Pregenerated sensors for PRPF18 (Homo sapiens)
Ensembl gene IDs: ENSG00000165630Ensembl transcript IDs: ENST00000320054.4, ENST00000378572.8, ENST00000417658.5
Found 46 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR CCA 90 bp | AAAAATCAGCTTGCAGTCAGATATGAAATGAAGGCCAACAAAGTTCTTAAAACCCGAACCCAGCCTCACTaGGCCGGCGGCCGCGAACCC | + |
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Preference number: 4 (lower is better) Translates to: KNQLAVRYEMKANKVLKTRTQPH*AGGREP Trigger: GGGTTCGCGGCCGCCGGCCCAGTGAGGCTGGGTTCG...GGTTTTAAGAACTTTGTTGGCCTTCATTTCATATCTGACTGCAAGCTGATTTTT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000378572.8 |
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| CDS-3UTR TCA 90 bp | CTCATTCCTGTTGGTAATTCCAGAAGTCCACAGCCTGCTTCCCTAAGTTTCTTATCCTCTCCAGGCTCCTaGCCGCCGACGATTTCATTG | + |
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Preference number: 4 (lower is better) Translates to: LIPVGNSRSPQPASLSFLSSPGS*PPTISL Trigger: CAATGAAATCGTCGGCGGTCAGGAGCCTGGAGAGGA...TAAGAAACTTAGGGAAGCAGGCTGTGGACTTCTGGAATTACCAACAGGAATGAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000378572.8 |
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| CDS-3UTR GCA 90 bp | CCTGTTGGTAATTCCAGAAGTCCACAGCCTGCTTCCCTAAGTTTCTTATTGTTACTGTCCTCCACCAGCTaGCGCTTCCGAAGGATCTCT | + |
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Preference number: 4 (lower is better) Translates to: PVGNSRSPQPASLSFLLLLSSTS*RFRRIS Trigger: AGAGATCCTTCGGAAGCGGCAGCTGGTGGAGGACAG...TAACAATAAGAAACTTAGGGAAGCAGGCTGTGGACTTCTGGAATTACCAACAGG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000378572.8 |
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| CDS-3UTR TCA 90 bp | CTCATTCCTGTTGGTAATTCCAGAAGTCCACAGCCTGCTTCCCTAAGTTTCTTACGCCGACGATTTCATTaGGGTACTGCTGATCAATCT | + |
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Preference number: 4 (lower is better) Translates to: LIPVGNSRSPQPASLSFLRRRFH*GTADQS Trigger: AGATTGATCAGCAGTACCTCAATGAAATCGTCGGCG...TAAGAAACTTAGGGAAGCAGGCTGTGGACTTCTGGAATTACCAACAGGAATGAG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000378572.8 |
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| CDS-3UTR TCA 90 bp | AAAAATCAGCTTGCAGTCAGATATGAAATGAAGGCCAACAAAGTTCTTAAAACCCGGCCGCGAACCCACTaGGTATACGGAACAACAAGC | + |
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Preference number: 4 (lower is better) Translates to: KNQLAVRYEMKANKVLKTRPRTH*VYGTTS Trigger: GCTTGTTGTTCCGTATACTCAGTGGGTTCGCGGCCG...GGTTTTAAGAACTTTGTTGGCCTTCATTTCATATCTGACTGCAAGCTGATTTTT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000378572.8 |
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| CDS-3UTR TCA 90 bp | CTCATTCCTGTTGGTAATTCCAGAAGTCCACAGCCTGCTTCCCTAAGTTTCTTACTTCCGAAGGATCTCTaGTTTCAGAATGTCCATCTC | + |
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Preference number: 4 (lower is better) Translates to: LIPVGNSRSPQPASLSFLLPKDL*FQNVHL Trigger: GAGATGGACATTCTGAAATCAGAGATCCTTCGGAAG...TAAGAAACTTAGGGAAGCAGGCTGTGGACTTCTGGAATTACCAACAGGAATGAG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000378572.8 |
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| CDS-3UTR CCA 90 bp | CCTGTTGGTAATTCCAGAAGTCCACAGCCTGCTTCCCTAAGTTTCTTATTGTTACTGGTCCTCCTCTTTTaGCTGTATCTTGTAGCCACA | + |
