Pregenerated sensors for PRICKLE2-DT (Homo sapiens)
Ensembl gene IDs: ENSG00000244564Ensembl transcript IDs: ENST00000487097.1, ENST00000659263.1
Found 20 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS TCA 90 bp | TTTAGAAGCCTGGCCAGTTCTCCTAGGAATACAAGGAATGCAGTGTaGGATAGTATTGCAATTCTGATAAGGCCACTGGGACAGGGATGC | + |
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Preference number: 5 (lower is better) Translates to: FRSLASSPRNTRNAV*DSIAILIRPLGQGC Trigger: GCATCCCTGTCCCAGTGGCCTTATCAGAATTGCAATACTATCTCACACTGCATTCCTTGTATTCCTAGGAGAACTGGCCAGGCTTCTAAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000659263.1 |
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| CDS GCA 90 bp | AGCAGGAGCCAGCAAACTATGCTAGACCAAACTGGACCTACTGCCTaGTTTTGTAAACAAAGCTTTATTGAAACACTGTCACTCTCCTTC | + |
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Preference number: 5 (lower is better) Translates to: SRSQQTMLDQTGPTA*FCKQSFIETLSLSF Trigger: GAAGGAGAGTGACAGTGTTTCAATAAAGCTTTGTTTACAAAAGCAGGCAGTAGGTCCAGTTTGGTCTAGCATAGTTTGCTGGCTCCTGCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000659263.1 |
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| CDS TCA 90 bp | TCTCTTTCAAGTGAAGTGGTTAACTATTGTCTGAGTTTCTGCATCTaGGTCAACCCTTACCGACAGCAAGAGTTAACATCTCTGAGGCCT | + |
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Preference number: 5 (lower is better) Translates to: SLSSEVVNYCLSFCI*VNPYRQQELTSLRP Trigger: AGGCCTCAGAGATGTTAACTCTTGCTGTCGGTAAGGGTTGACTCAGATGCAGAAACTCAGACAATAGTTAACCACTTCACTTGAAAGAGA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000659263.1 |
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| CDS GCA 90 bp | AATAAGCCTTGTGTTCATCACAATAATGACTTCCCCATCTGCCATTaGAAGACCACAGACCCCTACATGGTTTACACATTTGCTCCTCAT | + |
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Preference number: 5 (lower is better) Translates to: NKPCVHHNNDFPICH*KTTDPYMVYTFAPH Trigger: ATGAGGAGCAAATGTGTAAACCATGTAGGGGTCTGTGGTCTTGCAATGGCAGATGGGGAAGTCATTATTGTGATGAACACAAGGCTTATT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000659263.1 |
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| CDS GCA 90 bp | CACATTAATAAGCCTTGTGTTCATCACAATAATGACTTCCCCATCTaGCATTGCAAGACCACAGACCCCTACATGGTTTACACATTTGCT | + |
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Preference number: 5 (lower is better) Translates to: HINKPCVHHNNDFPI*HCKTTDPYMVYTFA Trigger: AGCAAATGTGTAAACCATGTAGGGGTCTGTGGTCTTGCAATGGCAGATGGGGAAGTCATTATTGTGATGAACACAAGGCTTATTAATGTG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000659263.1 |
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| CDS TCA 90 bp | TCACACAGCTTCAGCGAGTGTTTGTTTCCTTTTCTGACCTCACTGTaGGTCTTGGAGTCCCAATATAATACTTTTGAATGTATTCTGCAA | + |
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Preference number: 5 (lower is better) Translates to: SHSFSECLFPFLTSL*VLESQYNTFECILQ Trigger: TTGCAGAATACATTCAAAAGTATTATATTGGGACTCCAAGACTCACAGTGAGGTCAGAAAAGGAAACAAACACTCGCTGAAGCTGTGTGA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000487097.1 ENST00000659263.1 |
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| CDS TCA 90 bp | GTATTCTGCAAACAGTGGCATTATAGCAAAGGCGTCTTCCCGTGTTaGCAATTATGTATGAGGATCTCTTCAAGTTCCTTTAGTAACTGT | + |
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Preference number: 5 (lower is better) Translates to: VFCKQWHYSKGVFPC*QLCMRISSSSFSNC Trigger: ACAGTTACTAAAGGAACTTGAAGAGATCCTCATACATAATTGTCAACACGGGAAGACGCCTTTGCTATAATGCCACTGTTTGCAGAATAC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000659263.1 |
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| CDS TCA 90 bp | TTTTGTTTTTCCACCTTACATTATAGCAAAGGCGTCTTCCCGTGTTaGCAATTATGTATGAGGATCTCTTCAAGTTCCTTTAGTAACTGT | + |
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Preference number: 5 (lower is better) Translates to: FCFSTLHYSKGVFPC*QLCMRISSSSFSNC Trigger: ACAGTTACTAAAGGAACTTGAAGAGATCCTCATACATAATTGTCAACACGGGAAGACGCCTTTGCTATAATGTAAGGTGGAAAAACAAAA 37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000487097.1 |
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| CDS TCA 90 bp | ATTACCATGTTGGGGGATATTAAACAATACTGCTTCATGCACCAGTaGCTTATAGTGAATTATGCCATCACACTTAGAATTTTAGTCTCT | + |
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Preference number: 5 (lower is better) Translates to: ITMLGDIKQYCFMHQ*LIVNYAITLRILVS Trigger: AGAGACTAAAATTCTAAGTGTGATGGCATAATTCACTATAAGTCACTGGTGCATGAAGCAGTATTGTTTAATATCCCCCAACATGGTAAT 36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000659263.1 |
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| CDS GCA 72 bp | AGTTCCTTTAGTAACTGTATTGCCGACGGACGGCGCTaGGAGCAGGAGGCGTCCGGCCATGTTCAGCCGGAG | + |
