RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for PROSER2 (Homo sapiens)

Ensembl gene IDs: ENSG00000148426

Ensembl transcript IDs: ENST00000277570.10, ENST00000379200.1, ENST00000444604.1, ENST00000474155.1, ENST00000622831.4

Found 259 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp GGGAGACAAGCCCTCGGCCAGATTCCTTTAGGGAAGAGTTCTCTGTaGCGGTGGCTGGAGCTTGCGGTGCGTGCTCAGCCAGGAGGCCCC +
Preference number: 1 (lower is better)
Translates to: GRQALGQIPLGKSSL*RWLELAVRAQPGGP
Trigger: GGGGCCTCCTGGCTGAGCACGCACCGCAAGCTCCAGCCACCGGCACAGAGAACTCTTCCCTAAAGGAATCTGGCCGAGGGCTTGTCTCCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000277570.10
ENST00000379200.1
ENST00000622831.4
3UTR GCA 90 bp CTCTGTTACGGCGCTGGCGGAGACATAAAAACACAAAGGTGTCACTaGTCAGGGCAGCCCTTCCTGTCTATTTTTAGAGGTCTAAGACTC +
Preference number: 1 (lower is better)
Translates to: LCYGAGGDIKTQRCH*SGQPFLSIFRGLRL
Trigger: GAGTCTTAGACCTCTAAAAATAGACAGGAAGGGCTGCCCTGAGCAGTGACACCTTTGTGTTTTTATGTCTCCGCCAGCGCCGTAACAGAG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENST00000277570.10
3UTR CCA 90 bp TCTGGGAGGAAACCGGTTCTTTTCCTGCTGTGTAACCTCATTCACTaGTTTTTCCCTACCCTGAGATCTTGCTTGTGGAACATGACAGTC +
Preference number: 1 (lower is better)
Translates to: SGRKPVLFLLCNLIH*FFPTLRSCLWNMTV
Trigger: GACTGTCATGTTCCACAAGCAAGATCTCAGGGTAGGGAAAAACCAGTGAATGAGGTTACACAGCAGGAAAAGAACCGGTTTCCTCCCAGA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000277570.10
3UTR TCA 90 bp TCCATACTAGGAAGTAACAATTTCTTGTATCATCCATCAGGATGCTaGGGTGGCTCTGTCTACCCAAGAATAGGAAGCGCTGGCATCCTG +
Preference number: 1 (lower is better)
Translates to: SILGSNNFLYHPSGC*GGSVYPRIGSAGIL
Trigger: CAGGATGCCAGCGCTTCCTATTCTTGGGTAGACAGAGCCACCTCAGCATCCTGATGGATGATACAAGAAATTGTTACTTCCTAGTATGGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000277570.10
3UTR TCA 90 bp AAGGGATCTGAACTTTCATGTCATGTACTTCGAGAAGAGGGTAGATaGGACTCAAGAATGATAATCAGACCAGTCCTACTCCTCCCAACC +
Preference number: 1 (lower is better)
Translates to: KGSELSCHVLREEGR*DSRMIIRPVLLLPT
Trigger: GGTTGGGAGGAGTAGGACTGGTCTGATTATCATTCTTGAGTCTCATCTACCCTCTTCTCGAAGTACATGACATGAAAGTTCAGATCCCTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000277570.10
ENST00000379200.1
ENST00000622831.4
3UTR GCA 90 bp TCTTGCTTGTGGAACATGACAGTCGGTGGATCTTTAAGAATCTTTTaGTTCCTTCTGTTGACTGGCTACCTCGGAACATGCAGAACTAAA +
Preference number: 1 (lower is better)
Translates to: SCLWNMTVGGSLRIF*FLLLTGYLGTCRTK
Trigger: TTTAGTTCTGCATGTTCCGAGGTAGCCAGTCAACAGAAGGAAGCAAAAGATTCTTAAAGATCCACCGACTGTCATGTTCCACAAGCAAGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000277570.10
3UTR GCA 90 bp TCGGTTGTATCAAGACCTTCTATTATTGAACACTGTATGGCATCTTaGCTTGTAAAGAGCAAACACAGCCCTTATAAATCCTTTAAACCA +
Preference number: 1 (lower is better)
Translates to: SVVSRPSIIEHCMAS*LVKSKHSPYKSFKP
Trigger: TGGTTTAAAGGATTTATAAGGGCTGTGTTTGCTCTTTACAAGGCAAGATGCCATACAGTGTTCAATAATAGAAGGTCTTGATACAACCGA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000277570.10
3UTR-3UTR GCA 90 bp AGGGAGACAAGCCCTCGGCCAGATTCCTTTAGGGAAGAGTTCTCTGTGCCGGTGGGAGCTTGCGGTGCGTaGTCAGCCAGGAGGCCCCAG +
Preference number: 2 (lower is better)
Translates to: RETSPRPDSFREEFSVPVGACGA*SARRPQ
Trigger: CTGGGGCCTCCTGGCTGAGCACGCACCGCAAGCTCC...CACCGGCACAGAGAACTCTTCCCTAAAGGAATCTGGCCGAGGGCTTGTCTCCCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000277570.10
ENST00000379200.1
ENST00000622831.4
3UTR-3UTR CCA 90 bp CCCGCTGTCACTTCCATTTTAGACCAAACAGCTCCTGGGTGCAGCGACTCTTTCTGGGGAGAAACGGGGTaGACTGGAGCCCGCGCGGCC +
Preference number: 2 (lower is better)
Translates to: PAVTSILDQTAPGCSDSFWGETG*TGARAA
Trigger: GGCCGCGCGGGCTCCAGTCCACCCCGTTTCTCCCCA...GAAAGAGTCGCTGCACCCAGGAGCTGTTTGGTCTAAAATGGAAGTGACAGCGGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENST00000277570.10
ENST00000379200.1
ENST00000622831.4
3UTR-3UTR CCA 90 bp GCTGTCACTTCCATTTTAGACCAAACAGCTCCTGGGTGCAGCGACTCTTTCACCTGGGGAGAAACGGGGTaGACTGGAGCCCGCGCGGCC +
Preference number: 2 (lower is better)
Translates to: AVTSILDQTAPGCSDSFTWGETG*TGARAA
Trigger: GGCCGCGCGGGCTCCAGTCCACCCCGTTTCTCCCCA...GGTGAAAGAGTCGCTGCACCCAGGAGCTGTTTGGTCTAAAATGGAAGTGACAGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENST00000277570.10
ENST00000379200.1
ENST00000622831.4
3UTR-3UTR CCA 90 bp CTGGTTTTTCCCTACCCTGAGATCTTGCTTGTGGAACATGACAGTCGGTGGATCTGGGGAGAAACGGGGTaGACTGGAGCCCGCGCGGCC +
Preference number: 2 (lower is better)
Translates to: LVFPYPEILLVEHDSRWIWGETG*TGARAA
Trigger: GGCCGCGCGGGCTCCAGTCCACCCCGTTTCTCCCCA...GATCCACCGACTGTCATGTTCCACAAGCAAGATCTCAGGGTAGGGAAAAACCAG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000277570.10
3UTR-3UTR GCA 90 bp AGGGAGACAAGCCCTCGGCCAGATTCCTTTAGGGAAGAGTTCTCTGTGCCGGTGCAAACAGCTCCTGGGTaGAGCGACTCTTTCACCCTC +
Preference number: 2 (lower is better)
Translates to: RETSPRPDSFREEFSVPVQTAPG*SDSFTL
Trigger: GAGGGTGAAAGAGTCGCTGCACCCAGGAGCTGTTTG...CACCGGCACAGAGAACTCTTCCCTAAAGGAATCTGGCCGAGGGCTTGTCTCCCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000277570.10
ENST00000379200.1
ENST00000622831.4
3UTR-3UTR GCA 90 bp TTTCCCTACCCTGAGATCTTGCTTGTGGAACATGACAGTCGGTGGATCTTTAAGGGCTGGAGCTTGCGGTaGGTGCTCAGCCAGGAGGCC +
Preference number: 2 (lower is better)
Translates to: FPYPEILLVEHDSRWIFKGWSLR*VLSQEA
Trigger: GGCCTCCTGGCTGAGCACGCACCGCAAGCTCCAGCC...CTTAAAGATCCACCGACTGTCATGTTCCACAAGCAAGATCTCAGGGTAGGGAAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000277570.10
3UTR-3UTR CCA 90 bp AGGGAGACAAGCCCTCGGCCAGATTCCTTTAGGGAAGAGTTCTCTGTGCCGGTGAGACCAAACAGCTCCTaGGTGCAGCGACTCTTTCAC +
Preference number: 2 (lower is better)
Translates to: RETSPRPDSFREEFSVPVRPNSS*VQRLFH
Trigger: GTGAAAGAGTCGCTGCACCCAGGAGCTGTTTGGTCT...CACCGGCACAGAGAACTCTTCCCTAAAGGAATCTGGCCGAGGGCTTGTCTCCCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000277570.10
ENST00000379200.1
ENST00000622831.4
3UTR-3UTR GCA 90 bp CTGAGTGGAAGGGATCTGAACTTTCATGTCATGTACTTCGAGAAGAGGGTAGATGGAGCTTGCGGTGCGTaGTCAGCCAGGAGGCCCCAG +
Preference number: 2 (lower is better)
Translates to: LSGRDLNFHVMYFEKRVDGACGA*SARRPQ
Trigger: CTGGGGCCTCCTGGCTGAGCACGCACCGCAAGCTCC...ATCTACCCTCTTCTCGAAGTACATGACATGAAAGTTCAGATCCCTTCCACTCAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000277570.10
ENST00000379200.1
ENST00000622831.4
3UTR-3UTR GCA 90 bp TCACGGAAACCTATGGGTCTAACAGGTTATTCTCTCTCTCTCAGTTCTTGGGAACCGGTGGCTGGAGCTTaGGGTGCGTGCTCAGCCAGG +
Preference number: 2 (lower is better)
Translates to: SRKPMGLTGYSLSLSSWEPVAGA*GACSAR
Trigger: CCTGGCTGAGCACGCACCGCAAGCTCCAGCCACCGG...TTCCCAAGAACTGAGAGAGAGAGAATAACCTGTTAGACCCATAGGTTTCCGTGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000277570.10
ENST00000379200.1
ENST00000622831.4
3UTR-3UTR GCA 90 bp ACGGAAACCTATGGGTCTAACAGGTTATTCTCTCTCTCTCAGTTCTTGGGAAAAGGCTGGAGCTTGCGGTaGGTGCTCAGCCAGGAGGCC +
Preference number: 2 (lower is better)
Translates to: TETYGSNRLFSLSQFLGKGWSLR*VLSQEA
Trigger: GGCCTCCTGGCTGAGCACGCACCGCAAGCTCCAGCC...TTTTCCCAAGAACTGAGAGAGAGAGAATAACCTGTTAGACCCATAGGTTTCCGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000277570.10
ENST00000379200.1
ENST00000622831.4
3UTR-3UTR GCA 90 bp ACGGAAACCTATGGGTCTAACAGGTTATTCTCTCTCTCTCAGTTCTTGGGAAAACCGGTGGCTGGAGCTTaGGGTGCGTGCTCAGCCAGG +
Preference number: 2 (lower is better)
Translates to: TETYGSNRLFSLSQFLGKPVAGA*GACSAR
Trigger: CCTGGCTGAGCACGCACCGCAAGCTCCAGCCACCGG...TTTTCCCAAGAACTGAGAGAGAGAGAATAACCTGTTAGACCCATAGGTTTCCGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000277570.10
ENST00000379200.1
ENST00000622831.4
3UTR-3UTR GCA 90 bp CAACCCCCAAAAGATGGCATTTACACATCACGGAAACCTATGGGTCTAACAGGTGGGAAGAGTTCTCTGTaGCGGTGGCTGGAGCTTGCG +
Preference number: 2 (lower is better)
Translates to: QPPKDGIYTSRKPMGLTGGKSSL*RWLELA
Trigger: CGCAAGCTCCAGCCACCGGCACAGAGAACTCTTCCC...ACCTGTTAGACCCATAGGTTTCCGTGATGTGTAAATGCCATCTTTTGGGGGTTG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000277570.10
ENST00000379200.1
ENST00000622831.4
3UTR-3UTR GCA 90 bp CTTAGAAAAGGCGGCGAGAATCCTGAGTGGAAGGGATCTGAACTTTCATGTCATGGGAAGAGTTCTCTGTaGCGGTGGCTGGAGCTTGCG +
Preference number: 2 (lower is better)
Translates to: LRKGGENPEWKGSELSCHGKSSL*RWLELA
Trigger: CGCAAGCTCCAGCCACCGGCACAGAGAACTCTTCCC...ATGACATGAAAGTTCAGATCCCTTCCACTCAGGATTCTCGCCGCCTTTTCTAAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000277570.10
ENST00000379200.1
ENST00000622831.4
3UTR-3UTR CCA 90 bp ACGGAAACCTATGGGTCTAACAGGTTATTCTCTCTCTCTCAGTTCTTGGGAAAACTCTGTGCCGGTGGCTaGAGCTTGCGGTGCGTGCTC +
Preference number: 2 (lower is better)
Translates to: TETYGSNRLFSLSQFLGKLCAGG*SLRCVL
Trigger: GAGCACGCACCGCAAGCTCCAGCCACCGGCACAGAG...TTTTCCCAAGAACTGAGAGAGAGAGAATAACCTGTTAGACCCATAGGTTTCCGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000277570.10
ENST00000379200.1
ENST00000622831.4
3UTR-3UTR CCA 90 bp TCCCAACCCCCAAAAGATGGCATTTACACATCACGGAAACCTATGGGTCTAACAAGTTCTCTGTGCCGGTaGCTGGAGCTTGCGGTGCGT +
Preference number: 2 (lower is better)
Translates to: SQPPKDGIYTSRKPMGLTSSLCR*LELAVR
Trigger: ACGCACCGCAAGCTCCAGCCACCGGCACAGAGAACT...TGTTAGACCCATAGGTTTCCGTGATGTGTAAATGCCATCTTTTGGGGGTTGGGA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000277570.10
ENST00000379200.1
ENST00000622831.4
3UTR-3UTR CCA 90 bp CAACCCCCAAAAGATGGCATTTACACATCACGGAAACCTATGGGTCTAACAGGTAGTTCTCTGTGCCGGTaGCTGGAGCTTGCGGTGCGT +
Preference number: 2 (lower is better)
Translates to: QPPKDGIYTSRKPMGLTGSSLCR*LELAVR
Trigger: ACGCACCGCAAGCTCCAGCCACCGGCACAGAGAACT...ACCTGTTAGACCCATAGGTTTCCGTGATGTGTAAATGCCATCTTTTGGGGGTTG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000277570.10
ENST00000379200.1
ENST00000622831.4
3UTR-3UTR CCA 90 bp CAACCCCCAAAAGATGGCATTTACACATCACGGAAACCTATGGGTCTAACAGGTACCCTCTCTTCAGGGTaGGGAGAAACGGGGTGGACT +
Preference number: 2 (lower is better)
Translates to: QPPKDGIYTSRKPMGLTGTLSSG*GETGWT
Trigger: AGTCCACCCCGTTTCTCCCCACCCTGAAGAGAGGGT...ACCTGTTAGACCCATAGGTTTCCGTGATGTGTAAATGCCATCTTTTGGGGGTTG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENST00000277570.10
ENST00000379200.1
ENST00000622831.4
3UTR-3UTR CCA 90 bp GCGAGAATCCTGAGTGGAAGGGATCTGAACTTTCATGTCATGTACTTCGAGAAGAGACCAAACAGCTCCTaGGTGCAGCGACTCTTTCAC +
Preference number: 2 (lower is better)
Translates to: ARILSGRDLNFHVMYFEKRPNSS*VQRLFH
Trigger: GTGAAAGAGTCGCTGCACCCAGGAGCTGTTTGGTCT...CTTCTCGAAGTACATGACATGAAAGTTCAGATCCCTTCCACTCAGGATTCTCGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000277570.10
ENST00000379200.1
ENST00000622831.4
3UTR-3UTR CCA 90 bp ACGGGAAAGAAACAGGCTCTGTTACGGCGCTGGCGGAGACATAAAAACACAAAGGGCGAGAATCCTGAGTaGAAGGGATCTGAACTTTCA +
Preference number: 2 (lower is better)
Translates to: TGKKQALLRRWRRHKNTKGENPE*KGSELS
Trigger: TGAAAGTTCAGATCCCTTCCACTCAGGATTCTCGCC...CTTTGTGTTTTTATGTCTCCGCCAGCGCCGTAACAGAGCCTGTTTCTTTCCCGT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000277570.10
3UTR-3UTR GCA 90 bp ACGGAAACCTATGGGTCTAACAGGTTATTCTCTCTCTCTCAGTTCTTGGGAAAACAAACAGCTCCTGGGTaGAGCGACTCTTTCACCCTC +
Preference number: 2 (lower is better)
Translates to: TETYGSNRLFSLSQFLGKQTAPG*SDSFTL
Trigger: GAGGGTGAAAGAGTCGCTGCACCCAGGAGCTGTTTG...TTTTCCCAAGAACTGAGAGAGAGAGAATAACCTGTTAGACCCATAGGTTTCCGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000277570.10
ENST00000379200.1
ENST00000622831.4
3UTR-3UTR GCA 90 bp CCAAAAGATGGCATTTACACATCACGGAAACCTATGGGTCTAACAGGTTATTCTCAAACAGCTCCTGGGTaGAGCGACTCTTTCACCCTC +
Preference number: 2 (lower is better)
Translates to: PKDGIYTSRKPMGLTGYSQTAPG*SDSFTL
Trigger: GAGGGTGAAAGAGTCGCTGCACCCAGGAGCTGTTTG...AGAATAACCTGTTAGACCCATAGGTTTCCGTGATGTGTAAATGCCATCTTTTGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000277570.10
ENST00000379200.1
ENST00000622831.4
3UTR-3UTR GCA 90 bp TTAAGCCTGAATTTAAGTAATACTCAACGGGAAAGAAACAGGCTCTGTTACGGCACACAAAGGTGTCACTaGTCAGGGCAGCCCTTCCTG +
Preference number: 2 (lower is better)
Translates to: LSLNLSNTQRERNRLCYGTQRCH*SGQPFL
Trigger: CAGGAAGGGCTGCCCTGAGCAGTGACACCTTTGTGT...GCCGTAACAGAGCCTGTTTCTTTCCCGTTGAGTATTACTTAAATTCAGGCTTAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000277570.10
3UTR-3UTR CCA 90 bp CACAGGATACCTATGCATGTATGTGTTGACACGTACGTATCTAAAAACATACACACCCTCTCTTCAGGGTaGGGAGAAACGGGGTGGACT +
Preference number: 2 (lower is better)
Translates to: HRIPMHVCVDTYVSKNIHTLSSG*GETGWT
Trigger: AGTCCACCCCGTTTCTCCCCACCCTGAAGAGAGGGT...GTGTATGTTTTTAGATACGTACGTGTCAACACATACATGCATAGGTATCCTGTG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000277570.10
3UTR-3UTR CCA 90 bp ACGGGAAAGAAACAGGCTCTGTTACGGCGCTGGCGGAGACATAAAAACACAAAGTTCACCAAAATATCATaGAGACGTGTCCTTAAGACA +
Preference number: 2 (lower is better)
Translates to: TGKKQALLRRWRRHKNTKFTKIS*RRVLKT
Trigger: TGTCTTAAGGACACGTCTCCATGATATTTTGGTGAA...CTTTGTGTTTTTATGTCTCCGCCAGCGCCGTAACAGAGCCTGTTTCTTTCCCGT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000277570.10
