RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for PRELID3A (Homo sapiens)

Ensembl gene IDs: ENSG00000141391

Ensembl transcript IDs: ENST00000336990.8, ENST00000440960.6, ENST00000587735.1, ENST00000587862.5, ENST00000588729.5, ENST00000589565.1, ENST00000589952.5, ENST00000590956.5, ENST00000592149.5

Found 329 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp GGCTGGAGGGCGGCACACCCGCCAGCGTTTGTGGAGGAGCCTAAGTaGAGGACAGCGTGGGCGGGCGGGCGGGGGCGGCGCGGGTCACCT +
Preference number: 1 (lower is better)
Translates to: GWRAAHPPAFVEEPK*RTAWAGGRGRRGSP
Trigger: AGGTGACCCGCGCCGCCCCCGCCCGCCCGCCCACGCTGTCCTCCACTTAGGCTCCTCCACAAACGCTGGCGGGTGTGCCGCCCTCCAGCC
76% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENST00000336990.8
ENST00000440960.6
ENST00000587735.1
ENST00000592149.5
3UTR CCA 90 bp CCTGCAGGGAGAGAAGGGGCTGGGCCACTGCGGCAGGCAGGACGATaGGCGCCGCCCCTAAGGGACACGGGCGAGGGCCTCGAGCCCTCC +
Preference number: 1 (lower is better)
Translates to: PAGREGAGPLRQAGR*APPLRDTGEGLEPS
Trigger: GGAGGGCTCGAGGCCCTCGCCCGTGTCCCTTAGGGGCGGCGCCCATCGTCCTGCCTGCCGCAGTGGCCCAGCCCCTTCTCTCCCTGCAGG
74% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENST00000336990.8
ENST00000440960.6
ENST00000587735.1
ENST00000590956.5
ENST00000592149.5
3UTR CCA 90 bp GGCCTCGAGCCCTCCATCCACGCAGACGGCGGCGGTGGGGCTGGCTaGGGCTGCTCCCTGTTGCACGCTCATGAGGGGAGGGACATCTGG +
Preference number: 1 (lower is better)
Translates to: GLEPSIHADGGGGAG*GCSLLHAHEGRDIW
Trigger: CCAGATGTCCCTCCCCTCATGAGCGTGCAACAGGGAGCAGCCCCAGCCAGCCCCACCGCCGCCGTCTGCGTGGATGGAGGGCTCGAGGCC
71% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENST00000336990.8
ENST00000440960.6
ENST00000587735.1
ENST00000589565.1
ENST00000590956.5
ENST00000592149.5
3UTR GCA 90 bp GCGACCCGCGATCAGTCCAGCCTAATCCTCCTCCCCGGCCCTGTGTaGCCTCGCAGCCAGACGTGCTTTTCCGTCCCGTCCTTGCTCGTC +
Preference number: 1 (lower is better)
Translates to: ATRDQSSLILLPGPV*PRSQTCFSVPSLLV
Trigger: GACGAGCAAGGACGGGACGGAAAAGCACGTCTGGCTGCGAGGGCACACAGGGCCGGGGAGGAGGATTAGGCTGGACTGATCGCGGGTCGC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENST00000336990.8
ENST00000440960.6
ENST00000587735.1
ENST00000589565.1
ENST00000590956.5
ENST00000592149.5
3UTR CCA 90 bp GAAGAGAAAGGCCACACATACGCTTTCATAAGCACAGAAAACTTCTaGAAGGCTTTGCGAAAAAGAGCCGACTGGCAGCTTGCGGGAGGC +
Preference number: 1 (lower is better)
Translates to: EEKGHTYAFISTENF*KALRKRADWQLAGG
Trigger: GCCTCCCGCAAGCTGCCAGTCGGCTCTTTTTCGCAAAGCCTTCCAGAAGTTTTCTGTGCTTATGAAAGCGTATGTGTGGCCTTTCTCTTC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000336990.8