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Preference number: 4 (lower is better) Translates to: PVGNSRSPQPASLSFLLLLVLLF*LYLVAT Trigger: TGTGGCTACAAGATACAGCCAAAAGAGGAGGACCAG...TAACAATAAGAAACTTAGGGAAGCAGGCTGTGGACTTCTGGAATTACCAACAGG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000378572.8 |
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| CDS-3UTR CCA 90 bp | CCTGTTGGTAATTCCAGAAGTCCACAGCCTGCTTCCCTAAGTTTCTTATTGTTAGACTCGGTCTGTTTCTaGGTCGCACTGTTCAGTTTA | + |
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Preference number: 4 (lower is better) Translates to: PVGNSRSPQPASLSFLLLDSVCF*VALFSL Trigger: TAAACTGAACAGTGCGACCCAGAAACAGACCGAGTC...TAACAATAAGAAACTTAGGGAAGCAGGCTGTGGACTTCTGGAATTACCAACAGG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000378572.8 |
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| CDS-3UTR CCA 90 bp | CCTGTTGGTAATTCCAGAAGTCCACAGCCTGCTTCCCTAAGTTTCTTATTGTTACTGCCAGTTCTGGCATaGATACCAACCATAGTGACA | + |
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Preference number: 4 (lower is better) Translates to: PVGNSRSPQPASLSFLLLLPVLA*IPTIVT Trigger: TGTCACTATGGTTGGTATCCATGCCAGAACTGGCAG...TAACAATAAGAAACTTAGGGAAGCAGGCTGTGGACTTCTGGAATTACCAACAGG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000378572.8 |
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| CDS-3UTR TCA 90 bp | CTCATTCCTGTTGGTAATTCCAGAAGTCCACAGCCTGCTTCCCTAAGTTTCTTATCATTGAGGTACTGCTaGTCAATCTTATCCAAGGCT | + |
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Preference number: 4 (lower is better) Translates to: LIPVGNSRSPQPASLSFLSLRYC*SILSKA Trigger: AGCCTTGGATAAGATTGATCAGCAGTACCTCAATGA...TAAGAAACTTAGGGAAGCAGGCTGTGGACTTCTGGAATTACCAACAGGAATGAG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000378572.8 |
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| CDS-3UTR TCA 90 bp | CTCATTCCTGTTGGTAATTCCAGAAGTCCACAGCCTGCTTCCCTAAGTTTCTTAATGTCCATGTCTTTATaGTCATCGCCTTTCCCTAAG | + |
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Preference number: 4 (lower is better) Translates to: LIPVGNSRSPQPASLSFLMSMSL*SSPFPK Trigger: CTTAGGGAAAGGCGATGATCATAAAGACATGGACAT...TAAGAAACTTAGGGAAGCAGGCTGTGGACTTCTGGAATTACCAACAGGAATGAG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000378572.8 |
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| CDS-3UTR GCA 90 bp | CCTGTTGGTAATTCCAGAAGTCCACAGCCTGCTTCCCTAAGTTTCTTATTGTTACTTCTGATGACCTCTTaGCTAGAAAGCGTCATAGGT | + |
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Preference number: 4 (lower is better) Translates to: PVGNSRSPQPASLSFLLLLLMTS*LESVIG Trigger: ACCTATGACGCTTTCTAGGCAAGAGGTCATCAGAAG...TAACAATAAGAAACTTAGGGAAGCAGGCTGTGGACTTCTGGAATTACCAACAGG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000378572.8 |
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| CDS-3UTR GCA 90 bp | CTCATTCCTGTTGGTAATTCCAGAAGTCCACAGCCTGCTTCCCTAAGTTTCTTAGTTTACCCTGCACACTaGGTTTCACATAATCTTCTC | + |
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Preference number: 4 (lower is better) Translates to: LIPVGNSRSPQPASLSFLVYPAH*VSHNLL Trigger: GAGAAGATTATGTGAAACGCAGTGTGCAGGGTAAAC...TAAGAAACTTAGGGAAGCAGGCTGTGGACTTCTGGAATTACCAACAGGAATGAG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000378572.8 |