3UTR CAA 90 bp CTGTGTAACCTCATTCACTGGTTTTTCCCTACCCTGAGATCTTGCTaGTGGAACATGACAGTCGGTGGATCTTTAAGAATCTTTTGCTTC +
Preference number: 2 (lower is better)
Translates to: LCNLIHWFFPTLRSC*WNMTVGGSLRIFCF
Trigger: GAAGCAAAAGATTCTTAAAGATCCACCGACTGTCATGTTCCACAAGCAAGATCTCAGGGTAGGGAAAAACCAGTGAATGAGGTTACACAG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000277570.10
3UTR-3UTR TCA 90 bp GCACATTTAAGCCTGAATTTAAGTAATACTCAACGGGAAAGAAACAGGCTCTGTGGTTTTTCCCTACCCTaGGATCTTGCTTGTGGAACA +
Preference number: 2 (lower is better)
Translates to: AHLSLNLSNTQRERNRLCGFSLP*DLACGT
Trigger: TGTTCCACAAGCAAGATCTCAGGGTAGGGAAAAACC...ACAGAGCCTGTTTCTTTCCCGTTGAGTATTACTTAAATTCAGGCTTAAATGTGC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000277570.10
3UTR-3UTR TCA 90 bp CTGGCATCCTGTAGTGACTTAGGAGGGTGTTCAGAAGTTTCTATTTATATAATACGAGAAGAGGGTAGATaGGACTCAAGAATGATAATC +
Preference number: 2 (lower is better)
Translates to: LASCSDLGGCSEVSIYIIREEGR*DSRMII
Trigger: GATTATCATTCTTGAGTCTCATCTACCCTCTTCTCG...TATTATATAAATAGAAACTTCTGAACACCCTCCTAAGTCACTACAGGATGCCAG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000277570.10
3UTR-3UTR CCA 90 bp TTAAGCCTGAATTTAAGTAATACTCAACGGGAAAGAAACAGGCTCTGTTACGGCGAACATGACAGTCGGTaGATCTTTAAGAATCTTTTG +
Preference number: 2 (lower is better)
Translates to: LSLNLSNTQRERNRLCYGEHDSR*IFKNLL
Trigger: CAAAAGATTCTTAAAGATCCACCGACTGTCATGTTC...GCCGTAACAGAGCCTGTTTCTTTCCCGTTGAGTATTACTTAAATTCAGGCTTAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000277570.10
3UTR CCA 72 bp CCTGGGTGCAGCGACTCTTTCACCCTCTCTTCAGGGTaGGGAGAAACGGGGTGGACTGGAGCCCGCGCGGCC +
Preference number: 3 (lower is better)
Translates to: PGCSDSFTLSSG*GETGWTGARAA
Trigger: GGCCGCGCGGGCTCCAGTCCACCCCGTTTCTCCCCACCCTGAAGAGAGGGTGAAAGAGTCGCTGCACCCAGG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000277570.10
ENST00000379200.1
ENST00000622831.4
3UTR GCA 72 bp GCCCTCGGCCAGATTCCTTTAGGGAAGAGTTCTCTGTaGCGGTGGCTGGAGCTTGCGGTGCGTGCTCAGCCA +
Preference number: 3 (lower is better)
Translates to: ALGQIPLGKSSL*RWLELAVRAQP
Trigger: TGGCTGAGCACGCACCGCAAGCTCCAGCCACCGGCACAGAGAACTCTTCCCTAAAGGAATCTGGCCGAGGGC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000277570.10
ENST00000379200.1
ENST00000622831.4
3UTR CCA 72 bp GGCCAGATTCCTTTAGGGAAGAGTTCTCTGTGCCGGTaGCTGGAGCTTGCGGTGCGTGCTCAGCCAGGAGGC +
Preference number: 3 (lower is better)
Translates to: GQIPLGKSSLCR*LELAVRAQPGG
Trigger: GCCTCCTGGCTGAGCACGCACCGCAAGCTCCAGCCACCGGCACAGAGAACTCTTCCCTAAAGGAATCTGGCC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000277570.10
ENST00000379200.1
ENST00000622831.4
3UTR-3UTR CAA 90 bp CAACCCCCAAAAGATGGCATTTACACATCACGGAAACCTATGGGTCTAACAGGTGCCGGTGGCTGGAGCTaGCGGTGCGTGCTCAGCCAG +
Preference number: 3 (lower is better)
Translates to: QPPKDGIYTSRKPMGLTGAGGWS*RCVLSQ
Trigger: CTGGCTGAGCACGCACCGCAAGCTCCAGCCACCGGC...ACCTGTTAGACCCATAGGTTTCCGTGATGTGTAAATGCCATCTTTTGGGGGTTG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000277570.10
ENST00000379200.1
ENST00000622831.4
3UTR GCA 72 bp GGCGCTGGCGGAGACATAAAAACACAAAGGTGTCACTaGTCAGGGCAGCCCTTCCTGTCTATTTTTAGAGGT +
Preference number: 3 (lower is better)
Translates to: GAGGDIKTQRCH*SGQPFLSIFRG
Trigger: ACCTCTAAAAATAGACAGGAAGGGCTGCCCTGAGCAGTGACACCTTTGTGTTTTTATGTCTCCGCCAGCGCC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENST00000277570.10
3UTR CCA 72 bp TACTCAACGGGAAAGAAACAGGCTCTGTTACGGCGCTaGCGGAGACATAAAAACACAAAGGTGTCACTGCTC +
Preference number: 3 (lower is better)
Translates to: YSTGKKQALLRR*RRHKNTKVSLL
Trigger: GAGCAGTGACACCTTTGTGTTTTTATGTCTCCGCCAGCGCCGTAACAGAGCCTGTTTCTTTCCCGTTGAGTA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000277570.10
3UTR TCA 72 bp GGAAGTAACAATTTCTTGTATCATCCATCAGGATGCTaGGGTGGCTCTGTCTACCCAAGAATAGGAAGCGCT +
Preference number: 3 (lower is better)
Translates to: GSNNFLYHPSGC*GGSVYPRIGSA
Trigger: AGCGCTTCCTATTCTTGGGTAGACAGAGCCACCTCAGCATCCTGATGGATGATACAAGAAATTGTTACTTCC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000277570.10
3UTR CCA 72 bp TACCCTGAGATCTTGCTTGTGGAACATGACAGTCGGTaGATCTTTAAGAATCTTTTGCTTCCTTCTGTTGAC +
Preference number: 3 (lower is better)
Translates to: YPEILLVEHDSR*IFKNLLLPSVD
Trigger: GTCAACAGAAGGAAGCAAAAGATTCTTAAAGATCCACCGACTGTCATGTTCCACAAGCAAGATCTCAGGGTA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000277570.10
3UTR TCA 72 bp GAACTTTCATGTCATGTACTTCGAGAAGAGGGTAGATaGGACTCAAGAATGATAATCAGACCAGTCCTACTC +
Preference number: 3 (lower is better)
Translates to: ELSCHVLREEGR*DSRMIIRPVLL
Trigger: GAGTAGGACTGGTCTGATTATCATTCTTGAGTCTCATCTACCCTCTTCTCGAAGTACATGACATGAAAGTTC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000277570.10
ENST00000379200.1
ENST00000622831.4
3UTR CCA 72 bp ATTCACTGGTTTTTCCCTACCCTGAGATCTTGCTTGTaGAACATGACAGTCGGTGGATCTTTAAGAATCTTT +
Preference number: 3 (lower is better)
Translates to: IHWFFPTLRSCL*NMTVGGSLRIF
Trigger: AAAGATTCTTAAAGATCCACCGACTGTCATGTTCCACAAGCAAGATCTCAGGGTAGGGAAAAACCAGTGAAT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000277570.10
3UTR CCA 72 bp TATTATTTTCTTAGAAAAGGCGGCGAGAATCCTGAGTaGAAGGGATCTGAACTTTCATGTCATGTACTTCGA +
Preference number: 3 (lower is better)
Translates to: YYFLRKGGENPE*KGSELSCHVLR
Trigger: TCGAAGTACATGACATGAAAGTTCAGATCCCTTCCACTCAGGATTCTCGCCGCCTTTTCTAAGAAAATAATA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000277570.10
ENST00000379200.1
ENST00000622831.4
3UTR GCA 72 bp TCAAGACCTTCTATTATTGAACACTGTATGGCATCTTaGCTTGTAAAGAGCAAACACAGCCCTTATAAATCC +
Preference number: 3 (lower is better)
Translates to: SRPSIIEHCMAS*LVKSKHSPYKS
Trigger: GGATTTATAAGGGCTGTGTTTGCTCTTTACAAGGCAAGATGCCATACAGTGTTCAATAATAGAAGGTCTTGA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000277570.10
3UTR GCA 72 bp TATAATAATGATGCATGTGGACACACAGGATACCTATaGATGTATGTGTTGACACGTACGTATCTAAAAACA +
Preference number: 3 (lower is better)
Translates to: YNNDACGHTGYL*MYVLTRTYLKT
Trigger: TGTTTTTAGATACGTACGTGTCAACACATACATGCATAGGTATCCTGTGTGTCCACATGCATCATTATTATA
36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000277570.10
CDS-3UTR GCA 90 bp TTCTCTGTGCCGGTGGCTGGAGCTTGCGGTGCGTGCTCAGCCAGGAGGCCCCAGGCTGGGGAAGCGGGGTaGCTTGGGCTGCGCCGGGTG +
Preference number: 4 (lower is better)
Translates to: FSVPVAGACGACSARRPQAGEAG*LGLRRV
Trigger: CACCCGGCGCAGCCCAAGGCACCCCGCTTCCCCAGC...CTGGGGCCTCCTGGCTGAGCACGCACCGCAAGCTCCAGCCACCGGCACAGAGAA
71% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000277570.10
ENST00000379200.1
CDS-3UTR GCA 90 bp AGTTCTCTGTGCCGGTGGCTGGAGCTTGCGGTGCGTGCTCAGCCAGGAGGCCCCCCGCGGCCCGCGAACTaGACGGTGATGCCCTGGGGC +
Preference number: 4 (lower is better)
Translates to: SSLCRWLELAVRAQPGGPPRPAN*TVMPWG
Trigger: GCCCCAGGGCATCACCGTGCAGTTCGCGGGCCGCGG...GGGGCCTCCTGGCTGAGCACGCACCGCAAGCTCCAGCCACCGGCACAGAGAACT
71% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENST00000277570.10
ENST00000379200.1
ENST00000622831.4
CDS-3UTR CCA 90 bp AGTTCTCTGTGCCGGTGGCTGGAGCTTGCGGTGCGTGCTCAGCCAGGAGGCCCCCACTTGGGAAGCCGTTaGCCAGCGCCGGGCCCCGCG +
Preference number: 4 (lower is better)
Translates to: SSLCRWLELAVRAQPGGPHLGSR*PAPGPA
Trigger: CGCGGGGCCCGGCGCTGGCCAACGGCTTCCCAAGTG...GGGGCCTCCTGGCTGAGCACGCACCGCAAGCTCCAGCCACCGGCACAGAGAACT
71% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000277570.10
ENST00000379200.1
CDS-3UTR CCA 90 bp TTCTCTGTGCCGGTGGCTGGAGCTTGCGGTGCGTGCTCAGCCAGGAGGCCCCAGCACTTGGGAAGCCGTTaGCCAGCGCCGGGCCCCGCG +
Preference number: 4 (lower is better)
Translates to: FSVPVAGACGACSARRPQHLGSR*PAPGPA
Trigger: CGCGGGGCCCGGCGCTGGCCAACGGCTTCCCAAGTG...CTGGGGCCTCCTGGCTGAGCACGCACCGCAAGCTCCAGCCACCGGCACAGAGAA
71% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000277570.10
ENST00000379200.1
CDS-3UTR GCA 90 bp TTCTCTGTGCCGGTGGCTGGAGCTTGCGGTGCGTGCTCAGCCAGGAGGCCCCAGCGGAGCCTGACCCCCTaGCCGGAGACTCTCAGCGGG +
Preference number: 4 (lower is better)
Translates to: FSVPVAGACGACSARRPQRSLTP*PETLSG
Trigger: CCCGCTGAGAGTCTCCGGGCAGGGGGTCAGGCTCCG...CTGGGGCCTCCTGGCTGAGCACGCACCGCAAGCTCCAGCCACCGGCACAGAGAA
70% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000277570.10
ENST00000379200.1
CDS-3UTR CCA 90 bp TTCTCTGTGCCGGTGGCTGGAGCTTGCGGTGCGTGCTCAGCCAGGAGGCCCCAGGGCCTCGTGCGCACTTaGGAAGCCGTTGGCCAGCGC +
Preference number: 4 (lower is better)
Translates to: FSVPVAGACGACSARRPQGLVRT*EAVGQR
Trigger: GCGCTGGCCAACGGCTTCCCAAGTGCGCACGAGGCC...CTGGGGCCTCCTGGCTGAGCACGCACCGCAAGCTCCAGCCACCGGCACAGAGAA
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000277570.10
ENST00000379200.1
ENST00000622831.4
CDS-3UTR CCA 90 bp TTCTCTGTGCCGGTGGCTGGAGCTTGCGGTGCGTGCTCAGCCAGGAGGCCCCAGCGGGCGCGAAGGAGCTaGGTGCGCTCTTCAGGGCCT +
Preference number: 4 (lower is better)
Translates to: FSVPVAGACGACSARRPQRARRS*VRSSGP
Trigger: AGGCCCTGAAGAGCGCACCCAGCTCCTTCGCGCCCG...CTGGGGCCTCCTGGCTGAGCACGCACCGCAAGCTCCAGCCACCGGCACAGAGAA
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000277570.10
ENST00000379200.1
ENST00000622831.4
CDS-3UTR GCA 90 bp TTCTCTGTGCCGGTGGCTGGAGCTTGCGGTGCGTGCTCAGCCAGGAGGCCCCAGAGGTGCAGGCCCTGCTaGCTGGGTCCCCTCTGGAAG +
Preference number: 4 (lower is better)
Translates to: FSVPVAGACGACSARRPQRCRPC*LGPLWK
Trigger: CTTCCAGAGGGGACCCAGGCAGCAGGGCCTGCACCT...CTGGGGCCTCCTGGCTGAGCACGCACCGCAAGCTCCAGCCACCGGCACAGAGAA
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000277570.10
ENST00000622831.4
CDS-3UTR GCA 90 bp TTCTCTGTGCCGGTGGCTGGAGCTTGCGGTGCGTGCTCAGCCAGGAGGCCCCAGCGCGAAGGAGCTGGGTaGGCTCTTCAGGGCCTCGTG +
Preference number: 4 (lower is better)
Translates to: FSVPVAGACGACSARRPQREGAG*ALQGLV
Trigger: CACGAGGCCCTGAAGAGCGCACCCAGCTCCTTCGCG...CTGGGGCCTCCTGGCTGAGCACGCACCGCAAGCTCCAGCCACCGGCACAGAGAA
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000277570.10
ENST00000379200.1
ENST00000622831.4
CDS-3UTR CCA 90 bp TTCTCTGTGCCGGTGGCTGGAGCTTGCGGTGCGTGCTCAGCCAGGAGGCCCCAGCTCTGTGCCGGTGGCTaGAGCTTGCGGTGCGTGCTC +
Preference number: 4 (lower is better)
Translates to: FSVPVAGACGACSARRPQLCAGG*SLRCVL
Trigger: GAGCACGCACCGCAAGCTCCAGCCACCGGCACAGAG...CTGGGGCCTCCTGGCTGAGCACGCACCGCAAGCTCCAGCCACCGGCACAGAGAA
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000277570.10
ENST00000379200.1
ENST00000622831.4
CDS-3UTR GCA 90 bp TTAGGGAAGAGTTCTCTGTGCCGGTGGCTGGAGCTTGCGGTGCGTGCTCAGCCACCGCGGCCCGCGAACTaGACGGTGATGCCCTGGGGC +
Preference number: 4 (lower is better)
Translates to: LGKSSLCRWLELAVRAQPPRPAN*TVMPWG
Trigger: GCCCCAGGGCATCACCGTGCAGTTCGCGGGCCGCGG...TGGCTGAGCACGCACCGCAAGCTCCAGCCACCGGCACAGAGAACTCTTCCCTAA
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000277570.10
ENST00000379200.1
ENST00000622831.4
CDS-3UTR CCA 90 bp AGTTCTCTGTGCCGGTGGCTGGAGCTTGCGGTGCGTGCTCAGCCAGGAGGCCCCCAGGCTCGGAGGGACTaGAGGTGCTCTCCTCCAGAG +
Preference number: 4 (lower is better)
Translates to: SSLCRWLELAVRAQPGGPQARRD*RCSPPE
Trigger: CTCTGGAGGAGAGCACCTCCAGTCCCTCCGAGCCTG...GGGGCCTCCTGGCTGAGCACGCACCGCAAGCTCCAGCCACCGGCACAGAGAACT
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000277570.10
ENST00000622831.4
CDS-3UTR CCA 90 bp TTCTCTGTGCCGGTGGCTGGAGCTTGCGGTGCGTGCTCAGCCAGGAGGCCCCAGGGTGCTAGGCAGGGGTaGTGGCGCAAGAAGGGTCTC +
Preference number: 4 (lower is better)
Translates to: FSVPVAGACGACSARRPQGARQG*WRKKGL
Trigger: GAGACCCTTCTTGCGCCACCACCCCTGCCTAGCACC...CTGGGGCCTCCTGGCTGAGCACGCACCGCAAGCTCCAGCCACCGGCACAGAGAA
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000277570.10
ENST00000622831.4
CDS-3UTR CCA 90 bp TTTAGGGAAGAGTTCTCTGTGCCGGTGGCTGGAGCTTGCGGTGCGTGCTCAGCCGGAAGCGGGGTGCCTTaGGCTGCGCCGGGTGGCTGG +
Preference number: 4 (lower is better)
Translates to: FREEFSVPVAGACGACSAGSGVP*AAPGGW
Trigger: CCAGCCACCCGGCGCAGCCCAAGGCACCCCGCTTCC...GGCTGAGCACGCACCGCAAGCTCCAGCCACCGGCACAGAGAACTCTTCCCTAAA
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000277570.10
ENST00000379200.1
CDS-3UTR GCA 90 bp AGTTCTCTGTGCCGGTGGCTGGAGCTTGCGGTGCGTGCTCAGCCAGGAGGCCCCGCCAGCAGCCCATTCTaGGGCAACAGCTCACTCCTC +
Preference number: 4 (lower is better)
Translates to: SSLCRWLELAVRAQPGGPASSPF*GNSSLL
Trigger: GAGGAGTGAGCTGTTGCCGCAGAATGGGCTGCTGGC...GGGGCCTCCTGGCTGAGCACGCACCGCAAGCTCCAGCCACCGGCACAGAGAACT
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000277570.10
ENST00000622831.4
CDS-3UTR GCA 90 bp GGGAGACAAGCCCTCGGCCAGATTCCTTTAGGGAAGAGTTCTCTGTGCCGGTGGTGCGCCCTGCGCTCCTaGACGCTGACGGCCGCCCTG +
Preference number: 4 (lower is better)
Translates to: GRQALGQIPLGKSSLCRWCALRS*TLTAAL
Trigger: CAGGGCGGCCGTCAGCGTGCAGGAGCGCAGGGCGCA...CCACCGGCACAGAGAACTCTTCCCTAAAGGAATCTGGCCGAGGGCTTGTCTCCC
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000277570.10
ENST00000379200.1
CDS-3UTR GCA 90 bp TTCTCTGTGCCGGTGGCTGGAGCTTGCGGTGCGTGCTCAGCCAGGAGGCCCCAGGGGAAGAGTTCTCTGTaGCGGTGGCTGGAGCTTGCG +
Preference number: 4 (lower is better)
Translates to: FSVPVAGACGACSARRPQGKSSL*RWLELA