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Preference number: 6 (lower is better) Translates to: SSFSNCIADGRR*EQEASGHVQPE Trigger: CTCCGGCTGAACATGGCCGGACGCCTCCTGCTCGCAGCGCCGTCCGTCGGCAATACAGTTACTAAAGGAACT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000487097.1 ENST00000659263.1 |
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| CDS GCA 72 bp | AGTATTGCAATTCTGATAAGGCCACTGGGACAGGGATaGCCAAGGGCTCATGCATGTCCGTGCTTCTCCTCT | + |
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Preference number: 6 (lower is better) Translates to: SIAILIRPLGQG*PRAHACPCFSS Trigger: AGAGGAGAAGCACGGACATGCATGAGCCCTTGGGCATCCCTGTCCCAGTGGCCTTATCAGAATTGCAATACT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000659263.1 |
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| CDS GCA 72 bp | TTAGGCGCAAAGCTAGATGATGCTTTCCGGTTCTCTTaGAGTAAAGGAGGCCATGTCTCAAGCTTGTGCCAA | + |
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Preference number: 6 (lower is better) Translates to: LGAKLDDAFRFS*SKGGHVSSLCQ Trigger: TTGGCACAAGCTTGAGACATGGCCTCCTTTACTGCAAGAGAACCGGAAAGCATCATCTAGCTTTGCGCCTAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000659263.1 |
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| CDS CCA 72 bp | AAGGAGGCCATGTCTCAAGCTTGTGCCAATGAAATCTaGGGAAAATACGTCCACCAGTCCTCACTGACTCTT | + |
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Preference number: 6 (lower is better) Translates to: KEAMSQACANEI*GKYVHQSSLTL Trigger: AAGAGTCAGTGAGGACTGGTGGACGTATTTTCCCCAGATTTCATTGGCACAAGCTTGAGACATGGCCTCCTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000659263.1 |
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| CDS CCA 72 bp | TCCCCATCTGCCATTGCAAGACCACAGACCCCTACATaGTTTACACATTTGCTCCTCATTCTTCTTGCCATC | + |
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Preference number: 6 (lower is better) Translates to: SPSAIARPQTPT*FTHLLLILLAI Trigger: GATGGCAAGAAGAATGAGGAGCAAATGTGTAAACCATGTAGGGGTCTGTGGTCTTGCAATGGCAGATGGGGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000659263.1 |
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| CDS GCA 72 bp | AAGCCTTGTGTTCATCACAATAATGACTTCCCCATCTaGCATTGCAAGACCACAGACCCCTACATGGTTTAC | + |
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Preference number: 6 (lower is better) Translates to: KPCVHHNNDFPI*HCKTTDPYMVY Trigger: GTAAACCATGTAGGGGTCTGTGGTCTTGCAATGGCAGATGGGGAAGTCATTATTGTGATGAACACAAGGCTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000659263.1 |
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| CDS TCA 72 bp | AGTGAAGTGGTTAACTATTGTCTGAGTTTCTGCATCTaGGTCAACCCTTACCGACAGCAAGAGTTAACATCT | + |
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Preference number: 6 (lower is better) Translates to: SEVVNYCLSFCI*VNPYRQQELTS Trigger: AGATGTTAACTCTTGCTGTCGGTAAGGGTTGACTCAGATGCAGAAACTCAGACAATAGTTAACCACTTCACT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000659263.1 |
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| CDS TCA 72 bp | TTCAGCGAGTGTTTGTTTCCTTTTCTGACCTCACTGTaGGTCTTGGAGTCCCAATATAATACTTTTGAATGT | + |
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Preference number: 6 (lower is better) Translates to: FSECLFPFLTSL*VLESQYNTFEC Trigger: ACATTCAAAAGTATTATATTGGGACTCCAAGACTCACAGTGAGGTCAGAAAAGGAAACAAACACTCGCTGAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000487097.1 ENST00000659263.1 |
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| CDS CAA 72 bp | CCTCACTGTGAGTCTTGGAGTCCCAATATAATACTTTaGAATGTATTCTGCAAACAGTGGCATTATAGCAAA | + |
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Preference number: 6 (lower is better) Translates to: PHCESWSPNIIL*NVFCKQWHYSK Trigger: TTTGCTATAATGCCACTGTTTGCAGAATACATTCAAAAGTATTATATTGGGACTCCAAGACTCACAGTGAGG 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000659263.1 |
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| CDS TCA 72 bp | TTGGGGGATATTAAACAATACTGCTTCATGCACCAGTaGCTTATAGTGAATTATGCCATCACACTTAGAATT | + |
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Preference number: 6 (lower is better) Translates to: LGDIKQYCFMHQ*LIVNYAITLRI Trigger: AATTCTAAGTGTGATGGCATAATTCACTATAAGTCACTGGTGCATGAAGCAGTATTGTTTAATATCCCCCAA 36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000659263.1 |
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| CDS CAA 72 bp | CTTCATCTATGGCACTTTTGTACTACAATTGTGGAGTaGAGTTGTTGTGATAAAGACTGTATGATCCACAAA | + |
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Preference number: 6 (lower is better) Translates to: LHLWHFCTTIVE*SCCDKDCMIHK Trigger: TTTGTGGATCATACAGTCTTTATCACAACAACTCAACTCCACAATTGTAGTACAAAAGTGCCATAGATGAAG 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000659263.1 |
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