ENST00000440960.6
ENST00000587735.1
ENST00000592149.5
3UTR CAA 90 bp GGGGACGGGGGCGGAGAGGCTGGAGGGCGGCACACCCGCCAGCGTTaGTGGAGGAGCCTAAGTGGAGGACAGCGTGGGCGGGCGGGCGGG +
Preference number: 2 (lower is better)
Translates to: GDGGGEAGGRHTRQR*WRSLSGGQRGRAGG
Trigger: CCCGCCCGCCCGCCCACGCTGTCCTCCACTTAGGCTCCTCCACAAACGCTGGCGGGTGTGCCGCCCTCCAGCCTCTCCGCCCCCGTCCCC
76% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000336990.8
ENST00000440960.6
ENST00000587735.1
ENST00000592149.5
3UTR-3UTR GCA 90 bp AGGAGCCTAAGTGGAGGACAGCGTGGGCGGGCGGGCGGGGGCGGCGCGGGTCACCTCCCCGGCCCTGTGTaGCCTCGCAGCCAGACGTGC +
Preference number: 2 (lower is better)
Translates to: RSLSGGQRGRAGGGGAGHLPGPV*PRSQTC
Trigger: GCACGTCTGGCTGCGAGGGCACACAGGGCCGGGGAG...GTGACCCGCGCCGCCCCCGCCCGCCCGCCCACGCTGTCCTCCACTTAGGCTCCT
76% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000336990.8
ENST00000440960.6
ENST00000587735.1
ENST00000592149.5
3UTR-3UTR GCA 90 bp CGAGGGCCTCGAGCCCTCCATCCACGCAGACGGCGGCGGTGGGGCTGGCTGGGGGGTCCCGGGGTCACCTaGGACCCGCGATCAGTCCAG +
Preference number: 2 (lower is better)
Translates to: RGPRALHPRRRRRWGWLGGPGVT*DPRSVQ
Trigger: CTGGACTGATCGCGGGTCGCAGGTGACCCCGGGACC...CCCCAGCCAGCCCCACCGCCGCCGTCTGCGTGGATGGAGGGCTCGAGGCCCTCG
74% GC, longest homopolymer 6 nt, total homopolymer stretches 14 nt.
Matches the following 6 transcripts:
ENST00000336990.8
ENST00000440960.6
ENST00000587735.1
ENST00000589565.1
ENST00000590956.5
ENST00000592149.5
3UTR-3UTR GCA 90 bp GCCCCTAAGGGACACGGGCGAGGGCCTCGAGCCCTCCATCCACGCAGACGGCGGCTCCCCGGCCCTGTGTaGCCTCGCAGCCAGACGTGC +
Preference number: 2 (lower is better)
Translates to: APKGHGRGPRALHPRRRRLPGPV*PRSQTC
Trigger: GCACGTCTGGCTGCGAGGGCACACAGGGCCGGGGAG...CCGCCGTCTGCGTGGATGGAGGGCTCGAGGCCCTCGCCCGTGTCCCTTAGGGGC
73% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENST00000336990.8
ENST00000440960.6
ENST00000587735.1
ENST00000589565.1
ENST00000590956.5
ENST00000592149.5
3UTR-3UTR GCA 90 bp ATGGGCGCCGCCCCTAAGGGACACGGGCGAGGGCCTCGAGCCCTCCATCCACGCCTCCCCGGCCCTGTGTaGCCTCGCAGCCAGACGTGC +
Preference number: 2 (lower is better)
Translates to: MGAAPKGHGRGPRALHPRLPGPV*PRSQTC
Trigger: GCACGTCTGGCTGCGAGGGCACACAGGGCCGGGGAG...GCGTGGATGGAGGGCTCGAGGCCCTCGCCCGTGTCCCTTAGGGGCGGCGCCCAT
73% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENST00000336990.8
ENST00000440960.6
ENST00000587735.1
ENST00000589565.1
ENST00000590956.5
ENST00000592149.5
3UTR-3UTR GCA 90 bp CGAGGGGACGGGGGCGGAGAGGCTGGAGGGCGGCACACCCGCCAGCGTTTGTGGGGTCCCGGGGTCACCTaGGACCCGCGATCAGTCCAG +