Trigger: CGCAAGCTCCAGCCACCGGCACAGAGAACTCTTCCC...CTGGGGCCTCCTGGCTGAGCACGCACCGCAAGCTCCAGCCACCGGCACAGAGAA
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000277570.10
ENST00000379200.1
ENST00000622831.4
CDS-3UTR CCA 90 bp TTTAGGGAAGAGTTCTCTGTGCCGGTGGCTGGAGCTTGCGGTGCGTGCTCAGCCCAGAGCGCAGGAGTCTaGGGTGCTCCACCGGCGGGG +
Preference number: 4 (lower is better)
Translates to: FREEFSVPVAGACGACSAQSAGV*GAPPAG
Trigger: CCCCGCCGGTGGAGCACCCCAGACTCCTGCGCTCTG...GGCTGAGCACGCACCGCAAGCTCCAGCCACCGGCACAGAGAACTCTTCCCTAAA
66% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000277570.10
ENST00000622831.4
CDS-3UTR CCA 90 bp TTTAGGGAAGAGTTCTCTGTGCCGGTGGCTGGAGCTTGCGGTGCGTGCTCAGCCCGGCGTGGCCGTGGATaGTGGCCAACACCTGCGCCC +
Preference number: 4 (lower is better)
Translates to: FREEFSVPVAGACGACSARRGRG*WPTPAP
Trigger: GGGCGCAGGTGTTGGCCACCATCCACGGCCACGCCG...GGCTGAGCACGCACCGCAAGCTCCAGCCACCGGCACAGAGAACTCTTCCCTAAA
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000277570.10
ENST00000379200.1
CDS-3UTR CCA 90 bp TTAGGGAAGAGTTCTCTGTGCCGGTGGCTGGAGCTTGCGGTGCGTGCTCAGCCAGCGCCGGCGTGGCCGTaGATGGTGGCCAACACCTGC +
Preference number: 4 (lower is better)
Translates to: LGKSSLCRWLELAVRAQPAPAWP*MVANTC
Trigger: GCAGGTGTTGGCCACCATCCACGGCCACGCCGGCGC...TGGCTGAGCACGCACCGCAAGCTCCAGCCACCGGCACAGAGAACTCTTCCCTAA
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000277570.10
ENST00000379200.1
CDS-3UTR GCA 90 bp CAGATTCCTTTAGGGAAGAGTTCTCTGTGCCGGTGGCTGGAGCTTGCGGTGCGTTCCGCAGGGCCTCCCTaGGCGCCTCCTCCGAGGAGC +
Preference number: 4 (lower is better)
Translates to: QIPLGKSSLCRWLELAVRSAGPP*APPPRS
Trigger: GCTCCTCGGAGGAGGCGCGCAGGGAGGCCCTGCGGA...ACGCACCGCAAGCTCCAGCCACCGGCACAGAGAACTCTTCCCTAAAGGAATCTG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000277570.10
ENST00000379200.1
ENST00000622831.4
CDS-3UTR CCA 90 bp TTAGGGAAGAGTTCTCTGTGCCGGTGGCTGGAGCTTGCGGTGCGTGCTCAGCCACACTTGGGAAGCCGTTaGCCAGCGCCGGGTGGCTGG +
Preference number: 4 (lower is better)
Translates to: LGKSSLCRWLELAVRAQPHLGSR*PAPGGW
Trigger: CCAGCCACCCGGCGCTGGCCAACGGCTTCCCAAGTG...TGGCTGAGCACGCACCGCAAGCTCCAGCCACCGGCACAGAGAACTCTTCCCTAA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000622831.4
CDS-3UTR TCA 90 bp TTAGACCAAACAGCTCCTGGGTGCAGCGACTCTTTCACCCTCTCTTCAGGGTGGTGCGCTCCTGCACGCTaGCGGCCGCCCTGGACAGGG +
Preference number: 4 (lower is better)
Translates to: LDQTAPGCSDSFTLSSGWCAPAR*RPPWTG
Trigger: CCCTGTCCAGGGCGGCCGTCAGCGTGCAGGAGCGCA...CCACCCTGAAGAGAGGGTGAAAGAGTCGCTGCACCCAGGAGCTGTTTGGTCTAA
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000277570.10
ENST00000379200.1
CDS-3UTR GCA 90 bp TTTAGGGAAGAGTTCTCTGTGCCGGTGGCTGGAGCTTGCGGTGCGTGCTCAGCCATGGTGGCCAACACCTaGGCCCTGCGCTCCTGCACG +
Preference number: 4 (lower is better)
Translates to: FREEFSVPVAGACGACSAMVANT*ALRSCT
Trigger: CGTGCAGGAGCGCAGGGCGCAGGTGTTGGCCACCAT...GGCTGAGCACGCACCGCAAGCTCCAGCCACCGGCACAGAGAACTCTTCCCTAAA
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000277570.10
ENST00000379200.1
CDS-3UTR GCA 90 bp AGGGAGACAAGCCCTCGGCCAGATTCCTTTAGGGAAGAGTTCTCTGTGCCGGTGCGGAGCCTGACCCCCTaGCCGGAGACTCTCAGCGGG +
Preference number: 4 (lower is better)
Translates to: RETSPRPDSFREEFSVPVRSLTP*PETLSG
Trigger: CCCGCTGAGAGTCTCCGGGCAGGGGGTCAGGCTCCG...CACCGGCACAGAGAACTCTTCCCTAAAGGAATCTGGCCGAGGGCTTGTCTCCCT
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000277570.10
ENST00000379200.1
CDS-3UTR GCA 90 bp TTCTCTGTGCCGGTGGCTGGAGCTTGCGGTGCGTGCTCAGCCAGGAGGCCCCAGCAAACAGCTCCTGGGTaGAGCGACTCTTTCACCCTC +
Preference number: 4 (lower is better)
Translates to: FSVPVAGACGACSARRPQQTAPG*SDSFTL
Trigger: GAGGGTGAAAGAGTCGCTGCACCCAGGAGCTGTTTG...CTGGGGCCTCCTGGCTGAGCACGCACCGCAAGCTCCAGCCACCGGCACAGAGAA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000277570.10
ENST00000379200.1
ENST00000622831.4
CDS-3UTR CCA 90 bp GGGAGACAAGCCCTCGGCCAGATTCCTTTAGGGAAGAGTTCTCTGTGCCGGTGGGCTAGGCAGGGGTGGTaGCGCAAGAAGGGTCTCGGG +
Preference number: 4 (lower is better)
Translates to: GRQALGQIPLGKSSLCRWARQGW*RKKGLG
Trigger: CCCGAGACCCTTCTTGCGCCACCACCCCTGCCTAGC...CCACCGGCACAGAGAACTCTTCCCTAAAGGAATCTGGCCGAGGGCTTGTCTCCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000277570.10
ENST00000622831.4
CDS-3UTR CCA 90 bp TTAGACCAAACAGCTCCTGGGTGCAGCGACTCTTTCACCCTCTCTTCAGGGTGGGGGAAGGCGCCGGCGTaGCCGTGGATGGTGGCCAAC +
Preference number: 4 (lower is better)
Translates to: LDQTAPGCSDSFTLSSGWGKAPA*PWMVAN
Trigger: GTTGGCCACCATCCACGGCCACGCCGGCGCCTTCCC...CCACCCTGAAGAGAGGGTGAAAGAGTCGCTGCACCCAGGAGCTGTTTGGTCTAA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000277570.10
ENST00000379200.1
CDS-3UTR TCA 90 bp CCCGCTGTCACTTCCATTTTAGACCAAACAGCTCCTGGGTGCAGCGACTCTTTCGGCTGCCGCCTCTGCTaGAGGCTCGGAGCCTGCAGC +
Preference number: 4 (lower is better)
Translates to: PAVTSILDQTAPGCSDSFGCRLC*RLGACS
Trigger: GCTGCAGGCTCCGAGCCTTCAGCAGAGGCGGCAGCC...GAAAGAGTCGCTGCACCCAGGAGCTGTTTGGTCTAAAATGGAAGTGACAGCGGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000277570.10
ENST00000622831.4
CDS-3UTR TCA 90 bp TCCCGCTGTCACTTCCATTTTAGACCAAACAGCTCCTGGGTGCAGCGACTCTTTCCGCGAACTGCACGGTaGTGCCCTGGGGCCGGGGCA +
Preference number: 4 (lower is better)
Translates to: SRCHFHFRPNSSWVQRLFPRTAR*CPGAGA
Trigger: TGCCCCGGCCCCAGGGCATCACCGTGCAGTTCGCGG...AAAGAGTCGCTGCACCCAGGAGCTGTTTGGTCTAAAATGGAAGTGACAGCGGGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENST00000277570.10
ENST00000379200.1
ENST00000622831.4
CDS-3UTR GCA 90 bp ATTCCTTTAGGGAAGAGTTCTCTGTGCCGGTGGCTGGAGCTTGCGGTGCGTGCTAGGTGCAGGCCCTGCTaGCTGGGTCCCCTCTGGAAG +
Preference number: 4 (lower is better)
Translates to: IPLGKSSLCRWLELAVRARCRPC*LGPLWK
Trigger: CTTCCAGAGGGGACCCAGGCAGCAGGGCCTGCACCT...AGCACGCACCGCAAGCTCCAGCCACCGGCACAGAGAACTCTTCCCTAAAGGAAT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000277570.10
ENST00000622831.4
CDS-3UTR GCA 90 bp GCTGTCACTTCCATTTTAGACCAAACAGCTCCTGGGTGCAGCGACTCTTTCACCGCTGGGGAAGCGGGGTaGCTTGGGCTGCGCCGGGTG +
Preference number: 4 (lower is better)
Translates to: AVTSILDQTAPGCSDSFTAGEAG*LGLRRV
Trigger: CACCCGGCGCAGCCCAAGGCACCCCGCTTCCCCAGC...GGTGAAAGAGTCGCTGCACCCAGGAGCTGTTTGGTCTAAAATGGAAGTGACAGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000277570.10
ENST00000379200.1
CDS-3UTR CCA 90 bp CGCTGTCACTTCCATTTTAGACCAAACAGCTCCTGGGTGCAGCGACTCTTTCACGGAAGCGGGGTGCCTTaGGCTGCGCCGGGTGGCTGG +
Preference number: 4 (lower is better)
Translates to: RCHFHFRPNSSWVQRLFHGSGVP*AAPGGW
Trigger: CCAGCCACCCGGCGCAGCCCAAGGCACCCCGCTTCC...GTGAAAGAGTCGCTGCACCCAGGAGCTGTTTGGTCTAAAATGGAAGTGACAGCG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000277570.10
ENST00000379200.1
CDS-3UTR CCA 90 bp CAGATTCCTTTAGGGAAGAGTTCTCTGTGCCGGTGGCTGGAGCTTGCGGTGCGTCTCTGTGCCGGTGGCTaGAGCTTGCGGTGCGTGCTC +
Preference number: 4 (lower is better)
Translates to: QIPLGKSSLCRWLELAVRLCAGG*SLRCVL
Trigger: GAGCACGCACCGCAAGCTCCAGCCACCGGCACAGAG...ACGCACCGCAAGCTCCAGCCACCGGCACAGAGAACTCTTCCCTAAAGGAATCTG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000277570.10
ENST00000379200.1
ENST00000622831.4
CDS-3UTR CCA 90 bp TTAGGGAAGAGTTCTCTGTGCCGGTGGCTGGAGCTTGCGGTGCGTGCTCAGCCAAGTTCTCTGTGCCGGTaGCTGGAGCTTGCGGTGCGT +
Preference number: 4 (lower is better)
Translates to: LGKSSLCRWLELAVRAQPSSLCR*LELAVR
Trigger: ACGCACCGCAAGCTCCAGCCACCGGCACAGAGAACT...TGGCTGAGCACGCACCGCAAGCTCCAGCCACCGGCACAGAGAACTCTTCCCTAA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000277570.10
ENST00000379200.1
ENST00000622831.4
CDS-3UTR TCA 90 bp ATTCCTTTAGGGAAGAGTTCTCTGTGCCGGTGGCTGGAGCTTGCGGTGCGTGCTCTCACGAACTCTCCCTaGGCAGCCCCAGCTTCCGCA +
Preference number: 4 (lower is better)
Translates to: IPLGKSSLCRWLELAVRALTNSP*AAPASA
Trigger: TGCGGAAGCTGGGGCTGCTCAGGGAGAGTTCGTGAG...AGCACGCACCGCAAGCTCCAGCCACCGGCACAGAGAACTCTTCCCTAAAGGAAT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000277570.10
ENST00000379200.1
ENST00000622831.4
CDS-3UTR GCA 90 bp TTTAGGGAAGAGTTCTCTGTGCCGGTGGCTGGAGCTTGCGGTGCGTGCTCAGCCTTCTGGAGCGAGAGCTaGTGCTTCGACTCTCCAGGC +
Preference number: 4 (lower is better)
Translates to: FREEFSVPVAGACGACSAFWSES*CFDSPG
Trigger: GCCTGGAGAGTCGAAGCAGCAGCTCTCGCTCCAGAA...GGCTGAGCACGCACCGCAAGCTCCAGCCACCGGCACAGAGAACTCTTCCCTAAA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000277570.10
ENST00000622831.4
CDS-3UTR GCA 90 bp ACGGGAAAGAAACAGGCTCTGTTACGGCGCTGGCGGAGACATAAAAACACAAAGTGCGCCCTGCGCTCCTaGACGCTGACGGCCGCCCTG +
Preference number: 4 (lower is better)
Translates to: TGKKQALLRRWRRHKNTKCALRS*TLTAAL
Trigger: CAGGGCGGCCGTCAGCGTGCAGGAGCGCAGGGCGCA...CTTTGTGTTTTTATGTCTCCGCCAGCGCCGTAACAGAGCCTGTTTCTTTCCCGT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000277570.10
CDS-3UTR GCA 90 bp GGGAGACAAGCCCTCGGCCAGATTCCTTTAGGGAAGAGTTCTCTGTGCCGGTGGCTCTTCAGGGCCTCGTaGGCACTTGGGAAGCCGTTG +
Preference number: 4 (lower is better)
Translates to: GRQALGQIPLGKSSLCRWLFRAS*ALGKPL
Trigger: CAACGGCTTCCCAAGTGCGCACGAGGCCCTGAAGAG...CCACCGGCACAGAGAACTCTTCCCTAAAGGAATCTGGCCGAGGGCTTGTCTCCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000277570.10
ENST00000379200.1
ENST00000622831.4
CDS-3UTR GCA 90 bp ACTTCCATTTTAGACCAAACAGCTCCTGGGTGCAGCGACTCTTTCACCCTCTCTCCGCGGCCCGCGAACTaGACGGTGATGCCCTGGGGC +
Preference number: 4 (lower is better)
Translates to: TSILDQTAPGCSDSFTLSPRPAN*TVMPWG
Trigger: GCCCCAGGGCATCACCGTGCAGTTCGCGGGCCGCGG...AGAGAGGGTGAAAGAGTCGCTGCACCCAGGAGCTGTTTGGTCTAAAATGGAAGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000277570.10
ENST00000379200.1
ENST00000622831.4
CDS-3UTR GCA 90 bp AAAAGGGAGACAAGCCCTCGGCCAGATTCCTTTAGGGAAGAGTTCTCTGTGCCGGGCTGGAGCTTGCGGTaGGTGCTCAGCCAGGAGGCC +
Preference number: 4 (lower is better)
Translates to: KRETSPRPDSFREEFSVPGWSLR*VLSQEA
Trigger: GGCCTCCTGGCTGAGCACGCACCGCAAGCTCCAGCC...CGGCACAGAGAACTCTTCCCTAAAGGAATCTGGCCGAGGGCTTGTCTCCCTTTT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000277570.10
ENST00000379200.1
ENST00000622831.4
CDS-3UTR GCA 90 bp AAAAGGGAGACAAGCCCTCGGCCAGATTCCTTTAGGGAAGAGTTCTCTGTGCCGCCGGTGGCTGGAGCTTaGGGTGCGTGCTCAGCCAGG +
Preference number: 4 (lower is better)
Translates to: KRETSPRPDSFREEFSVPPVAGA*GACSAR
Trigger: CCTGGCTGAGCACGCACCGCAAGCTCCAGCCACCGG...CGGCACAGAGAACTCTTCCCTAAAGGAATCTGGCCGAGGGCTTGTCTCCCTTTT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000277570.10
ENST00000379200.1
ENST00000622831.4
CDS-3UTR CCA 90 bp AGGGAGACAAGCCCTCGGCCAGATTCCTTTAGGGAAGAGTTCTCTGTGCCGGTGGGTGCTAGGCAGGGGTaGTGGCGCAAGAAGGGTCTC +
Preference number: 4 (lower is better)
Translates to: RETSPRPDSFREEFSVPVGARQG*WRKKGL
Trigger: GAGACCCTTCTTGCGCCACCACCCCTGCCTAGCACC...CACCGGCACAGAGAACTCTTCCCTAAAGGAATCTGGCCGAGGGCTTGTCTCCCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000277570.10
ENST00000622831.4
CDS-3UTR CCA 90 bp AGTTCTCTGTGCCGGTGGCTGGAGCTTGCGGTGCGTGCTCAGCCAGGAGGCCCCGGCGAGAATCCTGAGTaGAAGGGATCTGAACTTTCA +
Preference number: 4 (lower is better)
Translates to: SSLCRWLELAVRAQPGGPGENPE*KGSELS
Trigger: TGAAAGTTCAGATCCCTTCCACTCAGGATTCTCGCC...GGGGCCTCCTGGCTGAGCACGCACCGCAAGCTCCAGCCACCGGCACAGAGAACT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000277570.10
ENST00000379200.1
ENST00000622831.4
CDS-3UTR TCA 90 bp GGGAGACAAGCCCTCGGCCAGATTCCTTTAGGGAAGAGTTCTCTGTGCCGGTGGGCTGGGGGACGTGTCTaGGTTCATGTCAGATGCGTC +
Preference number: 4 (lower is better)
Translates to: GRQALGQIPLGKSSLCRWAGGRV*VHVRCV
Trigger: GACGCATCTGACATGAACTCAGACACGTCCCCCAGC...CCACCGGCACAGAGAACTCTTCCCTAAAGGAATCTGGCCGAGGGCTTGTCTCCC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000277570.10
ENST00000622831.4
CDS-3UTR TCA 90 bp GGGGCTCCCGCTGTCACTTCCATTTTAGACCAAACAGCTCCTGGGTGCAGCGACGCTGGGGGACGTGTCTaGGTTCATGTCAGATGCGTC +
Preference number: 4 (lower is better)
Translates to: GAPAVTSILDQTAPGCSDAGGRV*VHVRCV
Trigger: GACGCATCTGACATGAACTCAGACACGTCCCCCAGC...GTCGCTGCACCCAGGAGCTGTTTGGTCTAAAATGGAAGTGACAGCGGGAGCCCC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000277570.10
ENST00000622831.4
CDS-3UTR GCA 90 bp ATTCCTTTAGGGAAGAGTTCTCTGTGCCGGTGGCTGGAGCTTGCGGTGCGTGCTCTCTTCAGGGCCTCGTaGGCACTTGGGAAGCCGTTG +
Preference number: 4 (lower is better)
Translates to: IPLGKSSLCRWLELAVRALFRAS*ALGKPL
Trigger: CAACGGCTTCCCAAGTGCGCACGAGGCCCTGAAGAG...AGCACGCACCGCAAGCTCCAGCCACCGGCACAGAGAACTCTTCCCTAAAGGAAT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000277570.10
ENST00000379200.1
ENST00000622831.4
CDS-3UTR GCA 90 bp GCTGTCACTTCCATTTTAGACCAAACAGCTCCTGGGTGCAGCGACTCTTTCACCGGAGCTTGCGGTGCGTaGTCAGCCAGGAGGCCCCAG +
Preference number: 4 (lower is better)
Translates to: AVTSILDQTAPGCSDSFTGACGA*SARRPQ
Trigger: CTGGGGCCTCCTGGCTGAGCACGCACCGCAAGCTCC...GGTGAAAGAGTCGCTGCACCCAGGAGCTGTTTGGTCTAAAATGGAAGTGACAGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000277570.10
ENST00000379200.1
ENST00000622831.4