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| CDS-3UTR CCA 90 bp | CTCATTCCTGTTGGTAATTCCAGAAGTCCACAGCCTGCTTCCCTAAGTTTCTTAGAAGTTAATGGTTTCTaGTCCTCCTCTTTTGGCTGT | + |
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Preference number: 4 (lower is better) Translates to: LIPVGNSRSPQPASLSFLEVNGF*SSSFGC Trigger: ACAGCCAAAAGAGGAGGACCAGAAACCATTAACTTC...TAAGAAACTTAGGGAAGCAGGCTGTGGACTTCTGGAATTACCAACAGGAATGAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000378572.8 |
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| CDS-3UTR CCA 90 bp | CTCATTCCTGTTGGTAATTCCAGAAGTCCACAGCCTGCTTCCCTAAGTTTCTTAAAGGCGCATTTCCAATaGCCATCTGAAGATAAGCAT | + |
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Preference number: 4 (lower is better) Translates to: LIPVGNSRSPQPASLSFLKAHFQ*PSEDKH Trigger: ATGCTTATCTTCAGATGGCCATTGGAAATGCGCCTT...TAAGAAACTTAGGGAAGCAGGCTGTGGACTTCTGGAATTACCAACAGGAATGAG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000378572.8 |
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| CDS-3UTR CCA 90 bp | CTCATTCCTGTTGGTAATTCCAGAAGTCCACAGCCTGCTTCCCTAAGTTTCTTACTCCACACATTTGGATaGGTCTGTAGGAAAGTGTTT | + |
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Preference number: 4 (lower is better) Translates to: LIPVGNSRSPQPASLSFLLHTFG*VCRKVF Trigger: AAACACTTTCCTACAGACCCATCCAAATGTGTGGAG...TAAGAAACTTAGGGAAGCAGGCTGTGGACTTCTGGAATTACCAACAGGAATGAG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000378572.8 |
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| CDS-3UTR TCA 90 bp | CCTGTTGGTAATTCCAGAAGTCCACAGCCTGCTTCCCTAAGTTTCTTATTGTTAGCTTGCAGTCAGATATaGAATGAAGGCCAACAAAGT | + |
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Preference number: 4 (lower is better) Translates to: PVGNSRSPQPASLSFLLLACSQI*NEGQQS Trigger: ACTTTGTTGGCCTTCATTTCATATCTGACTGCAAGC...TAACAATAAGAAACTTAGGGAAGCAGGCTGTGGACTTCTGGAATTACCAACAGG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000378572.8 |
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| CDS-3UTR TCA 90 bp | CTCATTCCTGTTGGTAATTCCAGAAGTCCACAGCCTGCTTCCCTAAGTTTCTTACAGTCAGATATGAAATaGAGGCCAACAAAGTTCTTA | + |
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Preference number: 4 (lower is better) Translates to: LIPVGNSRSPQPASLSFLQSDMK*RPTKFL Trigger: TAAGAACTTTGTTGGCCTTCATTTCATATCTGACTG...TAAGAAACTTAGGGAAGCAGGCTGTGGACTTCTGGAATTACCAACAGGAATGAG 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000378572.8 |
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| CDS-3UTR GCA 90 bp | CCTGTTGGTAATTCCAGAAGTCCACAGCCTGCTTCCCTAAGTTTCTTATTGTTAACACAGATCTCACAGTaGATTGTACTCCACACATTT | + |
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Preference number: 4 (lower is better) Translates to: PVGNSRSPQPASLSFLLLTQISQ*IVLHTF Trigger: AAATGTGTGGAGTACAATGCACTGTGAGATCTGTGT...TAACAATAAGAAACTTAGGGAAGCAGGCTGTGGACTTCTGGAATTACCAACAGG 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000378572.8 |
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| CDS-3UTR CCA 90 bp | CTCATTCCTGTTGGTAATTCCAGAAGTCCACAGCCTGCTTCCCTAAGTTTCTTAAGTGTTTCTGGCAAATaGTCATTAACCTCTTCAATC | + |
