RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for PRKAB1 (Homo sapiens)

Ensembl gene IDs: ENSG00000111725

Ensembl transcript IDs: ENST00000229328.10, ENST00000537057.1, ENST00000537400.1, ENST00000538271.1, ENST00000540121.5, ENST00000541640.5, ENST00000542698.1, ENST00000545223.1, ENST00000545870.1, ENST00000630317.1

Found 311 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp GTGCTAGGAGGACTGTCACAGACCGAGGCGCTGCAGGAGCTGCTCTaGCTGGACAAACCTTCAAGCAGGACCAGGGCAGGTATGAAATGT +
Preference number: 1 (lower is better)
Translates to: VLGGLSQTEALQELL*LDKPSSRTRAGMKC
Trigger: ACATTTCATACCTGCCCTGGTCCTGCTTGAAGGTTTGTCCAGGCAGAGCAGCTCCTGCAGCGCCTCGGTCTGTGACAGTCCTCCTAGCAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000229328.10
ENST00000540121.5
ENST00000541640.5
3UTR GCA 90 bp GTTGGCCGAGCCTGGGCGGGAGCTTTATCATTCACTTCCAGATCATaGTGCCAGGCCAGGAATTCCTCCTTCTCTGGTGCCTTGAATTGT +
Preference number: 1 (lower is better)
Translates to: VGRAWAGALSFTSRS*CQARNSSFSGALNC
Trigger: ACAATTCAAGGCACCAGAGAAGGAGGAATTCCTGGCCTGGCAGCATGATCTGGAAGTGAATGATAAAGCTCCCGCCCAGGCTCGGCCAAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000537400.1
3UTR TCA 90 bp CCAGGCCTCAACAGGGACAAGTGGCTGGCCTTAAAAACACACAGATaGCTGGAAATGATGTGTGGCCTCAGTCCCTGTTTCCCAGAATTT +
Preference number: 1 (lower is better)
Translates to: PGLNRDKWLALKTHR*LEMMCGLSPCFPEF
Trigger: AAATTCTGGGAAACAGGGACTGAGGCCACACATCATTTCCAGTCATCTGTGTGTTTTTAAGGCCAGCCACTTGTCCCTGTTGAGGCCTGG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000229328.10
ENST00000540121.5
ENST00000541640.5
3UTR TCA 90 bp AGCAGGACCAGGGCAGGTATGAAATGTCTTCTGAAGAGTGTGAAATaGGCAATGTACAGTCCATTCCCTCTTGGGGAAAGCATGCACGTG +
Preference number: 1 (lower is better)
Translates to: SRTRAGMKCLLKSVK*AMYSPFPLGESMHV
Trigger: CACGTGCATGCTTTCCCCAAGAGGGAATGGACTGTACATTGCTCATTTCACACTCTTCAGAAGACATTTCATACCTGCCCTGGTCCTGCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000229328.10
ENST00000540121.5
ENST00000541640.5
3UTR CCA 90 bp CAAGTGGCTGGCCTTAAAAACACACAGATGACTGGAAATGATGTGTaGCCTCAGTCCCTGTTTCCCAGAATTTTACTGGCAAAGGAGTTA +
Preference number: 1 (lower is better)
Translates to: QVAGLKNTQMTGNDV*PQSLFPRILLAKEL
Trigger: TAACTCCTTTGCCAGTAAAATTCTGGGAAACAGGGACTGAGGCCACACATCATTTCCAGTCATCTGTGTGTTTTTAAGGCCAGCCACTTG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000229328.10
ENST00000540121.5
ENST00000541640.5
3UTR-3UTR GCA 90 bp ATAACGGGAGCTTCCGCTGACTCACAGCAACCTGGGCTAGTGGGTACATCTGTGCCGCGGGGCCAGGGCTaGAGATCCTCTGCCACCCCT +
Preference number: 2 (lower is better)
Translates to: ITGASADSQQPGLVGTSVPRGQG*RSSATP
Trigger: AGGGGTGGCAGAGGATCTGCAGCCCTGGCCCCGCGG...CACAGATGTACCCACTAGCCCAGGTTGCTGTGAGTCAGCGGAAGCTCCCGTTAT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000229328.10
ENST00000541640.5
3UTR-3UTR GCA 90 bp AACTCAGGTATACCAAGTAAATACTGGAACCCAGGGAGCTCACTCCTCCCTCTCCTGCACCCAGCCTCATaGACCGCGGGGCCAGGGCTG +
Preference number: 2 (lower is better)
Translates to: NSGIPSKYWNPGSSLLPLLHPAS*TAGPGL
Trigger: CAGCCCTGGCCCCGCGGTGCATGAGGCTGGGTGCAG...GAGAGGGAGGAGTGAGCTCCCTGGGTTCCAGTATTTACTTGGTATACCTGAGTT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000229328.10
ENST00000541640.5
3UTR-3UTR GCA 90 bp CCCCGTCCATCGAAACACCGTTGGCCGAGCCTGGGCGGGAGCTTTATCATTCACGGGGCGGTTTCCCCATaGTGTTCTCTGACAGTGAGT +
Preference number: 2 (lower is better)
Translates to: PRPSKHRWPSLGGSFIIHGAVSP*CSLTVS
Trigger: ACTCACTGTCAGAGAACAGCATGGGGAAACCGCCCC...GTGAATGATAAAGCTCCCGCCCAGGCTCGGCCAACGGTGTTTCGATGGACGGGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000537400.1
3UTR-3UTR GCA 90 bp CAAGTGGCTGGCCTTAAAAACACACAGATGACTGGAAATGATGTGTGGCCTCAGCTGCACCCAGCCTCATaGACCGCGGGGCCAGGGCTG +
Preference number: 2 (lower is better)
Translates to: QVAGLKNTQMTGNDVWPQLHPAS*TAGPGL
Trigger: CAGCCCTGGCCCCGCGGTGCATGAGGCTGGGTGCAG...CTGAGGCCACACATCATTTCCAGTCATCTGTGTGTTTTTAAGGCCAGCCACTTG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000229328.10
ENST00000540121.5
ENST00000541640.5
3UTR-3UTR CCA 90 bp GAGAATGTAGGTTTAGAACTGCACCCAGCCTCATGCACCGCGGGGCCAGGGCTGCAGTCCATTCCCTCTTaGGGAAAGCATGCACGTGTG +
Preference number: 2 (lower is better)
Translates to: ENVGLELHPASCTAGPGLQSIPS*GKHARV
Trigger: CACACGTGCATGCTTTCCCCAAGAGGGAATGGACTG...CAGCCCTGGCCCCGCGGTGCATGAGGCTGGGTGCAGTTCTAAACCTACATTCTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000229328.10
ENST00000540121.5
ENST00000541640.5
3UTR-3UTR GCA 90 bp ATAACGGGAGCTTCCGCTGACTCACAGCAACCTGGGCTAGTGGGTACATCTGTGAGGCGCTGCAGGAGCTaGTCTGCCTGGACAAACCTT +
Preference number: 2 (lower is better)
Translates to: ITGASADSQQPGLVGTSVRRCRS*SAWTNL
Trigger: AAGGTTTGTCCAGGCAGAGCAGCTCCTGCAGCGCCT...CACAGATGTACCCACTAGCCCAGGTTGCTGTGAGTCAGCGGAAGCTCCCGTTAT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000229328.10
ENST00000541640.5
3UTR-3UTR CCA 90 bp AACACCGTTGGCCGAGCCTGGGCGGGAGCTTTATCATTCACTTCCAGATCATGCAAGGGCAGGACCAGGTaGAGGTATCGATCATGGGGG +
Preference number: 2 (lower is better)
Translates to: NTVGRAWAGALSFTSRSCKGRTR*RYRSWG
Trigger: CCCCCATGATCGATACCTCCACCTGGTCCTGCCCTT...GCATGATCTGGAAGTGAATGATAAAGCTCCCGCCCAGGCTCGGCCAACGGTGTT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000537400.1
3UTR-3UTR TCA 90 bp AAAGCCATGGGGGTGCTAGGAGGACTGTCACAGACCGAGGCGCTGCAGGAGCTGCTGAAGAGTGTGAAATaGGCAATGTACAGTCCATTC +
Preference number: 2 (lower is better)
Translates to: KAMGVLGGLSQTEALQELLKSVK*AMYSPF
Trigger: GAATGGACTGTACATTGCTCATTTCACACTCTTCAG...CAGCTCCTGCAGCGCCTCGGTCTGTGACAGTCCTCCTAGCACCCCCATGGCTTT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000229328.10
ENST00000540121.5
ENST00000541640.5
3UTR-3UTR GCA 90 bp GGCAAGACCAACACTGTATTTAGTTCCATAGCCAGGCCTCAACAGGGACAAGTGTGGAGCCTGGTGGTGTaGTGTCTCCTGGGCCACCAT +
Preference number: 2 (lower is better)
Translates to: GKTNTVFSSIARPQQGQVWSLVV*CLLGHH
Trigger: ATGGTGGCCCAGGAGACAGCACACCACCAGGCTCCA...CACTTGTCCCTGTTGAGGCCTGGCTATGGAACTAAATACAGTGTTGGTCTTGCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000229328.10
ENST00000540121.5
ENST00000541640.5
3UTR-3UTR GCA 90 bp TACCCCCAAACTCAGGTATACCAAGTAAATACTGGAACCCAGGGAGCTCACTCCTGGAGCCTGGTGGTGTaGTGTCTCCTGGGCCACCAT +
Preference number: 2 (lower is better)
Translates to: YPQTQVYQVNTGTQGAHSWSLVV*CLLGHH
Trigger: ATGGTGGCCCAGGAGACAGCACACCACCAGGCTCCA...GGAGTGAGCTCCCTGGGTTCCAGTATTTACTTGGTATACCTGAGTTTGGGGGTA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000229328.10
ENST00000541640.5
3UTR-3UTR GCA 90 bp TTTGGCTTAAGAAAAATCGAGAATGTAGGTTTAGAACTGCACCCAGCCTCATGCCCGCGGGGCCAGGGCTaGAGATCCTCTGCCACCCCT +
Preference number: 2 (lower is better)
Translates to: FGLRKIENVGLELHPASCPRGQG*RSSATP
Trigger: AGGGGTGGCAGAGGATCTGCAGCCCTGGCCCCGCGG...GCATGAGGCTGGGTGCAGTTCTAAACCTACATTCTCGATTTTTCTTAAGCCAAA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENST00000229328.10
ENST00000540121.5
ENST00000541640.5
3UTR-3UTR GCA 90 bp GGCAAGACCAACACTGTATTTAGTTCCATAGCCAGGCCTCAACAGGGACAAGTGGGGCTGCAGATCCTCTaGCACCCCTCCCTCTTTTCT +
Preference number: 2 (lower is better)
Translates to: GKTNTVFSSIARPQQGQVGLQIL*HPSLFS
Trigger: AGAAAAGAGGGAGGGGTGGCAGAGGATCTGCAGCCC...CACTTGTCCCTGTTGAGGCCTGGCTATGGAACTAAATACAGTGTTGGTCTTGCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENST00000229328.10
ENST00000540121.5
ENST00000541640.5
3UTR-3UTR CCA 90 bp ATAACGGGAGCTTCCGCTGACTCACAGCAACCTGGGCTAGTGGGTACATCTGTGAACCTGCCAGCTAACTaGTCAGTCCTGAGGATCATC +
Preference number: 2 (lower is better)
Translates to: ITGASADSQQPGLVGTSVNLPAN*SVLRII
Trigger: GATGATCCTCAGGACTGACCAGTTAGCTGGCAGGTT...CACAGATGTACCCACTAGCCCAGGTTGCTGTGAGTCAGCGGAAGCTCCCGTTAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000229328.10
ENST00000541640.5
3UTR-3UTR GCA 90 bp GAGGTCCTGAGCAAGGTGCCACGGGACCTTGTAAAATCACGCTGTGTGATTTTACTGCAGGAGCTGCTCTaGCTGGACAAACCTTCAAGC +
Preference number: 2 (lower is better)
Translates to: EVLSKVPRDLVKSRCVILLQELL*LDKPSS
Trigger: GCTTGAAGGTTTGTCCAGGCAGAGCAGCTCCTGCAG...TAAAATCACACAGCGTGATTTTACAAGGTCCCGTGGCACCTTGCTCAGGACCTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000229328.10
ENST00000541640.5
3UTR-3UTR GCA 90 bp CAAGTGGCTGGCCTTAAAAACACACAGATGACTGGAAATGATGTGTGGCCTCAGCTGCAGGAGCTGCTCTaGCTGGACAAACCTTCAAGC +
Preference number: 2 (lower is better)
Translates to: QVAGLKNTQMTGNDVWPQLQELL*LDKPSS
Trigger: GCTTGAAGGTTTGTCCAGGCAGAGCAGCTCCTGCAG...CTGAGGCCACACATCATTTCCAGTCATCTGTGTGTTTTTAAGGCCAGCCACTTG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000229328.10
ENST00000540121.5
ENST00000541640.5
3UTR-3UTR CCA 90 bp AACTCAGGTATACCAAGTAAATACTGGAACCCAGGGAGCTCACTCCTCCCTCTCCAGTCCATTCCCTCTTaGGGAAAGCATGCACGTGTG +
Preference number: 2 (lower is better)
Translates to: NSGIPSKYWNPGSSLLPLQSIPS*GKHARV
Trigger: CACACGTGCATGCTTTCCCCAAGAGGGAATGGACTG...GAGAGGGAGGAGTGAGCTCCCTGGGTTCCAGTATTTACTTGGTATACCTGAGTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000229328.10
ENST00000541640.5
3UTR-3UTR CCA 90 bp GACAAACCTTCAAGCAGGACCAGGGCAGGTATGAAATGTCTTCTGAAGAGTGTGCAGTCCATTCCCTCTTaGGGAAAGCATGCACGTGTG +
Preference number: 2 (lower is better)
Translates to: DKPSSRTRAGMKCLLKSVQSIPS*GKHARV
Trigger: CACACGTGCATGCTTTCCCCAAGAGGGAATGGACTG...CACACTCTTCAGAAGACATTTCATACCTGCCCTGGTCCTGCTTGAAGGTTTGTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000229328.10
ENST00000540121.5
ENST00000541640.5
3UTR-3UTR CCA 90 bp ATGGGGGCGGTTTCCCCATGCTGTTCTCTGACAGTGAGTGAGTCTCATGAGATCGGTTTTATAAGCATCTaGCATTTCCCCTGCTTGCTC +
Preference number: 2 (lower is better)
Translates to: MGAVSPCCSLTVSESHEIGFISI*HFPCLL
Trigger: GAGCAAGCAGGGGAAATGCCAGATGCTTATAAAACC...GATCTCATGAGACTCACTCACTGTCAGAGAACAGCATGGGGAAACCGCCCCCAT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENST00000537400.1
3UTR-3UTR TCA 90 bp GAGGTCCTGAGCAAGGTGCCACGGGACCTTGTAAAATCACGCTGTGTGATTTTAAATCCGGCAGCAGGTTaGAAAGTCTGTTCTGAGAAC +
Preference number: 2 (lower is better)
Translates to: EVLSKVPRDLVKSRCVILNPAAG*KVCSEN
Trigger: GTTCTCAGAACAGACTTTTCAACCTGCTGCCGGATT...TAAAATCACACAGCGTGATTTTACAAGGTCCCGTGGCACCTTGCTCAGGACCTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000229328.10
ENST00000541640.5
3UTR-3UTR GCA 90 bp TTTGGCTTAAGAAAAATCGAGAATGTAGGTTTAGAACTGCACCCAGCCTCATGCGGGCTGCAGATCCTCTaGCACCCCTCCCTCTTTTCT +
Preference number: 2 (lower is better)
Translates to: FGLRKIENVGLELHPASCGLQIL*HPSLFS
Trigger: AGAAAAGAGGGAGGGGTGGCAGAGGATCTGCAGCCC...GCATGAGGCTGGGTGCAGTTCTAAACCTACATTCTCGATTTTTCTTAAGCCAAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENST00000229328.10
ENST00000540121.5
ENST00000541640.5
3UTR-3UTR GCA 90 bp CAATCTGTTGTTGATTTTGAAGGACAGGCAAGACCAACACTGTATTTAGTTCCATGGAGCCTGGTGGTGTaGTGTCTCCTGGGCCACCAT +
Preference number: 2 (lower is better)
Translates to: QSVVDFEGQARPTLYLVPWSLVV*CLLGHH
Trigger: ATGGTGGCCCAGGAGACAGCACACCACCAGGCTCCA...TGGAACTAAATACAGTGTTGGTCTTGCCTGTCCTTCAAAATCAACAACAGATTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000229328.10
ENST00000540121.5
ENST00000541640.5
3UTR-3UTR TCA 90 bp AACTCAGGTATACCAAGTAAATACTGGAACCCAGGGAGCTCACTCCTCCCTCTCCTGAAGAGTGTGAAATaGGCAATGTACAGTCCATTC +
Preference number: 2 (lower is better)
Translates to: NSGIPSKYWNPGSSLLPLLKSVK*AMYSPF
Trigger: GAATGGACTGTACATTGCTCATTTCACACTCTTCAG...GAGAGGGAGGAGTGAGCTCCCTGGGTTCCAGTATTTACTTGGTATACCTGAGTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000229328.10
ENST00000541640.5
3UTR-3UTR TCA 90 bp GAGGTCCTGAGCAAGGTGCCACGGGACCTTGTAAAATCACGCTGTGTGATTTTACTGAAGAGTGTGAAATaGGCAATGTACAGTCCATTC +
Preference number: 2 (lower is better)
Translates to: EVLSKVPRDLVKSRCVILLKSVK*AMYSPF
Trigger: GAATGGACTGTACATTGCTCATTTCACACTCTTCAG...TAAAATCACACAGCGTGATTTTACAAGGTCCCGTGGCACCTTGCTCAGGACCTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000229328.10
ENST00000541640.5
3UTR-3UTR TCA 90 bp ATCATTCACTTCCAGATCATGCTGCCAGGCCAGGAATTCCTCCTTCTCTGGTGCGAGTCTCATGAGATCTaGTGGTTTTATAAGCATCTG +
Preference number: 2 (lower is better)
Translates to: IIHFQIMLPGQEFLLLWCESHEI*WFYKHL
Trigger: CAGATGCTTATAAAACCATCAGATCTCATGAGACTC...GCACCAGAGAAGGAGGAATTCCTGGCCTGGCAGCATGATCTGGAAGTGAATGAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000537400.1
3UTR-3UTR GCA 90 bp TACCCCCAAACTCAGGTATACCAAGTAAATACTGGAACCCAGGGAGCTCACTCCAGAGCCAGCCACCTCTaGTTACAAAAAGAGTACTTA +
Preference number: 2 (lower is better)
Translates to: YPQTQVYQVNTGTQGAHSRASHL*LQKEYL
Trigger: TAAGTACTCTTTTTGTAAGCAGAGGTGGCTGGCTCT...GGAGTGAGCTCCCTGGGTTCCAGTATTTACTTGGTATACCTGAGTTTGGGGGTA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000229328.10
ENST00000541640.5
3UTR GCA 72 bp GGACTGTCACAGACCGAGGCGCTGCAGGAGCTGCTCTaGCTGGACAAACCTTCAAGCAGGACCAGGGCAGGT +
Preference number: 3 (lower is better)
Translates to: GLSQTEALQELL*LDKPSSRTRAG
Trigger: ACCTGCCCTGGTCCTGCTTGAAGGTTTGTCCAGGCAGAGCAGCTCCTGCAGCGCCTCGGTCTGTGACAGTCC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000229328.10
ENST00000540121.5
ENST00000541640.5
3UTR GCA 72 bp ATCGAGAATGTAGGTTTAGAACTGCACCCAGCCTCATaGACCGCGGGGCCAGGGCTGCAGATCCTCTGCCAC +
Preference number: 3 (lower is better)
Translates to: IENVGLELHPAS*TAGPGLQILCH
Trigger: GTGGCAGAGGATCTGCAGCCCTGGCCCCGCGGTGCATGAGGCTGGGTGCAGTTCTAAACCTACATTCTCGAT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000229328.10
ENST00000540121.5
ENST00000541640.5
3UTR-3UTR CAA 90 bp AGACCGAGGCGCTGCAGGAGCTGCTCTGCCTGGACAAACCTTCAAGCAGGACCAACAGTCCATTCCCTCTaGGGGAAAGCATGCACGTGT +
Preference number: 3 (lower is better)
Translates to: RPRRCRSCSAWTNLQAGPTVHSL*GKACTC
Trigger: ACACGTGCATGCTTTCCCCAAGAGGGAATGGACTGT...TGGTCCTGCTTGAAGGTTTGTCCAGGCAGAGCAGCTCCTGCAGCGCCTCGGTCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000229328.10
ENST00000540121.5
ENST00000541640.5
3UTR TCA 72 bp CCCACCAGGAGCAAAGGGCATAACGGGAGCTTCCGCTaGCTCACAGCAACCTGGGCTAGTGGGTACATCTGT +
Preference number: 3 (lower is better)
Translates to: PTRSKGHNGSFR*LTATWASGYIC
Trigger: ACAGATGTACCCACTAGCCCAGGTTGCTGTGAGTCAGCGGAAGCTCCCGTTATGCCCTTTGCTCCTGGTGGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000229328.10
ENST00000541640.5
3UTR-3UTR CAA 90 bp ACTGTCACAGACCGAGGCGCTGCAGGAGCTGCTCTGCCTGGACAAACCTTCAAGACAGTCCATTCCCTCTaGGGGAAAGCATGCACGTGT +
Preference number: 3 (lower is better)
Translates to: TVTDRGAAGAALPGQTFKTVHSL*GKACTC
Trigger: ACACGTGCATGCTTTCCCCAAGAGGGAATGGACTGT...CTTGAAGGTTTGTCCAGGCAGAGCAGCTCCTGCAGCGCCTCGGTCTGTGACAGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000229328.10
ENST00000540121.5
ENST00000541640.5
3UTR-3UTR CAA 90 bp ATCGAGAATGTAGGTTTAGAACTGCACCCAGCCTCATGCACCGCGGGGCCAGGGACAGTCCATTCCCTCTaGGGGAAAGCATGCACGTGT +
Preference number: 3 (lower is better)
Translates to: IENVGLELHPASCTAGPGTVHSL*GKACTC
Trigger: ACACGTGCATGCTTTCCCCAAGAGGGAATGGACTGT...CCCTGGCCCCGCGGTGCATGAGGCTGGGTGCAGTTCTAAACCTACATTCTCGAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000229328.10
ENST00000540121.5
ENST00000541640.5
3UTR GCA 72 bp CAGGTGGAGGTATCGATCATGGGGGCGGTTTCCCCATaGTGTTCTCTGACAGTGAGTGAGTCTCATGAGATC +
Preference number: 3 (lower is better)
Translates to: QVEVSIMGAVSP*CSLTVSESHEI
Trigger: GATCTCATGAGACTCACTCACTGTCAGAGAACAGCATGGGGAAACCGCCCCCATGATCGATACCTCCACCTG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000537400.1
3UTR-3UTR CAA 90 bp AAAATCGAGAATGTAGGTTTAGAACTGCACCCAGCCTCATGCACCGCGGGGCCACCTCTTTTCTTGGACTaGATGAGTCCCCGAGGCTCA +
Preference number: 3 (lower is better)
Translates to: KIENVGLELHPASCTAGPPLFLD*MSPRGS
