCA 90 bp CGTTCTCGAGGCCCTGCCTGGGGACATCTGTCTTTTTCAGGTCTATaGATCAGAAGCTGGACTGGAGCCTTGTCCAAGTTACTGTTGGGT +
Preference number: 5 (lower is better)
Translates to: RSRGPAWGHLSFSGL*IRSWTGALSKLLLG
Trigger: ACCCAACAGTAACTTGGACAAGGCTCCAGTCCAGCTTCTGATGCATAGACCTGAAAAAGACAGATGTCCCCAGGCAGGGCCTCGAGAACG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENST00000379551.2
ENST00000407149.7
ENST00000446965.2
ENST00000505123.5
ENST00000509923.1
CDS GCA 90 bp ATAGCAGACGGGTGTGCTGGGGGTTTAATAAGCGGTGCATTAGCCTaGACTTTGATCTTCTCTAGGCTGGAGGCTGTTGTGCCACTTGAG +
Preference number: 5 (lower is better)
Translates to: IADGCAGGLISGALA*TLIFSRLEAVVPLE
Trigger: CTCAAGTGGCACAACAGCCTCCAGCCTAGAGAAGATCAAAGTGCAGGCTAATGCACCGCTTATTAAACCCCCAGCACACCCGTCTGCTAT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENST00000379551.2
ENST00000407149.7
ENST00000446965.2
ENST00000505123.5
ENST00000509923.1
CDS GCA 90 bp TGGAGGGTTTGGCTTTCTCAGGACCGTGAGGATAGCAGACGGGTGTaGTGGGGGTTTAATAAGCGGTGCATTAGCCTGCACTTTGATCTT +
Preference number: 5 (lower is better)
Translates to: WRVWLSQDREDSRRV*WGFNKRCISLHFDL
Trigger: AAGATCAAAGTGCAGGCTAATGCACCGCTTATTAAACCCCCAGCACACCCGTCTGCTATCCTCACGGTCCTGAGAAAGCCAAACCCTCCA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENST00000379551.2
ENST00000407149.7
ENST00000446965.2
ENST00000505123.5
ENST00000509923.1
CDS CCA 90 bp TGGAGGCTGTTGTGCCACTTGAGCTACTATTCAGCGTGTCCGTTTTaGAGCTGTCAGTCATCTCATCCTCCAGCTGTAGGTCAGAGGTCA +
Preference number: 5 (lower is better)
Translates to: WRLLCHLSYYSACPF*SCQSSHPPAVGQRS
Trigger: TGACCTCTGACCTACAGCTGGAGGATGAGATGACTGACAGCTCCAAAACGGACACGCTGAATAGTAGCTCAAGTGGCACAACAGCCTCCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENST00000379551.2
ENST00000407149.7
ENST00000446965.2
ENST00000505123.5
ENST00000509923.1
CDS CCA 90 bp AGGGTTTGGCTTTCTCAGGACCGTGAGGATAGCAGACGGGTGTGCTaGGGGTTTAATAAGCGGTGCATTAGCCTGCACTTTGATCTTCTC +
Preference number: 5 (lower is better)
Translates to: RVWLSQDREDSRRVC*GFNKRCISLHFDLL
Trigger: GAGAAGATCAAAGTGCAGGCTAATGCACCGCTTATTAAACCCCCAGCACACCCGTCTGCTATCCTCACGGTCCTGAGAAAGCCAAACCCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENST00000379551.2
ENST00000407149.7
ENST00000446965.2
ENST00000505123.5
ENST00000509923.1
CDS CCA 90 bp GGGTGCCATTGGTTTTTACAGGATTGGCAGTTGGAACCACCCTTTTaGGGTCTTCACACTTCACAGGTGTCAACCTTGGAGGAGGTGGTG +
Preference number: 5 (lower is better)
Translates to: GCHWFLQDWQLEPPF*GLHTSQVSTLEEVV
Trigger: CACCACCTCCTCCAAGGTTGACACCTGTGAAGTGTGAAGACCCCAAAAGGGTGGTTCCAACTGCCAATCCTGTAAAAACCAATGGCACCC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENST00000379551.2
ENST00000407149.7
ENST00000446965.2
ENST00000505123.5
ENST00000509923.1
CDS-3UTR CAA 90 bp CAATGTGCTGCATACTTACCAGGTGATTTTTATGCCACTTTGCTGAATGCAGGATCCTTCACCTTGGTTTaGGAGGCTGCCGGCGGTCCC +
Preference number: 5 (lower is better)
Translates to: QCAAYLPGDFYATLLNAGSFTLV*EAAGGP
Trigger: GGGACCGCCGGCAGCCTCCAAAACCAAGGTGAAGGA...TCCTGCATTCAGCAAAGTGGCATAAAAATCACCTGGTAAGTATGCAGCACATTG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000379551.2
ENST00000407149.7
CDS CCA 90 bp CCTGCCTGGGGACATCTGTCTTTTTCAGGTCTATGCATCAGAAGCTaGACTGGAGCCTTGTCCAAGTTACTGTTGGGTATGCAGCAGATA +
Preference number: 5 (lower is better)
Translates to: PAWGHLSFSGLCIRS*TGALSKLLLGMQQI
Trigger: TATCTGCTGCATACCCAACAGTAACTTGGACAAGGCTCCAGTCCAGCTTCTGATGCATAGACCTGAAAAAGACAGATGTCCCCAGGCAGG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENST00000379551.2
ENST00000407149.7
ENST00000446965.2
ENST00000505123.5
ENST00000509923.1
CDS CCA 90 bp CTGGGGACATCTGTCTTTTTCAGGTCTATGCATCAGAAGCTGGACTaGAGCCTTGTCCAAGTTACTGTTGGGTATGCAGCAGATATCTCC +
Preference number: 5 (lower is better)
Translates to: LGTSVFFRSMHQKLD*SLVQVTVGYAADIS
Trigger: GGAGATATCTGCTGCATACCCAACAGTAACTTGGACAAGGCTCCAGTCCAGCTTCTGATGCATAGACCTGAAAAAGACAGATGTCCCCAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENST00000379551.2