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Preference number: 4 (lower is better) Translates to: LIPVGNSRSPQPASLSFLSVSGK*SLTSSI Trigger: GATTGAAGAGGTTAATGACCATTTGCCAGAAACACT...TAAGAAACTTAGGGAAGCAGGCTGTGGACTTCTGGAATTACCAACAGGAATGAG 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000378572.8 |
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| CDS-3UTR CCA 90 bp | CCTGTTGGTAATTCCAGAAGTCCACAGCCTGCTTCCCTAAGTTTCTTATTGTTAGTAGAACTCAGAGACTaGAAACTCCAGTTTTCTTCT | + |
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Preference number: 4 (lower is better) Translates to: PVGNSRSPQPASLSFLLLVELRD*KLQFSS Trigger: AGAAGAAAACTGGAGTTTCCAGTCTCTGAGTTCTAC...TAACAATAAGAAACTTAGGGAAGCAGGCTGTGGACTTCTGGAATTACCAACAGG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000378572.8 |
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| CDS-3UTR CCA 90 bp | CCTGTTGGTAATTCCAGAAGTCCACAGCCTGCTTCCCTAAGTTTCTTATTGTTACTAACTCTTCAATTGTaGTGTTTTCCTCATGAACTT | + |
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Preference number: 4 (lower is better) Translates to: PVGNSRSPQPASLSFLLLLTLQL*CFPHEL Trigger: AAGTTCATGAGGAAAACACCACAATTGAAGAGTTAG...TAACAATAAGAAACTTAGGGAAGCAGGCTGTGGACTTCTGGAATTACCAACAGG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000378572.8 |
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| CDS-3UTR TCA 90 bp | AAAAATCAGCTTGCAGTCAGATATGAAATGAAGGCCAACAAAGTTCTTAAAACCTCTCTCCAAATAGTCTaGTTGGTTCTCCTCTTTCTC | + |
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Preference number: 4 (lower is better) Translates to: KNQLAVRYEMKANKVLKTSLQIV*LVLLFL Trigger: GAGAAAGAGGAGAACCAATCAGACTATTTGGAGAGA...GGTTTTAAGAACTTTGTTGGCCTTCATTTCATATCTGACTGCAAGCTGATTTTT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000378572.8 |
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| CDS-3UTR GCA 90 bp | AAAAATCAGCTTGCAGTCAGATATGAAATGAAGGCCAACAAAGTTCTTAAAACCCAGAAGTCCACAGCCTaGTTCCCTAAGTTTCTTATT | + |
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Preference number: 4 (lower is better) Translates to: KNQLAVRYEMKANKVLKTQKSTA*FPKFLI Trigger: AATAAGAAACTTAGGGAAGCAGGCTGTGGACTTCTG...GGTTTTAAGAACTTTGTTGGCCTTCATTTCATATCTGACTGCAAGCTGATTTTT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000378572.8 |
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| CDS-3UTR CCA 90 bp | AAAAATCAGCTTGCAGTCAGATATGAAATGAAGGCCAACAAAGTTCTTAAAACCGTAGGAAAGTGTTTCTaGCAAATGGTCATTAACCTC | + |
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Preference number: 4 (lower is better) Translates to: KNQLAVRYEMKANKVLKTVGKCF*QMVINL Trigger: GAGGTTAATGACCATTTGCCAGAAACACTTTCCTAC...GGTTTTAAGAACTTTGTTGGCCTTCATTTCATATCTGACTGCAAGCTGATTTTT 37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000378572.8 |
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| CDS-3UTR GCA 90 bp | AAAAATCAGCTTGCAGTCAGATATGAAATGAAGGCCAACAAAGTTCTTAAAACCAAGATAAGCATCATTTaGCTTCACGTATTCTCTCTG | + |
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Preference number: 4 (lower is better) Translates to: KNQLAVRYEMKANKVLKTKISII*LHVFSL Trigger: CAGAGAGAATACGTGAAGGCAAATGATGCTTATCTT...GGTTTTAAGAACTTTGTTGGCCTTCATTTCATATCTGACTGCAAGCTGATTTTT 36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000378572.8 |