CDS-3UTR CCA 90 bp ATTCCTTTAGGGAAGAGTTCTCTGTGCCGGTGGCTGGAGCTTGCGGTGCGTGCTCTCGGAGCCTGCAGCTaGGGGACGTGTCTGAGTTCA +
Preference number: 4 (lower is better)
Translates to: IPLGKSSLCRWLELAVRALGACS*GTCLSS
Trigger: TGAACTCAGACACGTCCCCCAGCTGCAGGCTCCGAG...AGCACGCACCGCAAGCTCCAGCCACCGGCACAGAGAACTCTTCCCTAAAGGAAT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000277570.10
ENST00000622831.4
CDS-3UTR CCA 90 bp CGCTGTCACTTCCATTTTAGACCAAACAGCTCCTGGGTGCAGCGACTCTTTCACAGAAACGGGGTGGACTaGAGCCCGCGCGGCCCTCAC +
Preference number: 4 (lower is better)
Translates to: RCHFHFRPNSSWVQRLFHRNGVD*SPRGPH
Trigger: GTGAGGGCCGCGCGGGCTCCAGTCCACCCCGTTTCT...GTGAAAGAGTCGCTGCACCCAGGAGCTGTTTGGTCTAAAATGGAAGTGACAGCG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000277570.10
ENST00000379200.1
ENST00000622831.4
CDS-3UTR TCA 90 bp TCCTCCCAACCCCCAAAAGATGGCATTTACACATCACGGAAACCTATGGGTCTAGGCTGCCGCCTCTGCTaGAGGCTCGGAGCCTGCAGC +
Preference number: 4 (lower is better)
Translates to: SSQPPKDGIYTSRKPMGLGCRLC*RLGACS
Trigger: GCTGCAGGCTCCGAGCCTTCAGCAGAGGCGGCAGCC...TAGACCCATAGGTTTCCGTGATGTGTAAATGCCATCTTTTGGGGGTTGGGAGGA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000277570.10
ENST00000622831.4
CDS-3UTR TCA 90 bp GCGAGAATCCTGAGTGGAAGGGATCTGAACTTTCATGTCATGTACTTCGAGAAGCCGCGAACTGCACGGTaGTGCCCTGGGGCCGGGGCA +
Preference number: 4 (lower is better)
Translates to: ARILSGRDLNFHVMYFEKPRTAR*CPGAGA
Trigger: TGCCCCGGCCCCAGGGCATCACCGTGCAGTTCGCGG...CTTCTCGAAGTACATGACATGAAAGTTCAGATCCCTTCCACTCAGGATTCTCGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000277570.10
ENST00000379200.1
ENST00000622831.4
CDS-3UTR TCA 90 bp TTCTTAGAAAAGGCGGCGAGAATCCTGAGTGGAAGGGATCTGAACTTTCATGTCCCGCGAACTGCACGGTaGTGCCCTGGGGCCGGGGCA +
Preference number: 4 (lower is better)
Translates to: FLEKAARILSGRDLNFHVPRTAR*CPGAGA
Trigger: TGCCCCGGCCCCAGGGCATCACCGTGCAGTTCGCGG...GACATGAAAGTTCAGATCCCTTCCACTCAGGATTCTCGCCGCCTTTTCTAAGAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENST00000277570.10
ENST00000379200.1
ENST00000622831.4
CDS-3UTR TCA 90 bp CCCGCTGTCACTTCCATTTTAGACCAAACAGCTCCTGGGTGCAGCGACTCTTTCCTCACGAACTCTCCCTaGGCAGCCCCAGCTTCCGCA +
Preference number: 4 (lower is better)
Translates to: PAVTSILDQTAPGCSDSFLTNSP*AAPASA
Trigger: TGCGGAAGCTGGGGCTGCTCAGGGAGAGTTCGTGAG...GAAAGAGTCGCTGCACCCAGGAGCTGTTTGGTCTAAAATGGAAGTGACAGCGGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000277570.10
ENST00000379200.1
ENST00000622831.4
CDS-3UTR TCA 90 bp AGTTCTCTGTGCCGGTGGCTGGAGCTTGCGGTGCGTGCTCAGCCAGGAGGCCCCCGAGAAGAGGGTAGATaGGACTCAAGAATGATAATC +
Preference number: 4 (lower is better)
Translates to: SSLCRWLELAVRAQPGGPREEGR*DSRMII
Trigger: GATTATCATTCTTGAGTCTCATCTACCCTCTTCTCG...GGGGCCTCCTGGCTGAGCACGCACCGCAAGCTCCAGCCACCGGCACAGAGAACT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000277570.10
ENST00000379200.1
ENST00000622831.4
CDS-3UTR GCA 90 bp GCTGTCACTTCCATTTTAGACCAAACAGCTCCTGGGTGCAGCGACTCTTTCACCCGGAGGGACTGGAGGTaGTCTCCTCCAGAGACGGGG +
Preference number: 4 (lower is better)
Translates to: AVTSILDQTAPGCSDSFTRRDWR*SPPETG
Trigger: CCCCGTCTCTGGAGGAGAGCACCTCCAGTCCCTCCG...GGTGAAAGAGTCGCTGCACCCAGGAGCTGTTTGGTCTAAAATGGAAGTGACAGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000277570.10
ENST00000622831.4
CDS-3UTR GCA 90 bp GGGAGACAAGCCCTCGGCCAGATTCCTTTAGGGAAGAGTTCTCTGTGCCGGTGGCAAACAGCTCCTGGGTaGAGCGACTCTTTCACCCTC +
Preference number: 4 (lower is better)
Translates to: GRQALGQIPLGKSSLCRWQTAPG*SDSFTL
Trigger: GAGGGTGAAAGAGTCGCTGCACCCAGGAGCTGTTTG...CCACCGGCACAGAGAACTCTTCCCTAAAGGAATCTGGCCGAGGGCTTGTCTCCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000277570.10
ENST00000379200.1
ENST00000622831.4
CDS-3UTR GCA 90 bp ACTTCCATTTTAGACCAAACAGCTCCTGGGTGCAGCGACTCTTTCACCCTCTCTGGCTGGAGCTTGCGGTaGGTGCTCAGCCAGGAGGCC +
Preference number: 4 (lower is better)
Translates to: TSILDQTAPGCSDSFTLSGWSLR*VLSQEA
Trigger: GGCCTCCTGGCTGAGCACGCACCGCAAGCTCCAGCC...AGAGAGGGTGAAAGAGTCGCTGCACCCAGGAGCTGTTTGGTCTAAAATGGAAGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000277570.10
ENST00000379200.1
ENST00000622831.4
CDS-3UTR GCA 90 bp CTGGTTTTTCCCTACCCTGAGATCTTGCTTGTGGAACATGACAGTCGGTGGATCCCGGTGGCTGGAGCTTaGGGTGCGTGCTCAGCCAGG +
Preference number: 4 (lower is better)
Translates to: LVFPYPEILLVEHDSRWIPVAGA*GACSAR
Trigger: CCTGGCTGAGCACGCACCGCAAGCTCCAGCCACCGG...GATCCACCGACTGTCATGTTCCACAAGCAAGATCTCAGGGTAGGGAAAAACCAG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000277570.10
CDS-3UTR CCA 90 bp ACGGGAAAGAAACAGGCTCTGTTACGGCGCTGGCGGAGACATAAAAACACAAAGCGGGCGCGAAGGAGCTaGGTGCGCTCTTCAGGGCCT +
Preference number: 4 (lower is better)
Translates to: TGKKQALLRRWRRHKNTKRARRS*VRSSGP
Trigger: AGGCCCTGAAGAGCGCACCCAGCTCCTTCGCGCCCG...CTTTGTGTTTTTATGTCTCCGCCAGCGCCGTAACAGAGCCTGTTTCTTTCCCGT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000277570.10
CDS-3UTR TCA 90 bp CAGATTCCTTTAGGGAAGAGTTCTCTGTGCCGGTGGCTGGAGCTTGCGGTGCGTGCTGCACTAAGTCGATaGCATCTTCAGGCTCGGAGG +
Preference number: 4 (lower is better)
Translates to: QIPLGKSSLCRWLELAVRAALSR*HLQARR
Trigger: CCTCCGAGCCTGAAGATGTCATCGACTTAGTGCAGC...ACGCACCGCAAGCTCCAGCCACCGGCACAGAGAACTCTTCCCTAAAGGAATCTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000277570.10
ENST00000622831.4
CDS-3UTR TCA 90 bp AGGGAGACAAGCCCTCGGCCAGATTCCTTTAGGGAAGAGTTCTCTGTGCCGGTGCATCCATCAGGATGCTaGGGTGGCTCTGTCTACCCA +
Preference number: 4 (lower is better)
Translates to: RETSPRPDSFREEFSVPVHPSGC*GGSVYP
Trigger: TGGGTAGACAGAGCCACCTCAGCATCCTGATGGATG...CACCGGCACAGAGAACTCTTCCCTAAAGGAATCTGGCCGAGGGCTTGTCTCCCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000277570.10
CDS-3UTR GCA 90 bp ATCCTGAGTGGAAGGGATCTGAACTTTCATGTCATGTACTTCGAGAAGAGGGTACGCAGGAGTCTGGGGTaGTCCACCGGCGGGGAGGGG +
Preference number: 4 (lower is better)
Translates to: ILSGRDLNFHVMYFEKRVRRSLG*STGGEG
Trigger: CCCCTCCCCGCCGGTGGAGCACCCCAGACTCCTGCG...TACCCTCTTCTCGAAGTACATGACATGAAAGTTCAGATCCCTTCCACTCAGGAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000277570.10
ENST00000622831.4
CDS-3UTR GCA 90 bp ATTCCTTTAGGGAAGAGTTCTCTGTGCCGGTGGCTGGAGCTTGCGGTGCGTGCTCTCTCGGAAATCTTCTaGGCCATAACGAGGGGCGTG +
Preference number: 4 (lower is better)
Translates to: IPLGKSSLCRWLELAVRALSEIF*AITRGV
Trigger: CACGCCCCTCGTTATGGCGCAGAAGATTTCCGAGAG...AGCACGCACCGCAAGCTCCAGCCACCGGCACAGAGAACTCTTCCCTAAAGGAAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000277570.10
ENST00000379200.1
ENST00000622831.4
CDS-3UTR GCA 90 bp GAAGCGCTGGCATCCTGTAGTGACTTAGGAGGGTGTTCAGAAGTTTCTATTTATTCCGCAGGGCCTCCCTaGGCGCCTCCTCCGAGGAGC +
Preference number: 4 (lower is better)
Translates to: EALASCSDLGGCSEVSIYSAGPP*APPPRS
Trigger: GCTCCTCGGAGGAGGCGCGCAGGGAGGCCCTGCGGA...ATAAATAGAAACTTCTGAACACCCTCCTAAGTCACTACAGGATGCCAGCGCTTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000277570.10
CDS-3UTR GCA 90 bp TCCTCCCAACCCCCAAAAGATGGCATTTACACATCACGGAAACCTATGGGTCTAGGAGCTTGCGGTGCGTaGTCAGCCAGGAGGCCCCAG +
Preference number: 4 (lower is better)
Translates to: SSQPPKDGIYTSRKPMGLGACGA*SARRPQ
Trigger: CTGGGGCCTCCTGGCTGAGCACGCACCGCAAGCTCC...TAGACCCATAGGTTTCCGTGATGTGTAAATGCCATCTTTTGGGGGTTGGGAGGA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENST00000277570.10
ENST00000379200.1
ENST00000622831.4
CDS-3UTR CCA 90 bp TTTCCCTACCCTGAGATCTTGCTTGTGGAACATGACAGTCGGTGGATCTTTAAGCAGAGCGCAGGAGTCTaGGGTGCTCCACCGGCGGGG +
Preference number: 4 (lower is better)
Translates to: FPYPEILLVEHDSRWIFKQSAGV*GAPPAG
Trigger: CCCCGCCGGTGGAGCACCCCAGACTCCTGCGCTCTG...CTTAAAGATCCACCGACTGTCATGTTCCACAAGCAAGATCTCAGGGTAGGGAAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000277570.10
CDS-3UTR CCA 90 bp CTTAGAAAAGGCGGCGAGAATCCTGAGTGGAAGGGATCTGAACTTTCATGTCATCGGCGTGGCCGTGGATaGTGGCCAACACCTGCGCCC +
Preference number: 4 (lower is better)
Translates to: LRKGGENPEWKGSELSCHRRGRG*WPTPAP
Trigger: GGGCGCAGGTGTTGGCCACCATCCACGGCCACGCCG...ATGACATGAAAGTTCAGATCCCTTCCACTCAGGATTCTCGCCGCCTTTTCTAAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000277570.10
ENST00000379200.1
CDS-3UTR CCA 90 bp CAACCCCCAAAAGATGGCATTTACACATCACGGAAACCTATGGGTCTAACAGGTGCGCCGGCGTGGCCGTaGATGGTGGCCAACACCTGC +
Preference number: 4 (lower is better)
Translates to: QPPKDGIYTSRKPMGLTGAPAWP*MVANTC
Trigger: GCAGGTGTTGGCCACCATCCACGGCCACGCCGGCGC...ACCTGTTAGACCCATAGGTTTCCGTGATGTGTAAATGCCATCTTTTGGGGGTTG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000277570.10
ENST00000379200.1
CDS-3UTR CCA 90 bp GCGAGAATCCTGAGTGGAAGGGATCTGAACTTTCATGTCATGTACTTCGAGAAGGGGAAGGCGCCGGCGTaGCCGTGGATGGTGGCCAAC +
Preference number: 4 (lower is better)
Translates to: ARILSGRDLNFHVMYFEKGKAPA*PWMVAN
Trigger: GTTGGCCACCATCCACGGCCACGCCGGCGCCTTCCC...CTTCTCGAAGTACATGACATGAAAGTTCAGATCCCTTCCACTCAGGATTCTCGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000277570.10
ENST00000379200.1
CDS-3UTR CCA 90 bp AAAGGGAGACAAGCCCTCGGCCAGATTCCTTTAGGGAAGAGTTCTCTGTGCCGGACCCTCTCTTCAGGGTaGGGAGAAACGGGGTGGACT +
Preference number: 4 (lower is better)
Translates to: KGRQALGQIPLGKSSLCRTLSSG*GETGWT
Trigger: AGTCCACCCCGTTTCTCCCCACCCTGAAGAGAGGGT...CCGGCACAGAGAACTCTTCCCTAAAGGAATCTGGCCGAGGGCTTGTCTCCCTTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000277570.10
ENST00000379200.1
ENST00000622831.4
CDS-3UTR TCA 90 bp ACGGAAACCTATGGGTCTAACAGGTTATTCTCTCTCTCTCAGTTCTTGGGAAAATGCGCTCCTGCACGCTaGCGGCCGCCCTGGACAGGG +
Preference number: 4 (lower is better)
Translates to: TETYGSNRLFSLSQFLGKCAPAR*RPPWTG
Trigger: CCCTGTCCAGGGCGGCCGTCAGCGTGCAGGAGCGCA...TTTTCCCAAGAACTGAGAGAGAGAGAATAACCTGTTAGACCCATAGGTTTCCGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000277570.10
ENST00000379200.1
CDS-3UTR TCA 90 bp AGTTCTCTGTGCCGGTGGCTGGAGCTTGCGGTGCGTGCTCAGCCAGGAGGCCCCAAGACCTTCTATTATTaGACACTGTATGGCATCTTG +
Preference number: 4 (lower is better)
Translates to: SSLCRWLELAVRAQPGGPKTFYY*TLYGIL
Trigger: CAAGATGCCATACAGTGTTCAATAATAGAAGGTCTT...GGGGCCTCCTGGCTGAGCACGCACCGCAAGCTCCAGCCACCGGCACAGAGAACT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000277570.10
CDS-3UTR GCA 90 bp GCTGTCACTTCCATTTTAGACCAAACAGCTCCTGGGTGCAGCGACTCTTTCACCGCCAGCAGCCCATTCTaGGGCAACAGCTCACTCCTC +
Preference number: 4 (lower is better)
Translates to: AVTSILDQTAPGCSDSFTASSPF*GNSSLL
Trigger: GAGGAGTGAGCTGTTGCCGCAGAATGGGCTGCTGGC...GGTGAAAGAGTCGCTGCACCCAGGAGCTGTTTGGTCTAAAATGGAAGTGACAGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000277570.10
ENST00000622831.4
CDS-3UTR GCA 90 bp CGCTGTCACTTCCATTTTAGACCAAACAGCTCCTGGGTGCAGCGACTCTTTCACTGGAGCGAGAGCTGCTaGTTCGACTCTCCAGGCTGC +
Preference number: 4 (lower is better)
Translates to: RCHFHFRPNSSWVQRLFHWSESC*FDSPGC
Trigger: GCAGCCTGGAGAGTCGAAGCAGCAGCTCTCGCTCCA...GTGAAAGAGTCGCTGCACCCAGGAGCTGTTTGGTCTAAAATGGAAGTGACAGCG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000277570.10
ENST00000622831.4
CDS-3UTR GCA 90 bp TCCTCCCAACCCCCAAAAGATGGCATTTACACATCACGGAAACCTATGGGTCTACGCGAAGGAGCTGGGTaGGCTCTTCAGGGCCTCGTG +
Preference number: 4 (lower is better)
Translates to: SSQPPKDGIYTSRKPMGLREGAG*ALQGLV
Trigger: CACGAGGCCCTGAAGAGCGCACCCAGCTCCTTCGCG...TAGACCCATAGGTTTCCGTGATGTGTAAATGCCATCTTTTGGGGGTTGGGAGGA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000277570.10
ENST00000379200.1
ENST00000622831.4
CDS-3UTR GCA 90 bp ACGGAAACCTATGGGTCTAACAGGTTATTCTCTCTCTCTCAGTTCTTGGGAAAATCCGCAGGGCCTCCCTaGGCGCCTCCTCCGAGGAGC +
Preference number: 4 (lower is better)
Translates to: TETYGSNRLFSLSQFLGKSAGPP*APPPRS
Trigger: GCTCCTCGGAGGAGGCGCGCAGGGAGGCCCTGCGGA...TTTTCCCAAGAACTGAGAGAGAGAGAATAACCTGTTAGACCCATAGGTTTCCGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000277570.10
ENST00000379200.1
ENST00000622831.4
CDS-3UTR GCA 90 bp TCCCGCTGTCACTTCCATTTTAGACCAAACAGCTCCTGGGTGCAGCGACTCTTTGGGAAGAGTTCTCTGTaGCGGTGGCTGGAGCTTGCG +
Preference number: 4 (lower is better)
Translates to: SRCHFHFRPNSSWVQRLFGKSSL*RWLELA
Trigger: CGCAAGCTCCAGCCACCGGCACAGAGAACTCTTCCC...AAAGAGTCGCTGCACCCAGGAGCTGTTTGGTCTAAAATGGAAGTGACAGCGGGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000277570.10
ENST00000379200.1
ENST00000622831.4
CDS-3UTR CCA 90 bp AAAGGGAGACAAGCCCTCGGCCAGATTCCTTTAGGGAAGAGTTCTCTGTGCCGGTCCATCGCACAGCACTaGCTCCTCAAAGTCCTCGTC +
Preference number: 4 (lower is better)
Translates to: KGRQALGQIPLGKSSLCRSIAQH*LLKVLV
Trigger: GACGAGGACTTTGAGGAGCCAGTGCTGTGCGATGGA...CCGGCACAGAGAACTCTTCCCTAAAGGAATCTGGCCGAGGGCTTGTCTCCCTTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000277570.10
ENST00000622831.4
CDS-3UTR CCA 90 bp ACTTCCATTTTAGACCAAACAGCTCCTGGGTGCAGCGACTCTTTCACCCTCTCTCAGGCTCGGAGGGACTaGAGGTGCTCTCCTCCAGAG +
Preference number: 4 (lower is better)
Translates to: TSILDQTAPGCSDSFTLSQARRD*RCSPPE
Trigger: CTCTGGAGGAGAGCACCTCCAGTCCCTCCGAGCCTG...AGAGAGGGTGAAAGAGTCGCTGCACCCAGGAGCTGTTTGGTCTAAAATGGAAGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000277570.10
