RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for PRPF38A (Homo sapiens)

Ensembl gene IDs: ENSG00000134748

Ensembl transcript IDs: ENST00000257181.10

Found 60 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp CTTGGAACACATCTCCCTTACTTTCTTAGTATTAAAAGGCGATTGTaGCCTATGGCAAAGCTTTTAAGTCAGTGTATTTCAAATTATTGG +
Preference number: 1 (lower is better)
Translates to: LGTHLPYFLSIKRRL*PMAKLLSQCISNYW
Trigger: CCAATAATTTGAAATACACTGACTTAAAAGCTTTGCCATAGGGCACAATCGCCTTTTAATACTAAGAAAGTAAGGGAGATGTGTTCCAAG
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000257181.10
3UTR CCA 90 bp TTGAGCAGGTGGAGAATTTCTGTCACATTAACCTTTTTGAGGGAGTaGGCAATCTGTGATCGTTCTTTTCTAAATAATGCTTATTTAAAC +
Preference number: 1 (lower is better)
Translates to: LSRWRISVTLTFLRE*AICDRSFLNNAYLN
Trigger: GTTTAAATAAGCATTATTTAGAAAAGAACGATCACAGATTGCCCACTCCCTCAAAAAGGTTAATGTGACAGAAATTCTCCACCTGCTCAA
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000257181.10
3UTR TCA 90 bp AAAAATCATTCAAAAGTTCATCAGCCAGAAAGAAGTACTATCTGGTaGACTTCATTCATTCCAACCATCTCTCTTAATCATACAGGCACA +
Preference number: 1 (lower is better)
Translates to: KNHSKVHQPERSTIW*TSFIPTISLNHTGT
Trigger: TGTGCCTGTATGATTAAGAGAGATGGTTGGAATGAATGAAGTTCACCAGATAGTACTTCTTTCTGGCTGATGAACTTTTGAATGATTTTT
36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000257181.10
3UTR-3UTR GCA 90 bp AATGAGCTTGAAGTTGGGTTGTTAATATTGGAACCCTCTCACCAAACCCATTCTTTGCCCAGGCTGAAGTaGAGTGGCACGATCTCAGCT +
Preference number: 2 (lower is better)
Translates to: NELEVGLLILEPSHQTHSLPRLK*SGTISA
Trigger: AGCTGAGATCGTGCCACTGCACTTCAGCCTGGGCAA...AGAATGGGTTTGGTGAGAGGGTTCCAATATTAACAACCCAACTTCAAGCTCATT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000257181.10
3UTR-3UTR TCA 90 bp AATGAGCTTGAAGTTGGGTTGTTAATATTGGAACCCTCTCACCAAACCCATTCTAGGCAAGCACATAGATaGCAGAAAGAGCCTTACAGC +
Preference number: 2 (lower is better)
Translates to: NELEVGLLILEPSHQTHSRQAHR*QKEPYS
Trigger: GCTGTAAGGCTCTTTCTGTCATCTATGTGCTTGCCT...AGAATGGGTTTGGTGAGAGGGTTCCAATATTAACAACCCAACTTCAAGCTCATT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000257181.10
3UTR-3UTR GCA 90 bp AATGAGCTTGAAGTTGGGTTGTTAATATTGGAACCCTCTCACCAAACCCATTCTAGGCATGCGCCACCATaGCCGGCTAATTTTGTATTT +
Preference number: 2 (lower is better)
Translates to: NELEVGLLILEPSHQTHSRHAPP*PANFVF
Trigger: AAATACAAAATTAGCCGGGCATGGTGGCGCATGCCT...AGAATGGGTTTGGTGAGAGGGTTCCAATATTAACAACCCAACTTCAAGCTCATT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000257181.10
3UTR-3UTR GCA 90 bp AATGAGCTTGAAGTTGGGTTGTTAATATTGGAACCCTCTCACCAAACCCATTCTTGCTGGGACTACAGTTaGAGAAGTCATTCCATCACT +
Preference number: 2 (lower is better)
Translates to: NELEVGLLILEPSHQTHSCWDYS*RSHSIT
Trigger: AGTGATGGAATGACTTCTGCAACTGTAGTCCCAGCA...AGAATGGGTTTGGTGAGAGGGTTCCAATATTAACAACCCAACTTCAAGCTCATT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000257181.10