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| CDS-3UTR CCA 90 bp | AAAAATCAGCTTGCAGTCAGATATGAAATGAAGGCCAACAAAGTTCTTAAAACCTCCCTTGTTAACTTCTaGTGTGAGGATCTCTATTTT | + |
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Preference number: 4 (lower is better) Translates to: KNQLAVRYEMKANKVLKTSLVNF*CEDLYF Trigger: AAAATAGAGATCCTCACACCAGAAGTTAACAAGGGA...GGTTTTAAGAACTTTGTTGGCCTTCATTTCATATCTGACTGCAAGCTGATTTTT 36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000378572.8 |
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| CDS CCA 90 bp | TTTAAGCTCCAGTTTCCCGCTCCAGCTCCTCGAACCCAGCCTCACTaGGCCGGCGGCCGCGAACCCACTGAGTATACGGAACAACAAGCC | + |
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Preference number: 5 (lower is better) Translates to: FKLQFPAPAPRTQPH*AGGREPTEYTEQQA Trigger: GGCTTGTTGTTCCGTATACTCAGTGGGTTCGCGGCCGCCGGCCCAGTGAGGCTGGGTTCGAGGAGCTGGAGCGGGAAACTGGAGCTTAAA 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000320054.4 ENST00000378572.8 ENST00000417658.5 |
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| CDS GCA 90 bp | TCCTCAATCGAGTTCCTCACCAGCAGGTTCCTGTCCTCCACCAGCTaGCGCTTCCGAAGGATCTCTGATTTCAGAATGTCCATCTCGCCG | + |
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Preference number: 5 (lower is better) Translates to: SSIEFLTSRFLSSTS*RFRRISDFRMSISP Trigger: CGGCGAGATGGACATTCTGAAATCAGAGATCCTTCGGAAGCGGCAGCTGGTGGAGGACAGGAACCTGCTGGTGAGGAACTCGATTGAGGA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000320054.4 ENST00000417658.5 |
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| CDS-3UTR CAA 90 bp | CTCATTCCTGTTGGTAATTCCAGAAGTCCACAGCCTGCTTCCCTAAGTTTCTTAGCTTCCTCTTCTTTTTaGGCGAGCTCACTACGCTTG | + |
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Preference number: 5 (lower is better) Translates to: LIPVGNSRSPQPASLSFLASSSF*ASSLRL Trigger: CAAGCGTAGTGAGCTCGCCAAAAAAGAAGAGGAAGC...TAAGAAACTTAGGGAAGCAGGCTGTGGACTTCTGGAATTACCAACAGGAATGAG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000378572.8 |
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| CDS-3UTR CAA 90 bp | CTCATTCCTGTTGGTAATTCCAGAAGTCCACAGCCTGCTTCCCTAAGTTTCTTATCTGGTCCTCCTCTTTaGGCTGTATCTTGTAGCCAC | + |
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Preference number: 5 (lower is better) Translates to: LIPVGNSRSPQPASLSFLSGPPL*AVSCSH Trigger: GTGGCTACAAGATACAGCCAAAAGAGGAGGACCAGA...TAAGAAACTTAGGGAAGCAGGCTGTGGACTTCTGGAATTACCAACAGGAATGAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000378572.8 |
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| CDS-3UTR CAA 90 bp | CTCATTCCTGTTGGTAATTCCAGAAGTCCACAGCCTGCTTCCCTAAGTTTCTTATCTTCTGATGACCTCTaGCCTAGAAAGCGTCATAGG | + |
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Preference number: 5 (lower is better) Translates to: LIPVGNSRSPQPASLSFLSSDDL*PRKRHR Trigger: CCTATGACGCTTTCTAGGCAAGAGGTCATCAGAAGA...TAAGAAACTTAGGGAAGCAGGCTGTGGACTTCTGGAATTACCAACAGGAATGAG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000378572.8 |
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| CDS TCA 90 bp | CCAAGAAGAAACTTCAGGAATTTGGTGATGATGTCCATGTCTTTATaGTCATCGCCTTTCCCTAAGGACTCTCCAAGCGCCTCTAACTCT | + |