ENST00000622831.4
CDS-3UTR CCA 90 bp TCACGGAAACCTATGGGTCTAACAGGTTATTCTCTCTCTCTCAGTTCTTGGGAATGGGGAGAAACGGGGTaGACTGGAGCCCGCGCGGCC +
Preference number: 4 (lower is better)
Translates to: SRKPMGLTGYSLSLSSWEWGETG*TGARAA
Trigger: GGCCGCGCGGGCTCCAGTCCACCCCGTTTCTCCCCA...TTCCCAAGAACTGAGAGAGAGAGAATAACCTGTTAGACCCATAGGTTTCCGTGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000277570.10
ENST00000379200.1
ENST00000622831.4
CDS-3UTR CCA 90 bp ATTCCTTTAGGGAAGAGTTCTCTGTGCCGGTGGCTGGAGCTTGCGGTGCGTGCTAGACCAAACAGCTCCTaGGTGCAGCGACTCTTTCAC +
Preference number: 4 (lower is better)
Translates to: IPLGKSSLCRWLELAVRARPNSS*VQRLFH
Trigger: GTGAAAGAGTCGCTGCACCCAGGAGCTGTTTGGTCT...AGCACGCACCGCAAGCTCCAGCCACCGGCACAGAGAACTCTTCCCTAAAGGAAT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000277570.10
ENST00000379200.1
ENST00000622831.4
CDS-3UTR CCA 90 bp TCCTCCCAACCCCCAAAAGATGGCATTTACACATCACGGAAACCTATGGGTCTACTCTGTGCCGGTGGCTaGAGCTTGCGGTGCGTGCTC +
Preference number: 4 (lower is better)
Translates to: SSQPPKDGIYTSRKPMGLLCAGG*SLRCVL
Trigger: GAGCACGCACCGCAAGCTCCAGCCACCGGCACAGAG...TAGACCCATAGGTTTCCGTGATGTGTAAATGCCATCTTTTGGGGGTTGGGAGGA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000277570.10
ENST00000379200.1
ENST00000622831.4
CDS-3UTR TCA 90 bp AGGGAGACAAGCCCTCGGCCAGATTCCTTTAGGGAAGAGTTCTCTGTGCCGGTGTCTCATCATCCAAAGTaGAGCTTCTGGAGCGAGAGC +
Preference number: 4 (lower is better)
Translates to: RETSPRPDSFREEFSVPVSHHPK*SFWSES
Trigger: GCTCTCGCTCCAGAAGCTTCACTTTGGATGATGAGA...CACCGGCACAGAGAACTCTTCCCTAAAGGAATCTGGCCGAGGGCTTGTCTCCCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000277570.10
ENST00000622831.4
CDS-3UTR TCA 90 bp AAAAGGGAGACAAGCCCTCGGCCAGATTCCTTTAGGGAAGAGTTCTCTGTGCCGGCTGCACTAAGTCGATaGCATCTTCAGGCTCGGAGG +
Preference number: 4 (lower is better)
Translates to: KRETSPRPDSFREEFSVPAALSR*HLQARR
Trigger: CCTCCGAGCCTGAAGATGTCATCGACTTAGTGCAGC...CGGCACAGAGAACTCTTCCCTAAAGGAATCTGGCCGAGGGCTTGTCTCCCTTTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000277570.10
ENST00000622831.4
CDS-3UTR GCA 90 bp CAACCCCCAAAAGATGGCATTTACACATCACGGAAACCTATGGGTCTAACAGGTATGGTGGCCAACACCTaGGCCCTGCGCTCCTGCACG +
Preference number: 4 (lower is better)
Translates to: QPPKDGIYTSRKPMGLTGMVANT*ALRSCT
Trigger: CGTGCAGGAGCGCAGGGCGCAGGTGTTGGCCACCAT...ACCTGTTAGACCCATAGGTTTCCGTGATGTGTAAATGCCATCTTTTGGGGGTTG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000277570.10
ENST00000379200.1
CDS-3UTR GCA 90 bp CTTAGAAAAGGCGGCGAGAATCCTGAGTGGAAGGGATCTGAACTTTCATGTCATCGCGAAGGAGCTGGGTaGGCTCTTCAGGGCCTCGTG +
Preference number: 4 (lower is better)
Translates to: LRKGGENPEWKGSELSCHREGAG*ALQGLV
Trigger: CACGAGGCCCTGAAGAGCGCACCCAGCTCCTTCGCG...ATGACATGAAAGTTCAGATCCCTTCCACTCAGGATTCTCGCCGCCTTTTCTAAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000277570.10
ENST00000379200.1
ENST00000622831.4
CDS-3UTR GCA 90 bp CTGAGTGGAAGGGATCTGAACTTTCATGTCATGTACTTCGAGAAGAGGGTAGATCCGGTGGCTGGAGCTTaGGGTGCGTGCTCAGCCAGG +
Preference number: 4 (lower is better)
Translates to: LSGRDLNFHVMYFEKRVDPVAGA*GACSAR
Trigger: CCTGGCTGAGCACGCACCGCAAGCTCCAGCCACCGG...ATCTACCCTCTTCTCGAAGTACATGACATGAAAGTTCAGATCCCTTCCACTCAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000277570.10
ENST00000379200.1
ENST00000622831.4
CDS-3UTR CCA 90 bp TCACGGAAACCTATGGGTCTAACAGGTTATTCTCTCTCTCTCAGTTCTTGGGAAGGCCTCGTGCGCACTTaGGAAGCCGTTGGCCAGCGC +
Preference number: 4 (lower is better)
Translates to: SRKPMGLTGYSLSLSSWEGLVRT*EAVGQR
Trigger: GCGCTGGCCAACGGCTTCCCAAGTGCGCACGAGGCC...TTCCCAAGAACTGAGAGAGAGAGAATAACCTGTTAGACCCATAGGTTTCCGTGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000277570.10
ENST00000379200.1
ENST00000622831.4
CDS-3UTR CCA 90 bp TCACGGAAACCTATGGGTCTAACAGGTTATTCTCTCTCTCTCAGTTCTTGGGAAAGAAACGGGGTGGACTaGAGCCCGCGCGGCCCTCAC +
Preference number: 4 (lower is better)
Translates to: SRKPMGLTGYSLSLSSWERNGVD*SPRGPH
Trigger: GTGAGGGCCGCGCGGGCTCCAGTCCACCCCGTTTCT...TTCCCAAGAACTGAGAGAGAGAGAATAACCTGTTAGACCCATAGGTTTCCGTGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000277570.10
ENST00000379200.1
ENST00000622831.4
CDS-3UTR CCA 90 bp CTGAGTGGAAGGGATCTGAACTTTCATGTCATGTACTTCGAGAAGAGGGTAGATAGAAACGGGGTGGACTaGAGCCCGCGCGGCCCTCAC +
Preference number: 4 (lower is better)
Translates to: LSGRDLNFHVMYFEKRVDRNGVD*SPRGPH
Trigger: GTGAGGGCCGCGCGGGCTCCAGTCCACCCCGTTTCT...ATCTACCCTCTTCTCGAAGTACATGACATGAAAGTTCAGATCCCTTCCACTCAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000277570.10
ENST00000379200.1
ENST00000622831.4
CDS-3UTR CCA 90 bp ACGGAAACCTATGGGTCTAACAGGTTATTCTCTCTCTCTCAGTTCTTGGGAAAATGGGGAGAAACGGGGTaGACTGGAGCCCGCGCGGCC +
Preference number: 4 (lower is better)
Translates to: TETYGSNRLFSLSQFLGKWGETG*TGARAA
Trigger: GGCCGCGCGGGCTCCAGTCCACCCCGTTTCTCCCCA...TTTTCCCAAGAACTGAGAGAGAGAGAATAACCTGTTAGACCCATAGGTTTCCGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENST00000277570.10
ENST00000379200.1
ENST00000622831.4
CDS-3UTR TCA 90 bp AAAGGGAGACAAGCCCTCGGCCAGATTCCTTTAGGGAAGAGTTCTCTGTGCCGGCCTTTTCCTCATGGGTaGGGTACTTCAGGCTCTCAT +
Preference number: 4 (lower is better)
Translates to: KGRQALGQIPLGKSSLCRPFPHG*GTSGSH
Trigger: ATGAGAGCCTGAAGTACCTCACCCATGAGGAAAAGG...CCGGCACAGAGAACTCTTCCCTAAAGGAATCTGGCCGAGGGCTTGTCTCCCTTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000277570.10
ENST00000622831.4
CDS-3UTR TCA 90 bp TTAGACCAAACAGCTCCTGGGTGCAGCGACTCTTTCACCCTCTCTTCAGGGTGGCCTTTTCCTCATGGGTaGGGTACTTCAGGCTCTCAT +
Preference number: 4 (lower is better)
Translates to: LDQTAPGCSDSFTLSSGWPFPHG*GTSGSH
Trigger: ATGAGAGCCTGAAGTACCTCACCCATGAGGAAAAGG...CCACCCTGAAGAGAGGGTGAAAGAGTCGCTGCACCCAGGAGCTGTTTGGTCTAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000277570.10
ENST00000622831.4
CDS-3UTR GCA 90 bp AGATGGCATTTACACATCACGGAAACCTATGGGTCTAACAGGTTATTCTCTCTCAGCAGGTGCAGGCCCTaGTGCCTGGGTCCCCTCTGG +
Preference number: 4 (lower is better)
Translates to: RWHLHITETYGSNRLFSLSRCRP*CLGPLW
Trigger: CCAGAGGGGACCCAGGCAGCAGGGCCTGCACCTGCT...GAGAGAGAATAACCTGTTAGACCCATAGGTTTCCGTGATGTGTAAATGCCATCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000277570.10
ENST00000622831.4
CDS-3UTR GCA 90 bp GCACATTTAAGCCTGAATTTAAGTAATACTCAACGGGAAAGAAACAGGCTCTGTCGCAGGAGTCTGGGGTaGTCCACCGGCGGGGAGGGG +
Preference number: 4 (lower is better)
Translates to: AHLSLNLSNTQRERNRLCRRSLG*STGGEG
Trigger: CCCCTCCCCGCCGGTGGAGCACCCCAGACTCCTGCG...ACAGAGCCTGTTTCTTTCCCGTTGAGTATTACTTAAATTCAGGCTTAAATGTGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000277570.10
CDS-3UTR GCA 90 bp TTTAGGGAAGAGTTCTCTGTGCCGGTGGCTGGAGCTTGCGGTGCGTGCTCAGCCCACACAGGATACCTATaGATGTATGTGTTGACACGT +
Preference number: 4 (lower is better)
Translates to: FREEFSVPVAGACGACSAHTGYL*MYVLTR
Trigger: ACGTGTCAACACATACATGCATAGGTATCCTGTGTG...GGCTGAGCACGCACCGCAAGCTCCAGCCACCGGCACAGAGAACTCTTCCCTAAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000277570.10
CDS-3UTR CCA 90 bp ACGGAAACCTATGGGTCTAACAGGTTATTCTCTCTCTCTCAGTTCTTGGGAAAATGCCTGGGTCCCCTCTaGAAGGCCCTCGGCTTCCCC +
Preference number: 4 (lower is better)
Translates to: TETYGSNRLFSLSQFLGKCLGPL*KALGFP
Trigger: GGGGAAGCCGAGGGCCTTCCAGAGGGGACCCAGGCA...TTTTCCCAAGAACTGAGAGAGAGAGAATAACCTGTTAGACCCATAGGTTTCCGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000277570.10
ENST00000622831.4
CDS-3UTR CCA 90 bp ACGGAAACCTATGGGTCTAACAGGTTATTCTCTCTCTCTCAGTTCTTGGGAAAAGGCCTCGTGCGCACTTaGGAAGCCGTTGGCCAGCGC +
Preference number: 4 (lower is better)
Translates to: TETYGSNRLFSLSQFLGKGLVRT*EAVGQR
Trigger: GCGCTGGCCAACGGCTTCCCAAGTGCGCACGAGGCC...TTTTCCCAAGAACTGAGAGAGAGAGAATAACCTGTTAGACCCATAGGTTTCCGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000277570.10
ENST00000379200.1
ENST00000622831.4
CDS-3UTR CCA 90 bp CCAAAAGATGGCATTTACACATCACGGAAACCTATGGGTCTAACAGGTTATTCTTGGGGAGAAACGGGGTaGACTGGAGCCCGCGCGGCC +
Preference number: 4 (lower is better)
Translates to: PKDGIYTSRKPMGLTGYSWGETG*TGARAA
Trigger: GGCCGCGCGGGCTCCAGTCCACCCCGTTTCTCCCCA...AGAATAACCTGTTAGACCCATAGGTTTCCGTGATGTGTAAATGCCATCTTTTGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENST00000277570.10
ENST00000379200.1
ENST00000622831.4
CDS-3UTR CCA 90 bp TTAGGGAAGAGTTCTCTGTGCCGGTGGCTGGAGCTTGCGGTGCGTGCTCAGCCATGTAACCTCATTCACTaGTTTTTCCCTACCCTGAGA +
Preference number: 4 (lower is better)
Translates to: LGKSSLCRWLELAVRAQPCNLIH*FFPTLR
Trigger: TCTCAGGGTAGGGAAAAACCAGTGAATGAGGTTACA...TGGCTGAGCACGCACCGCAAGCTCCAGCCACCGGCACAGAGAACTCTTCCCTAA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000277570.10
CDS-3UTR TCA 90 bp CTGAGTGGAAGGGATCTGAACTTTCATGTCATGTACTTCGAGAAGAGGGTAGATCTCACGAACTCTCCCTaGGCAGCCCCAGCTTCCGCA +
Preference number: 4 (lower is better)
Translates to: LSGRDLNFHVMYFEKRVDLTNSP*AAPASA
Trigger: TGCGGAAGCTGGGGCTGCTCAGGGAGAGTTCGTGAG...ATCTACCCTCTTCTCGAAGTACATGACATGAAAGTTCAGATCCCTTCCACTCAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000277570.10
ENST00000379200.1
ENST00000622831.4
CDS-3UTR GCA 90 bp TTAAGCCTGAATTTAAGTAATACTCAACGGGAAAGAAACAGGCTCTGTTACGGCAGCAGGTGCAGGCCCTaGTGCCTGGGTCCCCTCTGG +
Preference number: 4 (lower is better)
Translates to: LSLNLSNTQRERNRLCYGSRCRP*CLGPLW
Trigger: CCAGAGGGGACCCAGGCAGCAGGGCCTGCACCTGCT...GCCGTAACAGAGCCTGTTTCTTTCCCGTTGAGTATTACTTAAATTCAGGCTTAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000277570.10
CDS-3UTR GCA 90 bp GTTTTTCCCTACCCTGAGATCTTGCTTGTGGAACATGACAGTCGGTGGATCTTTCTCTTCAGGGCCTCGTaGGCACTTGGGAAGCCGTTG +
Preference number: 4 (lower is better)
Translates to: VFPYPEILLVEHDSRWIFLFRAS*ALGKPL
Trigger: CAACGGCTTCCCAAGTGCGCACGAGGCCCTGAAGAG...AAAGATCCACCGACTGTCATGTTCCACAAGCAAGATCTCAGGGTAGGGAAAAAC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000277570.10
CDS-3UTR GCA 90 bp TTAAGCCTGAATTTAAGTAATACTCAACGGGAAAGAAACAGGCTCTGTTACGGCGGAGCTTGCGGTGCGTaGTCAGCCAGGAGGCCCCAG +
Preference number: 4 (lower is better)
Translates to: LSLNLSNTQRERNRLCYGGACGA*SARRPQ
Trigger: CTGGGGCCTCCTGGCTGAGCACGCACCGCAAGCTCC...GCCGTAACAGAGCCTGTTTCTTTCCCGTTGAGTATTACTTAAATTCAGGCTTAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000277570.10
CDS-3UTR GCA 90 bp ATTTACACATCACGGAAACCTATGGGTCTAACAGGTTATTCTCTCTCTCTCAGTGGCTGGAGCTTGCGGTaGGTGCTCAGCCAGGAGGCC +
Preference number: 4 (lower is better)
Translates to: IYTSRKPMGLTGYSLSLSGWSLR*VLSQEA
Trigger: GGCCTCCTGGCTGAGCACGCACCGCAAGCTCCAGCC...ACTGAGAGAGAGAGAATAACCTGTTAGACCCATAGGTTTCCGTGATGTGTAAAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000277570.10
ENST00000379200.1
ENST00000622831.4
CDS-3UTR CCA 90 bp CCAAAAGATGGCATTTACACATCACGGAAACCTATGGGTCTAACAGGTTATTCTTGCCTGGGTCCCCTCTaGAAGGCCCTCGGCTTCCCC +
Preference number: 4 (lower is better)
Translates to: PKDGIYTSRKPMGLTGYSCLGPL*KALGFP
Trigger: GGGGAAGCCGAGGGCCTTCCAGAGGGGACCCAGGCA...AGAATAACCTGTTAGACCCATAGGTTTCCGTGATGTGTAAATGCCATCTTTTGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000277570.10
ENST00000622831.4
CDS-3UTR CCA 90 bp ACGGAAACCTATGGGTCTAACAGGTTATTCTCTCTCTCTCAGTTCTTGGGAAAAGCTAGGCAGGGGTGGTaGCGCAAGAAGGGTCTCGGG +
Preference number: 4 (lower is better)
Translates to: TETYGSNRLFSLSQFLGKARQGW*RKKGLG
Trigger: CCCGAGACCCTTCTTGCGCCACCACCCCTGCCTAGC...TTTTCCCAAGAACTGAGAGAGAGAGAATAACCTGTTAGACCCATAGGTTTCCGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000277570.10
ENST00000622831.4
CDS-3UTR CCA 90 bp ATTTACACATCACGGAAACCTATGGGTCTAACAGGTTATTCTCTCTCTCTCAGTCGGGCGCGAAGGAGCTaGGTGCGCTCTTCAGGGCCT +
Preference number: 4 (lower is better)
Translates to: IYTSRKPMGLTGYSLSLSRARRS*VRSSGP
Trigger: AGGCCCTGAAGAGCGCACCCAGCTCCTTCGCGCCCG...ACTGAGAGAGAGAGAATAACCTGTTAGACCCATAGGTTTCCGTGATGTGTAAAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000277570.10
ENST00000379200.1
ENST00000622831.4
CDS-3UTR CCA 90 bp CGCTGTCACTTCCATTTTAGACCAAACAGCTCCTGGGTGCAGCGACTCTTTCACAGACCAAACAGCTCCTaGGTGCAGCGACTCTTTCAC +
Preference number: 4 (lower is better)
Translates to: RCHFHFRPNSSWVQRLFHRPNSS*VQRLFH
Trigger: GTGAAAGAGTCGCTGCACCCAGGAGCTGTTTGGTCT...GTGAAAGAGTCGCTGCACCCAGGAGCTGTTTGGTCTAAAATGGAAGTGACAGCG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000277570.10
ENST00000379200.1
ENST00000622831.4
CDS-3UTR CCA 90 bp GTTTTTCCCTACCCTGAGATCTTGCTTGTGGAACATGACAGTCGGTGGATCTTTACCCTCTCTTCAGGGTaGGGAGAAACGGGGTGGACT +
Preference number: 4 (lower is better)
Translates to: VFPYPEILLVEHDSRWIFTLSSG*GETGWT
Trigger: AGTCCACCCCGTTTCTCCCCACCCTGAAGAGAGGGT...AAAGATCCACCGACTGTCATGTTCCACAAGCAAGATCTCAGGGTAGGGAAAAAC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000277570.10
CDS-3UTR CCA 90 bp GCGAGAATCCTGAGTGGAAGGGATCTGAACTTTCATGTCATGTACTTCGAGAAGACCCTCTCTTCAGGGTaGGGAGAAACGGGGTGGACT +
Preference number: 4 (lower is better)
Translates to: ARILSGRDLNFHVMYFEKTLSSG*GETGWT