ENST00000407149.7
ENST00000446965.2
ENST00000505123.5
ENST00000509923.1
CDS-3UTR CAA 90 bp CAATGTGCTGCATACTTACCAGGTGATTTTTATGCCACTTTGCTGAATGCAGGAGAGGAGGGGTTCCCCTaGGACTTGGCTGACATTCTT +
Preference number: 5 (lower is better)
Translates to: QCAAYLPGDFYATLLNAGEEGFP*DLADIL
Trigger: AAGAATGTCAGCCAAGTCCAAGGGGAACCCCTCCTC...TCCTGCATTCAGCAAAGTGGCATAAAAATCACCTGGTAAGTATGCAGCACATTG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000379551.2
ENST00000407149.7
CDS-3UTR CAA 90 bp TTACCAGGTGATTTTTATGCCACTTTGCTGAATGCAGGATTAATATATTTGGGCAGGGAGGGGAGGGCCTaGGTGAGGAATCTTTCCCGG +
Preference number: 5 (lower is better)
Translates to: LPGDFYATLLNAGLIYLGREGRA*VRNLSR
Trigger: CCGGGAAAGATTCCTCACCAAGGCCCTCCCCTCCCT...GCCCAAATATATTAATCCTGCATTCAGCAAAGTGGCATAAAAATCACCTGGTAA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000379551.2
ENST00000407149.7
ENST00000446965.2
ENST00000505123.5
CDS CCA 90 bp TACTGTACTTTTTCATTAAACCGAACTCGTTCTCGAGGCCCTGCCTaGGGACATCTGTCTTTTTCAGGTCTATGCATCAGAAGCTGGACT +
Preference number: 5 (lower is better)
Translates to: YCTFSLNRTRSRGPA*GHLSFSGLCIRSWT
Trigger: AGTCCAGCTTCTGATGCATAGACCTGAAAAAGACAGATGTCCCCAGGCAGGGCCTCGAGAACGAGTTCGGTTTAATGAAAAAGTACAGTA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENST00000379551.2
ENST00000407149.7
ENST00000446965.2
ENST00000505123.5
CDS-3UTR CAA 90 bp GCATACTTACCAGGTGATTTTTATGCCACTTTGCTGAATGCAGGATTAATATATTCCTTCACCTTGGTTTaGGAGGCTGCCGGCGGTCCC +
Preference number: 5 (lower is better)
Translates to: AYLPGDFYATLLNAGLIYSFTLV*EAAGGP
Trigger: GGGACCGCCGGCAGCCTCCAAAACCAAGGTGAAGGA...ATATATTAATCCTGCATTCAGCAAAGTGGCATAAAAATCACCTGGTAAGTATGC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000379551.2
ENST00000407149.7
CDS-3UTR CAA 90 bp CAATGTGCTGCATACTTACCAGGTGATTTTTATGCCACTTTGCTGAATGCAGGACTAGGCTGGAGGCTGTaGTGCCACTTGAGCTACTAT +
Preference number: 5 (lower is better)
Translates to: QCAAYLPGDFYATLLNAGLGWRL*CHLSYY
Trigger: ATAGTAGCTCAAGTGGCACAACAGCCTCCAGCCTAG...TCCTGCATTCAGCAAAGTGGCATAAAAATCACCTGGTAAGTATGCAGCACATTG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENST00000379551.2
ENST00000407149.7
ENST00000446965.2
ENST00000505123.5
CDS-3UTR CAA 90 bp CAATGTGCTGCATACTTACCAGGTGATTTTTATGCCACTTTGCTGAATGCAGGAAGCTGGACTGGAGCCTaGTCCAAGTTACTGTTGGGT +
Preference number: 5 (lower is better)
Translates to: QCAAYLPGDFYATLLNAGSWTGA*SKLLLG
Trigger: ACCCAACAGTAACTTGGACAAGGCTCCAGTCCAGCT...TCCTGCATTCAGCAAAGTGGCATAAAAATCACCTGGTAAGTATGCAGCACATTG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENST00000379551.2
ENST00000407149.7
ENST00000446965.2
ENST00000505123.5
CDS-3UTR CAA 90 bp GCATACTTACCAGGTGATTTTTATGCCACTTTGCTGAATGCAGGATTAATATATAGGGAGGGGAGGGCCTaGGTGAGGAATCTTTCCCGG +
Preference number: 5 (lower is better)
Translates to: AYLPGDFYATLLNAGLIYREGRA*VRNLSR
Trigger: CCGGGAAAGATTCCTCACCAAGGCCCTCCCCTCCCT...ATATATTAATCCTGCATTCAGCAAAGTGGCATAAAAATCACCTGGTAAGTATGC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000379551.2
ENST00000407149.7
ENST00000446965.2
ENST00000505123.5
CDS-3UTR CAA 90 bp TTACCAGGTGATTTTTATGCCACTTTGCTGAATGCAGGATTAATATATTTGGGCGGGTTCCCCTTGGACTaGGCTGACATTCTTTGGGGG +
Preference number: 5 (lower is better)
Translates to: LPGDFYATLLNAGLIYLGGFPLD*ADILWG
Trigger: CCCCCAAAGAATGTCAGCCAAGTCCAAGGGGAACCC...GCCCAAATATATTAATCCTGCATTCAGCAAAGTGGCATAAAAATCACCTGGTAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000379551.2
ENST00000407149.7
CDS-3UTR CAA 90 bp CAATGTGCTGCATACTTACCAGGTGATTTTTATGCCACTTTGCTGAATGCAGGATTCAGCGTGTCCGTTTaGGAGCTGTCAGTCATCTCA +
Preference number: 5 (lower is better)
Translates to: QCAAYLPGDFYATLLNAGFSVSV*ELSVIS
Trigger: TGAGATGACTGACAGCTCCAAAACGGACACGCTGAA...TCCTGCATTCAGCAAAGTGGCATAAAAATCACCTGGTAAGTATGCAGCACATTG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENST00000379551.2
ENST00000407149.7
ENST00000446965.2
ENST00000505123.5