Preference number: 2 (lower is better)
Translates to: RGDGGGEAGGRHTRQRLWGPGVT*DPRSVQ
Trigger: CTGGACTGATCGCGGGTCGCAGGTGACCCCGGGACC...CCACAAACGCTGGCGGGTGTGCCGCCCTCCAGCCTCTCCGCCCCCGTCCCCTCG
73% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 4 transcripts:
ENST00000336990.8
ENST00000440960.6
ENST00000587735.1
ENST00000592149.5
3UTR-3UTR GCA 90 bp GCAGGACGATGGGCGCCGCCCCTAAGGGACACGGGCGAGGGCCTCGAGCCCTCCGGGGCTGCTCCCTGTTaGACGCTCATGAGGGGAGGG +
Preference number: 2 (lower is better)
Translates to: AGRWAPPLRDTGEGLEPSGAAPC*TLMRGG
Trigger: CCCTCCCCTCATGAGCGTGCAACAGGGAGCAGCCCC...GGAGGGCTCGAGGCCCTCGCCCGTGTCCCTTAGGGGCGGCGCCCATCGTCCTGC
72% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 6 transcripts:
ENST00000336990.8
ENST00000440960.6
ENST00000587735.1
ENST00000589565.1
ENST00000590956.5
ENST00000592149.5
3UTR-3UTR GCA 90 bp GGGGCTGGGCCACTGCGGCAGGCAGGACGATGGGCGCCGCCCCTAAGGGACACGGGGGCTGCTCCCTGTTaGACGCTCATGAGGGGAGGG +
Preference number: 2 (lower is better)
Translates to: GAGPLRQAGRWAPPLRDTGAAPC*TLMRGG
Trigger: CCCTCCCCTCATGAGCGTGCAACAGGGAGCAGCCCC...CGTGTCCCTTAGGGGCGGCGCCCATCGTCCTGCCTGCCGCAGTGGCCCAGCCCC
72% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 5 transcripts:
ENST00000336990.8
ENST00000440960.6
ENST00000587735.1
ENST00000590956.5
ENST00000592149.5
3UTR-3UTR GCA 90 bp GCCACTGCGGCAGGCAGGACGATGGGCGCCGCCCCTAAGGGACACGGGCGAGGGGGGGCTGGCTGGGGCTaGTCCCTGTTGCACGCTCAT +
Preference number: 2 (lower is better)
Translates to: ATAAGRTMGAAPKGHGRGGAGWG*SLLHAH
Trigger: ATGAGCGTGCAACAGGGAGCAGCCCCAGCCAGCCCC...CCCTCGCCCGTGTCCCTTAGGGGCGGCGCCCATCGTCCTGCCTGCCGCAGTGGC
72% GC, longest homopolymer 7 nt, total homopolymer stretches 15 nt.
Matches the following 5 transcripts:
ENST00000336990.8
ENST00000440960.6
ENST00000587735.1
ENST00000590956.5
ENST00000592149.5
3UTR-3UTR CCA 90 bp CCACTGCGGCAGGCAGGACGATGGGCGCCGCCCCTAAGGGACACGGGCGAGGGCGAGGGGAGGGACATCTaGTCCCGGGGTCACCTGCGA +
Preference number: 2 (lower is better)
Translates to: PLRQAGRWAPPLRDTGEGEGRDI*SRGHLR
Trigger: TCGCAGGTGACCCCGGGACCAGATGTCCCTCCCCTC...GCCCTCGCCCGTGTCCCTTAGGGGCGGCGCCCATCGTCCTGCCTGCCGCAGTGG
72% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENST00000336990.8
ENST00000440960.6
ENST00000587735.1
ENST00000590956.5
ENST00000592149.5
3UTR-3UTR CCA 90 bp GCAGGACGATGGGCGCCGCCCCTAAGGGACACGGGCGAGGGCCTCGAGCCCTCCGAGGGGAGGGACATCTaGTCCCGGGGTCACCTGCGA +
Preference number: 2 (lower is better)
Translates to: AGRWAPPLRDTGEGLEPSEGRDI*SRGHLR