Trigger: AGTCCACCCCGTTTCTCCCCACCCTGAAGAGAGGGT...CTTCTCGAAGTACATGACATGAAAGTTCAGATCCCTTCCACTCAGGATTCTCGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000277570.10
ENST00000379200.1
ENST00000622831.4
CDS-3UTR CCA 90 bp TCACGGAAACCTATGGGTCTAACAGGTTATTCTCTCTCTCTCAGTTCTTGGGAAAGTTCTCTGTGCCGGTaGCTGGAGCTTGCGGTGCGT +
Preference number: 4 (lower is better)
Translates to: SRKPMGLTGYSLSLSSWESSLCR*LELAVR
Trigger: ACGCACCGCAAGCTCCAGCCACCGGCACAGAGAACT...TTCCCAAGAACTGAGAGAGAGAGAATAACCTGTTAGACCCATAGGTTTCCGTGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000277570.10
ENST00000379200.1
ENST00000622831.4
CDS-3UTR CCA 90 bp TTAGACCAAACAGCTCCTGGGTGCAGCGACTCTTTCACCCTCTCTTCAGGGTGGCCAACCCCCAAAAGATaGCATTTACACATCACGGAA +
Preference number: 4 (lower is better)
Translates to: LDQTAPGCSDSFTLSSGWPTPKR*HLHITE
Trigger: TTCCGTGATGTGTAAATGCCATCTTTTGGGGGTTGG...CCACCCTGAAGAGAGGGTGAAAGAGTCGCTGCACCCAGGAGCTGTTTGGTCTAA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000277570.10
ENST00000379200.1
ENST00000622831.4
CDS-3UTR GCA 90 bp GCGAGAATCCTGAGTGGAAGGGATCTGAACTTTCATGTCATGTACTTCGAGAAGGCGCCAGGTGCTGGCTaGACTAAGTCGATGACATCT +
Preference number: 4 (lower is better)
Translates to: ARILSGRDLNFHVMYFEKAPGAG*TKSMTS
Trigger: AGATGTCATCGACTTAGTGCAGCCAGCACCTGGCGC...CTTCTCGAAGTACATGACATGAAAGTTCAGATCCCTTCCACTCAGGATTCTCGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000277570.10
ENST00000622831.4
CDS-3UTR CCA 90 bp ACGGAAACCTATGGGTCTAACAGGTTATTCTCTCTCTCTCAGTTCTTGGGAAAACTCGGAGCCTGCAGCTaGGGGACGTGTCTGAGTTCA +
Preference number: 4 (lower is better)
Translates to: TETYGSNRLFSLSQFLGKLGACS*GTCLSS
Trigger: TGAACTCAGACACGTCCCCCAGCTGCAGGCTCCGAG...TTTTCCCAAGAACTGAGAGAGAGAGAATAACCTGTTAGACCCATAGGTTTCCGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000277570.10
ENST00000622831.4
CDS-3UTR CCA 90 bp AGATGGCATTTACACATCACGGAAACCTATGGGTCTAACAGGTTATTCTCTCTCAGTTCTCTGTGCCGGTaGCTGGAGCTTGCGGTGCGT +
Preference number: 4 (lower is better)
Translates to: RWHLHITETYGSNRLFSLSSLCR*LELAVR
Trigger: ACGCACCGCAAGCTCCAGCCACCGGCACAGAGAACT...GAGAGAGAATAACCTGTTAGACCCATAGGTTTCCGTGATGTGTAAATGCCATCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000277570.10
ENST00000379200.1
ENST00000622831.4
CDS-3UTR CCA 90 bp CGCTGTCACTTCCATTTTAGACCAAACAGCTCCTGGGTGCAGCGACTCTTTCACGGCGAGAATCCTGAGTaGAAGGGATCTGAACTTTCA +
Preference number: 4 (lower is better)
Translates to: RCHFHFRPNSSWVQRLFHGENPE*KGSELS
Trigger: TGAAAGTTCAGATCCCTTCCACTCAGGATTCTCGCC...GTGAAAGAGTCGCTGCACCCAGGAGCTGTTTGGTCTAAAATGGAAGTGACAGCG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000277570.10
ENST00000379200.1
ENST00000622831.4
CDS-3UTR CCA 90 bp ACGGGAAAGAAACAGGCTCTGTTACGGCGCTGGCGGAGACATAAAAACACAAAGCTTCCTTCTGTTGACTaGCTACCTCGGAACATGCAG +
Preference number: 4 (lower is better)
Translates to: TGKKQALLRRWRRHKNTKLPSVD*LPRNMQ
Trigger: CTGCATGTTCCGAGGTAGCCAGTCAACAGAAGGAAG...CTTTGTGTTTTTATGTCTCCGCCAGCGCCGTAACAGAGCCTGTTTCTTTCCCGT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000277570.10
CDS-3UTR TCA 90 bp CTGGTTTTTCCCTACCCTGAGATCTTGCTTGTGGAACATGACAGTCGGTGGATCTTTGCTTCCTTCTGTTaGCTGGCTACCTCGGAACAT +
Preference number: 4 (lower is better)
Translates to: LVFPYPEILLVEHDSRWIFASFC*LATSEH
Trigger: ATGTTCCGAGGTAGCCAGTCAACAGAAGGAAGCAAA...GATCCACCGACTGTCATGTTCCACAAGCAAGATCTCAGGGTAGGGAAAAACCAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000277570.10
CDS-3UTR GCA 90 bp TTAAGCCTGAATTTAAGTAATACTCAACGGGAAAGAAACAGGCTCTGTTACGGCTGGAGCGAGAGCTGCTaGTTCGACTCTCCAGGCTGC +
Preference number: 4 (lower is better)
Translates to: LSLNLSNTQRERNRLCYGWSESC*FDSPGC
Trigger: GCAGCCTGGAGAGTCGAAGCAGCAGCTCTCGCTCCA...GCCGTAACAGAGCCTGTTTCTTTCCCGTTGAGTATTACTTAAATTCAGGCTTAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000277570.10
CDS-3UTR GCA 90 bp CTGGCATCCTGTAGTGACTTAGGAGGGTGTTCAGAAGTTTCTATTTATATAATACGGAGGGACTGGAGGTaGTCTCCTCCAGAGACGGGG +
Preference number: 4 (lower is better)
Translates to: LASCSDLGGCSEVSIYIIRRDWR*SPPETG
Trigger: CCCCGTCTCTGGAGGAGAGCACCTCCAGTCCCTCCG...TATTATATAAATAGAAACTTCTGAACACCCTCCTAAGTCACTACAGGATGCCAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000277570.10
CDS-3UTR GCA 90 bp ATCCTGAGTGGAAGGGATCTGAACTTTCATGTCATGTACTTCGAGAAGAGGGTAGCGCCAGGTGCTGGCTaGACTAAGTCGATGACATCT +
Preference number: 4 (lower is better)
Translates to: ILSGRDLNFHVMYFEKRVAPGAG*TKSMTS
Trigger: AGATGTCATCGACTTAGTGCAGCCAGCACCTGGCGC...TACCCTCTTCTCGAAGTACATGACATGAAAGTTCAGATCCCTTCCACTCAGGAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000277570.10
ENST00000622831.4
CDS-3UTR GCA 90 bp CAACCCCCAAAAGATGGCATTTACACATCACGGAAACCTATGGGTCTAACAGGTGCATCTTGTTTCCTGTaGTCCTTCCCAGCAGGTGCA +
Preference number: 4 (lower is better)
Translates to: QPPKDGIYTSRKPMGLTGASCFL*SFPAGA
Trigger: TGCACCTGCTGGGAAGGAGCACAGGAAACAAGATGC...ACCTGTTAGACCCATAGGTTTCCGTGATGTGTAAATGCCATCTTTTGGGGGTTG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000277570.10
ENST00000622831.4
CDS-3UTR GCA 90 bp ATCCTGAGTGGAAGGGATCTGAACTTTCATGTCATGTACTTCGAGAAGAGGGTACTCTCGGAAATCTTCTaGGCCATAACGAGGGGCGTG +
Preference number: 4 (lower is better)
Translates to: ILSGRDLNFHVMYFEKRVLSEIF*AITRGV
Trigger: CACGCCCCTCGTTATGGCGCAGAAGATTTCCGAGAG...TACCCTCTTCTCGAAGTACATGACATGAAAGTTCAGATCCCTTCCACTCAGGAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000277570.10
ENST00000379200.1
ENST00000622831.4
CDS-3UTR GCA 90 bp CTGAGTGGAAGGGATCTGAACTTTCATGTCATGTACTTCGAGAAGAGGGTAGATCTCTCGGAAATCTTCTaGGCCATAACGAGGGGCGTG +
Preference number: 4 (lower is better)
Translates to: LSGRDLNFHVMYFEKRVDLSEIF*AITRGV
Trigger: CACGCCCCTCGTTATGGCGCAGAAGATTTCCGAGAG...ATCTACCCTCTTCTCGAAGTACATGACATGAAAGTTCAGATCCCTTCCACTCAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000277570.10
ENST00000379200.1
ENST00000622831.4
CDS-3UTR CCA 90 bp TTCTTAGAAAAGGCGGCGAGAATCCTGAGTGGAAGGGATCTGAACTTTCATGTCGCGTCTGATTTCCGGTaGGTTACAGGCATCTCCACA +
Preference number: 4 (lower is better)
Translates to: FLEKAARILSGRDLNFHVASDFR*VTGIST
Trigger: TGTGGAGATGCCTGTAACCCACCGGAAATCAGACGC...GACATGAAAGTTCAGATCCCTTCCACTCAGGATTCTCGCCGCCTTTTCTAAGAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000277570.10
ENST00000622831.4
CDS-3UTR CCA 90 bp TCCCAACCCCCAAAAGATGGCATTTACACATCACGGAAACCTATGGGTCTAACAAGACCAAACAGCTCCTaGGTGCAGCGACTCTTTCAC +
Preference number: 4 (lower is better)
Translates to: SQPPKDGIYTSRKPMGLTRPNSS*VQRLFH
Trigger: GTGAAAGAGTCGCTGCACCCAGGAGCTGTTTGGTCT...TGTTAGACCCATAGGTTTCCGTGATGTGTAAATGCCATCTTTTGGGGGTTGGGA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000277570.10
ENST00000379200.1
ENST00000622831.4
CDS-3UTR GCA 90 bp AGATGGCATTTACACATCACGGAAACCTATGGGTCTAACAGGTTATTCTCTCTCCAAACAGCTCCTGGGTaGAGCGACTCTTTCACCCTC +
Preference number: 4 (lower is better)
Translates to: RWHLHITETYGSNRLFSLQTAPG*SDSFTL
Trigger: GAGGGTGAAAGAGTCGCTGCACCCAGGAGCTGTTTG...GAGAGAGAATAACCTGTTAGACCCATAGGTTTCCGTGATGTGTAAATGCCATCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000277570.10
ENST00000379200.1
ENST00000622831.4
CDS-3UTR TCA 90 bp ACGGAAACCTATGGGTCTAACAGGTTATTCTCTCTCTCTCAGTTCTTGGGAAAACATGTCAGATGCGTCTaGTTTCCGGTGGGTTACAGG +
Preference number: 4 (lower is better)
Translates to: TETYGSNRLFSLSQFLGKHVRCV*FPVGYR
Trigger: CCTGTAACCCACCGGAAATCAGACGCATCTGACATG...TTTTCCCAAGAACTGAGAGAGAGAGAATAACCTGTTAGACCCATAGGTTTCCGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000277570.10
ENST00000622831.4
CDS-3UTR GCA 90 bp CTGGCATCCTGTAGTGACTTAGGAGGGTGTTCAGAAGTTTCTATTTATATAATAGGGAAGAGTTCTCTGTaGCGGTGGCTGGAGCTTGCG +
Preference number: 4 (lower is better)
Translates to: LASCSDLGGCSEVSIYIIGKSSL*RWLELA
Trigger: CGCAAGCTCCAGCCACCGGCACAGAGAACTCTTCCC...TATTATATAAATAGAAACTTCTGAACACCCTCCTAAGTCACTACAGGATGCCAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000277570.10
CDS-3UTR GCA 90 bp CCAAAAGATGGCATTTACACATCACGGAAACCTATGGGTCTAACAGGTTATTCTACACAAAGGTGTCACTaGTCAGGGCAGCCCTTCCTG +
Preference number: 4 (lower is better)
Translates to: PKDGIYTSRKPMGLTGYSTQRCH*SGQPFL
Trigger: CAGGAAGGGCTGCCCTGAGCAGTGACACCTTTGTGT...AGAATAACCTGTTAGACCCATAGGTTTCCGTGATGTGTAAATGCCATCTTTTGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000277570.10
CDS-3UTR CCA 90 bp TTCTTAGAAAAGGCGGCGAGAATCCTGAGTGGAAGGGATCTGAACTTTCATGTCACATCCTTTTCCTCATaGGTGAGGTACTTCAGGCTC +
Preference number: 4 (lower is better)
Translates to: FLEKAARILSGRDLNFHVTSFSS*VRYFRL
Trigger: GAGCCTGAAGTACCTCACCCATGAGGAAAAGGATGT...GACATGAAAGTTCAGATCCCTTCCACTCAGGATTCTCGCCGCCTTTTCTAAGAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000277570.10
ENST00000622831.4
CDS-3UTR GCA 90 bp ATTTACACATCACGGAAACCTATGGGTCTAACAGGTTATTCTCTCTCTCTCAGTGCATCTTGTTTCCTGTaGTCCTTCCCAGCAGGTGCA +
Preference number: 4 (lower is better)
Translates to: IYTSRKPMGLTGYSLSLSASCFL*SFPAGA
Trigger: TGCACCTGCTGGGAAGGAGCACAGGAAACAAGATGC...ACTGAGAGAGAGAGAATAACCTGTTAGACCCATAGGTTTCCGTGATGTGTAAAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000277570.10
ENST00000622831.4
CDS-3UTR CCA 90 bp ATTTACACATCACGGAAACCTATGGGTCTAACAGGTTATTCTCTCTCTCTCAGTGCGTCTGATTTCCGGTaGGTTACAGGCATCTCCACA +
Preference number: 4 (lower is better)
Translates to: IYTSRKPMGLTGYSLSLSASDFR*VTGIST
Trigger: TGTGGAGATGCCTGTAACCCACCGGAAATCAGACGC...ACTGAGAGAGAGAGAATAACCTGTTAGACCCATAGGTTTCCGTGATGTGTAAAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000277570.10
ENST00000622831.4
CDS-3UTR CCA 90 bp GCACATTTAAGCCTGAATTTAAGTAATACTCAACGGGAAAGAAACAGGCTCTGTTCCATCGCACAGCACTaGCTCCTCAAAGTCCTCGTC +
Preference number: 4 (lower is better)
Translates to: AHLSLNLSNTQRERNRLCSIAQH*LLKVLV
Trigger: GACGAGGACTTTGAGGAGCCAGTGCTGTGCGATGGA...ACAGAGCCTGTTTCTTTCCCGTTGAGTATTACTTAAATTCAGGCTTAAATGTGC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000277570.10
CDS-3UTR CCA 90 bp GCGAGAATCCTGAGTGGAAGGGATCTGAACTTTCATGTCATGTACTTCGAGAAGCCAACCCCCAAAAGATaGCATTTACACATCACGGAA +
Preference number: 4 (lower is better)
Translates to: ARILSGRDLNFHVMYFEKPTPKR*HLHITE
Trigger: TTCCGTGATGTGTAAATGCCATCTTTTGGGGGTTGG...CTTCTCGAAGTACATGACATGAAAGTTCAGATCCCTTCCACTCAGGATTCTCGC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000277570.10
ENST00000379200.1
ENST00000622831.4
CDS-3UTR TCA 90 bp ATTTACACATCACGGAAACCTATGGGTCTAACAGGTTATTCTCTCTCTCTCAGTTCTCATCATCCAAAGTaGAGCTTCTGGAGCGAGAGC +
Preference number: 4 (lower is better)
Translates to: IYTSRKPMGLTGYSLSLSSHHPK*SFWSES
Trigger: GCTCTCGCTCCAGAAGCTTCACTTTGGATGATGAGA...ACTGAGAGAGAGAGAATAACCTGTTAGACCCATAGGTTTCCGTGATGTGTAAAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000277570.10
ENST00000622831.4
CDS-3UTR TCA 90 bp CTTAGAAAAGGCGGCGAGAATCCTGAGTGGAAGGGATCTGAACTTTCATGTCATCGAGAAGAGGGTAGATaGGACTCAAGAATGATAATC +
Preference number: 4 (lower is better)
Translates to: LRKGGENPEWKGSELSCHREEGR*DSRMII
Trigger: GATTATCATTCTTGAGTCTCATCTACCCTCTTCTCG...ATGACATGAAAGTTCAGATCCCTTCCACTCAGGATTCTCGCCGCCTTTTCTAAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000277570.10
ENST00000379200.1
ENST00000622831.4
CDS-3UTR CCA 90 bp ACGGAAACCTATGGGTCTAACAGGTTATTCTCTCTCTCTCAGTTCTTGGGAAAAGGCGAGAATCCTGAGTaGAAGGGATCTGAACTTTCA +
Preference number: 4 (lower is better)
Translates to: TETYGSNRLFSLSQFLGKGENPE*KGSELS
Trigger: TGAAAGTTCAGATCCCTTCCACTCAGGATTCTCGCC...TTTTCCCAAGAACTGAGAGAGAGAGAATAACCTGTTAGACCCATAGGTTTCCGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000277570.10
ENST00000379200.1
ENST00000622831.4
3UTR CAA 72 bp CTCATTCACTGGTTTTTCCCTACCCTGAGATCTTGCTaGTGGAACATGACAGTCGGTGGATCTTTAAGAATC +
Preference number: 4 (lower is better)
Translates to: LIHWFFPTLRSC*WNMTVGGSLRI
Trigger: GATTCTTAAAGATCCACCGACTGTCATGTTCCACAAGCAAGATCTCAGGGTAGGGAAAAACCAGTGAATGAG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000277570.10
CDS-3UTR CCA 90 bp TTAAGCCTGAATTTAAGTAATACTCAACGGGAAAGAAACAGGCTCTGTTACGGCATCAGGATGCTGAGGTaGCTCTGTCTACCCAAGAAT +
Preference number: 4 (lower is better)
Translates to: LSLNLSNTQRERNRLCYGIRMLR*LCLPKN
Trigger: ATTCTTGGGTAGACAGAGCCACCTCAGCATCCTGAT...GCCGTAACAGAGCCTGTTTCTTTCCCGTTGAGTATTACTTAAATTCAGGCTTAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000277570.10
CDS-3UTR CCA 90 bp CTTGGAAGCAGGGAATATTACTTTAACTGGGAACAGAGGAACATTTTGTTGAGGCTGAGATCTTGCTTGTaGAACATGACAGTCGGTGGA +
Preference number: 4 (lower is better)
Translates to: LGSREYYFNWEQRNILLRLRSCL*NMTVGG
Trigger: TCCACCGACTGTCATGTTCCACAAGCAAGATCTCAG...CCTCAACAAAATGTTCCTCTGTTCCCAGTTAAAGTAATATTCCCTGCTTCCAAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000277570.10
CDS-3UTR CCA 90 bp ACGGGAAAGAAACAGGCTCTGTTACGGCGCTGGCGGAGACATAAAAACACAAAGAACTTACAAGGCAAATaGGATACTATGAAAAATGCC +
Preference number: 4 (lower is better)
Translates to: TGKKQALLRRWRRHKNTKNLQGK*DTMKNA
Trigger: GGCATTTTTCATAGTATCCCATTTGCCTTGTAAGTT...CTTTGTGTTTTTATGTCTCCGCCAGCGCCGTAACAGAGCCTGTTTCTTTCCCGT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENST00000277570.10