CDS-3UTR CAA 90 bp CAATGTGCTGCATACTTACCAGGTGATTTTTATGCCACTTTGCTGAATGCAGGAAGGCTGTTGTGCCACTaGAGCTACTATTCAGCGTGT +
Preference number: 5 (lower is better)
Translates to: QCAAYLPGDFYATLLNAGRLLCH*SYYSAC
Trigger: ACACGCTGAATAGTAGCTCAAGTGGCACAACAGCCT...TCCTGCATTCAGCAAAGTGGCATAAAAATCACCTGGTAAGTATGCAGCACATTG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENST00000379551.2
ENST00000407149.7
ENST00000446965.2
ENST00000505123.5
CDS-3UTR CAA 90 bp CAATGTGCTGCATACTTACCAGGTGATTTTTATGCCACTTTGCTGAATGCAGGAGTTGGAACCACCCTTTaGGGGTCTTCACACTTCACA +
Preference number: 5 (lower is better)
Translates to: QCAAYLPGDFYATLLNAGVGTTL*GSSHFT
Trigger: TGTGAAGTGTGAAGACCCCAAAAGGGTGGTTCCAAC...TCCTGCATTCAGCAAAGTGGCATAAAAATCACCTGGTAAGTATGCAGCACATTG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000379551.2
ENST00000407149.7
ENST00000446965.2
ENST00000505123.5
CDS-3UTR CAA 90 bp CAATGTGCTGCATACTTACCAGGTGATTTTTATGCCACTTTGCTGAATGCAGGATTACAGGATTGGCAGTaGGAACCACCCTTTTGGGGT +
Preference number: 5 (lower is better)
Translates to: QCAAYLPGDFYATLLNAGLQDWQ*EPPFWG
Trigger: ACCCCAAAAGGGTGGTTCCAACTGCCAATCCTGTAA...TCCTGCATTCAGCAAAGTGGCATAAAAATCACCTGGTAAGTATGCAGCACATTG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENST00000379551.2
ENST00000407149.7
ENST00000446965.2
ENST00000505123.5
CDS-3UTR CAA 90 bp CAATGTGCTGCATACTTACCAGGTGATTTTTATGCCACTTTGCTGAATGCAGGATTTCCTGATGTCCTGTaGTCACTGTATGCCTGCAGC +
Preference number: 5 (lower is better)
Translates to: QCAAYLPGDFYATLLNAGFPDVL*SLYACS
Trigger: GCTGCAGGCATACAGTGACAACAGGACATCAGGAAA...TCCTGCATTCAGCAAAGTGGCATAAAAATCACCTGGTAAGTATGCAGCACATTG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000446965.2
ENST00000505123.5
CDS-3UTR CAA 90 bp TTACCAGGTGATTTTTATGCCACTTTGCTGAATGCAGGATTAATATATTTGGGCATCTGTTCCTTCACCTaGGTTTTGGAGGCTGCCGGC +
Preference number: 5 (lower is better)
Translates to: LPGDFYATLLNAGLIYLGICSFT*VLEAAG
Trigger: GCCGGCAGCCTCCAAAACCAAGGTGAAGGAACAGAT...GCCCAAATATATTAATCCTGCATTCAGCAAAGTGGCATAAAAATCACCTGGTAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000379551.2
ENST00000407149.7
CDS-3UTR CAA 90 bp CAATGTGCTGCATACTTACCAGGTGATTTTTATGCCACTTTGCTGAATGCAGGACGTAGAAGGGTGCCATaGGTTTTTACAGGATTGGCA +
Preference number: 5 (lower is better)
Translates to: QCAAYLPGDFYATLLNAGRRRVP*VFTGLA
Trigger: TGCCAATCCTGTAAAAACCAATGGCACCCTTCTACG...TCCTGCATTCAGCAAAGTGGCATAAAAATCACCTGGTAAGTATGCAGCACATTG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENST00000379551.2
ENST00000407149.7
ENST00000446965.2
ENST00000505123.5
CDS-3UTR CAA 90 bp TTACCAGGTGATTTTTATGCCACTTTGCTGAATGCAGGATTAATATATTTGGGCATCTCCTTAAGTTCCTaGGCCACGTCCTTCAGGTCG +
Preference number: 5 (lower is better)
Translates to: LPGDFYATLLNAGLIYLGISLSS*ATSFRS
Trigger: CGACCTGAAGGACGTGGCCAAGGAACTTAAGGAGAT...GCCCAAATATATTAATCCTGCATTCAGCAAAGTGGCATAAAAATCACCTGGTAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000379551.2
CDS-3UTR CAA 90 bp TTACCAGGTGATTTTTATGCCACTTTGCTGAATGCAGGATTAATATATTTGGGCCTAGGCTGGAGGCTGTaGTGCCACTTGAGCTACTAT +
Preference number: 5 (lower is better)
Translates to: LPGDFYATLLNAGLIYLGLGWRL*CHLSYY
Trigger: ATAGTAGCTCAAGTGGCACAACAGCCTCCAGCCTAG...GCCCAAATATATTAATCCTGCATTCAGCAAAGTGGCATAAAAATCACCTGGTAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENST00000379551.2
ENST00000407149.7
ENST00000446965.2
ENST00000505123.5
CDS-3UTR CAA 90 bp CAATGTGCTGCATACTTACCAGGTGATTTTTATGCCACTTTGCTGAATGCAGGATTGGTTTTTACAGGATaGGCAGTTGGAACCACCCTT +
Preference number: 5 (lower is better)
Translates to: QCAAYLPGDFYATLLNAGLVFTG*AVGTTL
Trigger: AAGGGTGGTTCCAACTGCCAATCCTGTAAAAACCAA...TCCTGCATTCAGCAAAGTGGCATAAAAATCACCTGGTAAGTATGCAGCACATTG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENST00000379551.2
ENST00000407149.7
ENST00000446965.2
ENST00000505123.5
CDS-3UTR CAA 90 bp TTACCAGGTGATTTTTATGCCACTTTGCTGAATGCAGGATTAATATATTTGGGCAGCTGGACTGGAGCCTaGTCCAAGTTACTGTTGGGT +
Preference number: 5 (lower is better)