Trigger: TCGCAGGTGACCCCGGGACCAGATGTCCCTCCCCTC...GGAGGGCTCGAGGCCCTCGCCCGTGTCCCTTAGGGGCGGCGCCCATCGTCCTGC
72% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 6 transcripts:
ENST00000336990.8
ENST00000440960.6
ENST00000587735.1
ENST00000589565.1
ENST00000590956.5
ENST00000592149.5
3UTR-3UTR CCA 90 bp GCCCCTAAGGGACACGGGCGAGGGCCTCGAGCCCTCCATCCACGCAGACGGCGGAGGGAGAGAAGGGGCTaGGCCACTGCGGCAGGCAGG +
Preference number: 2 (lower is better)
Translates to: APKGHGRGPRALHPRRRRRERRG*ATAAGR
Trigger: CCTGCCTGCCGCAGTGGCCCAGCCCCTTCTCTCCCT...CCGCCGTCTGCGTGGATGGAGGGCTCGAGGCCCTCGCCCGTGTCCCTTAGGGGC
72% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENST00000336990.8
ENST00000440960.6
ENST00000587735.1
ENST00000590956.5
ENST00000592149.5
3UTR-3UTR CCA 90 bp ACACGGGCGAGGGCCTCGAGCCCTCCATCCACGCAGACGGCGGCGGTGGGGCTGGTGGAGGAGCCTAAGTaGAGGACAGCGTGGGCGGGC +
Preference number: 2 (lower is better)
Translates to: TRARASSPPSTQTAAVGLVEEPK*RTAWAG
Trigger: GCCCGCCCACGCTGTCCTCCACTTAGGCTCCTCCAC...CAGCCCCACCGCCGCCGTCTGCGTGGATGGAGGGCTCGAGGCCCTCGCCCGTGT
72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000336990.8
ENST00000440960.6
ENST00000587735.1
ENST00000592149.5
3UTR-3UTR GCA 90 bp CCTCCAGCCTGGGCGCAGGATGTCCCCCGGGCACGGCAGTGGCAGACTGGAGGGGGGGCTGCTCCCTGTTaGACGCTCATGAGGGGAGGG +
Preference number: 2 (lower is better)
Translates to: PPAWAQDVPRARQWQTGGGAAPC*TLMRGG
Trigger: CCCTCCCCTCATGAGCGTGCAACAGGGAGCAGCCCC...CCCTCCAGTCTGCCACTGCCGTGCCCGGGGGACATCCTGCGCCCAGGCTGGAGG
71% GC, longest homopolymer 7 nt, total homopolymer stretches 16 nt.
Matches the following 4 transcripts:
ENST00000336990.8
ENST00000440960.6
ENST00000587735.1
ENST00000592149.5
3UTR-3UTR GCA 90 bp GCCCCTAAGGGACACGGGCGAGGGCCTCGAGCCCTCCATCCACGCAGACGGCGGGGGGCTGGCTGGGGCTaGTCCCTGTTGCACGCTCAT +
Preference number: 2 (lower is better)
Translates to: APKGHGRGPRALHPRRRRGAGWG*SLLHAH
Trigger: ATGAGCGTGCAACAGGGAGCAGCCCCAGCCAGCCCC...CCGCCGTCTGCGTGGATGGAGGGCTCGAGGCCCTCGCCCGTGTCCCTTAGGGGC
71% GC, longest homopolymer 6 nt, total homopolymer stretches 14 nt.
Matches the following 6 transcripts:
ENST00000336990.8
ENST00000440960.6
ENST00000587735.1
ENST00000589565.1
ENST00000590956.5
ENST00000592149.5
3UTR-3UTR GCA 90 bp CCTCCAGCCTGGGCGCAGGATGTCCCCCGGGCACGGCAGTGGCAGACTGGAGGGGGGGCTGGCTGGGGCTaGTCCCTGTTGCACGCTCAT +
Preference number: 2 (lower is better)
Translates to: PPAWAQDVPRARQWQTGGGAGWG*SLLHAH
Trigger: ATGAGCGTGCAACAGGGAGCAGCCCCAGCCAGCCCC...CCCTCCAGTCTGCCACTGCCGTGCCCGGGGGACATCCTGCGCCCAGGCTGGAGG
71% GC, longest homopolymer 7 nt, total homopolymer stretches 16 nt.