CDS-3UTR TCA 90 bp CACAGGATACCTATGCATGTATGTGTTGACACGTACGTATCTAAAAACATACACGGTTTTTCCCTACCCTaGGATCTTGCTTGTGGAACA +
Preference number: 4 (lower is better)
Translates to: HRIPMHVCVDTYVSKNIHGFSLP*DLACGT
Trigger: TGTTCCACAAGCAAGATCTCAGGGTAGGGAAAAACC...GTGTATGTTTTTAGATACGTACGTGTCAACACATACATGCATAGGTATCCTGTG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENST00000277570.10
CDS-3UTR GCA 90 bp CTGAGTGGAAGGGATCTGAACTTTCATGTCATGTACTTCGAGAAGAGGGTAGATGAGTCTGATGAGACTTaGTTTCTCAAAATTACCACC +
Preference number: 4 (lower is better)
Translates to: LSGRDLNFHVMYFEKRVDESDET*FLKITT
Trigger: GGTGGTAATTTTGAGAAAGCAAGTCTCATCAGACTC...ATCTACCCTCTTCTCGAAGTACATGACATGAAAGTTCAGATCCCTTCCACTCAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000277570.10
CDS-3UTR CCA 90 bp AGCACTTTTGGTTCACCAAAATATCATGGAGACGTGTCCTTAAGACACTTCCATCCAACCCCCAAAAGATaGCATTTACACATCACGGAA +
Preference number: 4 (lower is better)
Translates to: STFGSPKYHGDVSLRHFHPTPKR*HLHITE
Trigger: TTCCGTGATGTGTAAATGCCATCTTTTGGGGGTTGG...ATGGAAGTGTCTTAAGGACACGTCTCCATGATATTTTGGTGAACCAAAAGTGCT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENST00000277570.10
CDS-3UTR CCA 90 bp TTCTTAGAAAAGGCGGCGAGAATCCTGAGTGGAAGGGATCTGAACTTTCATGTCTTCACCAAAATATCATaGAGACGTGTCCTTAAGACA +
Preference number: 4 (lower is better)
Translates to: FLEKAARILSGRDLNFHVFTKIS*RRVLKT
Trigger: TGTCTTAAGGACACGTCTCCATGATATTTTGGTGAA...GACATGAAAGTTCAGATCCCTTCCACTCAGGATTCTCGCCGCCTTTTCTAAGAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000277570.10
CDS-3UTR CCA 90 bp ACACACAGGATACCTATGCATGTATGTGTTGACACGTACGTATCTAAAAACATAGCTCTGTTACGGCGCTaGCGGAGACATAAAAACACA +
Preference number: 4 (lower is better)
Translates to: THRIPMHVCVDTYVSKNIALLRR*RRHKNT
Trigger: TGTGTTTTTATGTCTCCGCCAGCGCCGTAACAGAGC...TATGTTTTTAGATACGTACGTGTCAACACATACATGCATAGGTATCCTGTGTGT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENST00000277570.10
CDS-3UTR TCA 90 bp ATTTACACATCACGGAAACCTATGGGTCTAACAGGTTATTCTCTCTCTCTCAGTCGAGAAGAGGGTAGATaGGACTCAAGAATGATAATC +
Preference number: 4 (lower is better)
Translates to: IYTSRKPMGLTGYSLSLSREEGR*DSRMII
Trigger: GATTATCATTCTTGAGTCTCATCTACCCTCTTCTCG...ACTGAGAGAGAGAGAATAACCTGTTAGACCCATAGGTTTCCGTGATGTGTAAAT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000277570.10
ENST00000379200.1
ENST00000622831.4
CDS-3UTR GCA 90 bp AGATGGCATTTACACATCACGGAAACCTATGGGTCTAACAGGTTATTCTCTCTCTTTAGTGAACAGTCTTaGTTACTTGGAAGCAGGGAA +
Preference number: 4 (lower is better)
Translates to: RWHLHITETYGSNRLFSLFSEQS*LLGSRE
Trigger: TTCCCTGCTTCCAAGTAAGCAAGACTGTTCACTAAA...GAGAGAGAATAACCTGTTAGACCCATAGGTTTCCGTGATGTGTAAATGCCATCT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000277570.10
CDS-3UTR GCA 90 bp CTGGCATCCTGTAGTGACTTAGGAGGGTGTTCAGAAGTTTCTATTTATATAATACCTACCCTGAGATCTTaGTTGTGGAACATGACAGTC +
Preference number: 4 (lower is better)
Translates to: LASCSDLGGCSEVSIYIIPTLRS*LWNMTV
Trigger: GACTGTCATGTTCCACAAGCAAGATCTCAGGGTAGG...TATTATATAAATAGAAACTTCTGAACACCCTCCTAAGTCACTACAGGATGCCAG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000277570.10
CDS-3UTR CCA 90 bp ATCCTGAGTGGAAGGGATCTGAACTTTCATGTCATGTACTTCGAGAAGAGGGTAGAACATGACAGTCGGTaGATCTTTAAGAATCTTTTG +
Preference number: 4 (lower is better)
Translates to: ILSGRDLNFHVMYFEKRVEHDSR*IFKNLL
Trigger: CAAAAGATTCTTAAAGATCCACCGACTGTCATGTTC...TACCCTCTTCTCGAAGTACATGACATGAAAGTTCAGATCCCTTCCACTCAGGAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000277570.10
CDS-3UTR GCA 90 bp GCACATTTAAGCCTGAATTTAAGTAATACTCAACGGGAAAGAAACAGGCTCTGTCACTGTATGGCATCTTaGCTTGTAAAGAGCAAACAC +
Preference number: 4 (lower is better)
Translates to: AHLSLNLSNTQRERNRLCHCMAS*LVKSKH
Trigger: GTGTTTGCTCTTTACAAGGCAAGATGCCATACAGTG...ACAGAGCCTGTTTCTTTCCCGTTGAGTATTACTTAAATTCAGGCTTAAATGTGC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000277570.10
CDS-3UTR CCA 90 bp CTTGGAAGCAGGGAATATTACTTTAACTGGGAACAGAGGAACATTTTGTTGAGGACAGTCTTGCTTACTTaGAAGCAGGGAATATTACTT +
Preference number: 4 (lower is better)
Translates to: LGSREYYFNWEQRNILLRTVLLT*KQGILL
Trigger: AAGTAATATTCCCTGCTTCCAAGTAAGCAAGACTGT...CCTCAACAAAATGTTCCTCTGTTCCCAGTTAAAGTAATATTCCCTGCTTCCAAG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000277570.10
CDS-3UTR GCA 90 bp CTGGCATCCTGTAGTGACTTAGGAGGGTGTTCAGAAGTTTCTATTTATATAATAACAAATAAACTAATATaGAGTCCAGTTCACCCTACT +
Preference number: 4 (lower is better)
Translates to: LASCSDLGGCSEVSIYIITNKLI*SPVHPT
Trigger: AGTAGGGTGAACTGGACTGCATATTAGTTTATTTGT...TATTATATAAATAGAAACTTCTGAACACCCTCCTAAGTCACTACAGGATGCCAG
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000277570.10
CDS GCA 90 bp CGCCGTTGGGCTGCCGGGGCCCGGGGAAGCTCTGACGGGCCCGCGTaGTGGGCAGGGCCGGGCCAGGGCGGAAGCAGAGGGACTTCCCAG +
Preference number: 5 (lower is better)
Translates to: RRWAAGARGSSDGPA*WAGPGQGGSRGTSQ
Trigger: CTGGGAAGTCCCTCTGCTTCCGCCCTGGCCCGGCCCTGCCCAGCACGCGGGCCCGTCAGAGCTTCCCCGGGCCCCGGCAGCCCAACGGCG
78% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000277570.10
ENST00000379200.1
ENST00000622831.4
CDS CCA 90 bp CGTTGGGCTGCCGGGGCCCGGGGAAGCTCTGACGGGCCCGCGTGCTaGGCAGGGCCGGGCCAGGGCGGAAGCAGAGGGACTTCCCAGCGG +
Preference number: 5 (lower is better)
Translates to: RWAAGARGSSDGPAC*AGPGQGGSRGTSQR
Trigger: CCGCTGGGAAGTCCCTCTGCTTCCGCCCTGGCCCGGCCCTGCCCAGCACGCGGGCCCGTCAGAGCTTCCCCGGGCCCCGGCAGCCCAACG
78% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000277570.10
ENST00000379200.1
ENST00000622831.4
CDS GCA 90 bp CCGGCGTGGCCGTGGATGGTGGCCAACACCTGCGCCCTGCGCTCCTaGACGCTGACGGCCGCCCTGGACAGGGTCCTGCGGGGCTCCCGG +
Preference number: 5 (lower is better)
Translates to: PAWPWMVANTCALRS*TLTAALDRVLRGSR
Trigger: CCGGGAGCCCCGCAGGACCCTGTCCAGGGCGGCCGTCAGCGTGCAGGAGCGCAGGGCGCAGGTGTTGGCCACCATCCACGGCCACGCCGG
77% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000277570.10
ENST00000379200.1
CDS GCA 90 bp GCGGCGGGGAAGGCGCCGGCGTGGCCGTGGATGGTGGCCAACACCTaGGCCCTGCGCTCCTGCACGCTGACGGCCGCCCTGGACAGGGTC +
Preference number: 5 (lower is better)
Translates to: AAGKAPAWPWMVANT*ALRSCTLTAALDRV
Trigger: GACCCTGTCCAGGGCGGCCGTCAGCGTGCAGGAGCGCAGGGCGCAGGTGTTGGCCACCATCCACGGCCACGCCGGCGCCTTCCCCGCCGC
77% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000277570.10
ENST00000379200.1
CDS CCA 90 bp GGCCAGGGCGGAAGCAGAGGGACTTCCCAGCGGGCGCGAAGGAGCTaGGTGCGCTCTTCAGGGCCTCGTGCGCACTTGGGAAGCCGTTGG +
Preference number: 5 (lower is better)
Translates to: GQGGSRGTSQRARRS*VRSSGPRAHLGSRW
Trigger: CCAACGGCTTCCCAAGTGCGCACGAGGCCCTGAAGAGCGCACCCAGCTCCTTCGCGCCCGCTGGGAAGTCCCTCTGCTTCCGCCCTGGCC
70% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000277570.10
ENST00000379200.1
ENST00000622831.4
CDS GCA 90 bp AGGGCGGAAGCAGAGGGACTTCCCAGCGGGCGCGAAGGAGCTGGGTaGGCTCTTCAGGGCCTCGTGCGCACTTGGGAAGCCGTTGGCCAG +
Preference number: 5 (lower is better)
Translates to: RAEAEGLPSGREGAG*ALQGLVRTWEAVGQ
Trigger: CTGGCCAACGGCTTCCCAAGTGCGCACGAGGCCCTGAAGAGCGCACCCAGCTCCTTCGCGCCCGCTGGGAAGTCCCTCTGCTTCCGCCCT
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000277570.10
ENST00000379200.1
ENST00000622831.4
CDS TCA 90 bp GGCCCTCGGCTTCCCCGGCGCCAGGTGCTGGCTGCACTAAGTCGATaGCATCTTCAGGCTCGGAGGGACTGGAGGTGCTCTCCTCCAGAG +
Preference number: 5 (lower is better)
Translates to: GPRLPRRQVLAALSR*HLQARRDWRCSPPE
Trigger: CTCTGGAGGAGAGCACCTCCAGTCCCTCCGAGCCTGAAGATGTCATCGACTTAGTGCAGCCAGCACCTGGCGCCGGGGAAGCCGAGGGCC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000277570.10
ENST00000474155.1
ENST00000622831.4
CDS-3UTR CAA 90 bp TTTAGGGAAGAGTTCTCTGTGCCGGTGGCTGGAGCTTGCGGTGCGTGCTCAGCCGGGCCTCGTGCGCACTaGGGAAGCCGTTGGCCAGCG +
Preference number: 5 (lower is better)
Translates to: FREEFSVPVAGACGACSAGPRAH*GSRWPA
Trigger: CGCTGGCCAACGGCTTCCCAAGTGCGCACGAGGCCC...GGCTGAGCACGCACCGCAAGCTCCAGCCACCGGCACAGAGAACTCTTCCCTAAA
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000277570.10
ENST00000379200.1
ENST00000622831.4
CDS-3UTR CAA 90 bp TTTAGGGAAGAGTTCTCTGTGCCGGTGGCTGGAGCTTGCGGTGCGTGCTCAGCCGCACTTGGGAAGCCGTaGGCCAGCGCCGGGTGGCTG +
Preference number: 5 (lower is better)
Translates to: FREEFSVPVAGACGACSAALGKP*ASAGWL
Trigger: CAGCCACCCGGCGCTGGCCAACGGCTTCCCAAGTGC...GGCTGAGCACGCACCGCAAGCTCCAGCCACCGGCACAGAGAACTCTTCCCTAAA
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000622831.4
CDS GCA 90 bp GTGGGCGAGAGGGCTTCGTTCCCCGCCATCCTCTCGGAAATCTTCTaGGCCATAACGAGGGGCGTGGGAACAGAGCGCAGGAGTCTGGGG +
Preference number: 5 (lower is better)
Translates to: VGERASFPAILSEIF*AITRGVGTERRSLG
Trigger: CCCCAGACTCCTGCGCTCTGTTCCCACGCCCCTCGTTATGGCGCAGAAGATTTCCGAGAGGATGGCGGGGAACGAAGCCCTCTCGCCCAC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000277570.10
ENST00000379200.1
ENST00000622831.4
CDS CCA 90 bp CAAACAGCTCCTGGGTGCAGCGACTCTTTCACCCTCTCTTCAGGGTaGGGAGAAACGGGGTGGACTGGAGCCCGCGCGGCCCTCACGAAC +
Preference number: 5 (lower is better)
Translates to: QTAPGCSDSFTLSSG*GETGWTGARAALTN
Trigger: GTTCGTGAGGGCCGCGCGGGCTCCAGTCCACCCCGTTTCTCCCCACCCTGAAGAGAGGGTGAAAGAGTCGCTGCACCCAGGAGCTGTTTG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000277570.10
ENST00000379200.1
ENST00000622831.4
CDS-3UTR CAA 90 bp GGGAGACAAGCCCTCGGCCAGATTCCTTTAGGGAAGAGTTCTCTGTGCCGGTGGGGGCCTCGTGCGCACTaGGGAAGCCGTTGGCCAGCG +
Preference number: 5 (lower is better)
Translates to: GRQALGQIPLGKSSLCRWGPRAH*GSRWPA
Trigger: CGCTGGCCAACGGCTTCCCAAGTGCGCACGAGGCCC...CCACCGGCACAGAGAACTCTTCCCTAAAGGAATCTGGCCGAGGGCTTGTCTCCC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000277570.10
ENST00000379200.1
ENST00000622831.4
CDS TCA 90 bp TGGAGCGAGAGCTGCTGCTTCGACTCTCCAGGCTGCCGCCTCTGCTaGAGGCTCGGAGCCTGCAGCTGGGGGACGTGTCTGAGTTCATGT +
Preference number: 5 (lower is better)
Translates to: WSESCCFDSPGCRLC*RLGACSWGTCLSSC
Trigger: ACATGAACTCAGACACGTCCCCCAGCTGCAGGCTCCGAGCCTTCAGCAGAGGCGGCAGCCTGGAGAGTCGAAGCAGCAGCTCTCGCTCCA
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENST00000277570.10
ENST00000444604.1
ENST00000474155.1
ENST00000622831.4
CDS-3UTR CAA 90 bp AAAAGGGAGACAAGCCCTCGGCCAGATTCCTTTAGGGAAGAGTTCTCTGTGCCGGCACTTGGGAAGCCGTaGGCCAGCGCCGGGCCCCGC +
Preference number: 5 (lower is better)
Translates to: KRETSPRPDSFREEFSVPALGKP*ASAGPR
Trigger: GCGGGGCCCGGCGCTGGCCAACGGCTTCCCAAGTGC...CGGCACAGAGAACTCTTCCCTAAAGGAATCTGGCCGAGGGCTTGTCTCCCTTTT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000277570.10
ENST00000379200.1
CDS-3UTR CAA 90 bp CAGATTCCTTTAGGGAAGAGTTCTCTGTGCCGGTGGCTGGAGCTTGCGGTGCGTGCCGGTGGCTGGAGCTaGCGGTGCGTGCTCAGCCAG +
Preference number: 5 (lower is better)
Translates to: QIPLGKSSLCRWLELAVRAGGWS*RCVLSQ
Trigger: CTGGCTGAGCACGCACCGCAAGCTCCAGCCACCGGC...ACGCACCGCAAGCTCCAGCCACCGGCACAGAGAACTCTTCCCTAAAGGAATCTG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000277570.10
ENST00000379200.1
ENST00000622831.4
CDS-3UTR CAA 90 bp TTAGACCAAACAGCTCCTGGGTGCAGCGACTCTTTCACCCTCTCTTCAGGGTGGGCCGGTGGCTGGAGCTaGCGGTGCGTGCTCAGCCAG +
Preference number: 5 (lower is better)
Translates to: LDQTAPGCSDSFTLSSGWAGGWS*RCVLSQ
Trigger: CTGGCTGAGCACGCACCGCAAGCTCCAGCCACCGGC...CCACCCTGAAGAGAGGGTGAAAGAGTCGCTGCACCCAGGAGCTGTTTGGTCTAA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000277570.10
ENST00000379200.1
ENST00000622831.4
CDS-3UTR CAA 90 bp CAGATTCCTTTAGGGAAGAGTTCTCTGTGCCGGTGGCTGGAGCTTGCGGTGCGTTTGGTGACGATGATGTaGCTGGGGAAGCGGGGTGCC +
Preference number: 5 (lower is better)
Translates to: QIPLGKSSLCRWLELAVRLVTMM*LGKRGA
Trigger: GGCACCCCGCTTCCCCAGCAACATCATCGTCACCAA...ACGCACCGCAAGCTCCAGCCACCGGCACAGAGAACTCTTCCCTAAAGGAATCTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000277570.10
ENST00000379200.1
CDS CCA 90 bp CTGGGGGACGTGTCTGAGTTCATGTCAGATGCGTCTGATTTCCGGTaGGTTACAGGCATCTCCACAGAGTCCTCAGGGCCGGCTCGATCA +
Preference number: 5 (lower is better)
Translates to: LGDVSEFMSDASDFR*VTGISTESSGPARS
Trigger: TGATCGAGCCGGCCCTGAGGACTCTGTGGAGATGCCTGTAACCCACCGGAAATCAGACGCATCTGACATGAACTCAGACACGTCCCCCAG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENST00000277570.10
ENST00000444604.1
ENST00000474155.1
ENST00000622831.4
CDS-3UTR CAA 90 bp ATCCTGAGTGGAAGGGATCTGAACTTTCATGTCATGTACTTCGAGAAGAGGGTAGCACTTGGGAAGCCGTaGGCCAGCGCCGGGCCCCGC +
Preference number: 5 (lower is better)
Translates to: ILSGRDLNFHVMYFEKRVALGKP*ASAGPR
Trigger: GCGGGGCCCGGCGCTGGCCAACGGCTTCCCAAGTGC...TACCCTCTTCTCGAAGTACATGACATGAAAGTTCAGATCCCTTCCACTCAGGAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000277570.10
ENST00000379200.1
CDS TCA 90 bp CTGCTTGGGTGGGTGGACACAGCTTTCCGAAGTGGTTGTACTGACTaGCACTTGCTTTCGGCAGGGCTGGTTGCTCTAGCGCCCAAAGTG +
Preference number: 5 (lower is better)
Translates to: LLGWVDTAFRSGCTD*HLLSAGLVALAPKV
Trigger: CACTTTGGGCGCTAGAGCAACCAGCCCTGCCGAAAGCAAGTGTCAGTCAGTACAACCACTTCGGAAAGCTGTGTCCACCCACCCAAGCAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000474155.1