Translates to: LPGDFYATLLNAGLIYLGSWTGA*SKLLLG
Trigger: ACCCAACAGTAACTTGGACAAGGCTCCAGTCCAGCT...GCCCAAATATATTAATCCTGCATTCAGCAAAGTGGCATAAAAATCACCTGGTAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENST00000379551.2
ENST00000407149.7
ENST00000446965.2
ENST00000505123.5
CDS-3UTR CAA 90 bp GCATACTTACCAGGTGATTTTTATGCCACTTTGCTGAATGCAGGATTAATATATACCTCCTTAAGTTCCTaGGCCACGTCCTTCAGGTCG +
Preference number: 5 (lower is better)
Translates to: AYLPGDFYATLLNAGLIYTSLSS*ATSFRS
Trigger: CGACCTGAAGGACGTGGCCAAGGAACTTAAGGAGGT...ATATATTAATCCTGCATTCAGCAAAGTGGCATAAAAATCACCTGGTAAGTATGC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000407149.7
CDS-3UTR CAA 90 bp CAATGTGCTGCATACTTACCAGGTGATTTTTATGCCACTTTGCTGAATGCAGGAATTGGTTCCTTTTATTaGGGAGTGCCTGGCATTACG +
Preference number: 5 (lower is better)
Translates to: QCAAYLPGDFYATLLNAGIGSFY*GVPGIT
Trigger: CGTAATGCCAGGCACTCCCAAATAAAAGGAACCAAT...TCCTGCATTCAGCAAAGTGGCATAAAAATCACCTGGTAAGTATGCAGCACATTG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000505123.5
CDS-3UTR CAA 90 bp TTACCAGGTGATTTTTATGCCACTTTGCTGAATGCAGGATTAATATATTTGGGCTTCAGCGTGTCCGTTTaGGAGCTGTCAGTCATCTCA +
Preference number: 5 (lower is better)
Translates to: LPGDFYATLLNAGLIYLGFSVSV*ELSVIS
Trigger: TGAGATGACTGACAGCTCCAAAACGGACACGCTGAA...GCCCAAATATATTAATCCTGCATTCAGCAAAGTGGCATAAAAATCACCTGGTAA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENST00000379551.2
ENST00000407149.7
ENST00000446965.2
ENST00000505123.5
CDS-3UTR CAA 90 bp GCATACTTACCAGGTGATTTTTATGCCACTTTGCTGAATGCAGGATTAATATATCTAGGCTGGAGGCTGTaGTGCCACTTGAGCTACTAT +
Preference number: 5 (lower is better)
Translates to: AYLPGDFYATLLNAGLIYLGWRL*CHLSYY
Trigger: ATAGTAGCTCAAGTGGCACAACAGCCTCCAGCCTAG...ATATATTAATCCTGCATTCAGCAAAGTGGCATAAAAATCACCTGGTAAGTATGC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENST00000379551.2
ENST00000407149.7
ENST00000446965.2
ENST00000505123.5
CDS-3UTR CAA 90 bp TTACCAGGTGATTTTTATGCCACTTTGCTGAATGCAGGATTAATATATTTGGGCTTACAGGATTGGCAGTaGGAACCACCCTTTTGGGGT +
Preference number: 5 (lower is better)
Translates to: LPGDFYATLLNAGLIYLGLQDWQ*EPPFWG
Trigger: ACCCCAAAAGGGTGGTTCCAACTGCCAATCCTGTAA...GCCCAAATATATTAATCCTGCATTCAGCAAAGTGGCATAAAAATCACCTGGTAA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENST00000379551.2
ENST00000407149.7
ENST00000446965.2
ENST00000505123.5
CDS-3UTR CAA 90 bp CAATGTGCTGCATACTTACCAGGTGATTTTTATGCCACTTTGCTGAATGCAGGATCTCCATTTGGAATTTaGTTAGGTCCACCTGGTAAG +
Preference number: 5 (lower is better)
Translates to: QCAAYLPGDFYATLLNAGSPFGI*LGPPGK
Trigger: CTTACCAGGTGGACCTAACAAAATTCCAAATGGAGA...TCCTGCATTCAGCAAAGTGGCATAAAAATCACCTGGTAAGTATGCAGCACATTG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENST00000379551.2
ENST00000407149.7
ENST00000446965.2
ENST00000505123.5
CDS-3UTR CAA 90 bp CAATGTGCTGCATACTTACCAGGTGATTTTTATGCCACTTTGCTGAATGCAGGATTGTCCAAGTTACTGTaGGGTATGCAGCAGATATCT +
Preference number: 5 (lower is better)
Translates to: QCAAYLPGDFYATLLNAGLSKLL*GMQQIS
Trigger: AGATATCTGCTGCATACCCAACAGTAACTTGGACAA...TCCTGCATTCAGCAAAGTGGCATAAAAATCACCTGGTAAGTATGCAGCACATTG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENST00000379551.2
ENST00000407149.7
ENST00000446965.2
ENST00000505123.5
CDS-3UTR CAA 90 bp GCATACTTACCAGGTGATTTTTATGCCACTTTGCTGAATGCAGGATTAATATATAGCTGGACTGGAGCCTaGTCCAAGTTACTGTTGGGT +
Preference number: 5 (lower is better)
Translates to: AYLPGDFYATLLNAGLIYSWTGA*SKLLLG
Trigger: ACCCAACAGTAACTTGGACAAGGCTCCAGTCCAGCT...ATATATTAATCCTGCATTCAGCAAAGTGGCATAAAAATCACCTGGTAAGTATGC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENST00000379551.2
ENST00000407149.7
ENST00000446965.2
ENST00000505123.5
CDS-3UTR CAA 90 bp TTACCAGGTGATTTTTATGCCACTTTGCTGAATGCAGGATTAATATATTTGGGCTCCTCCACGATGATCTaGATCTGTTCCTTCACCTTG +
Preference number: 5 (lower is better)
Translates to: LPGDFYATLLNAGLIYLGSSTMI*ICSFTL