3UTR-3UTR CCA 90 bp AATGAGCTTGAAGTTGGGTTGTTAATATTGGAACCCTCTCACCAAACCCATTCTGCTATTGATTGGCTGTaGTACCTCAATTTTGGTCCA +
Preference number: 2 (lower is better)
Translates to: NELEVGLLILEPSHQTHSAIDWL*YLNFGP
Trigger: TGGACCAAAATTGAGGTACCACAGCCAATCAATAGC...AGAATGGGTTTGGTGAGAGGGTTCCAATATTAACAACCCAACTTCAAGCTCATT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000257181.10
3UTR-3UTR TCA 90 bp AATGAGCTTGAAGTTGGGTTGTTAATATTGGAACCCTCTCACCAAACCCATTCTTACTCCTTTGATCTTTaGATAACAGCAGCAGCACAA +
Preference number: 2 (lower is better)
Translates to: NELEVGLLILEPSHQTHSYSFDL*ITAAAQ
Trigger: TTGTGCTGCTGCTGTTATTCAAAGATCAAAGGAGTA...AGAATGGGTTTGGTGAGAGGGTTCCAATATTAACAACCCAACTTCAAGCTCATT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000257181.10
3UTR-3UTR GCA 90 bp AATGAGCTTGAAGTTGGGTTGTTAATATTGGAACCCTCTCACCAAACCCATTCTATGCATTATTTCTTTTaGCCCTTGGAACACATCTCC +
Preference number: 2 (lower is better)
Translates to: NELEVGLLILEPSHQTHSMHYFF*PLEHIS
Trigger: GGAGATGTGTTCCAAGGGGCAAAAGAAATAATGCAT...AGAATGGGTTTGGTGAGAGGGTTCCAATATTAACAACCCAACTTCAAGCTCATT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000257181.10
3UTR-3UTR CCA 90 bp AGTATTAAAAGGCGATTGTGCCCTATGGCAAAGCTTTTAAGTCAGTGTATTTCATACTGGATGACAGCTTaGTTGGTCCATGGGTCATTT +
Preference number: 2 (lower is better)
Translates to: SIKRRLCPMAKLLSQCISYWMTA*LVHGSF
Trigger: AAATGACCCATGGACCAACCAAGCTGTCATCCAGTA...TGAAATACACTGACTTAAAAGCTTTGCCATAGGGCACAATCGCCTTTTAATACT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000257181.10
3UTR-3UTR CCA 90 bp AATGAGCTTGAAGTTGGGTTGTTAATATTGGAACCCTCTCACCAAACCCATTCTTTTCCTGCTATTGATTaGCTGTGGTACCTCAATTTT +
Preference number: 2 (lower is better)
Translates to: NELEVGLLILEPSHQTHSFPAID*LWYLNF
Trigger: AAAATTGAGGTACCACAGCCAATCAATAGCAGGAAA...AGAATGGGTTTGGTGAGAGGGTTCCAATATTAACAACCCAACTTCAAGCTCATT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000257181.10
3UTR-3UTR TCA 90 bp AGTATTAAAAGGCGATTGTGCCCTATGGCAAAGCTTTTAAGTCAGTGTATTTCATCTGGGAAGTCTTATTaGCAGATTCCACCATTACTT +
Preference number: 2 (lower is better)
Translates to: SIKRRLCPMAKLLSQCISSGKSY*QIPPLL
Trigger: AAGTAATGGTGGAATCTGTCAATAAGACTTCCCAGA...TGAAATACACTGACTTAAAAGCTTTGCCATAGGGCACAATCGCCTTTTAATACT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000257181.10
3UTR-3UTR GCA 90 bp AATGAGCTTGAAGTTGGGTTGTTAATATTGGAACCCTCTCACCAAACCCATTCTCACCAGAATTCACTTTaGATAGTAAGTATTCTTTCC +
Preference number: 2 (lower is better)
Translates to: NELEVGLLILEPSHQTHSHQNSL*IVSILS
Trigger: GGAAAGAATACTTACTATGCAAAGTGAATTCTGGTG...AGAATGGGTTTGGTGAGAGGGTTCCAATATTAACAACCCAACTTCAAGCTCATT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000257181.10
3UTR-3UTR CCA 90 bp AGTATTAAAAGGCGATTGTGCCCTATGGCAAAGCTTTTAAGTCAGTGTATTTCAATTTTAAGAGTGTACTaGATGACAGCTTGGTTGGTC +