Trigger: TGAGCCTCGGGGACTCATCAAGTCCAAGAAAAGAGG...TGGCCCCGCGGTGCATGAGGCTGGGTGCAGTTCTAAACCTACATTCTCGATTTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 3 transcripts:
ENST00000229328.10
ENST00000540121.5
ENST00000541640.5
3UTR CCA 72 bp GAGTGTGAAATGAGCAATGTACAGTCCATTCCCTCTTaGGGAAAGCATGCACGTGTGGAGCCTGGTGGTGTG +
Preference number: 3 (lower is better)
Translates to: ECEMSNVQSIPS*GKHARVEPGGV
Trigger: CACACCACCAGGCTCCACACGTGCATGCTTTCCCCAAGAGGGAATGGACTGTACATTGCTCATTTCACACTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000229328.10
ENST00000540121.5
ENST00000541640.5
3UTR-3UTR CAA 90 bp TACCCCCAAACTCAGGTATACCAAGTAAATACTGGAACCCAGGGAGCTCACTCCGCAACTGCTGCAGTCTaGCTAACTAGGGGCAGAGGT +
Preference number: 3 (lower is better)
Translates to: YPQTQVYQVNTGTQGAHSATAAV*LTRGRG
Trigger: ACCTCTGCCCCTAGTTAGCAAGACTGCAGCAGTTGC...GGAGTGAGCTCCCTGGGTTCCAGTATTTACTTGGTATACCTGAGTTTGGGGGTA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000229328.10
ENST00000541640.5
3UTR-3UTR CAA 90 bp TACCCCCAAACTCAGGTATACCAAGTAAATACTGGAACCCAGGGAGCTCACTCCCCTCTTTTCTTGGACTaGATGAGTCCCCGAGGCTCA +
Preference number: 3 (lower is better)
Translates to: YPQTQVYQVNTGTQGAHSPLFLD*MSPRGS
Trigger: TGAGCCTCGGGGACTCATCAAGTCCAAGAAAAGAGG...GGAGTGAGCTCCCTGGGTTCCAGTATTTACTTGGTATACCTGAGTTTGGGGGTA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENST00000229328.10
ENST00000541640.5
3UTR-3UTR CAA 90 bp TACCCCCAAACTCAGGTATACCAAGTAAATACTGGAACCCAGGGAGCTCACTCCAATCTGTTGTTGATTTaGAAGGACAGGCAAGACCAA +
Preference number: 3 (lower is better)
Translates to: YPQTQVYQVNTGTQGAHSNLLLI*KDRQDQ
Trigger: TTGGTCTTGCCTGTCCTTCAAAATCAACAACAGATT...GGAGTGAGCTCCCTGGGTTCCAGTATTTACTTGGTATACCTGAGTTTGGGGGTA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000229328.10
ENST00000541640.5
3UTR TCA 72 bp AGGGCAGGTATGAAATGTCTTCTGAAGAGTGTGAAATaGGCAATGTACAGTCCATTCCCTCTTGGGGAAAGC +
Preference number: 3 (lower is better)
Translates to: RAGMKCLLKSVK*AMYSPFPLGES
Trigger: GCTTTCCCCAAGAGGGAATGGACTGTACATTGCTCATTTCACACTCTTCAGAAGACATTTCATACCTGCCCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000229328.10
ENST00000540121.5
ENST00000541640.5
CDS-3UTR GCA 90 bp TGCACCCAGCCTCATGCACCGCGGGGCCAGGGCTGCAGATCCTCTGCCACCCCTGTCTTATGGCCACCATaGCGCTCCAGCGCGGCGCGC +
Preference number: 4 (lower is better)
Translates to: CTQPHAPRGQGCRSSATPVLWPP*RSSAAR
Trigger: GCGCGCCGCGCTGGAGCGGCATGGTGGCCATAAGAC...AGGGGTGGCAGAGGATCTGCAGCCCTGGCCCCGCGGTGCATGAGGCTGGGTGCA
70% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000229328.10
ENST00000541640.5
CDS-3UTR CCA 90 bp TGCACCCAGCCTCATGCACCGCGGGGCCAGGGCTGCAGATCCTCTGCCACCCCTCTCCGGGGCGTCTTATaGCCACCATGCCGCTCCAGC +
Preference number: 4 (lower is better)
Translates to: CTQPHAPRGQGCRSSATPLRGVL*PPCRSS
Trigger: GCTGGAGCGGCATGGTGGCCATAAGACGCCCCGGAG...AGGGGTGGCAGAGGATCTGCAGCCCTGGCCCCGCGGTGCATGAGGCTGGGTGCA
69% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000229328.10
ENST00000541640.5
CDS-3UTR GCA 90 bp TGCACCCAGCCTCATGCACCGCGGGGCCAGGGCTGCAGATCCTCTGCCACCCCTGGGGAGAATAGGGGGTaGCCGAAAGCGCTCTTCGGG +
Preference number: 4 (lower is better)
Translates to: CTQPHAPRGQGCRSSATPGENRG*PKALFG
Trigger: CCCGAAGAGCGCTTTCGGGCACCCCCTATTCTCCCC...AGGGGTGGCAGAGGATCTGCAGCCCTGGCCCCGCGGTGCATGAGGCTGGGTGCA
68% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 3 transcripts:
ENST00000229328.10
ENST00000540121.5
ENST00000541640.5
CDS-3UTR GCA 90 bp CATGGGGGTGCTAGGAGGACTGTCACAGACCGAGGCGCTGCAGGAGCTGCTCTGTGTCCCCGTCCTTGGTaGCCCCCGAGCTGTCCCTCC +
Preference number: 4 (lower is better)
Translates to: HGGARRTVTDRGAAGAALCPRPW*PPSCPS
Trigger: GGAGGGACAGCTCGGGGGGCACCAAGGACGGGGACA...CAGAGCAGCTCCTGCAGCGCCTCGGTCTGTGACAGTCCTCCTAGCACCCCCATG
67% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENST00000229328.10
ENST00000541640.5
CDS-3UTR GCA 90 bp CTGCACCCAGCCTCATGCACCGCGGGGCCAGGGCTGCAGATCCTCTGCCACCCCAGGCGCTGCAGGAGCTaGTCTGCCTGGACAAACCTT +
Preference number: 4 (lower is better)
Translates to: LHPASCTAGPGLQILCHPRRCRS*SAWTNL
Trigger: AAGGTTTGTCCAGGCAGAGCAGCTCCTGCAGCGCCT...GGGGTGGCAGAGGATCTGCAGCCCTGGCCCCGCGGTGCATGAGGCTGGGTGCAG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000229328.10
ENST00000540121.5
ENST00000541640.5
CDS-3UTR GCA 90 bp AAAGCCATGGGGGTGCTAGGAGGACTGTCACAGACCGAGGCGCTGCAGGAGCTGCTGCACCCAGCCTCATaGACCGCGGGGCCAGGGCTG +
Preference number: 4 (lower is better)
Translates to: KAMGVLGGLSQTEALQELLHPAS*TAGPGL
Trigger: CAGCCCTGGCCCCGCGGTGCATGAGGCTGGGTGCAG...CAGCTCCTGCAGCGCCTCGGTCTGTGACAGTCCTCCTAGCACCCCCATGGCTTT
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000229328.10
ENST00000540121.5
ENST00000541640.5
CDS-3UTR GCA 90 bp TGCACCCAGCCTCATGCACCGCGGGGCCAGGGCTGCAGATCCTCTGCCACCCCTGGGCTGCAGATCCTCTaGCACCCCTCCCTCTTTTCT +
Preference number: 4 (lower is better)
Translates to: CTQPHAPRGQGCRSSATPGLQIL*HPSLFS
Trigger: AGAAAAGAGGGAGGGGTGGCAGAGGATCTGCAGCCC...AGGGGTGGCAGAGGATCTGCAGCCCTGGCCCCGCGGTGCATGAGGCTGGGTGCA
66% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 3 transcripts:
ENST00000229328.10
ENST00000540121.5
ENST00000541640.5
CDS-3UTR GCA 90 bp GAGAATGTAGGTTTAGAACTGCACCCAGCCTCATGCACCGCGGGGCCAGGGCTGCCGCGGGGCCAGGGCTaGAGATCCTCTGCCACCCCT +
Preference number: 4 (lower is better)
Translates to: ENVGLELHPASCTAGPGLPRGQG*RSSATP
Trigger: AGGGGTGGCAGAGGATCTGCAGCCCTGGCCCCGCGG...CAGCCCTGGCCCCGCGGTGCATGAGGCTGGGTGCAGTTCTAAACCTACATTCTC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENST00000229328.10
ENST00000540121.5
ENST00000541640.5
CDS-3UTR GCA 90 bp CGCTGCAGGAGCTGCTCTGCCTGGACAAACCTTCAAGCAGGACCAGGGCAGGTACTGCACCCAGCCTCATaGACCGCGGGGCCAGGGCTG +
Preference number: 4 (lower is better)
Translates to: RCRSCSAWTNLQAGPGQVLHPAS*TAGPGL
Trigger: CAGCCCTGGCCCCGCGGTGCATGAGGCTGGGTGCAG...TACCTGCCCTGGTCCTGCTTGAAGGTTTGTCCAGGCAGAGCAGCTCCTGCAGCG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000229328.10
ENST00000540121.5
ENST00000541640.5
CDS-3UTR GCA 90 bp TGCACCCAGCCTCATGCACCGCGGGGCCAGGGCTGCAGATCCTCTGCCACCCCTCCGAGATTGTGCTACTaGCCTCCAGCCTGGGCAACA +
Preference number: 4 (lower is better)
Translates to: CTQPHAPRGQGCRSSATPPRLCY*PPAWAT
Trigger: TGTTGCCCAGGCTGGAGGGCAGTAGCACAATCTCGG...AGGGGTGGCAGAGGATCTGCAGCCCTGGCCCCGCGGTGCATGAGGCTGGGTGCA
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000540121.5
CDS-3UTR CCA 90 bp ACCGAGGCGCTGCAGGAGCTGCTCTGCCTGGACAAACCTTCAAGCAGGACCAGGCCTAGGGCGTGGAGGTaGCGGCGGCCAGCTAAACGC +
Preference number: 4 (lower is better)
Translates to: TEALQELLCLDKPSSRTRPRAWR*RRPAKR
Trigger: GCGTTTAGCTGGCCGCCGCCACCTCCACGCCCTAGG...CCTGGTCCTGCTTGAAGGTTTGTCCAGGCAGAGCAGCTCCTGCAGCGCCTCGGT
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000541640.5
CDS-3UTR TCA 90 bp CATGGGGGTGCTAGGAGGACTGTCACAGACCGAGGCGCTGCAGGAGCTGCTCTGACCGGTGGGTTGCGCTaGGCACCATCACTCCATCCT +
Preference number: 4 (lower is better)
Translates to: HGGARRTVTDRGAAGAALTGGLR*APSLHP
Trigger: AGGATGGAGTGATGGTGCTCAGCGCAACCCACCGGT...CAGAGCAGCTCCTGCAGCGCCTCGGTCTGTGACAGTCCTCCTAGCACCCCCATG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000229328.10
ENST00000540121.5
ENST00000541640.5
CDS-3UTR TCA 90 bp TGCACCCAGCCTCATGCACCGCGGGGCCAGGGCTGCAGATCCTCTGCCACCCCTCGACTCCCGGGAAACTaGGCTGCGTATAAAGAAGTC +
Preference number: 4 (lower is better)
Translates to: CTQPHAPRGQGCRSSATPRLPGN*AAYKEV
Trigger: GACTTCTTTATACGCAGCTCAGTTTCCCGGGAGTCG...AGGGGTGGCAGAGGATCTGCAGCCCTGGCCCCGCGGTGCATGAGGCTGGGTGCA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000229328.10
ENST00000541640.5
CDS-3UTR GCA 90 bp TGCACCCAGCCTCATGCACCGCGGGGCCAGGGCTGCAGATCCTCTGCCACCCCTACTTCCAGATCATGCTaGCAGGCCAGGAATTCCTCC +
Preference number: 4 (lower is better)
Translates to: CTQPHAPRGQGCRSSATPTSRSC*QARNSS
Trigger: GGAGGAATTCCTGGCCTGGCAGCATGATCTGGAAGT...AGGGGTGGCAGAGGATCTGCAGCCCTGGCCCCGCGGTGCATGAGGCTGGGTGCA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000229328.10
ENST00000540121.5
ENST00000541640.5
CDS-3UTR CCA 90 bp AGACCGAGGCGCTGCAGGAGCTGCTCTGCCTGGACAAACCTTCAAGCAGGACCACTCCGGGGCGTCTTATaGCCACCATGCCGCTCCAGC +
Preference number: 4 (lower is better)
Translates to: RPRRCRSCSAWTNLQAGPLRGVL*PPCRSS
Trigger: GCTGGAGCGGCATGGTGGCCATAAGACGCCCCGGAG...TGGTCCTGCTTGAAGGTTTGTCCAGGCAGAGCAGCTCCTGCAGCGCCTCGGTCT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000229328.10
ENST00000541640.5
CDS-3UTR CCA 90 bp CGCTGCAGGAGCTGCTCTGCCTGGACAAACCTTCAAGCAGGACCAGGGCAGGTACCATCGAAACACCGTTaGCCGAGCCTGGGCGGGAGC +
Preference number: 4 (lower is better)
Translates to: RCRSCSAWTNLQAGPGQVPSKHR*PSLGGS
Trigger: GCTCCCGCCCAGGCTCGGCCAACGGTGTTTCGATGG...TACCTGCCCTGGTCCTGCTTGAAGGTTTGTCCAGGCAGAGCAGCTCCTGCAGCG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000229328.10
ENST00000540121.5
ENST00000541640.5
CDS-3UTR TCA 90 bp ACCGAGGCGCTGCAGGAGCTGCTCTGCCTGGACAAACCTTCAAGCAGGACCAGGTGCTGGTATTGCCCATaGTGGGGGTCTGCCCAGGCA +
Preference number: 4 (lower is better)
Translates to: TEALQELLCLDKPSSRTRCWYCP*WGSAQA
Trigger: TGCCTGGGCAGACCCCCATCATGGGCAATACCAGCA...CCTGGTCCTGCTTGAAGGTTTGTCCAGGCAGAGCAGCTCCTGCAGCGCCTCGGT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000541640.5
CDS-3UTR GCA 90 bp CGCTGCAGGAGCTGCTCTGCCTGGACAAACCTTCAAGCAGGACCAGGGCAGGTAGGGGAGAATAGGGGGTaGCCGAAAGCGCTCTTCGGG +
Preference number: 4 (lower is better)
Translates to: RCRSCSAWTNLQAGPGQVGENRG*PKALFG
Trigger: CCCGAAGAGCGCTTTCGGGCACCCCCTATTCTCCCC...TACCTGCCCTGGTCCTGCTTGAAGGTTTGTCCAGGCAGAGCAGCTCCTGCAGCG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000229328.10
ENST00000540121.5
ENST00000541640.5
CDS-3UTR GCA 90 bp AAAGCCATGGGGGTGCTAGGAGGACTGTCACAGACCGAGGCGCTGCAGGAGCTGTGGAGCCTGGTGGTGTaGTGTCTCCTGGGCCACCAT +
Preference number: 4 (lower is better)
Translates to: KAMGVLGGLSQTEALQELWSLVV*CLLGHH
Trigger: ATGGTGGCCCAGGAGACAGCACACCACCAGGCTCCA...CAGCTCCTGCAGCGCCTCGGTCTGTGACAGTCCTCCTAGCACCCCCATGGCTTT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000229328.10
ENST00000540121.5
ENST00000541640.5
CDS-3UTR CCA 90 bp TGCACCCAGCCTCATGCACCGCGGGGCCAGGGCTGCAGATCCTCTGCCACCCCTTTAACTGTGCCAAGCTaGCTGGTTACTATGGGCTCG +
Preference number: 4 (lower is better)
Translates to: CTQPHAPRGQGCRSSATPLTVPS*LVTMGS
Trigger: CGAGCCCATAGTAACCAGCCAGCTTGGCACAGTTAA...AGGGGTGGCAGAGGATCTGCAGCCCTGGCCCCGCGGTGCATGAGGCTGGGTGCA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000229328.10
ENST00000540121.5
ENST00000541640.5
CDS-3UTR TCA 90 bp TGCACCCAGCCTCATGCACCGCGGGGCCAGGGCTGCAGATCCTCTGCCACCCCTTATTGTGGCTTCTGGTaGGGGGAAGTTTACTCCAGT +
Preference number: 4 (lower is better)
Translates to: CTQPHAPRGQGCRSSATPYCGFW*GEVYSS
Trigger: ACTGGAGTAAACTTCCCCTCACCAGAAGCCACAATA...AGGGGTGGCAGAGGATCTGCAGCCCTGGCCCCGCGGTGCATGAGGCTGGGTGCA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENST00000229328.10
ENST00000540121.5
ENST00000541640.5
CDS-3UTR TCA 90 bp AGACCGAGGCGCTGCAGGAGCTGCTCTGCCTGGACAAACCTTCAAGCAGGACCAACCGGTGGGTTGCGCTaGGCACCATCACTCCATCCT +
Preference number: 4 (lower is better)
Translates to: RPRRCRSCSAWTNLQAGPTGGLR*APSLHP
Trigger: AGGATGGAGTGATGGTGCTCAGCGCAACCCACCGGT...TGGTCCTGCTTGAAGGTTTGTCCAGGCAGAGCAGCTCCTGCAGCGCCTCGGTCT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000229328.10
ENST00000540121.5
ENST00000541640.5
CDS-3UTR TCA 90 bp TGCACCCAGCCTCATGCACCGCGGGGCCAGGGCTGCAGATCCTCTGCCACCCCTAATCCGGCAGCAGGTTaGAAAGTCTGTTCTGAGAAC +
Preference number: 4 (lower is better)
Translates to: CTQPHAPRGQGCRSSATPNPAAG*KVCSEN
Trigger: GTTCTCAGAACAGACTTTTCAACCTGCTGCCGGATT...AGGGGTGGCAGAGGATCTGCAGCCCTGGCCCCGCGGTGCATGAGGCTGGGTGCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000229328.10
ENST00000541640.5
CDS-3UTR GCA 90 bp GAGGTATCGATCATGGGGGCGGTTTCCCCATGCTGTTCTCTGACAGTGAGTGAGCGGACGGCGCCTCACTaGAGGAAAGGGACCCTGAGC +
Preference number: 4 (lower is better)
Translates to: EVSIMGAVSPCCSLTVSERTAPH*RKGTLS
Trigger: GCTCAGGGTCCCTTTCCTGCAGTGAGGCGCCGTCCG...CTCACTCACTGTCAGAGAACAGCATGGGGAAACCGCCCCCATGATCGATACCTC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000537400.1
CDS-3UTR GCA 90 bp TCACAGACCGAGGCGCTGCAGGAGCTGCTCTGCCTGGACAAACCTTCAAGCAGGCTTGTACCGGTGGGTTaGGCTGAGCACCATCACTCC +
Preference number: 4 (lower is better)
Translates to: SQTEALQELLCLDKPSSRLVPVG*AEHHHS
Trigger: GGAGTGATGGTGCTCAGCGCAACCCACCGGTACAAG...CCTGCTTGAAGGTTTGTCCAGGCAGAGCAGCTCCTGCAGCGCCTCGGTCTGTGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000229328.10
ENST00000540121.5
ENST00000541640.5
CDS-3UTR GCA 90 bp GAGAATGTAGGTTTAGAACTGCACCCAGCCTCATGCACCGCGGGGCCAGGGCTGGGGCTGCAGATCCTCTaGCACCCCTCCCTCTTTTCT +
Preference number: 4 (lower is better)
Translates to: ENVGLELHPASCTAGPGLGLQIL*HPSLFS
Trigger: AGAAAAGAGGGAGGGGTGGCAGAGGATCTGCAGCCC...CAGCCCTGGCCCCGCGGTGCATGAGGCTGGGTGCAGTTCTAAACCTACATTCTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 3 transcripts:
ENST00000229328.10
ENST00000540121.5
ENST00000541640.5
CDS-3UTR CCA 90 bp ACACCGTTGGCCGAGCCTGGGCGGGAGCTTTATCATTCACTTCCAGATCATGCTCTCCGGGGCGTCTTATaGCCACCATGCCGCTCCAGC +
Preference number: 4 (lower is better)
Translates to: TPLAEPGRELYHSLPDHALRGVL*PPCRSS
Trigger: GCTGGAGCGGCATGGTGGCCATAAGACGCCCCGGAG...AGCATGATCTGGAAGTGAATGATAAAGCTCCCGCCCAGGCTCGGCCAACGGTGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000537400.1
CDS-3UTR CCA 90 bp CCCCGTCCATCGAAACACCGTTGGCCGAGCCTGGGCGGGAGCTTTATCATTCACTGTCCATCAGGATCTTaGGCCTGTCCCCGTCCTTGG +
Preference number: 4 (lower is better)
Translates to: PRPSKHRWPSLGGSFIIHCPSGS*ACPRPW
Trigger: CCAAGGACGGGGACAGGCCCAAGATCCTGATGGACA...GTGAATGATAAAGCTCCCGCCCAGGCTCGGCCAACGGTGTTTCGATGGACGGGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000537400.1
CDS-3UTR CCA 90 bp GAGAATGTAGGTTTAGAACTGCACCCAGCCTCATGCACCGCGGGGCCAGGGCTGACCGTTGGCCGAGCCTaGGCGGGAGCTTTATCATTC +
Preference number: 4 (lower is better)
Translates to: ENVGLELHPASCTAGPGLTVGRA*AGALSF
Trigger: GAATGATAAAGCTCCCGCCCAGGCTCGGCCAACGGT...CAGCCCTGGCCCCGCGGTGCATGAGGCTGGGTGCAGTTCTAAACCTACATTCTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000229328.10
ENST00000540121.5
ENST00000541640.5
CDS-3UTR CCA 90 bp ACTGTCACAGACCGAGGCGCTGCAGGAGCTGCTCTGCCTGGACAAACCTTCAAGGCTGGCTGGTTACTATaGGCTCGGAAGGGTCGTGCG +
Preference number: 4 (lower is better)
Translates to: TVTDRGAAGAALPGQTFKAGWLL*ARKGRA
Trigger: CGCACGACCCTTCCGAGCCCATAGTAACCAGCCAGC...CTTGAAGGTTTGTCCAGGCAGAGCAGCTCCTGCAGCGCCTCGGTCTGTGACAGT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000229328.10
ENST00000540121.5
ENST00000541640.5
CDS-3UTR CCA 90 bp AGACCGAGGCGCTGCAGGAGCTGCTCTGCCTGGACAAACCTTCAAGCAGGACCACTGATGGTAGGGTCCTaGGGGAGAACTGGACAGCTC +
Preference number: 4 (lower is better)
Translates to: RPRRCRSCSAWTNLQAGPLMVGS*GRTGQL
Trigger: GAGCTGTCCAGTTCTCCCCCAGGACCCTACCATCAG...TGGTCCTGCTTGAAGGTTTGTCCAGGCAGAGCAGCTCCTGCAGCGCCTCGGTCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000229328.10
ENST00000540121.5
ENST00000541640.5
CDS-3UTR TCA 90 bp TCACAGACCGAGGCGCTGCAGGAGCTGCTCTGCCTGGACAAACCTTCAAGCAGGTGTCCTTGTTCAGGATaGCCTGGAGGAGATGTGGGG +
Preference number: 4 (lower is better)
Translates to: SQTEALQELLCLDKPSSRCPCSG*PGGDVG
Trigger: CCCCACATCTCCTCCAGGTCATCCTGAACAAGGACA...CCTGCTTGAAGGTTTGTCCAGGCAGAGCAGCTCCTGCAGCGCCTCGGTCTGTGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000229328.10
ENST00000540121.5
ENST00000541640.5
CDS-3UTR TCA 90 bp TGCACCCAGCCTCATGCACCGCGGGGCCAGGGCTGCAGATCCTCTGCCACCCCTTGTATAACAAGGTGGTaGCGTACTTCTTCTTGTACC +