Matches the following 4 transcripts:
ENST00000336990.8
ENST00000440960.6
ENST00000587735.1
ENST00000592149.5
3UTR-3UTR GCA 90 bp AGGGGCTGGGCCACTGCGGCAGGCAGGACGATGGGCGCCGCCCCTAAGGGACACGGGGCTGGCTGGGGCTaGTCCCTGTTGCACGCTCAT +
Preference number: 2 (lower is better)
Translates to: RGWATAAGRTMGAAPKGHGAGWG*SLLHAH
Trigger: ATGAGCGTGCAACAGGGAGCAGCCCCAGCCAGCCCC...GTGTCCCTTAGGGGCGGCGCCCATCGTCCTGCCTGCCGCAGTGGCCCAGCCCCT
71% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 5 transcripts:
ENST00000336990.8
ENST00000440960.6
ENST00000587735.1
ENST00000590956.5
ENST00000592149.5
3UTR-3UTR TCA 90 bp CGAGGGGACGGGGGCGGAGAGGCTGGAGGGCGGCACACCCGCCAGCGTTTGTGGCCTGTTGCACGCTCATaGGGGGAGGGACATCTGGTC +
Preference number: 2 (lower is better)
Translates to: RGDGGGEAGGRHTRQRLWPVARS*GEGHLV
Trigger: GACCAGATGTCCCTCCCCTCATGAGCGTGCAACAGG...CCACAAACGCTGGCGGGTGTGCCGCCCTCCAGCCTCTCCGCCCCCGTCCCCTCG
70% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 4 transcripts:
ENST00000336990.8
ENST00000440960.6
ENST00000587735.1
ENST00000592149.5
3UTR-3UTR GCA 90 bp AGGGCCTCGAGCCCTCCATCCACGCAGACGGCGGCGGTGGGGCTGGCTGGGGCTCCTCGCAGCCAGACGTaGTTTTCCGTCCCGTCCTTG +
Preference number: 2 (lower is better)
Translates to: RASSPPSTQTAAVGLAGAPRSQT*FSVPSL
Trigger: CAAGGACGGGACGGAAAAGCACGTCTGGCTGCGAGG...AGCCCCAGCCAGCCCCACCGCCGCCGTCTGCGTGGATGGAGGGCTCGAGGCCCT
70% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 6 transcripts:
ENST00000336990.8
ENST00000440960.6
ENST00000587735.1
ENST00000589565.1
ENST00000590956.5
ENST00000592149.5
3UTR-3UTR GCA 90 bp GGCTGGGCCACTGCGGCAGGCAGGACGATGGGCGCCGCCCCTAAGGGACACGGGCCTCGCAGCCAGACGTaGTTTTCCGTCCCGTCCTTG +
Preference number: 2 (lower is better)
Translates to: GWATAAGRTMGAAPKGHGPRSQT*FSVPSL
Trigger: CAAGGACGGGACGGAAAAGCACGTCTGGCTGCGAGG...CCCGTGTCCCTTAGGGGCGGCGCCCATCGTCCTGCCTGCCGCAGTGGCCCAGCC
70% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENST00000336990.8
ENST00000440960.6
ENST00000587735.1
ENST00000590956.5
ENST00000592149.5
3UTR-3UTR GCA 90 bp GCTGGGCCACTGCGGCAGGCAGGACGATGGGCGCCGCCCCTAAGGGACACGGGCCCTCGCAGCCAGACGTaGTTTTCCGTCCCGTCCTTG +
Preference number: 2 (lower is better)
Translates to: AGPLRQAGRWAPPLRDTGPRSQT*FSVPSL
Trigger: CAAGGACGGGACGGAAAAGCACGTCTGGCTGCGAGG...GCCCGTGTCCCTTAGGGGCGGCGCCCATCGTCCTGCCTGCCGCAGTGGCCCAGC
70% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENST00000336990.8
ENST00000440960.6
ENST00000587735.1
ENST00000590956.5
ENST00000592149.5
3UTR-3UTR GCA 90 bp TTGCACGCTCATGAGGGGAGGGACATCTGGTCCCGGGGTCACCTGCGACCCGCGCTCCCCGGCCCTGTGTaGCCTCGCAGCCAGACGTGC +
Preference number: 2 (lower is better)
Translates to: LHAHEGRDIWSRGHLRPALPGPV*PRSQTC
Trigger: GCACGTCTGGCTGCGAGGGCACACAGGGCCGGGGAG...CGCGGGTCGCAGGTGACCCCGGGACCAGATGTCCCTCCCCTCATGAGCGTGCAA
70% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 6 transcripts:
ENST00000336990.8
ENST00000440960.6
ENST00000587735.1
ENST00000589565.1
ENST00000590956.5
ENST00000592149.5
3UTR-3UTR GCA 90 bp GGGGAGGGACATCTGGTCCCGGGGTCACCTGCGACCCGCGATCAGTCCAGCCTACTCCCCGGCCCTGTGTaGCCTCGCAGCCAGACGTGC +
Preference number: 2 (lower is better)
Translates to: GEGHLVPGSPATRDQSSLLPGPV*PRSQTC
Trigger: GCACGTCTGGCTGCGAGGGCACACAGGGCCGGGGAG...TAGGCTGGACTGATCGCGGGTCGCAGGTGACCCCGGGACCAGATGTCCCTCCCC
70% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 6 transcripts:
ENST00000336990.8
ENST00000440960.6
ENST00000587735.1
ENST00000589565.1
ENST00000590956.5
ENST00000592149.5
3UTR-3UTR CCA 90 bp CACGCTCATGAGGGGAGGGACATCTGGTCCCGGGGTCACCTGCGACCCGCGATCCGGCAGGCAGGACGATaGGCGCCGCCCCTAAGGGAC +
Preference number: 2 (lower is better)
Translates to: HAHEGRDIWSRGHLRPAIRQAGR*APPLRD
Trigger: GTCCCTTAGGGGCGGCGCCCATCGTCCTGCCTGCCG...GATCGCGGGTCGCAGGTGACCCCGGGACCAGATGTCCCTCCCCTCATGAGCGTG
70% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENST00000336990.8
ENST00000440960.6
ENST00000587735.1
ENST00000590956.5
ENST00000592149.5
3UTR-3UTR TCA 90 bp GGGACGGGGGCGGAGAGGCTGGAGGGCGGCACACCCGCCAGCGTTTGTGGAGGACCTGTTGCACGCTCATaGGGGGAGGGACATCTGGTC +
Preference number: 2 (lower is better)
Translates to: GTGAERLEGGTPASVCGGPVARS*GEGHLV
Trigger: GACCAGATGTCCCTCCCCTCATGAGCGTGCAACAGG...TCCTCCACAAACGCTGGCGGGTGTGCCGCCCTCCAGCCTCTCCGCCCCCGTCCC
69% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENST00000336990.8
ENST00000440960.6
ENST00000587735.1
ENST00000592149.5
3UTR-3UTR TCA 90 bp ATGGGCGCCGCCCCTAAGGGACACGGGCGAGGGCCTCGAGCCCTCCATCCACGCCCTGTTGCACGCTCATaGGGGGAGGGACATCTGGTC +
Preference number: 2 (lower is better)
Translates to: MGAAPKGHGRGPRALHPRPVARS*GEGHLV
Trigger: GACCAGATGTCCCTCCCCTCATGAGCGTGCAACAGG...GCGTGGATGGAGGGCTCGAGGCCCTCGCCCGTGTCCCTTAGGGGCGGCGCCCAT
69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 6 transcripts:
ENST00000336990.8
ENST00000440960.6
ENST00000587735.1
ENST00000589565.1
ENST00000590956.5
ENST00000592149.5
3UTR-3UTR GCA 90 bp CCTAAGGGACACGGGCGAGGGCCTCGAGCCCTCCATCCACGCAGACGGCGGCGGCCTCGCAGCCAGACGTaGTTTTCCGTCCCGTCCTTG +
Preference number: 2 (lower is better)
Translates to: PKGHGRGPRALHPRRRRRPRSQT*FSVPSL
Trigger: CAAGGACGGGACGGAAAAGCACGTCTGGCTGCGAGG...CCGCCGCCGTCTGCGTGGATGGAGGGCTCGAGGCCCTCGCCCGTGTCCCTTAGG
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENST00000336990.8
ENST00000440960.6
ENST00000587735.1
ENST00000589565.1
ENST00000590956.5
ENST00000592149.5
3UTR-3UTR GCA 90 bp CACGCTCATGAGGGGAGGGACATCTGGTCCCGGGGTCACCTGCGACCCGCGATCGGTCCCGGGGTCACCTaGGACCCGCGATCAGTCCAG +
Preference number: 2 (lower is better)
Translates to: HAHEGRDIWSRGHLRPAIGPGVT*DPRSVQ
Trigger: CTGGACTGATCGCGGGTCGCAGGTGACCCCGGGACC...GATCGCGGGTCGCAGGTGACCCCGGGACCAGATGTCCCTCCCCTCATGAGCGTG
69% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 6 transcripts:
ENST00000336990.8
ENST00000440960.6
ENST00000587735.1
ENST00000589565.1
ENST00000590956.5
ENST00000592149.5
3UTR-3UTR CCA 90 bp GCTGCTCCCTGTTGCACGCTCATGAGGGGAGGGACATCTGGTCCCGGGGTCACCCGGCAGGCAGGACGATaGGCGCCGCCCCTAAGGGAC +
Preference number: 2 (lower is better)
Translates to: AAPCCTLMRGGTSGPGVTRQAGR*APPLRD
Trigger: GTCCCTTAGGGGCGGCGCCCATCGTCCTGCCTGCCG...GGTGACCCCGGGACCAGATGTCCCTCCCCTCATGAGCGTGCAACAGGGAGCAGC
69% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENST00000336990.8
ENST00000440960.6
ENST00000587735.1
ENST00000590956.5
ENST00000592149.5
3UTR-3UTR GCA 90 bp CCCGGGGTCACCTGCGACCCGCGATCAGTCCAGCCTAATCCTCCTCCCCGGCCCCCTCGCAGCCAGACGTaGTTTTCCGTCCCGTCCTTG +
Preference number: 2 (lower is better)
Translates to: PGVTCDPRSVQPNPPPRPPRSQT*FSVPSL
Trigger: CAAGGACGGGACGGAAAAGCACGTCTGGCTGCGAGG...GGGCCGGGGAGGAGGATTAGGCTGGACTGATCGCGGGTCGCAGGTGACCCCGGG
68% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 6 transcripts:
ENST00000336990.8
ENST00000440960.6
ENST00000587735.1
ENST00000589565.1
ENST00000590956.5
ENST00000592149.5
3UTR-3UTR CCA 90 bp GGCGGAGAGGCTGGAGGGCGGCACACCCGCCAGCGTTTGTGGAGGAGCCTAAGTGAGGGGAGGGACATCTaGTCCCGGGGTCACCTGCGA +
Preference number: 2 (lower is better)
Translates to: GGEAGGRHTRQRLWRSLSEGRDI*SRGHLR
Trigger: TCGCAGGTGACCCCGGGACCAGATGTCCCTCCCCTC...ACTTAGGCTCCTCCACAAACGCTGGCGGGTGTGCCGCCCTCCAGCCTCTCCGCC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000336990.8
ENST00000440960.6
ENST00000587735.1
ENST00000592149.5
3UTR-3UTR TCA 90 bp AGGGCCTCGAGCCCTCCATCCACGCAGACGGCGGCGGTGGGGCTGGCTGGGGCTAAGCATCACCATTTATaGCAAGCACAGGCACAGGCC +
Preference number: 2 (lower is better)
Translates to: RASSPPSTQTAAVGLAGAKHHHL*QAQAQA
Trigger: GGCCTGTGCCTGTGCTTGTCATAAATGGTGATGCTT...AGCCCCAGCCAGCCCCACCGCCGCCGTCTGCGTGGATGGAGGGCTCGAGGCCCT
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000440960.6
ENST00000587735.1
ENST00000590956.5
ENST00000592149.5
3UTR-3UTR GCA 90 bp CTGTGTGCCCTCGCAGCCAGACGTGCTTTTCCGTCCCGTCCTTGCTCGTCCTCTGGTCCCGGGGTCACCTaGGACCCGCGATCAGTCCAG +
Preference number: 2 (lower is better)
Translates to: LCALAARRAFPSRPCSSSGPGVT*DPRSVQ
Trigger: CTGGACTGATCGCGGGTCGCAGGTGACCCCGGGACC...AGAGGACGAGCAAGGACGGGACGGAAAAGCACGTCTGGCTGCGAGGGCACACAG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENST00000336990.8
ENST00000440960.6
ENST00000587735.1
ENST00000589565.1
ENST00000590956.5
ENST00000592149.5
3UTR-3UTR TCA 90 bp GGACCCCAGCCCTCTCCCCGCATGAGGAGCCTCGTCAGGAGAGGCTTAGCCACTAGGAGAGCTGCTTGGTaGTCTGCAGGACCGAGGGGA +
Preference number: 2 (lower is better)
Translates to: GPQPSPRMRSLVRRGLATRRAAW*SAGPRG
Trigger: TCCCCTCGGTCCTGCAGATCACCAAGCAGCTCTCCT...AGTGGCTAAGCCTCTCCTGACGAGGCTCCTCATGCGGGGAGAGGGCTGGGGTCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENST00000336990.8