Preference number: 2 (lower is better)
Translates to: SIKRRLCPMAKLLSQCISILRVY*MTAWLV
Trigger: GACCAACCAAGCTGTCATCCAGTACACTCTTAAAAT...TGAAATACACTGACTTAAAAGCTTTGCCATAGGGCACAATCGCCTTTTAATACT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000257181.10
3UTR-3UTR GCA 90 bp AGTATTAAAAGGCGATTGTGCCCTATGGCAAAGCTTTTAAGTCAGTGTATTTCACGATATCTACAGACATaGAACATGTCTTACTCTTAC +
Preference number: 2 (lower is better)
Translates to: SIKRRLCPMAKLLSQCISRYLQT*NMSYSY
Trigger: GTAAGAGTAAGACATGTTGCATGTCTGTAGATATCG...TGAAATACACTGACTTAAAAGCTTTGCCATAGGGCACAATCGCCTTTTAATACT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000257181.10
3UTR-3UTR CCA 90 bp AGTATTAAAAGGCGATTGTGCCCTATGGCAAAGCTTTTAAGTCAGTGTATTTCAGTTACTAAAATTTATTaGGCTTTGTGCGTGGGTTTA +
Preference number: 2 (lower is better)
Translates to: SIKRRLCPMAKLLSQCISVTKIY*ALCVGL
Trigger: TAAACCCACGCACAAAGCCCAATAAATTTTAGTAAC...TGAAATACACTGACTTAAAAGCTTTGCCATAGGGCACAATCGCCTTTTAATACT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000257181.10
3UTR-3UTR CAA 90 bp AATGAGCTTGAAGTTGGGTTGTTAATATTGGAACCCTCTCACCAAACCCATTCTGCCTTACAGCAAGGTTaGTCCTCAAGCTCCATCTCC +
Preference number: 3 (lower is better)
Translates to: NELEVGLLILEPSHQTHSALQQG*SSSSIS
Trigger: GGAGATGGAGCTTGAGGACAAACCTTGCTGTAAGGC...AGAATGGGTTTGGTGAGAGGGTTCCAATATTAACAACCCAACTTCAAGCTCATT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000257181.10
3UTR-3UTR CAA 90 bp AATGAGCTTGAAGTTGGGTTGTTAATATTGGAACCCTCTCACCAAACCCATTCTTGGATGACAGCTTGGTaGGTCCATGGGTCATTTCTG +
Preference number: 3 (lower is better)
Translates to: NELEVGLLILEPSHQTHSWMTAW*VHGSFL
Trigger: CAGAAATGACCCATGGACCAACCAAGCTGTCATCCA...AGAATGGGTTTGGTGAGAGGGTTCCAATATTAACAACCCAACTTCAAGCTCATT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000257181.10
3UTR-3UTR CAA 90 bp AATGAGCTTGAAGTTGGGTTGTTAATATTGGAACCCTCTCACCAAACCCATTCTGTACTGGATGACAGCTaGGTTGGTCCATGGGTCATT +
Preference number: 3 (lower is better)
Translates to: NELEVGLLILEPSHQTHSVLDDS*VGPWVI
Trigger: AATGACCCATGGACCAACCAAGCTGTCATCCAGTAC...AGAATGGGTTTGGTGAGAGGGTTCCAATATTAACAACCCAACTTCAAGCTCATT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000257181.10
3UTR GCA 72 bp CACTTTTTCTCAAACCTTTGGAGCCTTTTGCTTCATTaGCTTCTTGTTATAAGATCTGAGACCATCCTGACC +
Preference number: 3 (lower is better)
Translates to: HFFSNLWSLLLH*LLVIRSETILT
Trigger: GGTCAGGATGGTCTCAGATCTTATAACAAGAAGGCAATGAAGCAAAAGGCTCCAAAGGTTTGAGAAAAAGTG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000257181.10
3UTR-3UTR CAA 90 bp AATGAGCTTGAAGTTGGGTTGTTAATATTGGAACCCTCTCACCAAACCCATTCTAGTATTAAAAGGCGATaGTGCCCTATGGCAAAGCTT +
Preference number: 3 (lower is better)
Translates to: NELEVGLLILEPSHQTHSSIKRR*CPMAKL
Trigger: AAGCTTTGCCATAGGGCACAATCGCCTTTTAATACT...AGAATGGGTTTGGTGAGAGGGTTCCAATATTAACAACCCAACTTCAAGCTCATT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000257181.10