Preference number: 4 (lower is better)
Translates to: CTQPHAPRGQGCRSSATPCITRW*RTSSCT
Trigger: GGTACAAGAAGAAGTACGTCACCACCTTGTTATACA...AGGGGTGGCAGAGGATCTGCAGCCCTGGCCCCGCGGTGCATGAGGCTGGGTGCA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000229328.10
ENST00000540121.5
ENST00000541640.5
CDS-3UTR TCA 90 bp GAGCAATGTACAGTCCATTCCCTCTTGGGGAAAGCATGCACGTGTGGAGCCTGGGGCAGGCGGATCTCCTaGGGTCAGGAGATGGAGACC +
Preference number: 4 (lower is better)
Translates to: EQCTVHSLLGKACTCGAWGRRIS*GQEMET
Trigger: GGTCTCCATCTCCTGACCTCAGGAGATCCGCCTGCC...CCAGGCTCCACACGTGCATGCTTTCCCCAAGAGGGAATGGACTGTACATTGCTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000540121.5
CDS-3UTR GCA 90 bp ATCATTCACTTCCAGATCATGCTGCCAGGCCAGGAATTCCTCCTTCTCTGGTGCTGTCCCCGTCCTTGGTaGCCCCCGAGCTGTCCCTCC +
Preference number: 4 (lower is better)
Translates to: IIHFQIMLPGQEFLLLWCCPRPW*PPSCPS
Trigger: GGAGGGACAGCTCGGGGGGCACCAAGGACGGGGACA...GCACCAGAGAAGGAGGAATTCCTGGCCTGGCAGCATGATCTGGAAGTGAATGAT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000537400.1
CDS-3UTR CCA 90 bp ATCGAGAATGTAGGTTTAGAACTGCACCCAGCCTCATGCACCGCGGGGCCAGGGACCGTTGGCCGAGCCTaGGCGGGAGCTTTATCATTC +
Preference number: 4 (lower is better)
Translates to: IENVGLELHPASCTAGPGTVGRA*AGALSF
Trigger: GAATGATAAAGCTCCCGCCCAGGCTCGGCCAACGGT...CCCTGGCCCCGCGGTGCATGAGGCTGGGTGCAGTTCTAAACCTACATTCTCGAT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000229328.10
ENST00000540121.5
ENST00000541640.5
CDS-3UTR CCA 90 bp ATCATGGGGGCGGTTTCCCCATGCTGTTCTCTGACAGTGAGTGAGTCTCATGAGCCATCGAAACACCGTTaGCCGAGCCTGGGCGGGAGC +
Preference number: 4 (lower is better)
Translates to: IMGAVSPCCSLTVSESHEPSKHR*PSLGGS
Trigger: GCTCCCGCCCAGGCTCGGCCAACGGTGTTTCGATGG...CTCATGAGACTCACTCACTGTCAGAGAACAGCATGGGGAAACCGCCCCCATGAT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000537400.1
CDS-3UTR CCA 90 bp AGACCGAGGCGCTGCAGGAGCTGCTCTGCCTGGACAAACCTTCAAGCAGGACCACTGTGCCAAGCTGGCTaGTTACTATGGGCTCGGAAG +
Preference number: 4 (lower is better)
Translates to: RPRRCRSCSAWTNLQAGPLCQAG*LLWARK
Trigger: CTTCCGAGCCCATAGTAACCAGCCAGCTTGGCACAG...TGGTCCTGCTTGAAGGTTTGTCCAGGCAGAGCAGCTCCTGCAGCGCCTCGGTCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000229328.10
ENST00000540121.5
ENST00000541640.5
CDS-3UTR CCA 90 bp ACCGAGGCGCTGCAGGAGCTGCTCTGCCTGGACAAACCTTCAAGCAGGACCAGGAGGAGCTGCTCTGCCTaGACAAACCTTCAAGCAGGA +
Preference number: 4 (lower is better)
Translates to: TEALQELLCLDKPSSRTRRSCSA*TNLQAG
Trigger: TCCTGCTTGAAGGTTTGTCCAGGCAGAGCAGCTCCT...CCTGGTCCTGCTTGAAGGTTTGTCCAGGCAGAGCAGCTCCTGCAGCGCCTCGGT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000229328.10
ENST00000540121.5
ENST00000541640.5
CDS-3UTR CCA 90 bp CATGGGGGTGCTAGGAGGACTGTCACAGACCGAGGCGCTGCAGGAGCTGCTCTGAACCTGCCAGCTAACTaGTCAGTCCTGAGGATCATC +
Preference number: 4 (lower is better)
Translates to: HGGARRTVTDRGAAGAALNLPAN*SVLRII
Trigger: GATGATCCTCAGGACTGACCAGTTAGCTGGCAGGTT...CAGAGCAGCTCCTGCAGCGCCTCGGTCTGTGACAGTCCTCCTAGCACCCCCATG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000229328.10
ENST00000541640.5
CDS-3UTR TCA 90 bp TTTCTTGGACTTGATGAGTCCCCGAGGCTCAAAGCCATGGGGGTGCTAGGAGGATGCTGGTATTGCCCATaGTGGGGGTCTGCGGGGACA +
Preference number: 4 (lower is better)
Translates to: FLGLDESPRLKAMGVLGGCWYCP*WGSAGT
Trigger: TGTCCCCGCAGACCCCCATCATGGGCAATACCAGCA...TCCTCCTAGCACCCCCATGGCTTTGAGCCTCGGGGACTCATCAAGTCCAAGAAA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 1 transcripts:
ENST00000229328.10
CDS-3UTR TCA 90 bp ACTGTCACAGACCGAGGCGCTGCAGGAGCTGCTCTGCCTGGACAAACCTTCAAGGGGTCGTGCGTCCACTaGCCATCCACAAAGAACTTG +
Preference number: 4 (lower is better)
Translates to: TVTDRGAAGAALPGQTFKGSCVH*PSTKNL
Trigger: CAAGTTCTTTGTGGATGGTCAGTGGACGCACGACCC...CTTGAAGGTTTGTCCAGGCAGAGCAGCTCCTGCAGCGCCTCGGTCTGTGACAGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000229328.10
ENST00000540121.5
ENST00000541640.5
CDS-3UTR TCA 90 bp ACTGTCACAGACCGAGGCGCTGCAGGAGCTGCTCTGCCTGGACAAACCTTCAAGTGTCCTTGTTCAGGATaGCCTGGAGGAGATGTGGGG +
Preference number: 4 (lower is better)
Translates to: TVTDRGAAGAALPGQTFKCPCSG*PGGDVG
Trigger: CCCCACATCTCCTCCAGGTCATCCTGAACAAGGACA...CTTGAAGGTTTGTCCAGGCAGAGCAGCTCCTGCAGCGCCTCGGTCTGTGACAGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000229328.10
ENST00000540121.5
ENST00000541640.5
CDS-3UTR TCA 90 bp TTTCTTGGACTTGATGAGTCCCCGAGGCTCAAAGCCATGGGGGTGCTAGGAGGAAACGGGAGCTTCCGCTaGCTCACAGCAACCTGGGCT +
Preference number: 4 (lower is better)
Translates to: FLGLDESPRLKAMGVLGGNGSFR*LTATWA
Trigger: AGCCCAGGTTGCTGTGAGTCAGCGGAAGCTCCCGTT...TCCTCCTAGCACCCCCATGGCTTTGAGCCTCGGGGACTCATCAAGTCCAAGAAA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000229328.10
ENST00000541640.5
CDS-3UTR GCA 90 bp ATCATTCACTTCCAGATCATGCTGCCAGGCCAGGAATTCCTCCTTCTCTGGTGCCCCATGATGGGGGTCTaGGGGGACACAGGGAAGGCG +
Preference number: 4 (lower is better)
Translates to: IIHFQIMLPGQEFLLLWCPMMGV*GDTGKA
Trigger: CGCCTTCCCTGTGTCCCCGCAGACCCCCATCATGGG...GCACCAGAGAAGGAGGAATTCCTGGCCTGGCAGCATGATCTGGAAGTGAATGAT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENST00000537400.1
CDS-3UTR GCA 90 bp ACTGTCACAGACCGAGGCGCTGCAGGAGCTGCTCTGCCTGGACAAACCTTCAAGAGCGCTCTTCGGGTTTaGAGACGTAGGGCTCCTGAT +
Preference number: 4 (lower is better)
Translates to: TVTDRGAAGAALPGQTFKSALRV*RRRAPD
Trigger: ATCAGGAGCCCTACGTCTGCAAACCCGAAGAGCGCT...CTTGAAGGTTTGTCCAGGCAGAGCAGCTCCTGCAGCGCCTCGGTCTGTGACAGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000229328.10
ENST00000540121.5
ENST00000541640.5
CDS-3UTR GCA 90 bp GAGCAATGTACAGTCCATTCCCTCTTGGGGAAAGCATGCACGTGTGGAGCCTGGTGGAGCCTGGTGGTGTaGTGTCTCCTGGGCCACCAT +
Preference number: 4 (lower is better)
Translates to: EQCTVHSLLGKACTCGAWWSLVV*CLLGHH
Trigger: ATGGTGGCCCAGGAGACAGCACACCACCAGGCTCCA...CCAGGCTCCACACGTGCATGCTTTCCCCAAGAGGGAATGGACTGTACATTGCTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000229328.10
ENST00000540121.5
ENST00000541640.5
CDS-3UTR GCA 90 bp GTGTGGCCTCAGTCCCTGTTTCCCAGAATTTTACTGGCAAAGGAGTTAGCATTCCCGCGGGGCCAGGGCTaGAGATCCTCTGCCACCCCT +
Preference number: 4 (lower is better)
Translates to: VWPQSLFPRILLAKELAFPRGQG*RSSATP
Trigger: AGGGGTGGCAGAGGATCTGCAGCCCTGGCCCCGCGG...GAATGCTAACTCCTTTGCCAGTAAAATTCTGGGAAACAGGGACTGAGGCCACAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENST00000229328.10
ENST00000540121.5
ENST00000541640.5
CDS-3UTR CCA 90 bp TCACAGACCGAGGCGCTGCAGGAGCTGCTCTGCCTGGACAAACCTTCAAGCAGGTTGATTTCCTCGGAGTaGAAGAGGTCGGCGTCTTCG +
Preference number: 4 (lower is better)
Translates to: SQTEALQELLCLDKPSSRLISSE*KRSASS
Trigger: CGAAGACGCCGACCTCTTCCACTCCGAGGAAATCAA...CCTGCTTGAAGGTTTGTCCAGGCAGAGCAGCTCCTGCAGCGCCTCGGTCTGTGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000229328.10
ENST00000541640.5
CDS-3UTR CCA 90 bp ACCGAGGCGCTGCAGGAGCTGCTCTGCCTGGACAAACCTTCAAGCAGGACCAGGTTAACTGTGCCAAGCTaGCTGGTTACTATGGGCTCG +
Preference number: 4 (lower is better)
Translates to: TEALQELLCLDKPSSRTRLTVPS*LVTMGS
Trigger: CGAGCCCATAGTAACCAGCCAGCTTGGCACAGTTAA...CCTGGTCCTGCTTGAAGGTTTGTCCAGGCAGAGCAGCTCCTGCAGCGCCTCGGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000229328.10
ENST00000540121.5
ENST00000541640.5
CDS-3UTR CCA 90 bp AGACCGAGGCGCTGCAGGAGCTGCTCTGCCTGGACAAACCTTCAAGCAGGACCATTCTTCTTGTACCGGTaGGTTGCGCTGAGCACCATC +
Preference number: 4 (lower is better)
Translates to: RPRRCRSCSAWTNLQAGPFFLYR*VALSTI
Trigger: GATGGTGCTCAGCGCAACCCACCGGTACAAGAAGAA...TGGTCCTGCTTGAAGGTTTGTCCAGGCAGAGCAGCTCCTGCAGCGCCTCGGTCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000229328.10
ENST00000540121.5
ENST00000541640.5
CDS-3UTR CCA 90 bp TCACAGACCGAGGCGCTGCAGGAGCTGCTCTGCCTGGACAAACCTTCAAGCAGGCAGTCCATTCCCTCTTaGGGAAAGCATGCACGTGTG +
Preference number: 4 (lower is better)
Translates to: SQTEALQELLCLDKPSSRQSIPS*GKHARV
Trigger: CACACGTGCATGCTTTCCCCAAGAGGGAATGGACTG...CCTGCTTGAAGGTTTGTCCAGGCAGAGCAGCTCCTGCAGCGCCTCGGTCTGTGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000229328.10
ENST00000540121.5
ENST00000541640.5
CDS-3UTR TCA 90 bp ACCGAGGCGCTGCAGGAGCTGCTCTGCCTGGACAAACCTTCAAGCAGGACCAGGTATTGTGGCTTCTGGTaGGGGGAAGTTTACTCCAGT +
Preference number: 4 (lower is better)
Translates to: TEALQELLCLDKPSSRTRYCGFW*GEVYSS
Trigger: ACTGGAGTAAACTTCCCCTCACCAGAAGCCACAATA...CCTGGTCCTGCTTGAAGGTTTGTCCAGGCAGAGCAGCTCCTGCAGCGCCTCGGT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000229328.10
ENST00000540121.5
ENST00000541640.5
CDS-3UTR TCA 90 bp ATCGAGAATGTAGGTTTAGAACTGCACCCAGCCTCATGCACCGCGGGGCCAGGGCGACTCCCGGGAAACTaGGCTGCGTATAAAGAAGTC +
Preference number: 4 (lower is better)
Translates to: IENVGLELHPASCTAGPGRLPGN*AAYKEV
Trigger: GACTTCTTTATACGCAGCTCAGTTTCCCGGGAGTCG...CCCTGGCCCCGCGGTGCATGAGGCTGGGTGCAGTTCTAAACCTACATTCTCGAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000229328.10
ENST00000541640.5
CDS-3UTR TCA 90 bp AAAATCGAGAATGTAGGTTTAGAACTGCACCCAGCCTCATGCACCGCGGGGCCAAACGGGAGCTTCCGCTaGCTCACAGCAACCTGGGCT +
Preference number: 4 (lower is better)
Translates to: KIENVGLELHPASCTAGPNGSFR*LTATWA
Trigger: AGCCCAGGTTGCTGTGAGTCAGCGGAAGCTCCCGTT...TGGCCCCGCGGTGCATGAGGCTGGGTGCAGTTCTAAACCTACATTCTCGATTTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000229328.10
ENST00000541640.5
CDS-3UTR GCA 90 bp AACTCAGGTATACCAAGTAAATACTGGAACCCAGGGAGCTCACTCCTCCCTCTCCGGACGGCGCCTCACTaGAGGAAAGGGACCCTGAGC +
Preference number: 4 (lower is better)
Translates to: NSGIPSKYWNPGSSLLPLRTAPH*RKGTLS
Trigger: GCTCAGGGTCCCTTTCCTGCAGTGAGGCGCCGTCCG...GAGAGGGAGGAGTGAGCTCCCTGGGTTCCAGTATTTACTTGGTATACCTGAGTT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000229328.10
CDS-3UTR GCA 90 bp GAGGTCCTGAGCAAGGTGCCACGGGACCTTGTAAAATCACGCTGTGTGATTTTACCCATGATGGGGGTCTaGGGGGACACAGGGAAGGCG +
Preference number: 4 (lower is better)
Translates to: EVLSKVPRDLVKSRCVILPMMGV*GDTGKA
Trigger: CGCCTTCCCTGTGTCCCCGCAGACCCCCATCATGGG...TAAAATCACACAGCGTGATTTTACAAGGTCCCGTGGCACCTTGCTCAGGACCTC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 1 transcripts:
ENST00000229328.10
CDS-3UTR GCA 90 bp ACTGTCACAGACCGAGGCGCTGCAGGAGCTGCTCTGCCTGGACAAACCTTCAAGACTTCCAGATCATGCTaGCAGGCCAGGAATTCCTCC +
Preference number: 4 (lower is better)
Translates to: TVTDRGAAGAALPGQTFKTSRSC*QARNSS
Trigger: GGAGGAATTCCTGGCCTGGCAGCATGATCTGGAAGT...CTTGAAGGTTTGTCCAGGCAGAGCAGCTCCTGCAGCGCCTCGGTCTGTGACAGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000229328.10
ENST00000540121.5
ENST00000541640.5
CDS-3UTR GCA 90 bp CGCTGCAGGAGCTGCTCTGCCTGGACAAACCTTCAAGCAGGACCAGGGCAGGTATTCACTTCCAGATCATaGTGCCAGGCCAGGAATTCC +
Preference number: 4 (lower is better)
Translates to: RCRSCSAWTNLQAGPGQVFTSRS*CQARNS
Trigger: GGAATTCCTGGCCTGGCAGCATGATCTGGAAGTGAA...TACCTGCCCTGGTCCTGCTTGAAGGTTTGTCCAGGCAGAGCAGCTCCTGCAGCG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000229328.10
ENST00000540121.5
ENST00000541640.5
CDS-3UTR GCA 90 bp TTTCTTGGACTTGATGAGTCCCCGAGGCTCAAAGCCATGGGGGTGCTAGGAGGACTTGTACCGGTGGGTTaGGCTGAGCACCATCACTCC +
Preference number: 4 (lower is better)
Translates to: FLGLDESPRLKAMGVLGGLVPVG*AEHHHS
Trigger: GGAGTGATGGTGCTCAGCGCAACCCACCGGTACAAG...TCCTCCTAGCACCCCCATGGCTTTGAGCCTCGGGGACTCATCAAGTCCAAGAAA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000229328.10
ENST00000540121.5
ENST00000541640.5
CDS-3UTR GCA 90 bp TTTCTTGGACTTGATGAGTCCCCGAGGCTCAAAGCCATGGGGGTGCTAGGAGGAAGGCGCTGCAGGAGCTaGTCTGCCTGGACAAACCTT +
Preference number: 4 (lower is better)
Translates to: FLGLDESPRLKAMGVLGGRRCRS*SAWTNL
Trigger: AAGGTTTGTCCAGGCAGAGCAGCTCCTGCAGCGCCT...TCCTCCTAGCACCCCCATGGCTTTGAGCCTCGGGGACTCATCAAGTCCAAGAAA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000229328.10
ENST00000540121.5
ENST00000541640.5
CDS-3UTR CCA 90 bp TTTCTTGGACTTGATGAGTCCCCGAGGCTCAAAGCCATGGGGGTGCTAGGAGGATGTCCATCAGGATCTTaGGCCTGTCCCCGTCCTTGG +
Preference number: 4 (lower is better)
Translates to: FLGLDESPRLKAMGVLGGCPSGS*ACPRPW
Trigger: CCAAGGACGGGGACAGGCCCAAGATCCTGATGGACA...TCCTCCTAGCACCCCCATGGCTTTGAGCCTCGGGGACTCATCAAGTCCAAGAAA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000229328.10
ENST00000541640.5
CDS-3UTR CCA 90 bp ACCGAGGCGCTGCAGGAGCTGCTCTGCCTGGACAAACCTTCAAGCAGGACCAGGGAATTCCTCCTTCTCTaGTGCCTTGATTTCCTCGGA +
Preference number: 4 (lower is better)
Translates to: TEALQELLCLDKPSSRTREFLLL*CLDFLG
Trigger: TCCGAGGAAATCAAGGCACCAGAGAAGGAGGAATTC...CCTGGTCCTGCTTGAAGGTTTGTCCAGGCAGAGCAGCTCCTGCAGCGCCTCGGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000229328.10
ENST00000541640.5
CDS-3UTR CCA 90 bp CCTGGACAAACCTTCAAGCAGGACCAGGGCAGGTATGAAATGTCTTCTGAAGAGCCATCGAAACACCGTTaGCCGAGCCTGGGCGGGAGC +
Preference number: 4 (lower is better)
Translates to: PGQTFKQDQGRYEMSSEEPSKHR*PSLGGS
Trigger: GCTCCCGCCCAGGCTCGGCCAACGGTGTTTCGATGG...CTCTTCAGAAGACATTTCATACCTGCCCTGGTCCTGCTTGAAGGTTTGTCCAGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000229328.10
ENST00000540121.5
ENST00000541640.5
CDS-3UTR CCA 90 bp TTTCTTGGACTTGATGAGTCCCCGAGGCTCAAAGCCATGGGGGTGCTAGGAGGACTGATGGTAGGGTCCTaGGGGAGAACTGGACAGCTC +
Preference number: 4 (lower is better)
Translates to: FLGLDESPRLKAMGVLGGLMVGS*GRTGQL
Trigger: GAGCTGTCCAGTTCTCCCCCAGGACCCTACCATCAG...TCCTCCTAGCACCCCCATGGCTTTGAGCCTCGGGGACTCATCAAGTCCAAGAAA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENST00000229328.10
ENST00000540121.5
ENST00000541640.5
CDS-3UTR CCA 90 bp AGACCGAGGCGCTGCAGGAGCTGCTCTGCCTGGACAAACCTTCAAGCAGGACCACTCAGGAAGCAAAGCTaGATCACAGGAAATCCCCGT +
Preference number: 4 (lower is better)
Translates to: RPRRCRSCSAWTNLQAGPLRKQS*ITGNPR
Trigger: ACGGGGATTTCCTGTGATCCAGCTTTGCTTCCTGAG...TGGTCCTGCTTGAAGGTTTGTCCAGGCAGAGCAGCTCCTGCAGCGCCTCGGTCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000229328.10
ENST00000540121.5
ENST00000541640.5
CDS-3UTR CCA 90 bp AGACCGAGGCGCTGCAGGAGCTGCTCTGCCTGGACAAACCTTCAAGCAGGACCAACTGGAAATGATGTGTaGCCTCAGTCCCTGTTTCCC +
Preference number: 4 (lower is better)
Translates to: RPRRCRSCSAWTNLQAGPTGNDV*PQSLFP
Trigger: GGGAAACAGGGACTGAGGCCACACATCATTTCCAGT...TGGTCCTGCTTGAAGGTTTGTCCAGGCAGAGCAGCTCCTGCAGCGCCTCGGTCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000229328.10
ENST00000540121.5
ENST00000541640.5
CDS-3UTR CCA 90 bp GAGAATGTAGGTTTAGAACTGCACCCAGCCTCATGCACCGCGGGGCCAGGGCTGACTGGAAATGATGTGTaGCCTCAGTCCCTGTTTCCC +
Preference number: 4 (lower is better)
Translates to: ENVGLELHPASCTAGPGLTGNDV*PQSLFP
Trigger: GGGAAACAGGGACTGAGGCCACACATCATTTCCAGT...CAGCCCTGGCCCCGCGGTGCATGAGGCTGGGTGCAGTTCTAAACCTACATTCTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000229328.10
ENST00000540121.5
ENST00000541640.5
CDS-3UTR CCA 90 bp GAGAATGTAGGTTTAGAACTGCACCCAGCCTCATGCACCGCGGGGCCAGGGCTGAACCTGCCAGCTAACTaGTCAGTCCTGAGGATCATC +
Preference number: 4 (lower is better)
Translates to: ENVGLELHPASCTAGPGLNLPAN*SVLRII
Trigger: GATGATCCTCAGGACTGACCAGTTAGCTGGCAGGTT...CAGCCCTGGCCCCGCGGTGCATGAGGCTGGGTGCAGTTCTAAACCTACATTCTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000229328.10
ENST00000541640.5
CDS-3UTR TCA 90 bp CATGGGGGTGCTAGGAGGACTGTCACAGACCGAGGCGCTGCAGGAGCTGCTCTGTGTATAACAAGGTGGTaGCGTACTTCTTCTTGTACC +
Preference number: 4 (lower is better)
Translates to: HGGARRTVTDRGAAGAALCITRW*RTSSCT
Trigger: GGTACAAGAAGAAGTACGTCACCACCTTGTTATACA...CAGAGCAGCTCCTGCAGCGCCTCGGTCTGTGACAGTCCTCCTAGCACCCCCATG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000229328.10
ENST00000540121.5