Trigger: CAAGGTGAAGGAACAGATCAAGATCATCGTGGAGGA...GCCCAAATATATTAATCCTGCATTCAGCAAAGTGGCATAAAAATCACCTGGTAA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000379551.2
ENST00000407149.7
CDS-3UTR CAA 90 bp GCATACTTACCAGGTGATTTTTATGCCACTTTGCTGAATGCAGGATTAATATATAGGCTGTTGTGCCACTaGAGCTACTATTCAGCGTGT +
Preference number: 5 (lower is better)
Translates to: AYLPGDFYATLLNAGLIYRLLCH*SYYSAC
Trigger: ACACGCTGAATAGTAGCTCAAGTGGCACAACAGCCT...ATATATTAATCCTGCATTCAGCAAAGTGGCATAAAAATCACCTGGTAAGTATGC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENST00000379551.2
ENST00000407149.7
ENST00000446965.2
ENST00000505123.5
CDS-3UTR CAA 90 bp GCATACTTACCAGGTGATTTTTATGCCACTTTGCTGAATGCAGGATTAATATATGTTGGAACCACCCTTTaGGGGTCTTCACACTTCACA +
Preference number: 5 (lower is better)
Translates to: AYLPGDFYATLLNAGLIYVGTTL*GSSHFT
Trigger: TGTGAAGTGTGAAGACCCCAAAAGGGTGGTTCCAAC...ATATATTAATCCTGCATTCAGCAAAGTGGCATAAAAATCACCTGGTAAGTATGC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000379551.2
ENST00000407149.7
ENST00000446965.2
ENST00000505123.5
CDS-3UTR CAA 90 bp GCATACTTACCAGGTGATTTTTATGCCACTTTGCTGAATGCAGGATTAATATATTTACAGGATTGGCAGTaGGAACCACCCTTTTGGGGT +
Preference number: 5 (lower is better)
Translates to: AYLPGDFYATLLNAGLIYLQDWQ*EPPFWG
Trigger: ACCCCAAAAGGGTGGTTCCAACTGCCAATCCTGTAA...ATATATTAATCCTGCATTCAGCAAAGTGGCATAAAAATCACCTGGTAAGTATGC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENST00000379551.2
ENST00000407149.7
ENST00000446965.2
ENST00000505123.5
CDS-3UTR CAA 90 bp TTACCAGGTGATTTTTATGCCACTTTGCTGAATGCAGGATTAATATATTTGGGCCGTAGAAGGGTGCCATaGGTTTTTACAGGATTGGCA +
Preference number: 5 (lower is better)
Translates to: LPGDFYATLLNAGLIYLGRRRVP*VFTGLA
Trigger: TGCCAATCCTGTAAAAACCAATGGCACCCTTCTACG...GCCCAAATATATTAATCCTGCATTCAGCAAAGTGGCATAAAAATCACCTGGTAA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENST00000379551.2
ENST00000407149.7
ENST00000446965.2
ENST00000505123.5
CDS-3UTR CAA 90 bp GCATACTTACCAGGTGATTTTTATGCCACTTTGCTGAATGCAGGATTAATATATTTTCCTGATGTCCTGTaGTCACTGTATGCCTGCAGC +
Preference number: 5 (lower is better)
Translates to: AYLPGDFYATLLNAGLIYFPDVL*SLYACS
Trigger: GCTGCAGGCATACAGTGACAACAGGACATCAGGAAA...ATATATTAATCCTGCATTCAGCAAAGTGGCATAAAAATCACCTGGTAAGTATGC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000446965.2
ENST00000505123.5
CDS-3UTR CAA 90 bp GCATACTTACCAGGTGATTTTTATGCCACTTTGCTGAATGCAGGATTAATATATTCCTCCACGATGATCTaGATCTGTTCCTTCACCTTG +
Preference number: 5 (lower is better)
Translates to: AYLPGDFYATLLNAGLIYSSTMI*ICSFTL
Trigger: CAAGGTGAAGGAACAGATCAAGATCATCGTGGAGGA...ATATATTAATCCTGCATTCAGCAAAGTGGCATAAAAATCACCTGGTAAGTATGC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000379551.2
ENST00000407149.7
CDS-3UTR CAA 90 bp TTACCAGGTGATTTTTATGCCACTTTGCTGAATGCAGGATTAATATATTTGGGCTTGGTTTTTACAGGATaGGCAGTTGGAACCACCCTT +
Preference number: 5 (lower is better)
Translates to: LPGDFYATLLNAGLIYLGLVFTG*AVGTTL
Trigger: AAGGGTGGTTCCAACTGCCAATCCTGTAAAAACCAA...GCCCAAATATATTAATCCTGCATTCAGCAAAGTGGCATAAAAATCACCTGGTAA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENST00000379551.2
ENST00000407149.7
ENST00000446965.2
ENST00000505123.5
CDS-3UTR CAA 90 bp GCATACTTACCAGGTGATTTTTATGCCACTTTGCTGAATGCAGGATTAATATATCGTAGAAGGGTGCCATaGGTTTTTACAGGATTGGCA +
Preference number: 5 (lower is better)
Translates to: AYLPGDFYATLLNAGLIYRRRVP*VFTGLA
Trigger: TGCCAATCCTGTAAAAACCAATGGCACCCTTCTACG...ATATATTAATCCTGCATTCAGCAAAGTGGCATAAAAATCACCTGGTAAGTATGC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENST00000379551.2
ENST00000407149.7
ENST00000446965.2
ENST00000505123.5
CDS-3UTR CAA 90 bp GCATACTTACCAGGTGATTTTTATGCCACTTTGCTGAATGCAGGATTAATATATTTGGTTTTTACAGGATaGGCAGTTGGAACCACCCTT +
Preference number: 5 (lower is better)
Translates to: AYLPGDFYATLLNAGLIYLVFTG*AVGTTL
Trigger: AAGGGTGGTTCCAACTGCCAATCCTGTAAAAACCAA...ATATATTAATCCTGCATTCAGCAAAGTGGCATAAAAATCACCTGGTAAGTATGC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENST00000379551.2
