Pregenerated sensors for PRPF3 (Homo sapiens)

Ensembl gene IDs: ENSG00000117360

Ensembl transcript IDs: ENST00000467329.5, ENST00000476970.1, ENST00000493553.1, ENST00000496202.5

Found 7 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS GCA 90 bp	TTCCTCTCTATAAACAAAGGCCTCTGGAGTAAACAAATAGATGAATaGTTAAAAGGTAGAGTTGATGAGTCTAGAAATATTTCCACACTC	+
Preference number: 5 (lower is better) Translates to: FLSINKGLWSKQIDE*LKGRVDESRNISTL Trigger: GAGTGTGGAAATATTTCTAGACTCATCAACTCTACCTTTTAAGCATTCATCTATTTGTTTACTCCAGAGGCCTTTGTTTATAGAGAGGAA 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000476970.1
CDS TCA 72 bp	CGGAGCCCGAACGTTACACCGGAACCGGAAACCTTCTaGCCGCCCTACGGCGTGCCGTCGCTACCGCCACCG	+
Preference number: 6 (lower is better) Translates to: RSPNVTPEPETF*PPYGVPSLPPP Trigger: CGGTGGCGGTAGCGACGGCACGCCGTAGGGCGGTCAGAAGGTTTCCGGTTCCGGTGTAACGTTCGGGCTCCG 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000496202.5
CDS CAA 90 bp	CCTACCAGCATTTTCTGGCTATTCCCAGGGGAATATGACACAACCTaGCAAATAGCCACCTGCCAGAAGCAGGGTCTACTAGACTCTCCA	+
Preference number: 6 (lower is better) Translates to: PTSIFWLFPGEYDTT*QIATCQKQGLLDSP Trigger: TGGAGAGTCTAGTAGACCCTGCTTCTGGCAGGTGGCTATTTGCAAGGTTGTGTCATATTCCCCTGGGAATAGCCAGAAAATGCTGGTAGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000467329.5
CDS CCA 72 bp	GGAAAGGTACTTGCCCGAGGTTTCCACCCAATCCCATaGCACTTACTTCTGTCTTTTTGCCATCTGAGCTCT	+
Preference number: 6 (lower is better) Translates to: GKVLARGFHPIP*HLLLSFCHLSS Trigger: AGAGCTCAGATGGCAAAAAGACAGAAGTAAGTGCCATGGGATTGGGTGGAAACCTCGGGCAAGTACCTTTCC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000493553.1
CDS CAA 72 bp	ATTTTCTGGCTATTCCCAGGGGAATATGACACAACCTaGCAAATAGCCACCTGCCAGAAGCAGGGTCTACTA	+
Preference number: 6 (lower is better) Translates to: IFWLFPGEYDTT*QIATCQKQGLL Trigger: TAGTAGACCCTGCTTCTGGCAGGTGGCTATTTGCAAGGTTGTGTCATATTCCCCTGGGAATAGCCAGAAAAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000467329.5
CDS CAA 90 bp	CAAGAAGTTTTCCTCATTATAACCTATCCCACTCTGATTAAACTTTaGTTTCACATTCTCTTAGCGTGTAAGAGCTTGGTTCATATTAGG	+
Preference number: 6 (lower is better) Translates to: QEVFLIITYPTLIKL*FHILLACKSLVHIR Trigger: CCTAATATGAACCAAGCTCTTACACGCTAAGAGAATGTGAAACAAAAGTTTAATCAGAGTGGGATAGGTTATAATGAGGAAAACTTCTTG 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000467329.5
CDS CAA 72 bp	TTCCTCATTATAACCTATCCCACTCTGATTAAACTTTaGTTTCACATTCTCTTAGCGTGTAAGAGCTTGGTT	+
Preference number: 6 (lower is better) Translates to: FLIITYPTLIKL*FHILLACKSLV Trigger: AACCAAGCTCTTACACGCTAAGAGAATGTGAAACAAAAGTTTAATCAGAGTGGGATAGGTTATAATGAGGAA 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000467329.5

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