ENST00000541640.5
CDS-3UTR GCA 90 bp GAGCAATGTACAGTCCATTCCCTCTTGGGGAAAGCATGCACGTGTGGAGCCTGGCTGCAGGAGCTGCTCTaGCTGGACAAACCTTCAAGC +
Preference number: 4 (lower is better)
Translates to: EQCTVHSLLGKACTCGAWLQELL*LDKPSS
Trigger: GCTTGAAGGTTTGTCCAGGCAGAGCAGCTCCTGCAG...CCAGGCTCCACACGTGCATGCTTTCCCCAAGAGGGAATGGACTGTACATTGCTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000229328.10
ENST00000540121.5
ENST00000541640.5
CDS-3UTR CCA 90 bp CTGGGCGGGAGCTTTATCATTCACTTCCAGATCATGCTGCCAGGCCAGGAATTCACCGTTGGCCGAGCCTaGGCGGGAGCTTTATCATTC +
Preference number: 4 (lower is better)
Translates to: LGGSFIIHFQIMLPGQEFTVGRA*AGALSF
Trigger: GAATGATAAAGCTCCCGCCCAGGCTCGGCCAACGGT...GAATTCCTGGCCTGGCAGCATGATCTGGAAGTGAATGATAAAGCTCCCGCCCAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000537400.1
CDS-3UTR CCA 90 bp GTGTGGCCTCAGTCCCTGTTTCCCAGAATTTTACTGGCAAAGGAGTTAGCATTCCCATCGAAACACCGTTaGCCGAGCCTGGGCGGGAGC +
Preference number: 4 (lower is better)
Translates to: VWPQSLFPRILLAKELAFPSKHR*PSLGGS
Trigger: GCTCCCGCCCAGGCTCGGCCAACGGTGTTTCGATGG...GAATGCTAACTCCTTTGCCAGTAAAATTCTGGGAAACAGGGACTGAGGCCACAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000229328.10
ENST00000540121.5
ENST00000541640.5
CDS-3UTR CCA 90 bp TTTCTTGGACTTGATGAGTCCCCGAGGCTCAAAGCCATGGGGGTGCTAGGAGGACTGTGCCAAGCTGGCTaGTTACTATGGGCTCGGAAG +
Preference number: 4 (lower is better)
Translates to: FLGLDESPRLKAMGVLGGLCQAG*LLWARK
Trigger: CTTCCGAGCCCATAGTAACCAGCCAGCTTGGCACAG...TCCTCCTAGCACCCCCATGGCTTTGAGCCTCGGGGACTCATCAAGTCCAAGAAA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000229328.10
ENST00000540121.5
ENST00000541640.5
CDS-3UTR CCA 90 bp ATCGAGAATGTAGGTTTAGAACTGCACCCAGCCTCATGCACCGCGGGGCCAGGGTTAACTGTGCCAAGCTaGCTGGTTACTATGGGCTCG +
Preference number: 4 (lower is better)
Translates to: IENVGLELHPASCTAGPGLTVPS*LVTMGS
Trigger: CGAGCCCATAGTAACCAGCCAGCTTGGCACAGTTAA...CCCTGGCCCCGCGGTGCATGAGGCTGGGTGCAGTTCTAAACCTACATTCTCGAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000229328.10
ENST00000540121.5
ENST00000541640.5
CDS-3UTR CCA 90 bp AAAATCGAGAATGTAGGTTTAGAACTGCACCCAGCCTCATGCACCGCGGGGCCAGTCCTGGGGGAGAACTaGACAGCTCAGACACATCGG +
Preference number: 4 (lower is better)
Translates to: KIENVGLELHPASCTAGPVLGEN*TAQTHR
Trigger: CCGATGTGTCTGAGCTGTCCAGTTCTCCCCCAGGAC...TGGCCCCGCGGTGCATGAGGCTGGGTGCAGTTCTAAACCTACATTCTCGATTTT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENST00000229328.10
ENST00000540121.5
ENST00000541640.5
CDS-3UTR CCA 90 bp AGACCGAGGCGCTGCAGGAGCTGCTCTGCCTGGACAAACCTTCAAGCAGGACCACCCCAGCTCTTCATATaGGCTTGTATAACAAGGTGG +
Preference number: 4 (lower is better)
Translates to: RPRRCRSCSAWTNLQAGPPQLFI*ACITRW
Trigger: CCACCTTGTTATACAAGCCCATATGAAGAGCTGGGG...TGGTCCTGCTTGAAGGTTTGTCCAGGCAGAGCAGCTCCTGCAGCGCCTCGGTCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000229328.10
ENST00000540121.5
ENST00000541640.5
CDS-3UTR CCA 90 bp AGACCGAGGCGCTGCAGGAGCTGCTCTGCCTGGACAAACCTTCAAGCAGGACCACTCAACAGGGACAAGTaGCTGGCCTTAAAAACACAC +
Preference number: 4 (lower is better)
Translates to: RPRRCRSCSAWTNLQAGPLNRDK*LALKTH
Trigger: GTGTGTTTTTAAGGCCAGCCACTTGTCCCTGTTGAG...TGGTCCTGCTTGAAGGTTTGTCCAGGCAGAGCAGCTCCTGCAGCGCCTCGGTCT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000229328.10
ENST00000540121.5
ENST00000541640.5
CDS-3UTR CCA 90 bp ATCGAGAATGTAGGTTTAGAACTGCACCCAGCCTCATGCACCGCGGGGCCAGGGGAAATGACACCTCCCTaGAGCCGAGAGACAATCTGT +
Preference number: 4 (lower is better)
Translates to: IENVGLELHPASCTAGPGEMTPP*SRETIC
Trigger: ACAGATTGTCTCTCGGCTCCAGGGAGGTGTCATTTC...CCCTGGCCCCGCGGTGCATGAGGCTGGGTGCAGTTCTAAACCTACATTCTCGAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000229328.10
ENST00000541640.5
CDS-3UTR CCA 90 bp AAAATCGAGAATGTAGGTTTAGAACTGCACCCAGCCTCATGCACCGCGGGGCCAGAGGCTGAGGCAGGATaGTTTGAGTCCGGGAGACGA +
Preference number: 4 (lower is better)
Translates to: KIENVGLELHPASCTAGPEAEAG*FESGRR
Trigger: TCGTCTCCCGGACTCAAACCATCCTGCCTCAGCCTC...TGGCCCCGCGGTGCATGAGGCTGGGTGCAGTTCTAAACCTACATTCTCGATTTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000540121.5
CDS-3UTR TCA 90 bp GTGTGGCCTCAGTCCCTGTTTCCCAGAATTTTACTGGCAAAGGAGTTAGCATTCGCAGGAAAGGGACCCTaGGCAAGGGACTCCCGGAAC +
Preference number: 4 (lower is better)
Translates to: VWPQSLFPRILLAKELAFAGKGP*ARDSRN
Trigger: GTTCCGGGAGTCCCTTGCTCAGGGTCCCTTTCCTGC...GAATGCTAACTCCTTTGCCAGTAAAATTCTGGGAAACAGGGACTGAGGCCACAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000229328.10
CDS-3UTR TCA 90 bp GCTTTATCATTCACTTCCAGATCATGCTGCCAGGCCAGGAATTCCTCCTTCTCTGCAGGAAAGGGACCCTaGGCAAGGGACTCCCGGAAC +
Preference number: 4 (lower is better)
Translates to: ALSFTSRSCCQARNSSFSAGKGP*ARDSRN
Trigger: GTTCCGGGAGTCCCTTGCTCAGGGTCCCTTTCCTGC...AGAGAAGGAGGAATTCCTGGCCTGGCAGCATGATCTGGAAGTGAATGATAAAGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000537400.1
CDS-3UTR TCA 90 bp ACCGAGGCGCTGCAGGAGCTGCTCTGCCTGGACAAACCTTCAAGCAGGACCAGGCTGAAGAGTGTGAAATaGGCAATGTACAGTCCATTC +
Preference number: 4 (lower is better)
Translates to: TEALQELLCLDKPSSRTRLKSVK*AMYSPF
Trigger: GAATGGACTGTACATTGCTCATTTCACACTCTTCAG...CCTGGTCCTGCTTGAAGGTTTGTCCAGGCAGAGCAGCTCCTGCAGCGCCTCGGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000229328.10
ENST00000540121.5
ENST00000541640.5
CDS-3UTR TCA 90 bp ATCGAGAATGTAGGTTTAGAACTGCACCCAGCCTCATGCACCGCGGGGCCAGGGAATCCGGCAGCAGGTTaGAAAGTCTGTTCTGAGAAC +
Preference number: 4 (lower is better)
Translates to: IENVGLELHPASCTAGPGNPAAG*KVCSEN
Trigger: GTTCTCAGAACAGACTTTTCAACCTGCTGCCGGATT...CCCTGGCCCCGCGGTGCATGAGGCTGGGTGCAGTTCTAAACCTACATTCTCGAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000229328.10
ENST00000541640.5
CDS-3UTR TCA 90 bp AGACCGAGGCGCTGCAGGAGCTGCTCTGCCTGGACAAACCTTCAAGCAGGACCAGGTGCCTCTAGAAGCTaGAAGACTTTTCTATGTACG +
Preference number: 4 (lower is better)
Translates to: RPRRCRSCSAWTNLQAGPGASRS*KTFLCT
Trigger: CGTACATAGAAAAGTCTTTCAGCTTCTAGAGGCACC...TGGTCCTGCTTGAAGGTTTGTCCAGGCAGAGCAGCTCCTGCAGCGCCTCGGTCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000540121.5
CDS-3UTR GCA 90 bp CAAGTGGCTGGCCTTAAAAACACACAGATGACTGGAAATGATGTGTGGCCTCAGGGGGAGAATAGGGGGTaGCCGAAAGCGCTCTTCGGG +
Preference number: 4 (lower is better)
Translates to: QVAGLKNTQMTGNDVWPQGENRG*PKALFG
Trigger: CCCGAAGAGCGCTTTCGGGCACCCCCTATTCTCCCC...CTGAGGCCACACATCATTTCCAGTCATCTGTGTGTTTTTAAGGCCAGCCACTTG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 15 nt.
Matches the following 3 transcripts:
ENST00000229328.10
ENST00000540121.5
ENST00000541640.5
CDS-3UTR GCA 90 bp AAAATCGAGAATGTAGGTTTAGAACTGCACCCAGCCTCATGCACCGCGGGGCCACTGCAGGAGCTGCTCTaGCTGGACAAACCTTCAAGC +
Preference number: 4 (lower is better)
Translates to: KIENVGLELHPASCTAGPLQELL*LDKPSS
Trigger: GCTTGAAGGTTTGTCCAGGCAGAGCAGCTCCTGCAG...TGGCCCCGCGGTGCATGAGGCTGGGTGCAGTTCTAAACCTACATTCTCGATTTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000229328.10
ENST00000540121.5
ENST00000541640.5
CDS-3UTR GCA 90 bp ACCGAGGCGCTGCAGGAGCTGCTCTGCCTGGACAAACCTTCAAGCAGGACCAGGAGAGCCAGCCACCTCTaGTTACAAAAAGAGTACTTA +
Preference number: 4 (lower is better)
Translates to: TEALQELLCLDKPSSRTRRASHL*LQKEYL
Trigger: TAAGTACTCTTTTTGTAAGCAGAGGTGGCTGGCTCT...CCTGGTCCTGCTTGAAGGTTTGTCCAGGCAGAGCAGCTCCTGCAGCGCCTCGGT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000229328.10
ENST00000541640.5
CDS-3UTR GCA 90 bp GGCAAGACCAACACTGTATTTAGTTCCATAGCCAGGCCTCAACAGGGACAAGTGAGTGCCCCGAGATTGTaGTACTGCCCTCCAGCCTGG +
Preference number: 4 (lower is better)
Translates to: GKTNTVFSSIARPQQGQVSAPRL*YCPPAW
Trigger: CCAGGCTGGAGGGCAGTAGCACAATCTCGGGGCACT...CACTTGTCCCTGTTGAGGCCTGGCTATGGAACTAAATACAGTGTTGGTCTTGCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000540121.5
CDS-3UTR GCA 90 bp ATGGGGGCGGTTTCCCCATGCTGTTCTCTGACAGTGAGTGAGTCTCATGAGATCGGGGCGGTTTCCCCATaGTGTTCTCTGACAGTGAGT +
Preference number: 4 (lower is better)
Translates to: MGAVSPCCSLTVSESHEIGAVSP*CSLTVS
Trigger: ACTCACTGTCAGAGAACAGCATGGGGAAACCGCCCC...GATCTCATGAGACTCACTCACTGTCAGAGAACAGCATGGGGAAACCGCCCCCAT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENST00000537400.1
CDS-3UTR CCA 90 bp ACACCGTTGGCCGAGCCTGGGCGGGAGCTTTATCATTCACTTCCAGATCATGCTTTGATTTCCTCGGAGTaGAAGAGGTCGGCGTCTTCG +
Preference number: 4 (lower is better)
Translates to: TPLAEPGRELYHSLPDHALISSE*KRSASS
Trigger: CGAAGACGCCGACCTCTTCCACTCCGAGGAAATCAA...AGCATGATCTGGAAGTGAATGATAAAGCTCCCGCCCAGGCTCGGCCAACGGTGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000537400.1
CDS-3UTR CCA 90 bp AACTCAGGTATACCAAGTAAATACTGGAACCCAGGGAGCTCACTCCTCCCTCTCGCTGGCTGGTTACTATaGGCTCGGAAGGGTCGTGCG +
Preference number: 4 (lower is better)
Translates to: NSGIPSKYWNPGSSLLPLAGWLL*ARKGRA
Trigger: CGCACGACCCTTCCGAGCCCATAGTAACCAGCCAGC...GAGAGGGAGGAGTGAGCTCCCTGGGTTCCAGTATTTACTTGGTATACCTGAGTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000229328.10
ENST00000541640.5
CDS-3UTR CCA 90 bp GAGCAATGTACAGTCCATTCCCTCTTGGGGAAAGCATGCACGTGTGGAGCCTGGTTCTTCTTGTACCGGTaGGTTGCGCTGAGCACCATC +
Preference number: 4 (lower is better)
Translates to: EQCTVHSLLGKACTCGAWFFLYR*VALSTI
Trigger: GATGGTGCTCAGCGCAACCCACCGGTACAAGAAGAA...CCAGGCTCCACACGTGCATGCTTTCCCCAAGAGGGAATGGACTGTACATTGCTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000229328.10
ENST00000540121.5
ENST00000541640.5
CDS-3UTR CCA 90 bp ATCGAGAATGTAGGTTTAGAACTGCACCCAGCCTCATGCACCGCGGGGCCAGGGCCCCAGCTCTTCATATaGGCTTGTATAACAAGGTGG +
Preference number: 4 (lower is better)
Translates to: IENVGLELHPASCTAGPGPQLFI*ACITRW
Trigger: CCACCTTGTTATACAAGCCCATATGAAGAGCTGGGG...CCCTGGCCCCGCGGTGCATGAGGCTGGGTGCAGTTCTAAACCTACATTCTCGAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000229328.10
ENST00000540121.5
ENST00000541640.5
CDS-3UTR CCA 90 bp ACTGTCACAGACCGAGGCGCTGCAGGAGCTGCTCTGCCTGGACAAACCTTCAAGCTCAACAGGGACAAGTaGCTGGCCTTAAAAACACAC +
Preference number: 4 (lower is better)
Translates to: TVTDRGAAGAALPGQTFKLNRDK*LALKTH
Trigger: GTGTGTTTTTAAGGCCAGCCACTTGTCCCTGTTGAG...CTTGAAGGTTTGTCCAGGCAGAGCAGCTCCTGCAGCGCCTCGGTCTGTGACAGT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000229328.10
ENST00000540121.5
ENST00000541640.5
CDS-3UTR CCA 90 bp CGCTGCAGGAGCTGCTCTGCCTGGACAAACCTTCAAGCAGGACCAGGGCAGGTAATACCAAGTAAATACTaGAACCCAGGGAGCTCACTC +
Preference number: 4 (lower is better)
Translates to: RCRSCSAWTNLQAGPGQVIPSKY*NPGSSL
Trigger: GAGTGAGCTCCCTGGGTTCCAGTATTTACTTGGTAT...TACCTGCCCTGGTCCTGCTTGAAGGTTTGTCCAGGCAGAGCAGCTCCTGCAGCG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000229328.10
ENST00000541640.5
CDS-3UTR CCA 90 bp CGGGAGCTTTATCATTCACTTCCAGATCATGCTGCCAGGCCAGGAATTCCTCCTAAGGGCAGGACCAGGTaGAGGTATCGATCATGGGGG +
Preference number: 4 (lower is better)
Translates to: RELYHSLPDHAARPGIPPKGRTR*RYRSWG
Trigger: CCCCCATGATCGATACCTCCACCTGGTCCTGCCCTT...AGGAGGAATTCCTGGCCTGGCAGCATGATCTGGAAGTGAATGATAAAGCTCCCG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000537400.1
CDS-3UTR TCA 90 bp AGCTTTATCATTCACTTCCAGATCATGCTGCCAGGCCAGGAATTCCTCCTTCTCTGCTGGTATTGCCCATaGTGGGGGTCTGCGGGGACA +
Preference number: 4 (lower is better)
Translates to: SFIIHFQIMLPGQEFLLLCWYCP*WGSAGT
Trigger: TGTCCCCGCAGACCCCCATCATGGGCAATACCAGCA...GAGAAGGAGGAATTCCTGGCCTGGCAGCATGATCTGGAAGTGAATGATAAAGCT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000537400.1
CDS-3UTR TCA 90 bp GTGTGGCCTCAGTCCCTGTTTCCCAGAATTTTACTGGCAAAGGAGTTAGCATTCACCGGTGGGTTGCGCTaGGCACCATCACTCCATCCT +
Preference number: 4 (lower is better)
Translates to: VWPQSLFPRILLAKELAFTGGLR*APSLHP
Trigger: AGGATGGAGTGATGGTGCTCAGCGCAACCCACCGGT...GAATGCTAACTCCTTTGCCAGTAAAATTCTGGGAAACAGGGACTGAGGCCACAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000229328.10
ENST00000540121.5
ENST00000541640.5
CDS-3UTR TCA 90 bp CGCTGCAGGAGCTGCTCTGCCTGGACAAACCTTCAAGCAGGACCAGGGCAGGTATGTATAACAAGGTGGTaGCGTACTTCTTCTTGTACC +
Preference number: 4 (lower is better)
Translates to: RCRSCSAWTNLQAGPGQVCITRW*RTSSCT
Trigger: GGTACAAGAAGAAGTACGTCACCACCTTGTTATACA...TACCTGCCCTGGTCCTGCTTGAAGGTTTGTCCAGGCAGAGCAGCTCCTGCAGCG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000229328.10
ENST00000540121.5
ENST00000541640.5
CDS-3UTR GCA 90 bp TTTGGCTTAAGAAAAATCGAGAATGTAGGTTTAGAACTGCACCCAGCCTCATGCTGTCCCCGTCCTTGGTaGCCCCCGAGCTGTCCCTCC +
Preference number: 4 (lower is better)
Translates to: FGLRKIENVGLELHPASCCPRPW*PPSCPS
Trigger: GGAGGGACAGCTCGGGGGGCACCAAGGACGGGGACA...GCATGAGGCTGGGTGCAGTTCTAAACCTACATTCTCGATTTTTCTTAAGCCAAA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENST00000229328.10
ENST00000541640.5
CDS-3UTR GCA 90 bp GACAAACCTTCAAGCAGGACCAGGGCAGGTATGAAATGTCTTCTGAAGAGTGTGTGGAGCCTGGTGGTGTaGTGTCTCCTGGGCCACCAT +
Preference number: 4 (lower is better)
Translates to: DKPSSRTRAGMKCLLKSVWSLVV*CLLGHH
Trigger: ATGGTGGCCCAGGAGACAGCACACCACCAGGCTCCA...CACACTCTTCAGAAGACATTTCATACCTGCCCTGGTCCTGCTTGAAGGTTTGTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000229328.10
ENST00000540121.5
ENST00000541640.5
CDS-3UTR CCA 90 bp AAAATCGAGAATGTAGGTTTAGAACTGCACCCAGCCTCATGCACCGCGGGGCCATTGATTTCCTCGGAGTaGAAGAGGTCGGCGTCTTCG +
Preference number: 4 (lower is better)
Translates to: KIENVGLELHPASCTAGPLISSE*KRSASS
Trigger: CGAAGACGCCGACCTCTTCCACTCCGAGGAAATCAA...TGGCCCCGCGGTGCATGAGGCTGGGTGCAGTTCTAAACCTACATTCTCGATTTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000229328.10
ENST00000541640.5
CDS-3UTR CCA 90 bp TACCCCCAAACTCAGGTATACCAAGTAAATACTGGAACCCAGGGAGCTCACTCCACCGTTGGCCGAGCCTaGGCGGGAGCTTTATCATTC +
Preference number: 4 (lower is better)
Translates to: YPQTQVYQVNTGTQGAHSTVGRA*AGALSF
Trigger: GAATGATAAAGCTCCCGCCCAGGCTCGGCCAACGGT...GGAGTGAGCTCCCTGGGTTCCAGTATTTACTTGGTATACCTGAGTTTGGGGGTA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000229328.10
ENST00000541640.5
CDS-3UTR CCA 90 bp GGACAAACCTTCAAGCAGGACCAGGGCAGGTATGAAATGTCTTCTGAAGAGTGTGCTGGCTGGTTACTATaGGCTCGGAAGGGTCGTGCG +
Preference number: 4 (lower is better)
Translates to: GQTFKQDQGRYEMSSEECAGWLL*ARKGRA
Trigger: CGCACGACCCTTCCGAGCCCATAGTAACCAGCCAGC...ACACTCTTCAGAAGACATTTCATACCTGCCCTGGTCCTGCTTGAAGGTTTGTCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000229328.10
ENST00000540121.5
ENST00000541640.5
CDS-3UTR CCA 90 bp TACCCCCAAACTCAGGTATACCAAGTAAATACTGGAACCCAGGGAGCTCACTCCGTCCTGGGGGAGAACTaGACAGCTCAGACACATCGG +
Preference number: 4 (lower is better)
Translates to: YPQTQVYQVNTGTQGAHSVLGEN*TAQTHR
Trigger: CCGATGTGTCTGAGCTGTCCAGTTCTCCCCCAGGAC...GGAGTGAGCTCCCTGGGTTCCAGTATTTACTTGGTATACCTGAGTTTGGGGGTA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000229328.10
ENST00000541640.5
3UTR CAA 72 bp TGCTGCCAGGCCAGGAATTCCTCCTTCTCTGGTGCCTaGAATTGTAATCCCCATAATCCCCACGTGTCAAGG +
Preference number: 4 (lower is better)
Translates to: CCQARNSSFSGA*NCNPHNPHVSR
Trigger: CCTTGACACGTGGGGATTATGGGGATTACAATTCAAGGCACCAGAGAAGGAGGAATTCCTGGCCTGGCAGCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000537400.1
CDS-3UTR TCA 90 bp CCTGGACAAACCTTCAAGCAGGACCAGGGCAGGTATGAAATGTCTTCTGAAGAGTGTCCTTGTTCAGGATaGCCTGGAGGAGATGTGGGG +
Preference number: 4 (lower is better)
Translates to: PGQTFKQDQGRYEMSSEECPCSG*PGGDVG
Trigger: CCCCACATCTCCTCCAGGTCATCCTGAACAAGGACA...CTCTTCAGAAGACATTTCATACCTGCCCTGGTCCTGCTTGAAGGTTTGTCCAGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000229328.10
ENST00000540121.5
ENST00000541640.5
CDS-3UTR GCA 90 bp GGCAAGACCAACACTGTATTTAGTTCCATAGCCAGGCCTCAACAGGGACAAGTGAGCGCTCTTCGGGTTTaGAGACGTAGGGCTCCTGAT +
