Pregenerated sensors for PRIM1 (Homo sapiens)

Ensembl gene IDs: ENSG00000198056

Ensembl transcript IDs: ENST00000548173.5, ENST00000550224.5, ENST00000552408.1, ENST00000552590.6, ENST00000672280.1

Found 6 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS TCA 90 bp	GGAAAAAGCATTGGAGTAGGCTTTACAGTCAGGCAGACCAGGGCATaGATCCTAAATTTAACAACTAACTTGTCGTGTGATGCCAAGCTC	+
Preference number: 5 (lower is better) Translates to: GKSIGVGFTVRQTRA*ILNLTTNLSCDAKL Trigger: GAGCTTGGCATCACACGACAAGTTAGTTGTTAAATTTAGGATTCATGCCCTGGTCTGCCTGACTGTAAAGCCTACTCCAATGCTTTTTCC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000550224.5
CDS CCA 72 bp	CGCGGAACTCGCCACGGTAAGGATTACCACAGGAATTaGCGGGAACAGCACGGCCGGCGGCCCCGCGACTGC	+
Preference number: 6 (lower is better) Translates to: RGTRHGKDYHRN*REQHGRRPRDC Trigger: GCAGTCGCGGGGCCGCCGGCCGTGCTGTTCCCGCCAATTCCTGTGGTAATCCTTACCGTGGCGAGTTCCGCG 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000672280.1
CDS CAA 72 bp	GCAGCTCGGGCAGCTCGGTGGGGTCAAACGTCTCCATaGAGCGCGGAACTCGCCACGGTAAGGATTACCACA	+
Preference number: 6 (lower is better) Translates to: AARAARWGQTSP*SAELATVRITT Trigger: TGTGGTAATCCTTACCGTGGCGAGTTCCGCGCTCAATGGAGACGTTTGACCCCACCGAGCTGCCCGAGCTGC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000548173.5 ENST00000552590.6 ENST00000672280.1
CDS CAA 90 bp	TTAGGACATATGTCTGCAGAACTAAAGCAGAGTCATCATTACTCATaGTCAGTGATACCACCCACCCTAACAGCAAGACACACAGTGCTC	+
Preference number: 6 (lower is better) Translates to: LGHMSAELKQSHHYS*SVIPPTLTARHTVL Trigger: GAGCACTGTGTGTCTTGCTGTTAGGGTGGGTGGTATCACTGACAATGAGTAATGATGACTCTGCTTTAGTTCTGCAGACATATGTCCTAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000548173.5
CDS GCA 72 bp	CTAAAGGCACATGCCGGTAAATCAGACACCTTAAAGTaGTTGGAGACTTTTCCAACAGACCTGATAAAAGGG	+
Preference number: 6 (lower is better) Translates to: LKAHAGKSDTLK*LETFPTDLIKG Trigger: CCCTTTTATCAGGTCTGTTGGAAAAGTCTCCAAGCACTTTAAGGTGTCTGATTTACCGGCATGTGCCTTTAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000550224.5
CDS CAA 72 bp	CTAGTCCCTAATTTGAAAGCAGTTACCATTCCGTATTaGCTAGGGAACGGTACAAAAGATGAAACAGATGCA	+
Preference number: 6 (lower is better) Translates to: LVPNLKAVTIPY*LGNGTKDETDA Trigger: TGCATCTGTTTCATCTTTTGTACCGTTCCCTAGCAAATACGGAATGGTAACTGCTTTCAAATTAGGGACTAG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000552408.1

---

If you would like us to post a table for your organism of interest, or have questions, please reach out to eerik at stanford dot edu or xjgao at stanford.edu