3UTR-3UTR CAA 90 bp AATGAGCTTGAAGTTGGGTTGTTAATATTGGAACCCTCTCACCAAACCCATTCTTATTTCTTTTGCCCCTaGGAACACATCTCCCTTACT +
Preference number: 3 (lower is better)
Translates to: NELEVGLLILEPSHQTHSYFFCP*EHISLT
Trigger: AGTAAGGGAGATGTGTTCCAAGGGGCAAAAGAAATA...AGAATGGGTTTGGTGAGAGGGTTCCAATATTAACAACCCAACTTCAAGCTCATT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000257181.10
3UTR TCA 72 bp AGTTTAAAATGCTTCATCCATAGGCAAGCACATAGATaGCAGAAAGAGCCTTACAGCAAGGTTTGTCCTCAA +
Preference number: 3 (lower is better)
Translates to: SLKCFIHRQAHR*QKEPYSKVCPQ
Trigger: TTGAGGACAAACCTTGCTGTAAGGCTCTTTCTGTCATCTATGTGCTTGCCTATGGATGAAGCATTTTAAACT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000257181.10
3UTR CCA 72 bp AATAGGGACATTCTCTTTCCTGCTATTGATTGGCTGTaGTACCTCAATTTTGGTCCACATATTACCATATGT +
Preference number: 3 (lower is better)
Translates to: NRDILFPAIDWL*YLNFGPHITIC
Trigger: ACATATGGTAATATGTGGACCAAAATTGAGGTACCACAGCCAATCAATAGCAGGAAAGAGAATGTCCCTATT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000257181.10
3UTR CCA 72 bp TGGAGAATTTCTGTCACATTAACCTTTTTGAGGGAGTaGGCAATCTGTGATCGTTCTTTTCTAAATAATGCT +
Preference number: 3 (lower is better)
Translates to: WRISVTLTFLRE*AICDRSFLNNA
Trigger: AGCATTATTTAGAAAAGAACGATCACAGATTGCCCACTCCCTCAAAAAGGTTAATGTGACAGAAATTCTCCA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000257181.10
3UTR-3UTR CAA 90 bp AGTATTAAAAGGCGATTGTGCCCTATGGCAAAGCTTTTAAGTCAGTGTATTTCATGTGGTACCTCAATTTaGGTCCACATATTACCATAT +
Preference number: 3 (lower is better)
Translates to: SIKRRLCPMAKLLSQCISCGTSI*VHILPY
Trigger: ATATGGTAATATGTGGACCAAAATTGAGGTACCACA...TGAAATACACTGACTTAAAAGCTTTGCCATAGGGCACAATCGCCTTTTAATACT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000257181.10
3UTR TCA 72 bp TCAAAAGTTCATCAGCCAGAAAGAAGTACTATCTGGTaGACTTCATTCATTCCAACCATCTCTCTTAATCAT +
Preference number: 3 (lower is better)
Translates to: SKVHQPERSTIW*TSFIPTISLNH
Trigger: ATGATTAAGAGAGATGGTTGGAATGAATGAAGTTCACCAGATAGTACTTCTTTCTGGCTGATGAACTTTTGA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000257181.10
3UTR TCA 72 bp CACCAGAATTCACTTTGCATAGTAAGTATTCTTTCCTaGAATTTGTCTCAGTACAGAATACAGATGTGTACA +
Preference number: 3 (lower is better)
Translates to: HQNSLCIVSILS*NLSQYRIQMCT
Trigger: TGTACACATCTGTATTCTGTACTGAGACAAATTTCAGGAAAGAATACTTACTATGCAAAGTGAATTCTGGTG
35% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000257181.10
CDS-3UTR CCA 90 bp AATGAGCTTGAAGTTGGGTTGTTAATATTGGAACCCTCTCACCAAACCCATTCTATCGACTCCGCCTTCTaGGAGACCGGCTCCTACTCC +
Preference number: 4 (lower is better)
Translates to: NELEVGLLILEPSHQTHSIDSAF*ETGSYS
Trigger: GGAGTAGGAGCCGGTCTCCCAGAAGGCGGAGTCGAT...AGAATGGGTTTGGTGAGAGGGTTCCAATATTAACAACCCAACTTCAAGCTCATT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000257181.10