Preference number: 4 (lower is better)
Translates to: GKTNTVFSSIARPQQGQVSALRV*RRRAPD
Trigger: ATCAGGAGCCCTACGTCTGCAAACCCGAAGAGCGCT...CACTTGTCCCTGTTGAGGCCTGGCTATGGAACTAAATACAGTGTTGGTCTTGCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000229328.10
ENST00000540121.5
ENST00000541640.5
CDS-3UTR GCA 90 bp GACAAACCTTCAAGCAGGACCAGGGCAGGTATGAAATGTCTTCTGAAGAGTGTGCTTGTACCGGTGGGTTaGGCTGAGCACCATCACTCC +
Preference number: 4 (lower is better)
Translates to: DKPSSRTRAGMKCLLKSVLVPVG*AEHHHS
Trigger: GGAGTGATGGTGCTCAGCGCAACCCACCGGTACAAG...CACACTCTTCAGAAGACATTTCATACCTGCCCTGGTCCTGCTTGAAGGTTTGTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000229328.10
ENST00000540121.5
ENST00000541640.5
CDS-3UTR GCA 90 bp CCTGGACAAACCTTCAAGCAGGACCAGGGCAGGTATGAAATGTCTTCTGAAGAGCTGCAGGAGCTGCTCTaGCTGGACAAACCTTCAAGC +
Preference number: 4 (lower is better)
Translates to: PGQTFKQDQGRYEMSSEELQELL*LDKPSS
Trigger: GCTTGAAGGTTTGTCCAGGCAGAGCAGCTCCTGCAG...CTCTTCAGAAGACATTTCATACCTGCCCTGGTCCTGCTTGAAGGTTTGTCCAGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000229328.10
ENST00000540121.5
ENST00000541640.5
CDS-3UTR CCA 90 bp CTGCCTGGACAAACCTTCAAGCAGGACCAGGGCAGGTATGAAATGTCTTCTGAACTGTGCCAAGCTGGCTaGTTACTATGGGCTCGGAAG +
Preference number: 4 (lower is better)
Translates to: LPGQTFKQDQGRYEMSSELCQAG*LLWARK
Trigger: CTTCCGAGCCCATAGTAACCAGCCAGCTTGGCACAG...TTCAGAAGACATTTCATACCTGCCCTGGTCCTGCTTGAAGGTTTGTCCAGGCAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000229328.10
ENST00000540121.5
ENST00000541640.5
CDS-3UTR CCA 90 bp TTTCTTGGACTTGATGAGTCCCCGAGGCTCAAAGCCATGGGGGTGCTAGGAGGACCCCAGCTCTTCATATaGGCTTGTATAACAAGGTGG +
Preference number: 4 (lower is better)
Translates to: FLGLDESPRLKAMGVLGGPQLFI*ACITRW
Trigger: CCACCTTGTTATACAAGCCCATATGAAGAGCTGGGG...TCCTCCTAGCACCCCCATGGCTTTGAGCCTCGGGGACTCATCAAGTCCAAGAAA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENST00000229328.10
ENST00000540121.5
ENST00000541640.5
CDS-3UTR TCA 90 bp CCTGGACAAACCTTCAAGCAGGACCAGGGCAGGTATGAAATGTCTTCTGAAGAGCCTTCTCTGGTGCCTTaGTTTCCTCGGAGTGGAAGA +
Preference number: 4 (lower is better)
Translates to: PGQTFKQDQGRYEMSSEEPSLVP*FPRSGR
Trigger: TCTTCCACTCCGAGGAAATCAAGGCACCAGAGAAGG...CTCTTCAGAAGACATTTCATACCTGCCCTGGTCCTGCTTGAAGGTTTGTCCAGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000229328.10
ENST00000541640.5
CDS-3UTR TCA 90 bp CAAGTGGCTGGCCTTAAAAACACACAGATGACTGGAAATGATGTGTGGCCTCAGGGGTCGTGCGTCCACTaGCCATCCACAAAGAACTTG +
Preference number: 4 (lower is better)
Translates to: QVAGLKNTQMTGNDVWPQGSCVH*PSTKNL
Trigger: CAAGTTCTTTGTGGATGGTCAGTGGACGCACGACCC...CTGAGGCCACACATCATTTCCAGTCATCTGTGTGTTTTTAAGGCCAGCCACTTG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000229328.10
ENST00000540121.5
ENST00000541640.5
CDS-3UTR GCA 90 bp ACTTCCAGATCATGCTGCCAGGCCAGGAATTCCTCCTTCTCTGGTGCCTTGAATTTCACTTCCAGATCATaGTGCCAGGCCAGGAATTCC +
Preference number: 4 (lower is better)
Translates to: TSRSCCQARNSSFSGALNFTSRS*CQARNS
Trigger: GGAATTCCTGGCCTGGCAGCATGATCTGGAAGTGAA...ATTCAAGGCACCAGAGAAGGAGGAATTCCTGGCCTGGCAGCATGATCTGGAAGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000537400.1
CDS-3UTR GCA 90 bp GGACAAACCTTCAAGCAGGACCAGGGCAGGTATGAAATGTCTTCTGAAGAGTGTAGCGCTCTTCGGGTTTaGAGACGTAGGGCTCCTGAT +
Preference number: 4 (lower is better)
Translates to: GQTFKQDQGRYEMSSEECSALRV*RRRAPD
Trigger: ATCAGGAGCCCTACGTCTGCAAACCCGAAGAGCGCT...ACACTCTTCAGAAGACATTTCATACCTGCCCTGGTCCTGCTTGAAGGTTTGTCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000229328.10
ENST00000540121.5
ENST00000541640.5
CDS-3UTR CCA 90 bp GGCAAGACCAACACTGTATTTAGTTCCATAGCCAGGCCTCAACAGGGACAAGTGAGGAGCTGCTCTGCCTaGACAAACCTTCAAGCAGGA +
Preference number: 4 (lower is better)
Translates to: GKTNTVFSSIARPQQGQVRSCSA*TNLQAG
Trigger: TCCTGCTTGAAGGTTTGTCCAGGCAGAGCAGCTCCT...CACTTGTCCCTGTTGAGGCCTGGCTATGGAACTAAATACAGTGTTGGTCTTGCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000229328.10
ENST00000540121.5
ENST00000541640.5
CDS-3UTR CCA 90 bp CCTGGACAAACCTTCAAGCAGGACCAGGGCAGGTATGAAATGTCTTCTGAAGAGCCTGAGGTCAGGAGATaGAGACCATCCTGGCTAACA +
Preference number: 4 (lower is better)
Translates to: PGQTFKQDQGRYEMSSEEPEVRR*RPSWLT
Trigger: TGTTAGCCAGGATGGTCTCCATCTCCTGACCTCAGG...CTCTTCAGAAGACATTTCATACCTGCCCTGGTCCTGCTTGAAGGTTTGTCCAGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000540121.5
CDS-3UTR CCA 90 bp ACACCGTTGGCCGAGCCTGGGCGGGAGCTTTATCATTCACTTCCAGATCATGCTGGTTTTATAAGCATCTaGCATTTCCCCTGCTTGCTC +
Preference number: 4 (lower is better)
Translates to: TPLAEPGRELYHSLPDHAGFISI*HFPCLL
Trigger: GAGCAAGCAGGGGAAATGCCAGATGCTTATAAAACC...AGCATGATCTGGAAGTGAATGATAAAGCTCCCGCCCAGGCTCGGCCAACGGTGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000537400.1
CDS-3UTR TCA 90 bp GTGGCCTCAGTCCCTGTTTCCCAGAATTTTACTGGCAAAGGAGTTAGCATTCATGGGTCGTGCGTCCACTaGCCATCCACAAAGAACTTG +
Preference number: 4 (lower is better)
Translates to: VASVPVSQNFTGKGVSIHGSCVH*PSTKNL
Trigger: CAAGTTCTTTGTGGATGGTCAGTGGACGCACGACCC...ATGAATGCTAACTCCTTTGCCAGTAAAATTCTGGGAAACAGGGACTGAGGCCAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000229328.10
ENST00000540121.5
ENST00000541640.5
CDS-3UTR TCA 90 bp CAAGTGGCTGGCCTTAAAAACACACAGATGACTGGAAATGATGTGTGGCCTCAGCAAAGGACATCTTCCTaGCCCAGACTCAGAAGGCTG +
Preference number: 4 (lower is better)
Translates to: QVAGLKNTQMTGNDVWPQQRTSS*PRLRRL
Trigger: CAGCCTTCTGAGTCTGGGTCAGGAAGATGTCCTTTG...CTGAGGCCACACATCATTTCCAGTCATCTGTGTGTTTTTAAGGCCAGCCACTTG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000229328.10
ENST00000541640.5
CDS-3UTR TCA 90 bp CTTTATCATTCACTTCCAGATCATGCTGCCAGGCCAGGAATTCCTCCTTCTCTGCTCTTCTGCCGTCCTTaGTTTCCTCGGAGTGGAAGA +
Preference number: 4 (lower is better)
Translates to: LYHSLPDHAARPGIPPSLLFCRP*FPRSGR
Trigger: TCTTCCACTCCGAGGAAATCAAGGACGGCAGAAGAG...CAGAGAAGGAGGAATTCCTGGCCTGGCAGCATGATCTGGAAGTGAATGATAAAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000537400.1
CDS-3UTR GCA 90 bp GCTTTATCATTCACTTCCAGATCATGCTGCCAGGCCAGGAATTCCTCCTTCTCTACTTCCAGATCATGCTaGCAGGCCAGGAATTCCTCC +
Preference number: 4 (lower is better)
Translates to: ALSFTSRSCCQARNSSFSTSRSC*QARNSS
Trigger: GGAGGAATTCCTGGCCTGGCAGCATGATCTGGAAGT...AGAGAAGGAGGAATTCCTGGCCTGGCAGCATGATCTGGAAGTGAATGATAAAGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000537400.1
CDS-3UTR GCA 90 bp CTGCCTGGACAAACCTTCAAGCAGGACCAGGGCAGGTATGAAATGTCTTCTGAATTCACTTCCAGATCATaGTGCCAGGCCAGGAATTCC +
Preference number: 4 (lower is better)
Translates to: LPGQTFKQDQGRYEMSSEFTSRS*CQARNS
Trigger: GGAATTCCTGGCCTGGCAGCATGATCTGGAAGTGAA...TTCAGAAGACATTTCATACCTGCCCTGGTCCTGCTTGAAGGTTTGTCCAGGCAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000229328.10
ENST00000540121.5
ENST00000541640.5
CDS-3UTR GCA 90 bp GGCAAGACCAACACTGTATTTAGTTCCATAGCCAGGCCTCAACAGGGACAAGTGTTCACTTCCAGATCATaGTGCCAGGCCAGGAATTCC +
Preference number: 4 (lower is better)
Translates to: GKTNTVFSSIARPQQGQVFTSRS*CQARNS
Trigger: GGAATTCCTGGCCTGGCAGCATGATCTGGAAGTGAA...CACTTGTCCCTGTTGAGGCCTGGCTATGGAACTAAATACAGTGTTGGTCTTGCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000229328.10
ENST00000540121.5
ENST00000541640.5
CDS-3UTR CCA 90 bp GAGGTCCTGAGCAAGGTGCCACGGGACCTTGTAAAATCACGCTGTGTGATTTTACTCAGGAAGCAAAGCTaGATCACAGGAAATCCCCGT +
Preference number: 4 (lower is better)
Translates to: EVLSKVPRDLVKSRCVILLRKQS*ITGNPR
Trigger: ACGGGGATTTCCTGTGATCCAGCTTTGCTTCCTGAG...TAAAATCACACAGCGTGATTTTACAAGGTCCCGTGGCACCTTGCTCAGGACCTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000229328.10
ENST00000541640.5
CDS-3UTR CCA 90 bp GACAAACCTTCAAGCAGGACCAGGGCAGGTATGAAATGTCTTCTGAAGAGTGTGTTCTTCTTGTACCGGTaGGTTGCGCTGAGCACCATC +
Preference number: 4 (lower is better)
Translates to: DKPSSRTRAGMKCLLKSVFFLYR*VALSTI
Trigger: GATGGTGCTCAGCGCAACCCACCGGTACAAGAAGAA...CACACTCTTCAGAAGACATTTCATACCTGCCCTGGTCCTGCTTGAAGGTTTGTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000229328.10
ENST00000540121.5
ENST00000541640.5
CDS-3UTR CCA 90 bp CAAGTGGCTGGCCTTAAAAACACACAGATGACTGGAAATGATGTGTGGCCTCAGCAGTCCATTCCCTCTTaGGGAAAGCATGCACGTGTG +
Preference number: 4 (lower is better)
Translates to: QVAGLKNTQMTGNDVWPQQSIPS*GKHARV
Trigger: CACACGTGCATGCTTTCCCCAAGAGGGAATGGACTG...CTGAGGCCACACATCATTTCCAGTCATCTGTGTGTTTTTAAGGCCAGCCACTTG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000229328.10
ENST00000540121.5
ENST00000541640.5
CDS-3UTR CCA 90 bp GGACAAACCTTCAAGCAGGACCAGGGCAGGTATGAAATGTCTTCTGAAGAGTGTAGGAGCTGCTCTGCCTaGACAAACCTTCAAGCAGGA +
Preference number: 4 (lower is better)
Translates to: GQTFKQDQGRYEMSSEECRSCSA*TNLQAG
Trigger: TCCTGCTTGAAGGTTTGTCCAGGCAGAGCAGCTCCT...ACACTCTTCAGAAGACATTTCATACCTGCCCTGGTCCTGCTTGAAGGTTTGTCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000229328.10
ENST00000540121.5
ENST00000541640.5
CDS-3UTR CCA 90 bp GAGGTCCTGAGCAAGGTGCCACGGGACCTTGTAAAATCACGCTGTGTGATTTTAGAAATGACACCTCCCTaGAGCCGAGAGACAATCTGT +
Preference number: 4 (lower is better)
Translates to: EVLSKVPRDLVKSRCVILEMTPP*SRETIC
Trigger: ACAGATTGTCTCTCGGCTCCAGGGAGGTGTCATTTC...TAAAATCACACAGCGTGATTTTACAAGGTCCCGTGGCACCTTGCTCAGGACCTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000229328.10
ENST00000541640.5
CDS-3UTR CCA 90 bp AAAATCGAGAATGTAGGTTTAGAACTGCACCCAGCCTCATGCACCGCGGGGCCAATACCAAGTAAATACTaGAACCCAGGGAGCTCACTC +
Preference number: 4 (lower is better)
Translates to: KIENVGLELHPASCTAGPIPSKY*NPGSSL
Trigger: GAGTGAGCTCCCTGGGTTCCAGTATTTACTTGGTAT...TGGCCCCGCGGTGCATGAGGCTGGGTGCAGTTCTAAACCTACATTCTCGATTTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000229328.10
ENST00000541640.5
CDS-3UTR TCA 90 bp AACTCAGGTATACCAAGTAAATACTGGAACCCAGGGAGCTCACTCCTCCCTCTCTATTGTGGCTTCTGGTaGGGGGAAGTTTACTCCAGT +
Preference number: 4 (lower is better)
Translates to: NSGIPSKYWNPGSSLLPLYCGFW*GEVYSS
Trigger: ACTGGAGTAAACTTCCCCTCACCAGAAGCCACAATA...GAGAGGGAGGAGTGAGCTCCCTGGGTTCCAGTATTTACTTGGTATACCTGAGTT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000229328.10
ENST00000541640.5
CDS-3UTR TCA 90 bp GTGGCCTCAGTCCCTGTTTCCCAGAATTTTACTGGCAAAGGAGTTAGCATTCATCAAAGGACATCTTCCTaGCCCAGACTCAGAAGGCTG +
Preference number: 4 (lower is better)
Translates to: VASVPVSQNFTGKGVSIHQRTSS*PRLRRL
Trigger: CAGCCTTCTGAGTCTGGGTCAGGAAGATGTCCTTTG...ATGAATGCTAACTCCTTTGCCAGTAAAATTCTGGGAAACAGGGACTGAGGCCAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000229328.10
ENST00000541640.5
CDS-3UTR GCA 90 bp TTTGGCTTAAGAAAAATCGAGAATGTAGGTTTAGAACTGCACCCAGCCTCATGCAGGCGCTGCAGGAGCTaGTCTGCCTGGACAAACCTT +
Preference number: 4 (lower is better)
Translates to: FGLRKIENVGLELHPASCRRCRS*SAWTNL
Trigger: AAGGTTTGTCCAGGCAGAGCAGCTCCTGCAGCGCCT...GCATGAGGCTGGGTGCAGTTCTAAACCTACATTCTCGATTTTTCTTAAGCCAAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000229328.10
ENST00000540121.5
ENST00000541640.5
CDS-3UTR CCA 90 bp CCTGGACAAACCTTCAAGCAGGACCAGGGCAGGTATGAAATGTCTTCTGAAGAGGAATTCCTCCTTCTCTaGTGCCTTGATTTCCTCGGA +
Preference number: 4 (lower is better)
Translates to: PGQTFKQDQGRYEMSSEEEFLLL*CLDFLG
Trigger: TCCGAGGAAATCAAGGCACCAGAGAAGGAGGAATTC...CTCTTCAGAAGACATTTCATACCTGCCCTGGTCCTGCTTGAAGGTTTGTCCAGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000229328.10
ENST00000541640.5
CDS-3UTR CCA 90 bp TTTGGCTTAAGAAAAATCGAGAATGTAGGTTTAGAACTGCACCCAGCCTCATGCGTCCTGGGGGAGAACTaGACAGCTCAGACACATCGG +
Preference number: 4 (lower is better)
Translates to: FGLRKIENVGLELHPASCVLGEN*TAQTHR
Trigger: CCGATGTGTCTGAGCTGTCCAGTTCTCCCCCAGGAC...GCATGAGGCTGGGTGCAGTTCTAAACCTACATTCTCGATTTTTCTTAAGCCAAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENST00000229328.10
ENST00000540121.5
ENST00000541640.5
CDS-3UTR CCA 90 bp GACAAACCTTCAAGCAGGACCAGGGCAGGTATGAAATGTCTTCTGAAGAGTGTGCTCAGGAAGCAAAGCTaGATCACAGGAAATCCCCGT +
Preference number: 4 (lower is better)
Translates to: DKPSSRTRAGMKCLLKSVLRKQS*ITGNPR
Trigger: ACGGGGATTTCCTGTGATCCAGCTTTGCTTCCTGAG...CACACTCTTCAGAAGACATTTCATACCTGCCCTGGTCCTGCTTGAAGGTTTGTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000229328.10
ENST00000540121.5
ENST00000541640.5
CDS-3UTR CCA 90 bp CAAGTGGCTGGCCTTAAAAACACACAGATGACTGGAAATGATGTGTGGCCTCAGGATCATCCAGCTGAATaGAGAAATCCGGCAGCAGGT +
Preference number: 4 (lower is better)
Translates to: QVAGLKNTQMTGNDVWPQDHPAE*RNPAAG
Trigger: ACCTGCTGCCGGATTTCTCCATTCAGCTGGATGATC...CTGAGGCCACACATCATTTCCAGTCATCTGTGTGTTTTTAAGGCCAGCCACTTG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000229328.10
ENST00000541640.5
CDS-3UTR GCA 90 bp TTTGGCTTAAGAAAAATCGAGAATGTAGGTTTAGAACTGCACCCAGCCTCATGCACTTCCAGATCATGCTaGCAGGCCAGGAATTCCTCC +
Preference number: 4 (lower is better)
Translates to: FGLRKIENVGLELHPASCTSRSC*QARNSS
Trigger: GGAGGAATTCCTGGCCTGGCAGCATGATCTGGAAGT...GCATGAGGCTGGGTGCAGTTCTAAACCTACATTCTCGATTTTTCTTAAGCCAAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000229328.10
ENST00000540121.5
ENST00000541640.5
CDS-3UTR GCA 90 bp CCTGGACAAACCTTCAAGCAGGACCAGGGCAGGTATGAAATGTCTTCTGAAGAGAGAGCCAGCCACCTCTaGTTACAAAAAGAGTACTTA +
Preference number: 4 (lower is better)
Translates to: PGQTFKQDQGRYEMSSEERASHL*LQKEYL
Trigger: TAAGTACTCTTTTTGTAAGCAGAGGTGGCTGGCTCT...CTCTTCAGAAGACATTTCATACCTGCCCTGGTCCTGCTTGAAGGTTTGTCCAGG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000229328.10
ENST00000541640.5
CDS-3UTR CCA 90 bp CCTGGACAAACCTTCAAGCAGGACCAGGGCAGGTATGAAATGTCTTCTGAAGAGACATCGGAGCACTTTTaGGAATCCACCATTAAAGCA +
Preference number: 4 (lower is better)
Translates to: PGQTFKQDQGRYEMSSEETSEHF*ESTIKA
Trigger: TGCTTTAATGGTGGATTCCCAAAAGTGCTCCGATGT...CTCTTCAGAAGACATTTCATACCTGCCCTGGTCCTGCTTGAAGGTTTGTCCAGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000229328.10
ENST00000540121.5
ENST00000541640.5
CDS-3UTR CCA 90 bp CAATCTGTTGTTGATTTTGAAGGACAGGCAAGACCAACACTGTATTTAGTTCCACTGATGGTAGGGTCCTaGGGGAGAACTGGACAGCTC +
Preference number: 4 (lower is better)
Translates to: QSVVDFEGQARPTLYLVPLMVGS*GRTGQL
Trigger: GAGCTGTCCAGTTCTCCCCCAGGACCCTACCATCAG...TGGAACTAAATACAGTGTTGGTCTTGCCTGTCCTTCAAAATCAACAACAGATTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000229328.10
ENST00000540121.5
ENST00000541640.5
CDS-3UTR CCA 90 bp TTTGGCTTAAGAAAAATCGAGAATGTAGGTTTAGAACTGCACCCAGCCTCATGCCAGTCCATTCCCTCTTaGGGAAAGCATGCACGTGTG +
Preference number: 4 (lower is better)
Translates to: FGLRKIENVGLELHPASCQSIPS*GKHARV
Trigger: CACACGTGCATGCTTTCCCCAAGAGGGAATGGACTG...GCATGAGGCTGGGTGCAGTTCTAAACCTACATTCTCGATTTTTCTTAAGCCAAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000229328.10
ENST00000540121.5
ENST00000541640.5
3UTR CAA 72 bp AGAAATGACACCTCCCTGGAGCCGAGAGACAATCTGTaGTTGATTTTGAAGGACAGGCAAGACCAACACTGT +
Preference number: 4 (lower is better)
Translates to: RNDTSLEPRDNL*LILKDRQDQHC
Trigger: ACAGTGTTGGTCTTGCCTGTCCTTCAAAATCAACAACAGATTGTCTCTCGGCTCCAGGGAGGTGTCATTTCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000229328.10
ENST00000541640.5
CDS-3UTR CCA 90 bp GGACAAACCTTCAAGCAGGACCAGGGCAGGTATGAAATGTCTTCTGAAGAGTGTACATCGGAGCACTTTTaGGAATCCACCATTAAAGCA +
Preference number: 4 (lower is better)
Translates to: GQTFKQDQGRYEMSSEECTSEHF*ESTIKA
Trigger: TGCTTTAATGGTGGATTCCCAAAAGTGCTCCGATGT...ACACTCTTCAGAAGACATTTCATACCTGCCCTGGTCCTGCTTGAAGGTTTGTCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000229328.10
ENST00000540121.5
ENST00000541640.5
CDS-3UTR TCA 90 bp CTTTATCATTCACTTCCAGATCATGCTGCCAGGCCAGGAATTCCTCCTTCTCTGGAGTCTCATGAGATCTaGTGGTTTTATAAGCATCTG +