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Preference number: 5 (lower is better) Translates to: PRRNFRNLVMMSMSL*SSPFPKDSPSASNS Trigger: AGAGTTAGAGGCGCTTGGAGAGTCCTTAGGGAAAGGCGATGATCATAAAGACATGGACATCATCACCAAATTCCTGAAGTTTCTTCTTGG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000378572.8 ENST00000417658.5 |
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| CDS-3UTR CAA 90 bp | CTCATTCCTGTTGGTAATTCCAGAAGTCCACAGCCTGCTTCCCTAAGTTTCTTATCATTCCTCAATCCCTaGTTAACTTCTGGTGTGAGG | + |
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Preference number: 5 (lower is better) Translates to: LIPVGNSRSPQPASLSFLSFLNP*LTSGVR Trigger: CCTCACACCAGAAGTTAACAAGGGATTGAGGAATGA...TAAGAAACTTAGGGAAGCAGGCTGTGGACTTCTGGAATTACCAACAGGAATGAG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000378572.8 |
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| CDS-3UTR CAA 90 bp | CTCATTCCTGTTGGTAATTCCAGAAGTCCACAGCCTGCTTCCCTAAGTTTCTTACTTTCCTCATTCCTGTaGGTAATTCCAGAAGTCCAC | + |
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Preference number: 5 (lower is better) Translates to: LIPVGNSRSPQPASLSFLLSSFL*VIPEVH Trigger: GTGGACTTCTGGAATTACCAACAGGAATGAGGAAAG...TAAGAAACTTAGGGAAGCAGGCTGTGGACTTCTGGAATTACCAACAGGAATGAG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000378572.8 |
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| CDS-3UTR CAA 90 bp | CCTGTTGGTAATTCCAGAAGTCCACAGCCTGCTTCCCTAAGTTTCTTATTGTTATTGTACTCCACACATTaGGATGGGTCTGTAGGAAAG | + |
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Preference number: 5 (lower is better) Translates to: PVGNSRSPQPASLSFLLLLYSTH*DGSVGK Trigger: CTTTCCTACAGACCCATCCAAATGTGTGGAGTACAA...TAACAATAAGAAACTTAGGGAAGCAGGCTGTGGACTTCTGGAATTACCAACAGG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000378572.8 |
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| CDS-3UTR CAA 90 bp | CCTGTTGGTAATTCCAGAAGTCCACAGCCTGCTTCCCTAAGTTTCTTATTGTTAAGATCTCACAGTGCATaGTACTCCACACATTTGGAT | + |
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Preference number: 5 (lower is better) Translates to: PVGNSRSPQPASLSFLLLRSHSA*YSTHLD Trigger: ATCCAAATGTGTGGAGTACAATGCACTGTGAGATCT...TAACAATAAGAAACTTAGGGAAGCAGGCTGTGGACTTCTGGAATTACCAACAGG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000378572.8 |
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| CDS-3UTR CAA 90 bp | AAAAATCAGCTTGCAGTCAGATATGAAATGAAGGCCAACAAAGTTCTTAAAACCAGAAACTTCAGGAATTaGGTGATGATGTCCATGTCT | + |
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Preference number: 5 (lower is better) Translates to: KNQLAVRYEMKANKVLKTRNFRN*VMMSMS Trigger: AGACATGGACATCATCACCAAATTCCTGAAGTTTCT...GGTTTTAAGAACTTTGTTGGCCTTCATTTCATATCTGACTGCAAGCTGATTTTT 37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000378572.8 |
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| CDS GCA 72 bp | TTATTTTCCACCAGCAGGTTCCTGTCCTCCACCAGCTaGCGCTTCCGAAGGATCTCTGATTTCAGAATGTCC | + |
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Preference number: 6 (lower is better) Translates to: LFSTSRFLSSTS*RFRRISDFRMS Trigger: GGACATTCTGAAATCAGAGATCCTTCGGAAGCGGCAGCTGGTGGAGGACAGGAACCTGCTGGTGGAAAATAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000378572.8 |