CDS-3UTR GCA 90 bp AATGAGCTTGAAGTTGGGTTGTTAATATTGGAACCCTCTCACCAAACCCATTCTGCTCACCGCATCCTCTaGCTCCCAGGTTCAAGCGAT +
Preference number: 4 (lower is better)
Translates to: NELEVGLLILEPSHQTHSAHRIL*LPGSSD
Trigger: ATCGCTTGAACCTGGGAGGCAGAGGATGCGGTGAGC...AGAATGGGTTTGGTGAGAGGGTTCCAATATTAACAACCCAACTTCAAGCTCATT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000257181.10
CDS-3UTR TCA 90 bp AATGAGCTTGAAGTTGGGTTGTTAATATTGGAACCCTCTCACCAAACCCATTCTCCGGCGGTGATCAGGTaGTGGCACTCTTTCCAACTT +
Preference number: 4 (lower is better)
Translates to: NELEVGLLILEPSHQTHSPAVIR*WHSFQL
Trigger: AAGTTGGAAAGAGTGCCATCACCTGATCACCGCCGG...AGAATGGGTTTGGTGAGAGGGTTCCAATATTAACAACCCAACTTCAAGCTCATT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000257181.10
CDS-3UTR TCA 90 bp AATGAGCTTGAAGTTGGGTTGTTAATATTGGAACCCTCTCACCAAACCCATTCTCTTAGGCGACCATCTTaGAGCCGGAAACACCGTAGT +
Preference number: 4 (lower is better)
Translates to: NELEVGLLILEPSHQTHSLRRPS*SRKHRS
Trigger: ACTACGGTGTTTCCGGCTTCAAGATGGTCGCCTAAG...AGAATGGGTTTGGTGAGAGGGTTCCAATATTAACAACCCAACTTCAAGCTCATT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000257181.10
CDS-3UTR CCA 90 bp AATGAGCTTGAAGTTGGGTTGTTAATATTGGAACCCTCTCACCAAACCCATTCTTACTGGATGACAGCTTaGTTGGTCCATGGGTCATTT +
Preference number: 4 (lower is better)
Translates to: NELEVGLLILEPSHQTHSYWMTA*LVHGSF
Trigger: AAATGACCCATGGACCAACCAAGCTGTCATCCAGTA...AGAATGGGTTTGGTGAGAGGGTTCCAATATTAACAACCCAACTTCAAGCTCATT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000257181.10
CDS-3UTR CCA 90 bp AATGAGCTTGAAGTTGGGTTGTTAATATTGGAACCCTCTCACCAAACCCATTCTACCTTTTTGAGGGAGTaGGCAATCTGTGATCGTTCT +
Preference number: 4 (lower is better)
Translates to: NELEVGLLILEPSHQTHSTFLRE*AICDRS
Trigger: AGAACGATCACAGATTGCCCACTCCCTCAAAAAGGT...AGAATGGGTTTGGTGAGAGGGTTCCAATATTAACAACCCAACTTCAAGCTCATT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000257181.10
CDS-3UTR TCA 90 bp AGTATTAAAAGGCGATTGTGCCCTATGGCAAAGCTTTTAAGTCAGTGTATTTCAAGGCAAGCACATAGATaGCAGAAAGAGCCTTACAGC +
Preference number: 4 (lower is better)
Translates to: SIKRRLCPMAKLLSQCISRQAHR*QKEPYS
Trigger: GCTGTAAGGCTCTTTCTGTCATCTATGTGCTTGCCT...TGAAATACACTGACTTAAAAGCTTTGCCATAGGGCACAATCGCCTTTTAATACT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000257181.10
CDS-3UTR TCA 90 bp AATGAGCTTGAAGTTGGGTTGTTAATATTGGAACCCTCTCACCAAACCCATTCTTCTTGTTATAAGATCTaGGACCATCCTGACCCCATT +
Preference number: 4 (lower is better)
Translates to: NELEVGLLILEPSHQTHSSCYKI*DHPDPI
Trigger: AATGGGGTCAGGATGGTCTCAGATCTTATAACAAGA...AGAATGGGTTTGGTGAGAGGGTTCCAATATTAACAACCCAACTTCAAGCTCATT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000257181.10
CDS-3UTR TCA 90 bp AATGAGCTTGAAGTTGGGTTGTTAATATTGGAACCCTCTCACCAAACCCATTCTTCTGGGAAGTCTTATTaGCAGATTCCACCATTACTT +
Preference number: 4 (lower is better)