Preference number: 4 (lower is better)
Translates to: LYHSLPDHAARPGIPPSLESHEI*WFYKHL
Trigger: CAGATGCTTATAAAACCATCAGATCTCATGAGACTC...CAGAGAAGGAGGAATTCCTGGCCTGGCAGCATGATCTGGAAGTGAATGATAAAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000537400.1
CDS-3UTR CCA 90 bp TTTGGCTTAAGAAAAATCGAGAATGTAGGTTTAGAACTGCACCCAGCCTCATGCCTCAACAGGGACAAGTaGCTGGCCTTAAAAACACAC +
Preference number: 4 (lower is better)
Translates to: FGLRKIENVGLELHPASCLNRDK*LALKTH
Trigger: GTGTGTTTTTAAGGCCAGCCACTTGTCCCTGTTGAG...GCATGAGGCTGGGTGCAGTTCTAAACCTACATTCTCGATTTTTCTTAAGCCAAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENST00000229328.10
ENST00000540121.5
ENST00000541640.5
CDS TCA 90 bp CACCATGCCGCTCCAGCGCGGCGCGCTCACTGCTGGTATTGCCCATaGTGGGGGTCTGCGGGGACACAGGGAAGGCGGACGGCGCCTCAC +
Preference number: 5 (lower is better)
Translates to: HHAAPARRAHCWYCP*WGSAGTQGRRTAPH
Trigger: GTGAGGCGCCGTCCGCCTTCCCTGTGTCCCCGCAGACCCCCATCATGGGCAATACCAGCAGTGAGCGCGCCGCGCTGGAGCGGCATGGTG
70% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000229328.10
ENST00000537400.1
ENST00000630317.1
CDS-3UTR CAA 90 bp CTGCACCCAGCCTCATGCACCGCGGGGCCAGGGCTGCAGATCCTCTGCCACCCCTCCATCGAAACACCGTaGGCCGAGCCTGGGCGGGAG +
Preference number: 5 (lower is better)
Translates to: LHPASCTAGPGLQILCHPSIETP*AEPGRE
Trigger: CTCCCGCCCAGGCTCGGCCAACGGTGTTTCGATGGA...GGGGTGGCAGAGGATCTGCAGCCCTGGCCCCGCGGTGCATGAGGCTGGGTGCAG
70% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000229328.10
ENST00000540121.5
ENST00000541640.5
CDS TCA 90 bp GGACACAGGGAAGGCGGACGGCGCCTCACTGCAGGAAAGGGACCCTaGGCAAGGGACTCCCGGAACCGCGGGTCCCAAGGAGCCTGCGGA +
Preference number: 5 (lower is better)
Translates to: GHREGGRRLTAGKGP*ARDSRNRGSQGACG
Trigger: TCCGCAGGCTCCTTGGGACCCGCGGTTCCGGGAGTCCCTTGCTCAGGGTCCCTTTCCTGCAGTGAGGCGCCGTCCGCCTTCCCTGTGTCC
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000229328.10
CDS-3UTR CAA 90 bp TGCACCCAGCCTCATGCACCGCGGGGCCAGGGCTGCAGATCCTCTGCCACCCCTTCCATCGAAACACCGTaGGCCGAGCCTGGGCGGGAG +
Preference number: 5 (lower is better)
Translates to: CTQPHAPRGQGCRSSATPSIETP*AEPGRE
Trigger: CTCCCGCCCAGGCTCGGCCAACGGTGTTTCGATGGA...AGGGGTGGCAGAGGATCTGCAGCCCTGGCCCCGCGGTGCATGAGGCTGGGTGCA
69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000229328.10
ENST00000540121.5
ENST00000541640.5
CDS GCA 90 bp TCCAGCGCGGCGCGCTCACTGCTGGTATTGCCCATGATGGGGGTCTaGGGGGACACAGGGAAGGCGGACGGCGCCTCACTGCAGGAAAGG +
Preference number: 5 (lower is better)
Translates to: SSAARSLLVLPMMGV*GDTGKADGASLQER
Trigger: CCTTTCCTGCAGTGAGGCGCCGTCCGCCTTCCCTGTGTCCCCGCAGACCCCCATCATGGGCAATACCAGCAGTGAGCGCGCCGCGCTGGA
68% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENST00000229328.10
ENST00000537400.1
ENST00000630317.1
CDS CCA 90 bp GACTTCCGCTTCCGGCGACTCCGTAAGTCGGCCCGGCCTAGGGCGTaGAGGTGGCGGCGGCCAGCTAAACGCGCGAGGCTATCTCGATTC +
Preference number: 5 (lower is better)
Translates to: DFRFRRLRKSARPRA*RWRRPAKRARLSRF
Trigger: GAATCGAGATAGCCTCGCGCGTTTAGCTGGCCGCCGCCACCTCCACGCCCTAGGCCGGGCCGACTTACGGAGTCGCCGGAAGCGGAAGTC
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000541640.5
CDS CCA 90 bp CGCTTCCGGCGACTCCGTAAGTCGGCCCGGCCTAGGGCGTGGAGGTaGCGGCGGCCAGCTAAACGCGCGAGGCTATCTCGATTCCATTTC +
Preference number: 5 (lower is better)
Translates to: RFRRLRKSARPRAWR*RRPAKRARLSRFHF
Trigger: GAAATGGAATCGAGATAGCCTCGCGCGTTTAGCTGGCCGCCGCCACCTCCACGCCCTAGGCCGGGCCGACTTACGGAGTCGCCGGAAGCG
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000541640.5
CDS CCA 90 bp GGGCCCTGCCAGCTGAGGCGTGCTGTCCTTACCACTGGCCTCTTCTaGGCCTATACCAGGATGGCTACCCAGCTGCAGGGGCACTCCCAG +
Preference number: 5 (lower is better)
Translates to: GPCQLRRAVLTTGLF*AYTRMATQLQGHSQ
Trigger: CTGGGAGTGCCCCTGCAGCTGGGTAGCCATCCTGGTATAGGCCCAGAAGAGGCCAGTGGTAAGGACAGCACGCCTCAGCTGGCAGGGCCC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000542698.1
CDS-3UTR CAA 90 bp CTGCACCCAGCCTCATGCACCGCGGGGCCAGGGCTGCAGATCCTCTGCCACCCCTCCTTCTCTGGTGCCTaGATTTCCTCGGAGTGGAAG +
Preference number: 5 (lower is better)
Translates to: LHPASCTAGPGLQILCHPSFSGA*ISSEWK
Trigger: CTTCCACTCCGAGGAAATCAAGGCACCAGAGAAGGA...GGGGTGGCAGAGGATCTGCAGCCCTGGCCCCGCGGTGCATGAGGCTGGGTGCAG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000229328.10
ENST00000541640.5
CDS-3UTR CAA 90 bp TGCACCCAGCCTCATGCACCGCGGGGCCAGGGCTGCAGATCCTCTGCCACCCCTGAAATCCCCGTGTCCTaGTTCAGGATGACCTGGAGG +
Preference number: 5 (lower is better)
Translates to: CTQPHAPRGQGCRSSATPEIPVS*FRMTWR
Trigger: CCTCCAGGTCATCCTGAACAAGGACACGGGGATTTC...AGGGGTGGCAGAGGATCTGCAGCCCTGGCCCCGCGGTGCATGAGGCTGGGTGCA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENST00000229328.10
ENST00000540121.5
ENST00000541640.5
CDS CCA 90 bp GGCGTGCTGTCCTTACCACTGGCCTCTTCTGGGCCTATACCAGGATaGCTACCCAGCTGCAGGGGCACTCCCAGCACAGGAGGTGACCTG +
Preference number: 5 (lower is better)
Translates to: GVLSLPLASSGPIPG*LPSCRGTPSTGGDL
Trigger: CAGGTCACCTCCTGTGCTGGGAGTGCCCCTGCAGCTGGGTAGCCATCCTGGTATAGGCCCAGAAGAGGCCAGTGGTAAGGACAGCACGCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000542698.1
CDS CCA 90 bp AAGGGAGCTCCCTGCATGCCTGCTGGAGGCATCGGTGTGTGTCTCTaGCCAGGCATTTACCCCGGCCTCTTTCAAGTGTGGGCCACGGCC +
Preference number: 5 (lower is better)
Translates to: KGAPCMPAGGIGVCL*PGIYPGLFQVWATA
Trigger: GGCCGTGGCCCACACTTGAAAGAGGCCGGGGTAAATGCCTGGCCAGAGACACACACCGATGCCTCCAGCAGGCATGCAGGGAGCTCCCTT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000542698.1
CDS GCA 90 bp CCATTCCCTCTTGGGGAAAGCATGCACGTGTGGAGCCTGGTGGTGTaGTGTCTCCTGGGCCACCATCCGCCCCCAGCTCTTCATATGGGC +
Preference number: 5 (lower is better)
Translates to: PFPLGESMHVWSLVV*CLLGHHPPPALHMG
Trigger: GCCCATATGAAGAGCTGGGGGCGGATGGTGGCCCAGGAGACAGCACACCACCAGGCTCCACACGTGCATGCTTTCCCCAAGAGGGAATGG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENST00000229328.10
ENST00000537057.1
ENST00000540121.5
ENST00000541640.5
ENST00000542698.1
CDS-3UTR CAA 90 bp ACCGAGGCGCTGCAGGAGCTGCTCTGCCTGGACAAACCTTCAAGCAGGACCAGGCTGTCCATCAGGATCTaGGGCCTGTCCCCGTCCTTG +
Preference number: 5 (lower is better)
Translates to: TEALQELLCLDKPSSRTRLSIRI*GLSPSL
Trigger: CAAGGACGGGGACAGGCCCAAGATCCTGATGGACAG...CCTGGTCCTGCTTGAAGGTTTGTCCAGGCAGAGCAGCTCCTGCAGCGCCTCGGT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000229328.10
ENST00000541640.5
CDS GCA 90 bp GCCAACTCAGTGCTGGAAAGATGGTGGGCCCTGCCAGCTGAGGCGTaGTGTCCTTACCACTGGCCTCTTCTGGGCCTATACCAGGATGGC +
Preference number: 5 (lower is better)
Translates to: ANSVLERWWALPAEA*CPYHWPLLGLYQDG
Trigger: GCCATCCTGGTATAGGCCCAGAAGAGGCCAGTGGTAAGGACAGCACGCCTCAGCTGGCAGGGCCCACCATCTTTCCAGCACTGAGTTGGC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000542698.1
CDS CCA 90 bp TGTACAGTCCATTCCCTCTTGGGGAAAGCATGCACGTGTGGAGCCTaGTGGTGTGCTGTCTCCTGGGCCACCATCCGCCCCCAGCTCTTC +
Preference number: 5 (lower is better)
Translates to: CTVHSLLGKACTCGA*WCAVSWATIRPQLF
Trigger: GAAGAGCTGGGGGCGGATGGTGGCCCAGGAGACAGCACACCACCAGGCTCCACACGTGCATGCTTTCCCCAAGAGGGAATGGACTGTACA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENST00000229328.10
ENST00000537057.1
ENST00000540121.5
ENST00000541640.5
ENST00000542698.1
CDS GCA 90 bp TTACCACTGGCCTCTTCTGGGCCTATACCAGGATGGCTACCCAGCTaGAGGGGCACTCCCAGCACAGGAGGTGACCTGAGAAAGGCAAGC +
Preference number: 5 (lower is better)
Translates to: LPLASSGPIPGWLPS*RGTPSTGGDLRKAS
Trigger: GCTTGCCTTTCTCAGGTCACCTCCTGTGCTGGGAGTGCCCCTGCAGCTGGGTAGCCATCCTGGTATAGGCCCAGAAGAGGCCAGTGGTAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000542698.1
CDS CCA 90 bp CCCTGTTGGGTACCCTGTAGGGTAACAAGCACTGAGACCCTGTCCTaGCAGCCCGGCAGGGACCACTGTAGGGACACCTGCATGTGTACA +
Preference number: 5 (lower is better)
Translates to: PCWVPCRVTSTETLS*QPGRDHCRDTCMCT
Trigger: TGTACACATGCAGGTGTCCCTACAGTGGTCCCTGCCGGGCTGCCAGGACAGGGTCTCAGTGCTTGTTACCCTACAGGGTACCCAACAGGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000542698.1
CDS CCA 90 bp GGTGTGTGTCTCTGGCCAGGCATTTACCCCGGCCTCTTTCAAGTGTaGGCCACGGCCCTGTCCTCTTATGGAGGGTGGGGCAGGAAGAAA +
Preference number: 5 (lower is better)
Translates to: GVCLWPGIYPGLFQV*ATALSSYGGWGRKK
Trigger: TTTCTTCCTGCCCCACCCTCCATAAGAGGACAGGGCCGTGGCCCACACTTGAAAGAGGCCGGGGTAAATGCCTGGCCAGAGACACACACC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000542698.1
CDS-3UTR CAA 90 bp AAAATCGAGAATGTAGGTTTAGAACTGCACCCAGCCTCATGCACCGCGGGGCCATCCATCGAAACACCGTaGGCCGAGCCTGGGCGGGAG +
Preference number: 5 (lower is better)
Translates to: KIENVGLELHPASCTAGPSIETP*AEPGRE
Trigger: CTCCCGCCCAGGCTCGGCCAACGGTGTTTCGATGGA...TGGCCCCGCGGTGCATGAGGCTGGGTGCAGTTCTAAACCTACATTCTCGATTTT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000229328.10
ENST00000540121.5
ENST00000541640.5
CDS-3UTR CAA 90 bp GAGAATGTAGGTTTAGAACTGCACCCAGCCTCATGCACCGCGGGGCCAGGGCTGGTGACGTACTTCTTCTaGTACCGGTGGGTTGCGCTG +
Preference number: 5 (lower is better)
Translates to: ENVGLELHPASCTAGPGLVTYFF*YRWVAL
Trigger: CAGCGCAACCCACCGGTACAAGAAGAAGTACGTCAC...CAGCCCTGGCCCCGCGGTGCATGAGGCTGGGTGCAGTTCTAAACCTACATTCTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000229328.10
ENST00000540121.5
ENST00000541640.5
CDS-3UTR CAA 90 bp ACCGAGGCGCTGCAGGAGCTGCTCTGCCTGGACAAACCTTCAAGCAGGACCAGGACAGTCCATTCCCTCTaGGGGAAAGCATGCACGTGT +
Preference number: 5 (lower is better)
Translates to: TEALQELLCLDKPSSRTRTVHSL*GKACTC
Trigger: ACACGTGCATGCTTTCCCCAAGAGGGAATGGACTGT...CCTGGTCCTGCTTGAAGGTTTGTCCAGGCAGAGCAGCTCCTGCAGCGCCTCGGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000229328.10
ENST00000540121.5
ENST00000541640.5
CDS TCA 90 bp GCTGCTGAGAGCACCAACTACCAAGGATCTGGCACCAGCCAAGCCTaGTGTGACTGCTGGCTCAGCCAGTTGCTGTGTGAGCCTAAGAGG +
Preference number: 5 (lower is better)
Translates to: AAESTNYQGSGTSQA*CDCWLSQLLCEPKR
Trigger: CCTCTTAGGCTCACACAGCAACTGGCTGAGCCAGCAGTCACATCAGGCTTGGCTGGTGCCAGATCCTTGGTAGTTGGTGCTCTCAGCAGC
58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000538271.1
ENST00000542698.1
CDS GCA 90 bp TATTTGAGACTGTTGCCAACTCAGTGCTGGAAAGATGGTGGGCCCTaGCAGCTGAGGCGTGCTGTCCTTACCACTGGCCTCTTCTGGGCC +
Preference number: 5 (lower is better)
Translates to: YLRLLPTQCWKDGGP*QLRRAVLTTGLFWA
Trigger: GGCCCAGAAGAGGCCAGTGGTAAGGACAGCACGCCTCAGCTGGCAGGGCCCACCATCTTTCCAGCACTGAGTTGGCAACAGTCTCAAATA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000542698.1
CDS CCA 90 bp CCTGCTTGCTCTCATTCTCTTCTGCCGTCCTTGATTTCCTCGGAGTaGAAGAGGTCGGCGTCTTCGGGGCTGTCCATCAGGATCTTGGGC +
Preference number: 5 (lower is better)
Translates to: PACSHSLLPSLISSE*KRSASSGLSIRILG
Trigger: GCCCAAGATCCTGATGGACAGCCCCGAAGACGCCGACCTCTTCCACTCCGAGGAAATCAAGGACGGCAGAAGAGAATGAGAGCAAGCAGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000537400.1
CDS-3UTR CAA 90 bp CGGGAGCTTTATCATTCACTTCCAGATCATGCTGCCAGGCCAGGAATTCCTCCTTCCATCGAAACACCGTaGGCCGAGCCTGGGCGGGAG +
Preference number: 5 (lower is better)
Translates to: RELYHSLPDHAARPGIPPSIETP*AEPGRE
Trigger: CTCCCGCCCAGGCTCGGCCAACGGTGTTTCGATGGA...AGGAGGAATTCCTGGCCTGGCAGCATGATCTGGAAGTGAATGATAAAGCTCCCG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000537400.1
CDS-3UTR CAA 90 bp CGCTGCAGGAGCTGCTCTGCCTGGACAAACCTTCAAGCAGGACCAGGGCAGGTACCTCTTTTCTTGGACTaGATGAGTCCCCGAGGCTCA +
Preference number: 5 (lower is better)
Translates to: RCRSCSAWTNLQAGPGQVPLFLD*MSPRGS
Trigger: TGAGCCTCGGGGACTCATCAAGTCCAAGAAAAGAGG...TACCTGCCCTGGTCCTGCTTGAAGGTTTGTCCAGGCAGAGCAGCTCCTGCAGCG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000229328.10
ENST00000540121.5
ENST00000541640.5
CDS-3UTR CAA 90 bp ATCGAGAATGTAGGTTTAGAACTGCACCCAGCCTCATGCACCGCGGGGCCAGGGGCAACTGCTGCAGTCTaGCTAACTAGGGGCAGAGGT +
Preference number: 5 (lower is better)
Translates to: IENVGLELHPASCTAGPGATAAV*LTRGRG
Trigger: ACCTCTGCCCCTAGTTAGCAAGACTGCAGCAGTTGC...CCCTGGCCCCGCGGTGCATGAGGCTGGGTGCAGTTCTAAACCTACATTCTCGAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000229328.10
ENST00000541640.5
CDS-3UTR CAA 90 bp GAGCAATGTACAGTCCATTCCCTCTTGGGGAAAGCATGCACGTGTGGAGCCTGGTCCGGGAGACGAAGGTaGCAGTGCCCCGAGATTGTG +
Preference number: 5 (lower is better)
Translates to: EQCTVHSLLGKACTCGAWSGRRR*QCPEIV
Trigger: CACAATCTCGGGGCACTGCAACCTTCGTCTCCCGGA...CCAGGCTCCACACGTGCATGCTTTCCCCAAGAGGGAATGGACTGTACATTGCTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000540121.5
CDS TCA 90 bp CATCTGGCATTTCCCCTGCTTGCTCTCATTCTCTTCTGCCGTCCTTaGTTTCCTCGGAGTGGAAGAGGTCGGCGTCTTCGGGGCTGTCCA +
Preference number: 5 (lower is better)
Translates to: HLAFPLLALILFCRP*FPRSGRGRRLRGCP
Trigger: TGGACAGCCCCGAAGACGCCGACCTCTTCCACTCCGAGGAAATCAAGGACGGCAGAAGAGAATGAGAGCAAGCAGGGGAAATGCCAGATG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000537400.1
CDS GCA 90 bp GTTGGCCGAGCCTGGGCGGGAGCTTTATCATTCACTTCCAGATCATaGTGCCAGGCCAGGAATTCCTCCTTCTCTGGTGCCTCTAGAAGC +
Preference number: 5 (lower is better)
Translates to: VGRAWAGALSFTSRS*CQARNSSFSGASRS
Trigger: GCTTCTAGAGGCACCAGAGAAGGAGGAATTCCTGGCCTGGCAGCATGATCTGGAAGTGAATGATAAAGCTCCCGCCCAGGCTCGGCCAAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000540121.5
CDS CCA 90 bp TGTCAACAAATACTCAGCAAGCTCCCGCTGGGAGGCCATTCAGGGTaGCTGCTGAGAGCACCAACTACCAAGGATCTGGCACCAGCCAAG +
Preference number: 5 (lower is better)
Translates to: CQQILSKLPLGGHSG*LLRAPTTKDLAPAK
Trigger: CTTGGCTGGTGCCAGATCCTTGGTAGTTGGTGCTCTCAGCAGCCACCCTGAATGGCCTCCCAGCGGGAGCTTGCTGAGTATTTGTTGACA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000538271.1
ENST00000542698.1
CDS-3UTR CAA 90 bp AAACACCGTTGGCCGAGCCTGGGCGGGAGCTTTATCATTCACTTCCAGATCATGCGCTCACTGCTGGTATaGCCCATGATGGGGGTCTGC +
Preference number: 5 (lower is better)
Translates to: KHRWPSLGGSFIIHFQIMRSLLV*PMMGVC
Trigger: GCAGACCCCCATCATGGGCAATACCAGCAGTGAGCG...CATGATCTGGAAGTGAATGATAAAGCTCCCGCCCAGGCTCGGCCAACGGTGTTT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000537400.1
CDS-3UTR CAA 90 bp AAAATCGAGAATGTAGGTTTAGAACTGCACCCAGCCTCATGCACCGCGGGGCCACGCTCACTGCTGGTATaGCCCATGATGGGGGTCTGC +
Preference number: 5 (lower is better)
Translates to: KIENVGLELHPASCTAGPRSLLV*PMMGVC
Trigger: GCAGACCCCCATCATGGGCAATACCAGCAGTGAGCG...TGGCCCCGCGGTGCATGAGGCTGGGTGCAGTTCTAAACCTACATTCTCGATTTT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000229328.10
ENST00000541640.5
CDS-3UTR CAA 90 bp GGGCGGGAGCTTTATCATTCACTTCCAGATCATGCTGCCAGGCCAGGAATTCCTCTGTCCATCAGGATCTaGGGCCTGTCCCCGTCCTTG +
Preference number: 5 (lower is better)
Translates to: GRELYHSLPDHAARPGIPLSIRI*GLSPSL
Trigger: CAAGGACGGGGACAGGCCCAAGATCCTGATGGACAG...AGGAATTCCTGGCCTGGCAGCATGATCTGGAAGTGAATGATAAAGCTCCCGCCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000537400.1
CDS-3UTR CAA 90 bp ACCGAGGCGCTGCAGGAGCTGCTCTGCCTGGACAAACCTTCAAGCAGGACCAGGATGGCTACAAAGTTATaGTGGCTTCTGGTGAGGGGA +
Preference number: 5 (lower is better)
Translates to: TEALQELLCLDKPSSRTRMATKL*WLLVRG
Trigger: TCCCCTCACCAGAAGCCACAATAACTTTGTAGCCAT...CCTGGTCCTGCTTGAAGGTTTGTCCAGGCAGAGCAGCTCCTGCAGCGCCTCGGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000229328.10
ENST00000540121.5
ENST00000541640.5
CDS-3UTR CAA 90 bp GAGAATGTAGGTTTAGAACTGCACCCAGCCTCATGCACCGCGGGGCCAGGGCTGACCATCACTCCATCCTaGATAGACAGCGCGTATAGG +
Preference number: 5 (lower is better)
Translates to: ENVGLELHPASCTAGPGLTITPS*IDSAYR
Trigger: CCTATACGCGCTGTCTATCAAGGATGGAGTGATGGT...CAGCCCTGGCCCCGCGGTGCATGAGGCTGGGTGCAGTTCTAAACCTACATTCTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000229328.10
ENST00000540121.5
ENST00000541640.5
CDS-3UTR CAA 90 bp ATCGAGAATGTAGGTTTAGAACTGCACCCAGCCTCATGCACCGCGGGGCCAGGGCCTCTTTTCTTGGACTaGATGAGTCCCCGAGGCTCA +