ENST00000407149.7
ENST00000446965.2
ENST00000505123.5
CDS-3UTR CAA 90 bp TTACCAGGTGATTTTTATGCCACTTTGCTGAATGCAGGATTAATATATTTGGGCTCTCCATTTGGAATTTaGTTAGGTCCACCTGGTAAG +
Preference number: 5 (lower is better)
Translates to: LPGDFYATLLNAGLIYLGSPFGI*LGPPGK
Trigger: CTTACCAGGTGGACCTAACAAAATTCCAAATGGAGA...GCCCAAATATATTAATCCTGCATTCAGCAAAGTGGCATAAAAATCACCTGGTAA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENST00000379551.2
ENST00000407149.7
ENST00000446965.2
ENST00000505123.5
CDS-3UTR CAA 90 bp GCATACTTACCAGGTGATTTTTATGCCACTTTGCTGAATGCAGGATTAATATATTTGTCCAAGTTACTGTaGGGTATGCAGCAGATATCT +
Preference number: 5 (lower is better)
Translates to: AYLPGDFYATLLNAGLIYLSKLL*GMQQIS
Trigger: AGATATCTGCTGCATACCCAACAGTAACTTGGACAA...ATATATTAATCCTGCATTCAGCAAAGTGGCATAAAAATCACCTGGTAAGTATGC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENST00000379551.2
ENST00000407149.7
ENST00000446965.2
ENST00000505123.5
CDS-3UTR CAA 90 bp TTACCAGGTGATTTTTATGCCACTTTGCTGAATGCAGGATTAATATATTTGGGCTGGGCTTTTTATTGCTaGAGTAGAAAGTGCTCATTA +
Preference number: 5 (lower is better)
Translates to: LPGDFYATLLNAGLIYLGWAFYC*SRKCSL
Trigger: TAATGAGCACTTTCTACTCAAGCAATAAAAAGCCCA...GCCCAAATATATTAATCCTGCATTCAGCAAAGTGGCATAAAAATCACCTGGTAA
37% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENST00000379551.2
ENST00000407149.7
ENST00000446965.2
ENST00000505123.5
CDS-3UTR CAA 90 bp GCATACTTACCAGGTGATTTTTATGCCACTTTGCTGAATGCAGGATTAATATATTGGGCTTTTTATTGCTaGAGTAGAAAGTGCTCATTA +
Preference number: 5 (lower is better)
Translates to: AYLPGDFYATLLNAGLIYWAFYC*SRKCSL
Trigger: TAATGAGCACTTTCTACTCAAGCAATAAAAAGCCCA...ATATATTAATCCTGCATTCAGCAAAGTGGCATAAAAATCACCTGGTAAGTATGC
36% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENST00000379551.2
ENST00000407149.7
ENST00000446965.2
ENST00000505123.5
CDS GCA 72 bp GATCTTGATCTGTTCCTTCACCTTGGTTTTGGAGGCTaGCGGCGGTCCCTCGGCTGGACAGGACGAGGAGGG +
Preference number: 6 (lower is better)
Translates to: DLDLFLHLGFGG*RRSLGWTGRGG
Trigger: CCCTCCTCGTCCTGTCCAGCCGAGGGACCGCCGGCAGCCTCCAAAACCAAGGTGAAGGAACAGATCAAGATC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000379551.2
ENST00000407149.7
CDS CAA 90 bp TCCAAATCCTCCACGATGATCTTGATCTGTTCCTTCACCTTGGTTTaGGAGGCTGCCGGCGGTCCCTCGGCTGGACAGGACGAGGAGGGG +
Preference number: 6 (lower is better)
Translates to: SKSSTMILICSFTLV*EAAGGPSAGQDEEG
Trigger: CCCCTCCTCGTCCTGTCCAGCCGAGGGACCGCCGGCAGCCTCCAAAACCAAGGTGAAGGAACAGATCAAGATCATCGTGGAGGATTTGGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000379551.2
ENST00000407149.7
CDS GCA 72 bp TGGCTTTCTCAGGACCGTGAGGATAGCAGACGGGTGTaGTGGGGGTTTAATAAGCGGTGCATTAGCCTGCAC +
Preference number: 6 (lower is better)
Translates to: WLSQDREDSRRV*WGFNKRCISLH
Trigger: GTGCAGGCTAATGCACCGCTTATTAAACCCCCAGCACACCCGTCTGCTATCCTCACGGTCCTGAGAAAGCCA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENST00000379551.2
ENST00000407149.7
ENST00000446965.2
ENST00000505123.5
ENST00000509923.1
CDS CAA 72 bp AAATCCTCCACGATGATCTTGATCTGTTCCTTCACCTaGGTTTTGGAGGCTGCCGGCGGTCCCTCGGCTGGA +
Preference number: 6 (lower is better)
Translates to: KSSTMILICSFT*VLEAAGGPSAG
Trigger: TCCAGCCGAGGGACCGCCGGCAGCCTCCAAAACCAAGGTGAAGGAACAGATCAAGATCATCGTGGAGGATTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000379551.2
ENST00000407149.7
CDS CAA 90 bp ACTAATTCCAAATCCTCCACGATGATCTTGATCTGTTCCTTCACCTaGGTTTTGGAGGCTGCCGGCGGTCCCTCGGCTGGACAGGACGAG +
Preference number: 6 (lower is better)
Translates to: TNSKSSTMILICSFT*VLEAAGGPSAGQDE
Trigger: CTCGTCCTGTCCAGCCGAGGGACCGCCGGCAGCCTCCAAAACCAAGGTGAAGGAACAGATCAAGATCATCGTGGAGGATTTGGAATTAGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000379551.2
ENST00000407149.7
CDS CCA 72 bp GTCTTCACACTTCACAGGTGTCAACCTTGGAGGAGGTaGTGGAGGGTTTGGCTTTCTCAGGACCGTGAGGAT +
Preference number: 6 (lower is better)
Translates to: VFTLHRCQPWRR*WRVWLSQDRED