Translates to: NELEVGLLILEPSHQTHSSGKSY*QIPPLL
Trigger: AAGTAATGGTGGAATCTGTCAATAAGACTTCCCAGA...AGAATGGGTTTGGTGAGAGGGTTCCAATATTAACAACCCAACTTCAAGCTCATT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000257181.10
CDS-3UTR GCA 90 bp AGTATTAAAAGGCGATTGTGCCCTATGGCAAAGCTTTTAAGTCAGTGTATTTCATGCTGGGACTACAGTTaGAGAAGTCATTCCATCACT +
Preference number: 4 (lower is better)
Translates to: SIKRRLCPMAKLLSQCISCWDYS*RSHSIT
Trigger: AGTGATGGAATGACTTCTGCAACTGTAGTCCCAGCA...TGAAATACACTGACTTAAAAGCTTTGCCATAGGGCACAATCGCCTTTTAATACT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000257181.10
CDS-3UTR CCA 90 bp AATGAGCTTGAAGTTGGGTTGTTAATATTGGAACCCTCTCACCAAACCCATTCTATTTTAAGAGTGTACTaGATGACAGCTTGGTTGGTC +
Preference number: 4 (lower is better)
Translates to: NELEVGLLILEPSHQTHSILRVY*MTAWLV
Trigger: GACCAACCAAGCTGTCATCCAGTACACTCTTAAAAT...AGAATGGGTTTGGTGAGAGGGTTCCAATATTAACAACCCAACTTCAAGCTCATT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000257181.10
CDS-3UTR CCA 90 bp AATGAGCTTGAAGTTGGGTTGTTAATATTGGAACCCTCTCACCAAACCCATTCTATTTCTTTTGCCCCTTaGAACACATCTCCCTTACTT +
Preference number: 4 (lower is better)
Translates to: NELEVGLLILEPSHQTHSISFAP*NTSPLL
Trigger: AAGTAAGGGAGATGTGTTCCAAGGGGCAAAAGAAAT...AGAATGGGTTTGGTGAGAGGGTTCCAATATTAACAACCCAACTTCAAGCTCATT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000257181.10
3UTR CAA 72 bp AATTCCTGGCACTTTTTCTCAAACCTTTGGAGCCTTTaGCTTCATTGCCTTCTTGTTATAAGATCTGAGACC +
Preference number: 4 (lower is better)
Translates to: NSWHFFSNLWSL*LHCLLVIRSET
Trigger: GGTCTCAGATCTTATAACAAGAAGGCAATGAAGCAAAAGGCTCCAAAGGTTTGAGAAAAAGTGCCAGGAATT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000257181.10
CDS-3UTR GCA 90 bp AATGAGCTTGAAGTTGGGTTGTTAATATTGGAACCCTCTCACCAAACCCATTCTATTAAAAGGCGATTGTaGCCTATGGCAAAGCTTTTA +
Preference number: 4 (lower is better)
Translates to: NELEVGLLILEPSHQTHSIKRRL*PMAKLL
Trigger: TAAAAGCTTTGCCATAGGGCACAATCGCCTTTTAAT...AGAATGGGTTTGGTGAGAGGGTTCCAATATTAACAACCCAACTTCAAGCTCATT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000257181.10
CDS-3UTR TCA 90 bp AGTATTAAAAGGCGATTGTGCCCTATGGCAAAGCTTTTAAGTCAGTGTATTTCATACTCCTTTGATCTTTaGATAACAGCAGCAGCACAA +
Preference number: 4 (lower is better)
Translates to: SIKRRLCPMAKLLSQCISYSFDL*ITAAAQ
Trigger: TTGTGCTGCTGCTGTTATTCAAAGATCAAAGGAGTA...TGAAATACACTGACTTAAAAGCTTTGCCATAGGGCACAATCGCCTTTTAATACT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000257181.10
CDS-3UTR TCA 90 bp AGTATTAAAAGGCGATTGTGCCCTATGGCAAAGCTTTTAAGTCAGTGTATTTCAGATCTGAGACCATCCTaGCCCCATTTAATTCTTTTT +
Preference number: 4 (lower is better)
Translates to: SIKRRLCPMAKLLSQCISDLRPS*PHLILF
Trigger: AAAAAGAATTAAATGGGGTCAGGATGGTCTCAGATC...TGAAATACACTGACTTAAAAGCTTTGCCATAGGGCACAATCGCCTTTTAATACT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000257181.10