Preference number: 5 (lower is better)
Translates to: IENVGLELHPASCTAGPGPLFLD*MSPRGS
Trigger: TGAGCCTCGGGGACTCATCAAGTCCAAGAAAAGAGG...CCCTGGCCCCGCGGTGCATGAGGCTGGGTGCAGTTCTAAACCTACATTCTCGAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENST00000229328.10
ENST00000540121.5
ENST00000541640.5
CDS GCA 90 bp GTTGGCCGAGCCTGGGCGGGAGCTTTATCATTCACTTCCAGATCATaGTGCCAGGCCAGGAATTCCTCCTTCTCTGGTGCCTTGATTTCC +
Preference number: 5 (lower is better)
Translates to: VGRAWAGALSFTSRS*CQARNSSFSGALIS
Trigger: GGAAATCAAGGCACCAGAGAAGGAGGAATTCCTGGCCTGGCAGCATGATCTGGAAGTGAATGATAAAGCTCCCGCCCAGGCTCGGCCAAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000229328.10
ENST00000541640.5
CDS CCA 90 bp CACACTGGGCAAGACACCACTACTCTGGAAAATCTGCCACCGGGCTaGCACTCAGAGCTGCCCGCCGCACCTTCCTATGTTTTAAGAGAA +
Preference number: 5 (lower is better)
Translates to: HTGQDTTTLENLPPG*HSELPAAPSYVLRE
Trigger: TTCTCTTAAAACATAGGAAGGTGCGGCGGGCAGCTCTGAGTGCCAGCCCGGTGGCAGATTTTCCAGAGTAGTGGTGTCTTGCCCAGTGTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000538271.1
CDS CCA 90 bp TGTGACCTATTTGAGACTGTTGCCAACTCAGTGCTGGAAAGATGGTaGGCCCTGCCAGCTGAGGCGTGCTGTCCTTACCACTGGCCTCTT +
Preference number: 5 (lower is better)
Translates to: CDLFETVANSVLERW*ALPAEACCPYHWPL
Trigger: AAGAGGCCAGTGGTAAGGACAGCACGCCTCAGCTGGCAGGGCCCACCATCTTTCCAGCACTGAGTTGGCAACAGTCTCAAATAGGTCACA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000542698.1
CDS-3UTR CAA 90 bp GAGAATGTAGGTTTAGAACTGCACCCAGCCTCATGCACCGCGGGGCCAGGGCTGATGGCTACAAAGTTATaGTGGCTTCTGGTGAGGGGA +
Preference number: 5 (lower is better)
Translates to: ENVGLELHPASCTAGPGLMATKL*WLLVRG
Trigger: TCCCCTCACCAGAAGCCACAATAACTTTGTAGCCAT...CAGCCCTGGCCCCGCGGTGCATGAGGCTGGGTGCAGTTCTAAACCTACATTCTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000229328.10
ENST00000540121.5
ENST00000541640.5
CDS-3UTR CAA 90 bp GAGCAATGTACAGTCCATTCCCTCTTGGGGAAAGCATGCACGTGTGGAGCCTGGGCAACTGCTGCAGTCTaGCTAACTAGGGGCAGAGGT +
Preference number: 5 (lower is better)
Translates to: EQCTVHSLLGKACTCGAWATAAV*LTRGRG
Trigger: ACCTCTGCCCCTAGTTAGCAAGACTGCAGCAGTTGC...CCAGGCTCCACACGTGCATGCTTTCCCCAAGAGGGAATGGACTGTACATTGCTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000229328.10
ENST00000541640.5
CDS CCA 90 bp AACTCTTCACCTGTGACCTATTTGAGACTGTTGCCAACTCAGTGCTaGAAAGATGGTGGGCCCTGCCAGCTGAGGCGTGCTGTCCTTACC +
Preference number: 5 (lower is better)
Translates to: NSSPVTYLRLLPTQC*KDGGPCQLRRAVLT
Trigger: GGTAAGGACAGCACGCCTCAGCTGGCAGGGCCCACCATCTTTCCAGCACTGAGTTGGCAACAGTCTCAAATAGGTCACAGGTGAAGAGTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000542698.1
CDS CCA 90 bp ATACCTGGGCAAGACACCACTACTCTGGAAAATCTGCCACCGGGCTaGCACTCAGAGCTGCCCGCCGCACCTTCCTATGTTTTAAGAGAA +
Preference number: 5 (lower is better)
Translates to: IPGQDTTTLENLPPG*HSELPAAPSYVLRE
Trigger: TTCTCTTAAAACATAGGAAGGTGCGGCGGGCAGCTCTGAGTGCCAGCCCGGTGGCAGATTTTCCAGAGTAGTGGTGTCTTGCCCAGGTAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000542698.1
CDS CCA 90 bp GGCCTCTTTCAAGTGTGGGCCACGGCCCTGTCCTCTTATGGAGGGTaGGGCAGGAAGAAAGCAGCTATTAACAGCACTTTCAGAGAACAC +
Preference number: 5 (lower is better)
Translates to: GLFQVWATALSSYGG*GRKKAAINSTFREH
Trigger: GTGTTCTCTGAAAGTGCTGTTAATAGCTGCTTTCTTCCTGCCCCACCCTCCATAAGAGGACAGGGCCGTGGCCCACACTTGAAAGAGGCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000542698.1
CDS-3UTR CAA 90 bp TTTCTTGGACTTGATGAGTCCCCGAGGCTCAAAGCCATGGGGGTGCTAGGAGGAACAGTCCATTCCCTCTaGGGGAAAGCATGCACGTGT +
Preference number: 5 (lower is better)
Translates to: FLGLDESPRLKAMGVLGGTVHSL*GKACTC
Trigger: ACACGTGCATGCTTTCCCCAAGAGGGAATGGACTGT...TCCTCCTAGCACCCCCATGGCTTTGAGCCTCGGGGACTCATCAAGTCCAAGAAA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENST00000229328.10
ENST00000540121.5
ENST00000541640.5
CDS-3UTR CAA 90 bp CGAAACACCGTTGGCCGAGCCTGGGCGGGAGCTTTATCATTCACTTCCAGATCATCTCTTCTGCCGTCCTaGATTTCCTCGGAGTGGAAG +
Preference number: 5 (lower is better)
Translates to: RNTVGRAWAGALSFTSRSSLLPS*ISSEWK
Trigger: CTTCCACTCCGAGGAAATCAAGGACGGCAGAAGAGA...TGATCTGGAAGTGAATGATAAAGCTCCCGCCCAGGCTCGGCCAACGGTGTTTCG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000537400.1
CDS-3UTR CAA 90 bp GGACAAACCTTCAAGCAGGACCAGGGCAGGTATGAAATGTCTTCTGAAGAGTGTCGCTCACTGCTGGTATaGCCCATGATGGGGGTCTGC +
Preference number: 5 (lower is better)
Translates to: GQTFKQDQGRYEMSSEECRSLLV*PMMGVC
Trigger: GCAGACCCCCATCATGGGCAATACCAGCAGTGAGCG...ACACTCTTCAGAAGACATTTCATACCTGCCCTGGTCCTGCTTGAAGGTTTGTCC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000229328.10
ENST00000541640.5
CDS-3UTR CAA 90 bp GAGCAATGTACAGTCCATTCCCTCTTGGGGAAAGCATGCACGTGTGGAGCCTGGACCATCACTCCATCCTaGATAGACAGCGCGTATAGG +
Preference number: 5 (lower is better)
Translates to: EQCTVHSLLGKACTCGAWTITPS*IDSAYR
Trigger: CCTATACGCGCTGTCTATCAAGGATGGAGTGATGGT...CCAGGCTCCACACGTGCATGCTTTCCCCAAGAGGGAATGGACTGTACATTGCTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000229328.10
ENST00000540121.5
ENST00000541640.5
CDS-3UTR CAA 90 bp TTTCTTGGACTTGATGAGTCCCCGAGGCTCAAAGCCATGGGGGTGCTAGGAGGAACCATCACTCCATCCTaGATAGACAGCGCGTATAGG +
Preference number: 5 (lower is better)
Translates to: FLGLDESPRLKAMGVLGGTITPS*IDSAYR
Trigger: CCTATACGCGCTGTCTATCAAGGATGGAGTGATGGT...TCCTCCTAGCACCCCCATGGCTTTGAGCCTCGGGGACTCATCAAGTCCAAGAAA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000229328.10
ENST00000540121.5
ENST00000541640.5
CDS GCA 90 bp AGCATTTGGGATTTGGAAACCAAGATTCTCCCCTTTACTTCCCAGTaGCAGATATCAAAGGACAGGAGGCAGCGCTCAGGCCGACCTCTC +
Preference number: 5 (lower is better)
Translates to: SIWDLETKILPFTSQ*QISKDRRQRSGRPL
Trigger: GAGAGGTCGGCCTGAGCGCTGCCTCCTGTCCTTTGATATCTGGCACTGGGAAGTAAAGGGGAGAATCTTGGTTTCCAAATCCCAAATGCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000542698.1
CDS GCA 90 bp CACTTCCAGATCATGCTGCCAGGCCAGGAATTCCTCCTTCTCTGGTaGCTAGAAGCAGAGCAGTTTACTCAGAAAGCCATAAGCGAGCTC +
Preference number: 5 (lower is better)
Translates to: HFQIMLPGQEFLLLW*LEAEQFTQKAISEL
Trigger: GAGCTCGCTTATGGCTTTCTGAGTAAACTGCTCTGCTTCTAGGCACCAGAGAAGGAGGAATTCCTGGCCTGGCAGCATGATCTGGAAGTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000545223.1
CDS-3UTR CAA 90 bp CTGCCTGGACAAACCTTCAAGCAGGACCAGGGCAGGTATGAAATGTCTTCTGAAGAAATCCCCGTGTCCTaGTTCAGGATGACCTGGAGG +
Preference number: 5 (lower is better)
Translates to: LPGQTFKQDQGRYEMSSEEIPVS*FRMTWR
Trigger: CCTCCAGGTCATCCTGAACAAGGACACGGGGATTTC...TTCAGAAGACATTTCATACCTGCCCTGGTCCTGCTTGAAGGTTTGTCCAGGCAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000229328.10
ENST00000540121.5
ENST00000541640.5
CDS-3UTR CAA 90 bp CCTGGACAAACCTTCAAGCAGGACCAGGGCAGGTATGAAATGTCTTCTGAAGAGGTGACGTACTTCTTCTaGTACCGGTGGGTTGCGCTG +
Preference number: 5 (lower is better)
Translates to: PGQTFKQDQGRYEMSSEEVTYFF*YRWVAL
Trigger: CAGCGCAACCCACCGGTACAAGAAGAAGTACGTCAC...CTCTTCAGAAGACATTTCATACCTGCCCTGGTCCTGCTTGAAGGTTTGTCCAGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000229328.10
ENST00000540121.5
ENST00000541640.5
CDS CCA 90 bp AGTGGTGGTTGCCAGCGGCTAGGAGTGGTGGGGGTAGGGAGATGCTaGTCAAAGAATACAACATTTCAGTTAGACAGGAGGAATACGTTC +
Preference number: 5 (lower is better)
Translates to: SGGCQRLGVVGVGRC*SKNTTFQLDRRNTF
Trigger: GAACGTATTCCTCCTGTCTAACTGAAATGTTGTATTCTTTGACCAGCATCTCCCTACCCCCACCACTCCTAGCCGCTGGCAACCACCACT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000542698.1
CDS-3UTR CAA 90 bp AACTCAGGTATACCAAGTAAATACTGGAACCCAGGGAGCTCACTCCTCCCTCTCTCCTTCTCTGGTGCCTaGATTTCCTCGGAGTGGAAG +
Preference number: 5 (lower is better)
Translates to: NSGIPSKYWNPGSSLLPLSFSGA*ISSEWK
Trigger: CTTCCACTCCGAGGAAATCAAGGCACCAGAGAAGGA...GAGAGGGAGGAGTGAGCTCCCTGGGTTCCAGTATTTACTTGGTATACCTGAGTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000229328.10
ENST00000541640.5
CDS-3UTR CAA 90 bp GGACAAACCTTCAAGCAGGACCAGGGCAGGTATGAAATGTCTTCTGAAGAGTGTGAAATCCCCGTGTCCTaGTTCAGGATGACCTGGAGG +
Preference number: 5 (lower is better)
Translates to: GQTFKQDQGRYEMSSEECEIPVS*FRMTWR
Trigger: CCTCCAGGTCATCCTGAACAAGGACACGGGGATTTC...ACACTCTTCAGAAGACATTTCATACCTGCCCTGGTCCTGCTTGAAGGTTTGTCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000229328.10
ENST00000540121.5
ENST00000541640.5
CDS-3UTR CAA 90 bp CTGCCTGGACAAACCTTCAAGCAGGACCAGGGCAGGTATGAAATGTCTTCTGAACCTCTTTTCTTGGACTaGATGAGTCCCCGAGGCTCA +
Preference number: 5 (lower is better)
Translates to: LPGQTFKQDQGRYEMSSEPLFLD*MSPRGS
Trigger: TGAGCCTCGGGGACTCATCAAGTCCAAGAAAAGAGG...TTCAGAAGACATTTCATACCTGCCCTGGTCCTGCTTGAAGGTTTGTCCAGGCAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000229328.10
ENST00000540121.5
ENST00000541640.5
CDS-3UTR CAA 90 bp ATCGAGAATGTAGGTTTAGAACTGCACCCAGCCTCATGCACCGCGGGGCCAGGGAATCTGTTGTTGATTTaGAAGGACAGGCAAGACCAA +
Preference number: 5 (lower is better)
Translates to: IENVGLELHPASCTAGPGNLLLI*KDRQDQ
Trigger: TTGGTCTTGCCTGTCCTTCAAAATCAACAACAGATT...CCCTGGCCCCGCGGTGCATGAGGCTGGGTGCAGTTCTAAACCTACATTCTCGAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000229328.10
ENST00000540121.5
ENST00000541640.5
CDS CCA 90 bp AAAGCTGGATCACACTGTGAGGGAACAAAGGCAGCGGTGAGCATTTaGGATTTGGAAACCAAGATTCTCCCCTTTACTTCCCAGTGCCAG +
Preference number: 5 (lower is better)
Translates to: KAGSHCEGTKAAVSI*DLETKILPFTSQCQ
Trigger: CTGGCACTGGGAAGTAAAGGGGAGAATCTTGGTTTCCAAATCCCAAATGCTCACCGCTGCCTTTGTTCCCTCACAGTGTGATCCAGCTTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000542698.1
CDS CCA 90 bp ATTCACTTCCAGATCATGCTGCCAGGCCAGGAATTCCTCCTTCTCTaGTGCCTAGAAGCAGAGCAGTTTACTCAGAAAGCCATAAGCGAG +
Preference number: 5 (lower is better)
Translates to: IHFQIMLPGQEFLLL*CLEAEQFTQKAISE
Trigger: CTCGCTTATGGCTTTCTGAGTAAACTGCTCTGCTTCTAGGCACCAGAGAAGGAGGAATTCCTGGCCTGGCAGCATGATCTGGAAGTGAAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000545223.1
CDS-3UTR CAA 90 bp GCTTTATCATTCACTTCCAGATCATGCTGCCAGGCCAGGAATTCCTCCTTCTCTTGGCATTTCCCCTGCTaGCTCTCATTCTCTTCTGCC +
Preference number: 5 (lower is better)
Translates to: ALSFTSRSCCQARNSSFSWHFPC*LSFSSA
Trigger: GGCAGAAGAGAATGAGAGCAAGCAGGGGAAATGCCA...AGAGAAGGAGGAATTCCTGGCCTGGCAGCATGATCTGGAAGTGAATGATAAAGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000537400.1
CDS-3UTR CAA 90 bp AACTCAGGTATACCAAGTAAATACTGGAACCCAGGGAGCTCACTCCTCCCTCTCATGGCTACAAAGTTATaGTGGCTTCTGGTGAGGGGA +
Preference number: 5 (lower is better)
Translates to: NSGIPSKYWNPGSSLLPLMATKL*WLLVRG
Trigger: TCCCCTCACCAGAAGCCACAATAACTTTGTAGCCAT...GAGAGGGAGGAGTGAGCTCCCTGGGTTCCAGTATTTACTTGGTATACCTGAGTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000229328.10
ENST00000541640.5
CDS-3UTR CAA 90 bp GGCAAGACCAACACTGTATTTAGTTCCATAGCCAGGCCTCAACAGGGACAAGTGGCTCTTCATATGGGCTaGTATAACAAGGTGGTGACG +
Preference number: 5 (lower is better)
Translates to: GKTNTVFSSIARPQQGQVALHMG*YNKVVT
Trigger: CGTCACCACCTTGTTATACAAGCCCATATGAAGAGC...CACTTGTCCCTGTTGAGGCCTGGCTATGGAACTAAATACAGTGTTGGTCTTGCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000229328.10
ENST00000540121.5
ENST00000541640.5
CDS-3UTR CAA 90 bp CCTGGACAAACCTTCAAGCAGGACCAGGGCAGGTATGAAATGTCTTCTGAAGAGGCTCTTCATATGGGCTaGTATAACAAGGTGGTGACG +
Preference number: 5 (lower is better)
Translates to: PGQTFKQDQGRYEMSSEEALHMG*YNKVVT
Trigger: CGTCACCACCTTGTTATACAAGCCCATATGAAGAGC...CTCTTCAGAAGACATTTCATACCTGCCCTGGTCCTGCTTGAAGGTTTGTCCAGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000229328.10
ENST00000540121.5
ENST00000541640.5
CDS-3UTR CAA 90 bp TACCCCCAAACTCAGGTATACCAAGTAAATACTGGAACCCAGGGAGCTCACTCCGGAAGTTTACTCCAGTaGTTGAAGGACCCAGATAAG +
Preference number: 5 (lower is better)
Translates to: YPQTQVYQVNTGTQGAHSGSLLQ*LKDPDK
Trigger: CTTATCTGGGTCCTTCAACAACTGGAGTAAACTTCC...GGAGTGAGCTCCCTGGGTTCCAGTATTTACTTGGTATACCTGAGTTTGGGGGTA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000229328.10
ENST00000541640.5
CDS-3UTR CAA 90 bp CCTGGACAAACCTTCAAGCAGGACCAGGGCAGGTATGAAATGTCTTCTGAAGAGGGAAGTTTACTCCAGTaGTTGAAGGACCCAGATAAG +
Preference number: 5 (lower is better)
Translates to: PGQTFKQDQGRYEMSSEEGSLLQ*LKDPDK
Trigger: CTTATCTGGGTCCTTCAACAACTGGAGTAAACTTCC...CTCTTCAGAAGACATTTCATACCTGCCCTGGTCCTGCTTGAAGGTTTGTCCAGG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000229328.10
ENST00000540121.5
ENST00000541640.5
CDS-3UTR CAA 90 bp GACAAACCTTCAAGCAGGACCAGGGCAGGTATGAAATGTCTTCTGAAGAGTGTGGCTCTTCATATGGGCTaGTATAACAAGGTGGTGACG +
Preference number: 5 (lower is better)
Translates to: DKPSSRTRAGMKCLLKSVALHMG*YNKVVT
Trigger: CGTCACCACCTTGTTATACAAGCCCATATGAAGAGC...CACACTCTTCAGAAGACATTTCATACCTGCCCTGGTCCTGCTTGAAGGTTTGTC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000229328.10
ENST00000540121.5
ENST00000541640.5
CDS GCA 90 bp AGTCTCATGAGATCTGATGGTTTTATAAGCATCTGGCATTTCCCCTaGTTGCTCTCATTCTCTTCTGCCGTCCTTGATTTCCTCGGAGTG +
Preference number: 5 (lower is better)
Translates to: SLMRSDGFISIWHFP*LLSFSSAVLDFLGV
Trigger: CACTCCGAGGAAATCAAGGACGGCAGAAGAGAATGAGAGCAAGCAGGGGAAATGCCAGATGCTTATAAAACCATCAGATCTCATGAGACT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000537400.1
CDS-3UTR CAA 90 bp TTTGGCTTAAGAAAAATCGAGAATGTAGGTTTAGAACTGCACCCAGCCTCATGCACAGTCCATTCCCTCTaGGGGAAAGCATGCACGTGT +
Preference number: 5 (lower is better)
Translates to: FGLRKIENVGLELHPASCTVHSL*GKACTC
Trigger: ACACGTGCATGCTTTCCCCAAGAGGGAATGGACTGT...GCATGAGGCTGGGTGCAGTTCTAAACCTACATTCTCGATTTTTCTTAAGCCAAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000229328.10
ENST00000540121.5
ENST00000541640.5
CDS-3UTR CAA 90 bp CAATCTGTTGTTGATTTTGAAGGACAGGCAAGACCAACACTGTATTTAGTTCCAGTGACGTACTTCTTCTaGTACCGGTGGGTTGCGCTG +
Preference number: 5 (lower is better)
Translates to: QSVVDFEGQARPTLYLVPVTYFF*YRWVAL
Trigger: CAGCGCAACCCACCGGTACAAGAAGAAGTACGTCAC...TGGAACTAAATACAGTGTTGGTCTTGCCTGTCCTTCAAAATCAACAACAGATTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000229328.10
ENST00000540121.5
ENST00000541640.5
CDS TCA 90 bp AAGCAGTGTCAACTAAGTGCTTCTAAGGCAGAAGCTACATGTCCTTaGAACTCTTCACCTGTGACCTATTTGAGACTGTTGCCAACTCAG +
Preference number: 5 (lower is better)
Translates to: KQCQLSASKAEATCP*NSSPVTYLRLLPTQ
Trigger: CTGAGTTGGCAACAGTCTCAAATAGGTCACAGGTGAAGAGTTTCAAGGACATGTAGCTTCTGCCTTAGAAGCACTTAGTTGACACTGCTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000542698.1
CDS-3UTR CAA 90 bp CAAGTGGCTGGCCTTAAAAACACACAGATGACTGGAAATGATGTGTGGCCTCAGAATCTGTTGTTGATTTaGAAGGACAGGCAAGACCAA +
Preference number: 5 (lower is better)
Translates to: QVAGLKNTQMTGNDVWPQNLLLI*KDRQDQ
Trigger: TTGGTCTTGCCTGTCCTTCAAAATCAACAACAGATT...CTGAGGCCACACATCATTTCCAGTCATCTGTGTGTTTTTAAGGCCAGCCACTTG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000229328.10
ENST00000540121.5
ENST00000541640.5
CDS TCA 90 bp ATCTTGTCATCTGTGACAGCATGGATAAACCTGGAGGACATTAAGTaGAATGAGCCAGGCACAGAAAGACAAATCCCATGTGATGTCACT +
Preference number: 5 (lower is better)
Translates to: ILSSVTAWINLEDIK*NEPGTERQIPCDVT
Trigger: AGTGACATCACATGGGATTTGTCTTTCTGTGCCTGGCTCATTTCACTTAATGTCCTCCAGGTTTATCCATGCTGTCACAGATGACAAGAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000542698.1
CDS-3UTR CAA 90 bp TTTGGCTTAAGAAAAATCGAGAATGTAGGTTTAGAACTGCACCCAGCCTCATGCGGAAGTTTACTCCAGTaGTTGAAGGACCCAGATAAG +
Preference number: 5 (lower is better)
Translates to: FGLRKIENVGLELHPASCGSLLQ*LKDPDK
Trigger: CTTATCTGGGTCCTTCAACAACTGGAGTAAACTTCC...GCATGAGGCTGGGTGCAGTTCTAAACCTACATTCTCGATTTTTCTTAAGCCAAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000229328.10
ENST00000540121.5
ENST00000541640.5