CDS TCA 90 bp GTGTCTGCTTGGGTGGGTGGACACAGCTTTCCGAAGTGGTTGTACTaGCTGACACTTGCTTTCGGCAGGGCTGGTTGCTCTAGCGCCCAA +
Preference number: 5 (lower is better)
Translates to: VSAWVGGHSFPKWLY*LTLAFGRAGCSSAQ
Trigger: TTGGGCGCTAGAGCAACCAGCCCTGCCGAAAGCAAGTGTCAGTCAGTACAACCACTTCGGAAAGCTGTGTCCACCCACCCAAGCAGACAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000474155.1
CDS-3UTR CAA 90 bp TCCCAACCCCCAAAAGATGGCATTTACACATCACGGAAACCTATGGGTCTAACAGGGCCTCGTGCGCACTaGGGAAGCCGTTGGCCAGCG +
Preference number: 5 (lower is better)
Translates to: SQPPKDGIYTSRKPMGLTGPRAH*GSRWPA
Trigger: CGCTGGCCAACGGCTTCCCAAGTGCGCACGAGGCCC...TGTTAGACCCATAGGTTTCCGTGATGTGTAAATGCCATCTTTTGGGGGTTGGGA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000277570.10
ENST00000379200.1
ENST00000622831.4
CDS-3UTR CAA 90 bp GTTTTTCCCTACCCTGAGATCTTGCTTGTGGAACATGACAGTCGGTGGATCTTTGCCGGTGGCTGGAGCTaGCGGTGCGTGCTCAGCCAG +
Preference number: 5 (lower is better)
Translates to: VFPYPEILLVEHDSRWIFAGGWS*RCVLSQ
Trigger: CTGGCTGAGCACGCACCGCAAGCTCCAGCCACCGGC...AAAGATCCACCGACTGTCATGTTCCACAAGCAAGATCTCAGGGTAGGGAAAAAC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000277570.10
CDS-3UTR CAA 90 bp AAAGGGAGACAAGCCCTCGGCCAGATTCCTTTAGGGAAGAGTTCTCTGTGCCGGAGGAGTCTCAGCATCTaGTTTCCTGTGCTCCTTCCC +
Preference number: 5 (lower is better)
Translates to: KGRQALGQIPLGKSSLCRRSLSI*FPVLLP
Trigger: GGGAAGGAGCACAGGAAACAAGATGCTGAGACTCCT...CCGGCACAGAGAACTCTTCCCTAAAGGAATCTGGCCGAGGGCTTGTCTCCCTTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000277570.10
ENST00000622831.4
CDS-3UTR CAA 90 bp CTGGTTTTTCCCTACCCTGAGATCTTGCTTGTGGAACATGACAGTCGGTGGATCTTGGTGACGATGATGTaGCTGGGGAAGCGGGGTGCC +
Preference number: 5 (lower is better)
Translates to: LVFPYPEILLVEHDSRWILVTMM*LGKRGA
Trigger: GGCACCCCGCTTCCCCAGCAACATCATCGTCACCAA...GATCCACCGACTGTCATGTTCCACAAGCAAGATCTCAGGGTAGGGAAAAACCAG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000277570.10
CDS-3UTR CAA 90 bp ACGGAAACCTATGGGTCTAACAGGTTATTCTCTCTCTCTCAGTTCTTGGGAAAATCCCGGGCCGCGCCGTaGGTGACGATGATGTTGCTG +
Preference number: 5 (lower is better)
Translates to: TETYGSNRLFSLSQFLGKSRAAP*VTMMLL
Trigger: CAGCAACATCATCGTCACCAACGGCGCGGCCCGGGA...TTTTCCCAAGAACTGAGAGAGAGAGAATAACCTGTTAGACCCATAGGTTTCCGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000277570.10
ENST00000379200.1
CDS-3UTR CAA 90 bp TTAGGGAAGAGTTCTCTGTGCCGGTGGCTGGAGCTTGCGGTGCGTGCTCAGCCAAACAGTCTTGCTTACTaGGAAGCAGGGAATATTACT +
Preference number: 5 (lower is better)
Translates to: LGKSSLCRWLELAVRAQPNSLAY*EAGNIT
Trigger: AGTAATATTCCCTGCTTCCAAGTAAGCAAGACTGTT...TGGCTGAGCACGCACCGCAAGCTCCAGCCACCGGCACAGAGAACTCTTCCCTAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000277570.10
CDS GCA 90 bp GGTGAGGTACTTCAGGCTCTCATCATCCTGTTGGATATAAACCTATaGACAATCGCCGGGTCTGAAGATGTGTGTCTGCTTGGGTGGGTG +
Preference number: 5 (lower is better)
Translates to: GEVLQALIILLDINL*TIAGSEDVCLLGWV
Trigger: CACCCACCCAAGCAGACACACATCTTCAGACCCGGCGATTGTGCATAGGTTTATATCCAACAGGATGATGAGAGCCTGAAGTACCTCACC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000474155.1
CDS-3UTR CAA 90 bp CGCTGTCACTTCCATTTTAGACCAAACAGCTCCTGGGTGCAGCGACTCTTTCACCCCTACCCTGAGATCTaGCTTGTGGAACATGACAGT +
Preference number: 5 (lower is better)
Translates to: RCHFHFRPNSSWVQRLFHPYPEI*LVEHDS
Trigger: ACTGTCATGTTCCACAAGCAAGATCTCAGGGTAGGG...GTGAAAGAGTCGCTGCACCCAGGAGCTGTTTGGTCTAAAATGGAAGTGACAGCG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000277570.10
CDS-3UTR CAA 90 bp TCCCGCTGTCACTTCCATTTTAGACCAAACAGCTCCTGGGTGCAGCGACTCTTTTTTTGCTTCCTTCTGTaGACTGGCTACCTCGGAACA +
Preference number: 5 (lower is better)
Translates to: SRCHFHFRPNSSWVQRLFFCFLL*TGYLGT
Trigger: TGTTCCGAGGTAGCCAGTCAACAGAAGGAAGCAAAA...AAAGAGTCGCTGCACCCAGGAGCTGTTTGGTCTAAAATGGAAGTGACAGCGGGA
50% GC, longest homopolymer 7 nt, total homopolymer stretches 11 nt.
Matches the following 1 transcripts:
ENST00000277570.10
CDS-3UTR CAA 90 bp ACTTCCATTTTAGACCAAACAGCTCCTGGGTGCAGCGACTCTTTCACCCTCTCTACCCTGAGATCTTGCTaGTGGAACATGACAGTCGGT +
Preference number: 5 (lower is better)
Translates to: TSILDQTAPGCSDSFTLSTLRSC*WNMTVG
Trigger: ACCGACTGTCATGTTCCACAAGCAAGATCTCAGGGT...AGAGAGGGTGAAAGAGTCGCTGCACCCAGGAGCTGTTTGGTCTAAAATGGAAGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000277570.10
CDS-3UTR CAA 90 bp AGATGGCATTTACACATCACGGAAACCTATGGGTCTAACAGGTTATTCTCTCTCAGGAGTCTCAGCATCTaGTTTCCTGTGCTCCTTCCC +
Preference number: 5 (lower is better)
Translates to: RWHLHITETYGSNRLFSLRSLSI*FPVLLP
Trigger: GGGAAGGAGCACAGGAAACAAGATGCTGAGACTCCT...GAGAGAGAATAACCTGTTAGACCCATAGGTTTCCGTGATGTGTAAATGCCATCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000277570.10
ENST00000622831.4
CDS-3UTR CAA 90 bp CCAAAAGATGGCATTTACACATCACGGAAACCTATGGGTCTAACAGGTTATTCTACACTGTATGGCATCTaGCCTTGTAAAGAGCAAACA +
Preference number: 5 (lower is better)
Translates to: PKDGIYTSRKPMGLTGYSTLYGI*PCKEQT
Trigger: TGTTTGCTCTTTACAAGGCAAGATGCCATACAGTGT...AGAATAACCTGTTAGACCCATAGGTTTCCGTGATGTGTAAATGCCATCTTTTGG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000277570.10
CDS-3UTR CAA 90 bp CCAAAAGATGGCATTTACACATCACGGAAACCTATGGGTCTAACAGGTTATTCTCAAGACCTTCTATTATaGAACACTGTATGGCATCTT +
Preference number: 5 (lower is better)
Translates to: PKDGIYTSRKPMGLTGYSQDLLL*NTVWHL
Trigger: AAGATGCCATACAGTGTTCAATAATAGAAGGTCTTG...AGAATAACCTGTTAGACCCATAGGTTTCCGTGATGTGTAAATGCCATCTTTTGG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000277570.10
CDS-3UTR CAA 90 bp ACACACAGGATACCTATGCATGTATGTGTTGACACGTACGTATCTAAAAACATAGGAAGTAACAATTTCTaGTATCATCCATCAGGATGC +
Preference number: 5 (lower is better)
Translates to: THRIPMHVCVDTYVSKNIGSNNF*YHPSGC
Trigger: GCATCCTGATGGATGATACAAGAAATTGTTACTTCC...TATGTTTTTAGATACGTACGTGTCAACACATACATGCATAGGTATCCTGTGTGT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000277570.10
CDS CCA 72 bp CCCCCGCGGCGGGGAAGGCGCCGGCGTGGCCGTGGATaGTGGCCAACACCTGCGCCCTGCGCTCCTGCACGC +
Preference number: 6 (lower is better)
Translates to: PPRRGRRRRGRG*WPTPAPCAPAR
Trigger: GCGTGCAGGAGCGCAGGGCGCAGGTGTTGGCCACCATCCACGGCCACGCCGGCGCCTTCCCCGCCGCGGGGG
79% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000277570.10
ENST00000379200.1
CDS CCA 72 bp GCCGGGGCCCGGGGAAGCTCTGACGGGCCCGCGTGCTaGGCAGGGCCGGGCCAGGGCGGAAGCAGAGGGACT +
Preference number: 6 (lower is better)
Translates to: AGARGSSDGPAC*AGPGQGGSRGT
Trigger: AGTCCCTCTGCTTCCGCCCTGGCCCGGCCCTGCCCAGCACGCGGGCCCGTCAGAGCTTCCCCGGGCCCCGGC
79% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000277570.10
ENST00000379200.1
ENST00000622831.4
CDS CAA 90 bp CGGGCGCGAAGGAGCTGGGTGCGCTCTTCAGGGCCTCGTGCGCACTaGGGAAGCCGTTGGCCAGCGCCGGGCCCCGCGGAGCCTGACCCC +
Preference number: 6 (lower is better)
Translates to: RARRSWVRSSGPRAH*GSRWPAPGPAEPDP
Trigger: GGGGTCAGGCTCCGCGGGGCCCGGCGCTGGCCAACGGCTTCCCAAGTGCGCACGAGGCCCTGAAGAGCGCACCCAGCTCCTTCGCGCCCG
76% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000277570.10
ENST00000379200.1
CDS CCA 72 bp GGAGCTGGGTGCGCTCTTCAGGGCCTCGTGCGCACTTaGGAAGCCGTTGGCCAGCGCCGGGTGGCTGGGCCC +
Preference number: 6 (lower is better)
Translates to: GAGCALQGLVRT*EAVGQRRVAGP
Trigger: GGGCCCAGCCACCCGGCGCTGGCCAACGGCTTCCCAAGTGCGCACGAGGCCCTGAAGAGCGCACCCAGCTCC
74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000622831.4
CDS CAA 72 bp AGGAGCTGGGTGCGCTCTTCAGGGCCTCGTGCGCACTaGGGAAGCCGTTGGCCAGCGCCGGGCCCCGCGGAG +
Preference number: 6 (lower is better)
Translates to: RSWVRSSGPRAH*GSRWPAPGPAE
Trigger: CTCCGCGGGGCCCGGCGCTGGCCAACGGCTTCCCAAGTGCGCACGAGGCCCTGAAGAGCGCACCCAGCTCCT
74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000277570.10
ENST00000379200.1
CDS CAA 72 bp AGGAGCTGGGTGCGCTCTTCAGGGCCTCGTGCGCACTaGGGAAGCCGTTGGCCAGCGCCGGGTGGCTGGGCC +
Preference number: 6 (lower is better)
Translates to: RSWVRSSGPRAH*GSRWPAPGGWA
Trigger: GGCCCAGCCACCCGGCGCTGGCCAACGGCTTCCCAAGTGCGCACGAGGCCCTGAAGAGCGCACCCAGCTCCT
72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000622831.4
CDS GCA 72 bp GCAGAGGGACTTCCCAGCGGGCGCGAAGGAGCTGGGTaGGCTCTTCAGGGCCTCGTGCGCACTTGGGAAGCC +
Preference number: 6 (lower is better)
Translates to: AEGLPSGREGAG*ALQGLVRTWEA
Trigger: GGCTTCCCAAGTGCGCACGAGGCCCTGAAGAGCGCACCCAGCTCCTTCGCGCCCGCTGGGAAGTCCCTCTGC
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000277570.10
ENST00000379200.1
ENST00000622831.4
CDS CCA 72 bp GGAAGCAGAGGGACTTCCCAGCGGGCGCGAAGGAGCTaGGTGCGCTCTTCAGGGCCTCGTGCGCACTTGGGA +
Preference number: 6 (lower is better)
Translates to: GSRGTSQRARRS*VRSSGPRAHLG
Trigger: TCCCAAGTGCGCACGAGGCCCTGAAGAGCGCACCCAGCTCCTTCGCGCCCGCTGGGAAGTCCCTCTGCTTCC
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000277570.10
ENST00000379200.1
ENST00000622831.4
CDS CCA 72 bp CACCCTCTCTTCAGGGTGGGGAGAAACGGGGTGGACTaGAGCCCGCGCGGCCCTCACGAACTCTCCCTGAGC +
Preference number: 6 (lower is better)
Translates to: HPLFRVGRNGVD*SPRGPHELSLS
Trigger: GCTCAGGGAGAGTTCGTGAGGGCCGCGCGGGCTCCAGTCCACCCCGTTTCTCCCCACCCTGAAGAGAGGGTG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000277570.10
ENST00000379200.1
ENST00000622831.4
CDS TCA 72 bp CTTCCCCGGCGCCAGGTGCTGGCTGCACTAAGTCGATaGCATCTTCAGGCTCGGAGGGACTGGAGGTGCTCT +
Preference number: 6 (lower is better)
Translates to: LPRRQVLAALSR*HLQARRDWRCS
Trigger: AGAGCACCTCCAGTCCCTCCGAGCCTGAAGATGTCATCGACTTAGTGCAGCCAGCACCTGGCGCCGGGGAAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000277570.10
ENST00000474155.1
ENST00000622831.4
CDS GCA 72 bp AGGGCTTCGTTCCCCGCCATCCTCTCGGAAATCTTCTaGGCCATAACGAGGGGCGTGGGAACAGAGCGCAGG +
Preference number: 6 (lower is better)
Translates to: RASFPAILSEIF*AITRGVGTERR
Trigger: CCTGCGCTCTGTTCCCACGCCCCTCGTTATGGCGCAGAAGATTTCCGAGAGGATGGCGGGGAACGAAGCCCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000277570.10
ENST00000379200.1
ENST00000622831.4
CDS TCA 72 bp TGGGTGGACACAGCTTTCCGAAGTGGTTGTACTGACTaGCACTTGCTTTCGGCAGGGCTGGTTGCTCTAGCG +
Preference number: 6 (lower is better)
Translates to: WVDTAFRSGCTD*HLLSAGLVALA
Trigger: CGCTAGAGCAACCAGCCCTGCCGAAAGCAAGTGTCAGTCAGTACAACCACTTCGGAAAGCTGTGTCCACCCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000474155.1
CDS TCA 72 bp TGGGTGGGTGGACACAGCTTTCCGAAGTGGTTGTACTaGCTGACACTTGCTTTCGGCAGGGCTGGTTGCTCT +
Preference number: 6 (lower is better)
Translates to: WVGGHSFPKWLY*LTLAFGRAGCS
Trigger: AGAGCAACCAGCCCTGCCGAAAGCAAGTGTCAGTCAGTACAACCACTTCGGAAAGCTGTGTCCACCCACCCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000474155.1
CDS CCA 72 bp TCGCCGGGTCTGAAGATGTGTGTCTGCTTGGGTGGGTaGACACAGCTTTCCGAAGTGGTTGTACTGACTGAC +
Preference number: 6 (lower is better)
Translates to: SPGLKMCVCLGG*TQLSEVVVLTD
Trigger: GTCAGTCAGTACAACCACTTCGGAAAGCTGTGTCCACCCACCCAAGCAGACACACATCTTCAGACCCGGCGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000474155.1
CDS GCA 72 bp ACCTATGCACAATCGCCGGGTCTGAAGATGTGTGTCTaGTTGGGTGGGTGGACACAGCTTTCCGAAGTGGTT +
Preference number: 6 (lower is better)
Translates to: TYAQSPGLKMCV*LGGWTQLSEVV
Trigger: AACCACTTCGGAAAGCTGTGTCCACCCACCCAAGCAGACACACATCTTCAGACCCGGCGATTGTGCATAGGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000474155.1
CDS CCA 72 bp ACAATCGCCGGGTCTGAAGATGTGTGTCTGCTTGGGTaGGTGGACACAGCTTTCCGAAGTGGTTGTACTGAC +
Preference number: 6 (lower is better)
Translates to: TIAGSEDVCLLG*VDTAFRSGCTD
Trigger: GTCAGTACAACCACTTCGGAAAGCTGTGTCCACCCACCCAAGCAGACACACATCTTCAGACCCGGCGATTGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000474155.1
CDS TCA 72 bp CCTGTTGGATATAAACCTATGCACAATCGCCGGGTCTaGAGATGTGTGTCTGCTTGGGTGGGTGGACACAGC +
Preference number: 6 (lower is better)
Translates to: PVGYKPMHNRRV*RCVSAWVGGHS
Trigger: GCTGTGTCCACCCACCCAAGCAGACACACATCTTCAGACCCGGCGATTGTGCATAGGTTTATATCCAACAGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000474155.1
CDS CAA 72 bp CTCATGGGTGAGGTACTTCAGGCTCTCATCATCCTGTaGGATATAAACCTATGCACAATCGCCGGGTCTGAA +
Preference number: 6 (lower is better)
Translates to: LMGEVLQALIIL*DINLCTIAGSE
Trigger: TTCAGACCCGGCGATTGTGCATAGGTTTATATCCAACAGGATGATGAGAGCCTGAAGTACCTCACCCATGAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000474155.1
CDS CAA 90 bp ATCCTTTTCCTCATGGGTGAGGTACTTCAGGCTCTCATCATCCTGTaGGATATAAACCTATGCACAATCGCCGGGTCTGAAGATGTGTGT +
Preference number: 6 (lower is better)
Translates to: ILFLMGEVLQALIIL*DINLCTIAGSEDVC
Trigger: ACACACATCTTCAGACCCGGCGATTGTGCATAGGTTTATATCCAACAGGATGATGAGAGCCTGAAGTACCTCACCCATGAGGAAAAGGAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000474155.1
CDS GCA 72 bp CTTCAGGCTCTCATCATCCTGTTGGATATAAACCTATaGACAATCGCCGGGTCTGAAGATGTGTGTCTGCTT +
Preference number: 6 (lower is better)
Translates to: LQALIILLDINL*TIAGSEDVCLL
Trigger: AAGCAGACACACATCTTCAGACCCGGCGATTGTGCATAGGTTTATATCCAACAGGATGATGAGAGCCTGAAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000474155.1