CDS-3UTR TCA 90 bp AGTATTAAAAGGCGATTGTGCCCTATGGCAAAGCTTTTAAGTCAGTGTATTTCAAGAAGTACTATCTGGTaGACTTCATTCATTCCAACC +
Preference number: 4 (lower is better)
Translates to: SIKRRLCPMAKLLSQCISRSTIW*TSFIPT
Trigger: GGTTGGAATGAATGAAGTTCACCAGATAGTACTTCT...TGAAATACACTGACTTAAAAGCTTTGCCATAGGGCACAATCGCCTTTTAATACT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000257181.10
CDS-3UTR GCA 90 bp AGTATTAAAAGGCGATTGTGCCCTATGGCAAAGCTTTTAAGTCAGTGTATTTCAATGCATTATTTCTTTTaGCCCTTGGAACACATCTCC +
Preference number: 4 (lower is better)
Translates to: SIKRRLCPMAKLLSQCISMHYFF*PLEHIS
Trigger: GGAGATGTGTTCCAAGGGGCAAAAGAAATAATGCAT...TGAAATACACTGACTTAAAAGCTTTGCCATAGGGCACAATCGCCTTTTAATACT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000257181.10
CDS-3UTR GCA 90 bp AATGAGCTTGAAGTTGGGTTGTTAATATTGGAACCCTCTCACCAAACCCATTCTAGCCTTTTGCTTCATTaGCTTCTTGTTATAAGATCT +
Preference number: 4 (lower is better)
Translates to: NELEVGLLILEPSHQTHSSLLLH*LLVIRS
Trigger: AGATCTTATAACAAGAAGGCAATGAAGCAAAAGGCT...AGAATGGGTTTGGTGAGAGGGTTCCAATATTAACAACCCAACTTCAAGCTCATT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000257181.10
3UTR CAA 72 bp ACACATCTCCCTTACTTTCTTAGTATTAAAAGGCGATaGTGCCCTATGGCAAAGCTTTTAAGTCAGTGTATT +
Preference number: 4 (lower is better)
Translates to: THLPYFLSIKRR*CPMAKLLSQCI
Trigger: AATACACTGACTTAAAAGCTTTGCCATAGGGCACAATCGCCTTTTAATACTAAGAAAGTAAGGGAGATGTGT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000257181.10
CDS-3UTR CCA 90 bp AGTATTAAAAGGCGATTGTGCCCTATGGCAAAGCTTTTAAGTCAGTGTATTTCATTTTTCTCAAACCTTTaGAGCCTTTTGCTTCATTGC +
Preference number: 4 (lower is better)
Translates to: SIKRRLCPMAKLLSQCISFFSNL*SLLLHC
Trigger: GCAATGAAGCAAAAGGCTCCAAAGGTTTGAGAAAAA...TGAAATACACTGACTTAAAAGCTTTGCCATAGGGCACAATCGCCTTTTAATACT
37% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENST00000257181.10
CDS-3UTR CAA 90 bp AATGAGCTTGAAGTTGGGTTGTTAATATTGGAACCCTCTCACCAAACCCATTCTGAGGGGCTTCTCCTTTaGGGAGATCGACTCCGCCTT +
Preference number: 5 (lower is better)
Translates to: NELEVGLLILEPSHQTHSEGLLL*GDRLRL
Trigger: AAGGCGGAGTCGATCTCCCAAAAGGAGAAGCCCCTC...AGAATGGGTTTGGTGAGAGGGTTCCAATATTAACAACCCAACTTCAAGCTCATT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000257181.10
CDS-3UTR CAA 90 bp AGTATTAAAAGGCGATTGTGCCCTATGGCAAAGCTTTTAAGTCAGTGTATTTCAGCCTTACAGCAAGGTTaGTCCTCAAGCTCCATCTCC +
Preference number: 5 (lower is better)
Translates to: SIKRRLCPMAKLLSQCISALQQG*SSSSIS
Trigger: GGAGATGGAGCTTGAGGACAAACCTTGCTGTAAGGC...TGAAATACACTGACTTAAAAGCTTTGCCATAGGGCACAATCGCCTTTTAATACT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000257181.10
CDS-3UTR CAA 90 bp AGTATTAAAAGGCGATTGTGCCCTATGGCAAAGCTTTTAAGTCAGTGTATTTCAGTACTGGATGACAGCTaGGTTGGTCCATGGGTCATT +
Preference number: 5 (lower is better)
Translates to: SIKRRLCPMAKLLSQCISVLDDS*VGPWVI