CDS TCA 90 bp CACTTTCAGAGAACACAGGAAGAGACCATCTGCACTAAACGCTCCTaGGCAATGGATTCAAAACTTGTATCTGTAAGACTCAATGAACCT +
Preference number: 5 (lower is better)
Translates to: HFQRTQEETICTKRS*AMDSKLVSVRLNEP
Trigger: AGGTTCATTGAGTCTTACAGATACAAGTTTTGAATCCATTGCTCAGGAGCGTTTAGTGCAGATGGTCTCTTCCTGTGTTCTCTGAAAGTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000542698.1
CDS TCA 90 bp ATGGATTCAAAACTTGTATCTGTAAGACTCAATGAACCTGAAGAATaGAACGGATACCTGGGCAAGACACCACTACTCTGGAAAATCTGC +
Preference number: 5 (lower is better)
Translates to: MDSKLVSVRLNEPEE*NGYLGKTPLLWKIC
Trigger: GCAGATTTTCCAGAGTAGTGGTGTCTTGCCCAGGTATCCGTTTCATTCTTCAGGTTCATTGAGTCTTACAGATACAAGTTTTGAATCCAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000542698.1
CDS-3UTR CAA 90 bp CAATCTGTTGTTGATTTTGAAGGACAGGCAAGACCAACACTGTATTTAGTTCCAAATCTGTTGTTGATTTaGAAGGACAGGCAAGACCAA +
Preference number: 5 (lower is better)
Translates to: QSVVDFEGQARPTLYLVPNLLLI*KDRQDQ
Trigger: TTGGTCTTGCCTGTCCTTCAAAATCAACAACAGATT...TGGAACTAAATACAGTGTTGGTCTTGCCTGTCCTTCAAAATCAACAACAGATTG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000229328.10
ENST00000540121.5
ENST00000541640.5
CDS CCA 72 bp TTCCGGCGACTCCGTAAGTCGGCCCGGCCTAGGGCGTaGAGGTGGCGGCGGCCAGCTAAACGCGCGAGGCTA +
Preference number: 6 (lower is better)
Translates to: FRRLRKSARPRA*RWRRPAKRARL
Trigger: TAGCCTCGCGCGTTTAGCTGGCCGCCGCCACCTCCACGCCCTAGGCCGGGCCGACTTACGGAGTCGCCGGAA
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000541640.5
CDS CAA 72 bp CCATGCCGCTCCAGCGCGGCGCGCTCACTGCTGGTATaGCCCATGATGGGGGTCTGCCCAGGCAAGCCGCGG +
Preference number: 6 (lower is better)
Translates to: PCRSSAARSLLV*PMMGVCPGKPR
Trigger: CCGCGGCTTGCCTGGGCAGACCCCCATCATGGGCAATACCAGCAGTGAGCGCGCCGCGCTGGAGCGGCATGG
71% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000541640.5
CDS TCA 72 bp GCTCCAGCGCGGCGCGCTCACTGCTGGTATTGCCCATaGTGGGGGTCTGCGGGGACACAGGGAAGGCGGACG +
Preference number: 6 (lower is better)
Translates to: APARRAHCWYCP*WGSAGTQGRRT
Trigger: CGTCCGCCTTCCCTGTGTCCCCGCAGACCCCCATCATGGGCAATACCAGCAGTGAGCGCGCCGCGCTGGAGC
69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000229328.10
ENST00000537400.1
ENST00000630317.1
CDS GCA 72 bp CCCGAGCTGTCCCTCCGGGGCGTCTTATGGCCACCATaGCGCTCCAGCGCGGCGCGCTCACTGCTGGTATTG +
Preference number: 6 (lower is better)
Translates to: PELSLRGVLWPP*RSSAARSLLVL
Trigger: CAATACCAGCAGTGAGCGCGCCGCGCTGGAGCGGCATGGTGGCCATAAGACGCCCCGGAGGGACAGCTCGGG
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000229328.10
ENST00000537400.1
ENST00000541640.5
ENST00000630317.1
CDS CCA 72 bp CGACTCCGTAAGTCGGCCCGGCCTAGGGCGTGGAGGTaGCGGCGGCCAGCTAAACGCGCGAGGCTATCTCGA +
Preference number: 6 (lower is better)
Translates to: RLRKSARPRAWR*RRPAKRARLSR
Trigger: TCGAGATAGCCTCGCGCGTTTAGCTGGCCGCCGCCACCTCCACGCCCTAGGCCGGGCCGACTTACGGAGTCG
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000541640.5
CDS CAA 90 bp TTATGGCCACCATGCCGCTCCAGCGCGGCGCGCTCACTGCTGGTATaGCCCATGATGGGGGTCTGCGGGGACACAGGGAAGGCGGACGGC +
Preference number: 6 (lower is better)
Translates to: LWPPCRSSAARSLLV*PMMGVCGDTGKADG
Trigger: GCCGTCCGCCTTCCCTGTGTCCCCGCAGACCCCCATCATGGGCAATACCAGCAGTGAGCGCGCCGCGCTGGAGCGGCATGGTGGCCATAA
68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000229328.10
ENST00000537400.1
ENST00000630317.1
CDS TCA 72 bp GAAGGCGGACGGCGCCTCACTGCAGGAAAGGGACCCTaGGCAAGGGACTCCCGGAACCGCGGGTCCCAAGGA +
Preference number: 6 (lower is better)
Translates to: EGGRRLTAGKGP*ARDSRNRGSQG
Trigger: TCCTTGGGACCCGCGGTTCCGGGAGTCCCTTGCTCAGGGTCCCTTTCCTGCAGTGAGGCGCCGTCCGCCTTC
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000229328.10
CDS GCA 72 bp GCGCGCTCACTGCTGGTATTGCCCATGATGGGGGTCTaGGGGGACACAGGGAAGGCGGACGGCGCCTCACTG +
Preference number: 6 (lower is better)
Translates to: ARSLLVLPMMGV*GDTGKADGASL
Trigger: CAGTGAGGCGCCGTCCGCCTTCCCTGTGTCCCCGCAGACCCCCATCATGGGCAATACCAGCAGTGAGCGCGC
68% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENST00000229328.10
ENST00000537400.1
ENST00000630317.1
CDS CAA 72 bp CCATGCCGCTCCAGCGCGGCGCGCTCACTGCTGGTATaGCCCATGATGGGGGTCTGCGGGGACACAGGGAAG +
Preference number: 6 (lower is better)
Translates to: PCRSSAARSLLV*PMMGVCGDTGK
Trigger: CTTCCCTGTGTCCCCGCAGACCCCCATCATGGGCAATACCAGCAGTGAGCGCGCCGCGCTGGAGCGGCATGG
68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000229328.10
ENST00000537400.1
ENST00000630317.1
CDS GCA 72 bp TCTGCGGGGACACAGGGAAGGCGGACGGCGCCTCACTaGAGGAAAGGGACCCTGAGCAAGGGACTCCCGGAA +
Preference number: 6 (lower is better)
Translates to: SAGTQGRRTAPH*RKGTLSKGLPE
Trigger: TTCCGGGAGTCCCTTGCTCAGGGTCCCTTTCCTGCAGTGAGGCGCCGTCCGCCTTCCCTGTGTCCCCGCAGA
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000229328.10
ENST00000537400.1
ENST00000630317.1
CDS CCA 72 bp CTCTGGCCAGGCATTTACCCCGGCCTCTTTCAAGTGTaGGCCACGGCCCTGTCCTCTTATGGAGGGTGGGGC +
Preference number: 6 (lower is better)
Translates to: LWPGIYPGLFQV*ATALSSYGGWG
Trigger: GCCCCACCCTCCATAAGAGGACAGGGCCGTGGCCCACACTTGAAAGAGGCCGGGGTAAATGCCTGGCCAGAG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000542698.1
CDS CCA 72 bp GTACCCTGTAGGGTAACAAGCACTGAGACCCTGTCCTaGCAGCCCGGCAGGGACCACTGTAGGGACACCTGC +
Preference number: 6 (lower is better)
Translates to: VPCRVTSTETLS*QPGRDHCRDTC
Trigger: GCAGGTGTCCCTACAGTGGTCCCTGCCGGGCTGCCAGGACAGGGTCTCAGTGCTTGTTACCCTACAGGGTAC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000542698.1
CDS CCA 72 bp CAGCTGAGGCGTGCTGTCCTTACCACTGGCCTCTTCTaGGCCTATACCAGGATGGCTACCCAGCTGCAGGGG +
Preference number: 6 (lower is better)
Translates to: QLRRAVLTTGLF*AYTRMATQLQG
Trigger: CCCCTGCAGCTGGGTAGCCATCCTGGTATAGGCCCAGAAGAGGCCAGTGGTAAGGACAGCACGCCTCAGCTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000542698.1
CDS GCA 72 bp CTGTTGCCAACTCAGTGCTGGAAAGATGGTGGGCCCTaGCAGCTGAGGCGTGCTGTCCTTACCACTGGCCTC +
Preference number: 6 (lower is better)
Translates to: LLPTQCWKDGGP*QLRRAVLTTGL
Trigger: GAGGCCAGTGGTAAGGACAGCACGCCTCAGCTGGCAGGGCCCACCATCTTTCCAGCACTGAGTTGGCAACAG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000542698.1
CDS CCA 72 bp TCCTTACCACTGGCCTCTTCTGGGCCTATACCAGGATaGCTACCCAGCTGCAGGGGCACTCCCAGCACAGGA +
Preference number: 6 (lower is better)
Translates to: SLPLASSGPIPG*LPSCRGTPSTG
Trigger: TCCTGTGCTGGGAGTGCCCCTGCAGCTGGGTAGCCATCCTGGTATAGGCCCAGAAGAGGCCAGTGGTAAGGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000542698.1
CDS CCA 72 bp CCCTGCATGCCTGCTGGAGGCATCGGTGTGTGTCTCTaGCCAGGCATTTACCCCGGCCTCTTTCAAGTGTGG +
Preference number: 6 (lower is better)
Translates to: PCMPAGGIGVCL*PGIYPGLFQVW
Trigger: CCACACTTGAAAGAGGCCGGGGTAAATGCCTGGCCAGAGACACACACCGATGCCTCCAGCAGGCATGCAGGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000542698.1
CDS CAA 72 bp GCTGAGGCAGGATGGTTTGAGTCCGGGAGACGAAGGTaGCAGTGCCCCGAGATTGTGCTACTGCCCTCCAGC +
Preference number: 6 (lower is better)
Translates to: AEAGWFESGRRR*QCPEIVLLPSS
Trigger: GCTGGAGGGCAGTAGCACAATCTCGGGGCACTGCAACCTTCGTCTCCCGGACTCAAACCATCCTGCCTCAGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000540121.5
CDS CCA 72 bp GGGTTTGCAGACGTAGGGCTCCTGATGGTAGGGTCCTaGGGGAGAACTGGACAGCTCAGACACATCGGAGCA +
Preference number: 6 (lower is better)
Translates to: GFADVGLLMVGS*GRTGQLRHIGA
Trigger: TGCTCCGATGTGTCTGAGCTGTCCAGTTCTCCCCCAGGACCCTACCATCAGGAGCCCTACGTCTGCAAACCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENST00000229328.10
ENST00000540121.5
ENST00000541640.5
ENST00000545223.1
ENST00000545870.1
CDS CCA 72 bp ATACTCAGCAAGCTCCCGCTGGGAGGCCATTCAGGGTaGCTGCTGAGAGCACCAACTACCAAGGATCTGGCA +
Preference number: 6 (lower is better)
Translates to: ILSKLPLGGHSG*LLRAPTTKDLA
Trigger: TGCCAGATCCTTGGTAGTTGGTGCTCTCAGCAGCCACCCTGAATGGCCTCCCAGCGGGAGCTTGCTGAGTAT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000538271.1
ENST00000542698.1
CDS CCA 72 bp CAAGACACCACTACTCTGGAAAATCTGCCACCGGGCTaGCACTCAGAGCTGCCCGCCGCACCTTCCTATGTT +
Preference number: 6 (lower is better)
Translates to: QDTTTLENLPPG*HSELPAAPSYV
Trigger: AACATAGGAAGGTGCGGCGGGCAGCTCTGAGTGCCAGCCCGGTGGCAGATTTTCCAGAGTAGTGGTGTCTTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000538271.1
ENST00000542698.1
CDS TCA 72 bp AGCACCAACTACCAAGGATCTGGCACCAGCCAAGCCTaGTGTGACTGCTGGCTCAGCCAGTTGCTGTGTGAG +
Preference number: 6 (lower is better)
Translates to: STNYQGSGTSQA*CDCWLSQLLCE
Trigger: CTCACACAGCAACTGGCTGAGCCAGCAGTCACATCAGGCTTGGCTGGTGCCAGATCCTTGGTAGTTGGTGCT
57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000538271.1
ENST00000542698.1
CDS CCA 72 bp AATTCCTCCTTCTCTGGTGCCTTGATTTCCTCGGAGTaGAAGAGGTCGGCGTCTTCGGGGCTGTCCATCAGG +
Preference number: 6 (lower is better)
Translates to: NSSFSGALISSE*KRSASSGLSIR
Trigger: CCTGATGGACAGCCCCGAAGACGCCGACCTCTTCCACTCCGAGGAAATCAAGGCACCAGAGAAGGAGGAATT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000229328.10
ENST00000541640.5
CDS CCA 72 bp CAAAGCTGGATCACACTGGGCAAGACACCACTACTCTaGAAAATCTGCCACCGGGCTGGCACTCAGAGCTGC +
Preference number: 6 (lower is better)
Translates to: QSWITLGKTPLL*KICHRAGTQSC
Trigger: GCAGCTCTGAGTGCCAGCCCGGTGGCAGATTTTCCAGAGTAGTGGTGTCTTGCCCAGTGTGATCCAGCTTTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000538271.1
CDS CCA 72 bp TCTCATTCTCTTCTGCCGTCCTTGATTTCCTCGGAGTaGAAGAGGTCGGCGTCTTCGGGGCTGTCCATCAGG +
Preference number: 6 (lower is better)
Translates to: SHSLLPSLISSE*KRSASSGLSIR
Trigger: CCTGATGGACAGCCCCGAAGACGCCGACCTCTTCCACTCCGAGGAAATCAAGGACGGCAGAAGAGAATGAGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000537400.1
CDS CCA 72 bp TTTGAGACTGTTGCCAACTCAGTGCTGGAAAGATGGTaGGCCCTGCCAGCTGAGGCGTGCTGTCCTTACCAC +
Preference number: 6 (lower is better)
Translates to: FETVANSVLERW*ALPAEACCPYH
Trigger: GTGGTAAGGACAGCACGCCTCAGCTGGCAGGGCCCACCATCTTTCCAGCACTGAGTTGGCAACAGTCTCAAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000542698.1
CDS CCA 72 bp CCTGTGACCTATTTGAGACTGTTGCCAACTCAGTGCTaGAAAGATGGTGGGCCCTGCCAGCTGAGGCGTGCT +
Preference number: 6 (lower is better)
Translates to: PVTYLRLLPTQC*KDGGPCQLRRA
Trigger: AGCACGCCTCAGCTGGCAGGGCCCACCATCTTTCCAGCACTGAGTTGGCAACAGTCTCAAATAGGTCACAGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000542698.1
CDS GCA 72 bp TCACCTGTGACCTATTTGAGACTGTTGCCAACTCAGTaGTGGAAAGATGGTGGGCCCTGCCAGCTGAGGCGT +
Preference number: 6 (lower is better)
Translates to: SPVTYLRLLPTQ*WKDGGPCQLRR
Trigger: ACGCCTCAGCTGGCAGGGCCCACCATCTTTCCAGCACTGAGTTGGCAACAGTCTCAAATAGGTCACAGGTGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000542698.1
CDS GCA 72 bp CAAGGTGGTGACGTACTTCTTCTTGTACCGGTGGGTTaGGCTGAGCACCATCACTCCATCCTTGATAGACAG +
Preference number: 6 (lower is better)
Translates to: QGGDVLLLVPVG*AEHHHSILDRQ
Trigger: CTGTCTATCAAGGATGGAGTGATGGTGCTCAGCGCAACCCACCGGTACAAGAAGAAGTACGTCACCACCTTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000229328.10
ENST00000540121.5
ENST00000541640.5
ENST00000542698.1
CDS GCA 72 bp CAAGGTGGTGACGTACTTCTTCTTGTACCGGTGGGTTaGGCTGAGCACCATCACTCCATCCTAAGGAACAAG +
Preference number: 6 (lower is better)
Translates to: QGGDVLLLVPVG*AEHHHSILRNK
Trigger: CTTGTTCCTTAGGATGGAGTGATGGTGCTCAGCGCAACCCACCGGTACAAGAAGAAGTACGTCACCACCTTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000537057.1
CDS CCA 72 bp TGCCAGCGGCTAGGAGTGGTGGGGGTAGGGAGATGCTaGTCAAAGAATACAACATTTCAGTTAGACAGGAGG +
Preference number: 6 (lower is better)
Translates to: CQRLGVVGVGRC*SKNTTFQLDRR
Trigger: CCTCCTGTCTAACTGAAATGTTGTATTCTTTGACCAGCATCTCCCTACCCCCACCACTCCTAGCCGCTGGCA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000542698.1
CDS GCA 72 bp GATTTGGAAACCAAGATTCTCCCCTTTACTTCCCAGTaGCAGATATCAAAGGACAGGAGGCAGCGCTCAGGC +
Preference number: 6 (lower is better)
Translates to: DLETKILPFTSQ*QISKDRRQRSG
Trigger: GCCTGAGCGCTGCCTCCTGTCCTTTGATATCTGGCACTGGGAAGTAAAGGGGAGAATCTTGGTTTCCAAATC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000542698.1
CDS CAA 90 bp GGATCACACTGTGAGGGAACAAAGGCAGCGGTGAGCATTTGGGATTaGGAAACCAAGATTCTCCCCTTTACTTCCCAGTGCCAGATATCA +
Preference number: 6 (lower is better)
Translates to: GSHCEGTKAAVSIWD*ETKILPFTSQCQIS
Trigger: TGATATCTGGCACTGGGAAGTAAAGGGGAGAATCTTGGTTTCCAAATCCCAAATGCTCACCGCTGCCTTTGTTCCCTCACAGTGTGATCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000542698.1
CDS CCA 72 bp TATAACAAGGTGGTGACGTACTTCTTCTTGTACCGGTaGGTTGCGCTGAGCACCATCACTCCATCCTTGATA +
Preference number: 6 (lower is better)
Translates to: YNKVVTYFFLYR*VALSTITPSLI
Trigger: TATCAAGGATGGAGTGATGGTGCTCAGCGCAACCCACCGGTACAAGAAGAAGTACGTCACCACCTTGTTATA
49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000229328.10
ENST00000540121.5
ENST00000541640.5
ENST00000542698.1
CDS CAA 90 bp CTCATGAGATCTGATGGTTTTATAAGCATCTGGCATTTCCCCTGCTaGCTCTCATTCTCTTCTGCCGTCCTTGATTTCCTCGGAGTGGAA +
Preference number: 6 (lower is better)
Translates to: LMRSDGFISIWHFPC*LSFSSAVLDFLGVE
Trigger: TTCCACTCCGAGGAAATCAAGGACGGCAGAAGAGAATGAGAGCAAGCAGGGGAAATGCCAGATGCTTATAAAACCATCAGATCTCATGAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000537400.1
CDS TCA 72 bp TCTGTGACAGCATGGATAAACCTGGAGGACATTAAGTaGAATGAGCCAGGCACAGAAAGACAAATCCCATGT +
Preference number: 6 (lower is better)
Translates to: SVTAWINLEDIK*NEPGTERQIPC
Trigger: ACATGGGATTTGTCTTTCTGTGCCTGGCTCATTTCACTTAATGTCCTCCAGGTTTATCCATGCTGTCACAGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000542698.1
CDS CCA 72 bp GGAGAACTGGACAGCTCAGACACATCGGAGCACTTTTaGGAATCCACCATTAAAGCATCAAATACTTCAAAG +
Preference number: 6 (lower is better)
Translates to: GELDSSDTSEHF*ESTIKASNTSK
Trigger: CTTTGAAGTATTTGATGCTTTAATGGTGGATTCCCAAAAGTGCTCCGATGTGTCTGAGCTGTCCAGTTCTCC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENST00000229328.10
ENST00000540121.5
ENST00000541640.5
ENST00000545223.1
ENST00000545870.1
CDS CCA 72 bp ACGTTCACTGCAGCTCTATTCATAATAGCCAAGACGTaGAATCAACGTAGGTGTCCACAATGGATGAATGGA +
Preference number: 6 (lower is better)
Translates to: TFTAALFIIAKT*NQRRCPQWMNG
Trigger: TCCATTCATCCATTGTGGACACCTACGTTGATTCCACGTCTTGGCTATTATGAATAGAGCTGCAGTGAACGT
44% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000542698.1
CDS TCA 72 bp AAACTTGTATCTGTAAGACTCAATGAACCTGAAGAATaGAACGGATACCTGGGCAAGACACCACTACTCTGG +
Preference number: 6 (lower is better)
Translates to: KLVSVRLNEPEE*NGYLGKTPLLW
Trigger: CCAGAGTAGTGGTGTCTTGCCCAGGTATCCGTTTCATTCTTCAGGTTCATTGAGTCTTACAGATACAAGTTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000542698.1
CDS TCA 72 bp AGAACACAGGAAGAGACCATCTGCACTAAACGCTCCTaGGCAATGGATTCAAAACTTGTATCTGTAAGACTC +
Preference number: 6 (lower is better)
Translates to: RTQEETICTKRS*AMDSKLVSVRL
Trigger: GAGTCTTACAGATACAAGTTTTGAATCCATTGCTCAGGAGCGTTTAGTGCAGATGGTCTCTTCCTGTGTTCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000542698.1
CDS CCA 72 bp CAATATGTTGTTTTGAAATATGGACACATTGTGGAATaGCTAAATCAAGCTCATCAACACACGCAGAACATG +
Preference number: 6 (lower is better)
Translates to: QYVVLKYGHIVE*LNQAHQHTQNM
Trigger: CATGTTCTGCGTGTGTTGATGAGCTTGATTTAGCCATTCCACAATGTGTCCATATTTCAAAACAACATATTG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000538271.1
ENST00000542698.1
CDS CAA 90 bp AGAGATCCACTGTACAACACGGTGACTATTAGTAACAATGTATTCTaGAAAATCTCTAAGACAGTAGATTTTAAGTGTTCTCCCTACTGC +
Preference number: 6 (lower is better)
Translates to: RDPLYNTVTISNNVF*KISKTVDFKCSPYC
Trigger: GCAGTAGGGAGAACACTTAAAATCTACTGTCTTAGAGATTTTCAAGAATACATTGTTACTAATAGTCACCGTGTTGTACAGTGGATCTCT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000542698.1