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| CDS TCA 72 bp | AACTTCAGGAATTTGGTGATGATGTCCATGTCTTTATaGTCATCGCCTTTCCCTAAGGACTCTCCAAGCGCC | + |
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Preference number: 6 (lower is better) Translates to: NFRNLVMMSMSL*SSPFPKDSPSA Trigger: GGCGCTTGGAGAGTCCTTAGGGAAAGGCGATGATCATAAAGACATGGACATCATCACCAAATTCCTGAAGTT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000378572.8 ENST00000417658.5 |
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| CDS GCA 72 bp | GTTTCTGGGTCGCACTGTTCAGTTTACCCTGCACACTaGGTTTCACATAATCTTCTCTGGCATTCAATTCTT | + |
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Preference number: 6 (lower is better) Translates to: VSGSHCSVYPAH*VSHNLLWHSIL Trigger: AAGAATTGAATGCCAGAGAAGATTATGTGAAACGCAGTGTGCAGGGTAAACTGAACAGTGCGACCCAGAAAC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000378572.8 ENST00000417658.5 |
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| CDS CCA 72 bp | AGTTCTAACACTGGATTCGATGAAGTTAATGGTTTCTaGTCCTCCTCTTTTGGCTGTATCTCTCCAGATGGC | + |
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Preference number: 6 (lower is better) Translates to: SSNTGFDEVNGF*SSSFGCISPDG Trigger: GCCATCTGGAGAGATACAGCCAAAAGAGGAGGACCAGAAACCATTAACTTCATCGAATCCAGTGTTAGAACT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000417658.5 |
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| CDS TCA 72 bp | AGCGCCTCTAACTCTTCAATTGTGGTGTTTTCCTCATaGACTTTCAGATCATTCTGTGTGTCTTCCTCTCCA | + |
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Preference number: 6 (lower is better) Translates to: SASNSSIVVFSS*TFRSFCVSSSP Trigger: TGGAGAGGAAGACACACAGAATGATCTGAAAGTTCATGAGGAAAACACCACAATTGAAGAGTTAGAGGCGCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000320054.4 ENST00000378572.8 ENST00000417658.5 |
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| CDS CAA 72 bp | ATACACAGATCTCACAGTGCATTGTACTCCACACATTaGGATGGGTCTGTAGGAAAGTGTTTCTGGCAAATG | + |
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Preference number: 6 (lower is better) Translates to: IHRSHSALYSTH*DGSVGKCFWQM Trigger: CATTTGCCAGAAACACTTTCCTACAGACCCATCCAAATGTGTGGAGTACAATGCACTGTGAGATCTGTGTAT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000378572.8 |
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| CDS CAA 72 bp | TCCAGAAGTCCACAGCCTGCTTCCCTAAGTTTCTTATaGTTATTAACACACCATACACAGATCTCACAGTGC | + |
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Preference number: 6 (lower is better) Translates to: SRSPQPASLSFL*LLTHHTQISQC Trigger: GCACTGTGAGATCTGTGTATGGTGTGTTAATAACAATAAGAAACTTAGGGAAGCAGGCTGTGGACTTCTGGA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000378572.8 |
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| CDS CAA 90 bp | GTTGGTAATTCCAGAAGTCCACAGCCTGCTTCCCTAAGTTTCTTATaGTTATTAACACACCATACACAGATCTCACAGTGCATTGTACTC | + |
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Preference number: 6 (lower is better) Translates to: VGNSRSPQPASLSFL*LLTHHTQISQCIVL Trigger: GAGTACAATGCACTGTGAGATCTGTGTATGGTGTGTTAATAACAATAAGAAACTTAGGGAAGCAGGCTGTGGACTTCTGGAATTACCAAC 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000378572.8 |
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