Trigger: AATGACCCATGGACCAACCAAGCTGTCATCCAGTAC...TGAAATACACTGACTTAAAAGCTTTGCCATAGGGCACAATCGCCTTTTAATACT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000257181.10
CDS-3UTR CAA 90 bp AATGAGCTTGAAGTTGGGTTGTTAATATTGGAACCCTCTCACCAAACCCATTCTAATGCATTATTTCTTTaGCCCCTTGGAACACATCTC +
Preference number: 5 (lower is better)
Translates to: NELEVGLLILEPSHQTHSNALFL*PLGTHL
Trigger: GAGATGTGTTCCAAGGGGCAAAAGAAATAATGCATT...AGAATGGGTTTGGTGAGAGGGTTCCAATATTAACAACCCAACTTCAAGCTCATT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000257181.10
CDS-3UTR CAA 90 bp AGTATTAAAAGGCGATTGTGCCCTATGGCAAAGCTTTTAAGTCAGTGTATTTCAGTCACATTAACCTTTTaGAGGGAGTGGGCAATCTGT +
Preference number: 5 (lower is better)
Translates to: SIKRRLCPMAKLLSQCISVTLTF*REWAIC
Trigger: ACAGATTGCCCACTCCCTCAAAAAGGTTAATGTGAC...TGAAATACACTGACTTAAAAGCTTTGCCATAGGGCACAATCGCCTTTTAATACT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000257181.10
CDS-3UTR CAA 90 bp AATGAGCTTGAAGTTGGGTTGTTAATATTGGAACCCTCTCACCAAACCCATTCTGAGCCTTTTGCTTCATaGCCTTCTTGTTATAAGATC +
Preference number: 5 (lower is better)
Translates to: NELEVGLLILEPSHQTHSEPFAS*PSCYKI
Trigger: GATCTTATAACAAGAAGGCAATGAAGCAAAAGGCTC...AGAATGGGTTTGGTGAGAGGGTTCCAATATTAACAACCCAACTTCAAGCTCATT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000257181.10
CDS-3UTR CAA 90 bp AGTATTAAAAGGCGATTGTGCCCTATGGCAAAGCTTTTAAGTCAGTGTATTTCAAGTATTAAAAGGCGATaGTGCCCTATGGCAAAGCTT +
Preference number: 5 (lower is better)
Translates to: SIKRRLCPMAKLLSQCISSIKRR*CPMAKL
Trigger: AAGCTTTGCCATAGGGCACAATCGCCTTTTAATACT...TGAAATACACTGACTTAAAAGCTTTGCCATAGGGCACAATCGCCTTTTAATACT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000257181.10
CDS-3UTR CAA 90 bp AGTATTAAAAGGCGATTGTGCCCTATGGCAAAGCTTTTAAGTCAGTGTATTTCAGAGCTTGAAGTTGGGTaGTTAATATTGGAACCCTCT +
Preference number: 5 (lower is better)
Translates to: SIKRRLCPMAKLLSQCISELEVG*LILEPS
Trigger: AGAGGGTTCCAATATTAACAACCCAACTTCAAGCTC...TGAAATACACTGACTTAAAAGCTTTGCCATAGGGCACAATCGCCTTTTAATACT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000257181.10
CDS-3UTR CAA 90 bp AGTATTAAAAGGCGATTGTGCCCTATGGCAAAGCTTTTAAGTCAGTGTATTTCAAACCTTTGGAGCCTTTaGCTTCATTGCCTTCTTGTT +
Preference number: 5 (lower is better)
Translates to: SIKRRLCPMAKLLSQCISNLWSL*LHCLLV
Trigger: AACAAGAAGGCAATGAAGCAAAAGGCTCCAAAGGTT...TGAAATACACTGACTTAAAAGCTTTGCCATAGGGCACAATCGCCTTTTAATACT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000257181.10
CDS-3UTR CAA 90 bp AGTATTAAAAGGCGATTGTGCCCTATGGCAAAGCTTTTAAGTCAGTGTATTTCAACCAGCACACTCTACTaGTTATTTCTATATAGACAG +
Preference number: 5 (lower is better)
Translates to: SIKRRLCPMAKLLSQCISTSTLY*LFLYRQ
Trigger: CTGTCTATATAGAAATAACAAGTAGAGTGTGCTGGT...TGAAATACACTGACTTAAAAGCTTTGCCATAGGGCACAATCGCCTTTTAATACT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000257181.10