Trigger: ATCCTCACGGTCCTGAGAAAGCCAAACCCTCCACCACCTCCTCCAAGGTTGACACCTGTGAAGTGTGAAGAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENST00000379551.2
ENST00000407149.7
ENST00000446965.2
ENST00000505123.5
ENST00000509923.1
CDS CAA 72 bp TGGGCAACAGAGTGGGACTTCATCTCCTTAAGTTCCTaGGCCACGTCCTTCAGGTCGCCCAGGACTAATTCC +
Preference number: 6 (lower is better)
Translates to: WATEWDFISLSS*ATSFRSPRTNS
Trigger: GGAATTAGTCCTGGGCGACCTGAAGGACGTGGCCAAGGAACTTAAGGAGATGAAGTCCCACTCTGTTGCCCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000379551.2
CDS CAA 90 bp CTGGAGGCTGTTGTGCCACTTGAGCTACTATTCAGCGTGTCCGTTTaGGAGCTGTCAGTCATCTCATCCTCCAGCTGTAGGTCAGAGGTC +
Preference number: 6 (lower is better)
Translates to: LEAVVPLELLFSVSV*ELSVISSSSCRSEV
Trigger: GACCTCTGACCTACAGCTGGAGGATGAGATGACTGACAGCTCCAAAACGGACACGCTGAATAGTAGCTCAAGTGGCACAACAGCCTCCAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENST00000379551.2
ENST00000407149.7
ENST00000446965.2
ENST00000505123.5
ENST00000509923.1
CDS CCA 72 bp CTTTCTCAGGACCGTGAGGATAGCAGACGGGTGTGCTaGGGGTTTAATAAGCGGTGCATTAGCCTGCACTTT +
Preference number: 6 (lower is better)
Translates to: LSQDREDSRRVC*GFNKRCISLHF
Trigger: AAAGTGCAGGCTAATGCACCGCTTATTAAACCCCCAGCACACCCGTCTGCTATCCTCACGGTCCTGAGAAAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENST00000379551.2
ENST00000407149.7
ENST00000446965.2
ENST00000505123.5
ENST00000509923.1
CDS CAA 90 bp GACGGGTGTGCTGGGGGTTTAATAAGCGGTGCATTAGCCTGCACTTaGATCTTCTCTAGGCTGGAGGCTGTTGTGCCACTTGAGCTACTA +
Preference number: 6 (lower is better)
Translates to: DGCAGGLISGALACT*IFSRLEAVVPLELL
Trigger: TAGTAGCTCAAGTGGCACAACAGCCTCCAGCCTAGAGAAGATCAAAGTGCAGGCTAATGCACCGCTTATTAAACCCCCAGCACACCCGTC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENST00000379551.2
ENST00000407149.7
ENST00000446965.2
ENST00000505123.5
ENST00000509923.1
CDS CAA 90 bp AGGGTGCCATTGGTTTTTACAGGATTGGCAGTTGGAACCACCCTTTaGGGGTCTTCACACTTCACAGGTGTCAACCTTGGAGGAGGTGGT +
Preference number: 6 (lower is better)
Translates to: RVPLVFTGLAVGTTL*GSSHFTGVNLGGGG
Trigger: ACCACCTCCTCCAAGGTTGACACCTGTGAAGTGTGAAGACCCCAAAAGGGTGGTTCCAACTGCCAATCCTGTAAAAACCAATGGCACCCT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENST00000379551.2
ENST00000407149.7
ENST00000446965.2
ENST00000505123.5
ENST00000509923.1
CDS CAA 72 bp GTTGTGCCACTTGAGCTACTATTCAGCGTGTCCGTTTaGGAGCTGTCAGTCATCTCATCCTCCAGCTGTAGG +
Preference number: 6 (lower is better)
Translates to: VVPLELLFSVSV*ELSVISSSSCR
Trigger: CCTACAGCTGGAGGATGAGATGACTGACAGCTCCAAAACGGACACGCTGAATAGTAGCTCAAGTGGCACAAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENST00000379551.2
ENST00000407149.7
ENST00000446965.2
ENST00000505123.5
ENST00000509923.1
CDS CCA 72 bp TTGTGCCACTTGAGCTACTATTCAGCGTGTCCGTTTTaGAGCTGTCAGTCATCTCATCCTCCAGCTGTAGGT +
Preference number: 6 (lower is better)
Translates to: LCHLSYYSACPF*SCQSSHPPAVG
Trigger: ACCTACAGCTGGAGGATGAGATGACTGACAGCTCCAAAACGGACACGCTGAATAGTAGCTCAAGTGGCACAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENST00000379551.2
ENST00000407149.7
ENST00000446965.2
ENST00000505123.5
ENST00000509923.1
CDS CAA 72 bp CCACCTGGTAAGCCTCCATTTCGTAGAAGGGTGCCATaGGTTTTTACAGGATTGGCAGTTGGAACCACCCTT +
Preference number: 6 (lower is better)
Translates to: PPGKPPFRRRVP*VFTGLAVGTTL
Trigger: AAGGGTGGTTCCAACTGCCAATCCTGTAAAAACCAATGGCACCCTTCTACGAAATGGAGGCTTACCAGGTGG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENST00000379551.2
ENST00000407149.7
ENST00000446965.2
ENST00000505123.5
ENST00000509923.1
CDS CCA 72 bp TGGTTTTTACAGGATTGGCAGTTGGAACCACCCTTTTaGGGTCTTCACACTTCACAGGTGTCAACCTTGGAG +
Preference number: 6 (lower is better)
Translates to: WFLQDWQLEPPF*GLHTSQVSTLE
Trigger: CTCCAAGGTTGACACCTGTGAAGTGTGAAGACCCCAAAAGGGTGGTTCCAACTGCCAATCCTGTAAAAACCA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENST00000379551.2
ENST00000407149.7
ENST00000446965.2
ENST00000505123.5
ENST00000509923.1
CDS CCA 72 bp CACCTGGTAAGCCTCCATTTCGTAGAAGGGTGCCATTaGTTTTTACAGGATTGGCAGTTGGAACCACCCTTT +
Preference number: 6 (lower is better)
Translates to: HLVSLHFVEGCH*FLQDWQLEPPF
Trigger: AAAGGGTGGTTCCAACTGCCAATCCTGTAAAAACCAATGGCACCCTTCTACGAAATGGAGGCTTACCAGGTG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENST00000379551.2
ENST00000407149.7
ENST00000446965.2
ENST00000505123.5
ENST00000509923.1
CDS TCA 72 bp ATGACACAGCACCTAACAAACTTCTTGGGCATTTCCTaGTGTCCTGTTGTCACTGTATGCCTGCAGCACTGT +
Preference number: 6 (lower is better)
Translates to: MTQHLTNFLGIS*CPVVTVCLQHC
Trigger: ACAGTGCTGCAGGCATACAGTGACAACAGGACATCAGGAAATGCCCAAGAAGTTTGTTAGGTGCTGTGTCAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000446965.2
ENST00000505123.5
CDS CCA 72 bp TCTGTCTTTTTCAGGTCTATGCATCAGAAGCTGGACTaGAGCCTTGTCCAAGTTACTGTTGGGTATGCAGCA +
Preference number: 6 (lower is better)
Translates to: SVFFRSMHQKLD*SLVQVTVGYAA
Trigger: TGCTGCATACCCAACAGTAACTTGGACAAGGCTCCAGTCCAGCTTCTGATGCATAGACCTGAAAAAGACAGA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENST00000379551.2
ENST00000407149.7
ENST00000446965.2
ENST00000505123.5
ENST00000509923.1
CDS CCA 72 bp GGACATCTGTCTTTTTCAGGTCTATGCATCAGAAGCTaGACTGGAGCCTTGTCCAAGTTACTGTTGGGTATG +
Preference number: 6 (lower is better)
Translates to: GHLSFSGLCIRS*TGALSKLLLGM
Trigger: CATACCCAACAGTAACTTGGACAAGGCTCCAGTCCAGCTTCTGATGCATAGACCTGAAAAAGACAGATGTCC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENST00000379551.2
ENST00000407149.7
ENST00000446965.2
ENST00000505123.5
ENST00000509923.1
CDS CAA 72 bp TTGGTTTTTACAGGATTGGCAGTTGGAACCACCCTTTaGGGGTCTTCACACTTCACAGGTGTCAACCTTGGA +
Preference number: 6 (lower is better)
Translates to: LVFTGLAVGTTL*GSSHFTGVNLG
Trigger: TCCAAGGTTGACACCTGTGAAGTGTGAAGACCCCAAAAGGGTGGTTCCAACTGCCAATCCTGTAAAAACCAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENST00000379551.2
ENST00000407149.7
ENST00000446965.2
ENST00000505123.5
ENST00000509923.1
CDS CAA 90 bp CATCTGTCTTTTTCAGGTCTATGCATCAGAAGCTGGACTGGAGCCTaGTCCAAGTTACTGTTGGGTATGCAGCAGATATCTCCATTTGGA +
Preference number: 6 (lower is better)
Translates to: HLSFSGLCIRSWTGA*SKLLLGMQQISPFG
Trigger: TCCAAATGGAGATATCTGCTGCATACCCAACAGTAACTTGGACAAGGCTCCAGTCCAGCTTCTGATGCATAGACCTGAAAAAGACAGATG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENST00000379551.2
ENST00000407149.7
ENST00000446965.2
ENST00000505123.5
ENST00000509923.1
CDS CAA 72 bp TTTTCAGGTCTATGCATCAGAAGCTGGACTGGAGCCTaGTCCAAGTTACTGTTGGGTATGCAGCAGATATCT +
Preference number: 6 (lower is better)
Translates to: FSGLCIRSWTGA*SKLLLGMQQIS
Trigger: AGATATCTGCTGCATACCCAACAGTAACTTGGACAAGGCTCCAGTCCAGCTTCTGATGCATAGACCTGAAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENST00000379551.2
ENST00000407149.7
ENST00000446965.2
ENST00000505123.5
ENST00000509923.1
CDS CCA 72 bp TCAGAAGCTGGACTGGAGCCTTGTCCAAGTTACTGTTaGGTATGCAGCAGATATCTCCATTTGGAATTTTGT +
Preference number: 6 (lower is better)
Translates to: SEAGLEPCPSYC*VCSRYLHLEFC
Trigger: ACAAAATTCCAAATGGAGATATCTGCTGCATACCCAACAGTAACTTGGACAAGGCTCCAGTCCAGCTTCTGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENST00000379551.2
ENST00000407149.7
ENST00000446965.2
ENST00000505123.5
ENST00000509923.1
CDS CAA 72 bp ATCAGAAGCTGGACTGGAGCCTTGTCCAAGTTACTGTaGGGTATGCAGCAGATATCTCCATTTGGAATTTTG +
Preference number: 6 (lower is better)
Translates to: IRSWTGALSKLL*GMQQISPFGIL
Trigger: CAAAATTCCAAATGGAGATATCTGCTGCATACCCAACAGTAACTTGGACAAGGCTCCAGTCCAGCTTCTGAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENST00000379551.2
ENST00000407149.7
ENST00000446965.2
ENST00000505123.5
ENST00000509923.1
CDS TCA 72 bp TTCTGGAATGACCTGCTAGAGAATGCATGCATCAGTTaGTTGGTTCCTTTTATTTGGGAGTGCCTGGCATTA +
Preference number: 6 (lower is better)
Translates to: FWNDLLENACIS*LVPFIWECLAL
Trigger: TAATGCCAGGCACTCCCAAATAAAAGGAACCAATCAACTGATGCATGCATTCTCTAGCAGGTCATTCCAGAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000505123.5