ENST00000440960.6
ENST00000587735.1
ENST00000592149.5
3UTR-3UTR CCA 90 bp GATACTATGAGGGATCCATGGCCTCCAGCCCCAGCAGGTGAGGCTGGCAAGCAGAGGGAGAGAAGGGGCTaGGCCACTGCGGCAGGCAGG +
Preference number: 2 (lower is better)
Translates to: DTMRDPWPPAPAGEAGKQRERRG*ATAAGR
Trigger: CCTGCCTGCCGCAGTGGCCCAGCCCCTTCTCTCCCT...CTGCTTGCCAGCCTCACCTGCTGGGGCTGGAGGCCATGGATCCCTCATAGTATC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000336990.8
ENST00000440960.6
ENST00000587735.1
ENST00000592149.5
3UTR-3UTR GCA 90 bp AGGAGCCTCGTCAGGAGAGGCTTAGCCACTCCAGGAAAGGCATTTGGGGGCCGAGGGGCTGGCTGGGGCTaGTCCCTGTTGCACGCTCAT +
Preference number: 2 (lower is better)
Translates to: RSLVRRGLATPGKAFGGRGAGWG*SLLHAH
Trigger: ATGAGCGTGCAACAGGGAGCAGCCCCAGCCAGCCCC...TCGGCCCCCAAATGCCTTTCCTGGAGTGGCTAAGCCTCTCCTGACGAGGCTCCT
63% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENST00000336990.8
ENST00000440960.6
ENST00000587735.1
ENST00000592149.5
3UTR-3UTR TCA 90 bp CTGGCAGCTTGCGGGAGGCCTTTACCCTTCAACGGACTCCAGACTCCTGTACTCAGCCCTCTCCCCGCATaGGGAGCCTCGTCAGGAGAG +
Preference number: 2 (lower is better)
Translates to: LAACGRPLPFNGLQTPVLSPLPA*GASSGE
Trigger: CTCTCCTGACGAGGCTCCTCATGCGGGGAGAGGGCT...GAGTACAGGAGTCTGGAGTCCGTTGAAGGGTAAAGGCCTCCCGCAAGCTGCCAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000336990.8
ENST00000440960.6
ENST00000587735.1
ENST00000592149.5
3UTR-3UTR TCA 90 bp CACGCTCATGAGGGGAGGGACATCTGGTCCCGGGGTCACCTGCGACCCGCGATCTCTGGGTTCTCTGGATaGGGTGTGTACACCAACCTC +
Preference number: 2 (lower is better)
Translates to: HAHEGRDIWSRGHLRPAISGFSG*GVYTNL
Trigger: GAGGTTGGTGTACACACCTCATCCAGAGAACCCAGA...GATCGCGGGTCGCAGGTGACCCCGGGACCAGATGTCCCTCCCCTCATGAGCGTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000589565.1
3UTR-3UTR TCA 90 bp GCTCCCTGTTGCACGCTCATGAGGGGAGGGACATCTGGTCCCGGGGTCACCTGCGGGAAGCATCATTTATaGCAAGCACAGGCACAGGCC +
Preference number: 2 (lower is better)
Translates to: APCCTLMRGGTSGPGVTCGKHHL*QAQAQA
Trigger: GGCCTGTGCCTGTGCTTGTCATAAATGATGCTTCCC...GCAGGTGACCCCGGGACCAGATGTCCCTCCCCTCATGAGCGTGCAACAGGGAGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000336990.8
ENST00000589565.1
3UTR-3UTR TCA 90 bp GGGGAGGGACATCTGGTCCCGGGGTCACCTGCGACCCGCGATCAGTCCAGCCTAAAGCATCACCATTTATaGCAAGCACAGGCACAGGCC +
Preference number: 2 (lower is better)
Translates to: GEGHLVPGSPATRDQSSLKHHHL*QAQAQA
Trigger: GGCCTGTGCCTGTGCTTGTCATAAATGGTGATGCTT...TAGGCTGGACTGATCGCGGGTCGCAGGTGACCCCGGGACCAGATGTCCCTCCCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000440960.6
ENST00000587735.1
ENST00000590956.5
ENST00000592149.5
3UTR-3UTR GCA 90 bp GGCAGCTTGCGGGAGGCCTTTACCCTTCAACGGACTCCAGACTCCTGTACTCTTGGGGCTGCTCCCTGTTaGACGCTCATGAGGGGAGGG +
Preference number: 2 (lower is better)
Translates to: GSLREAFTLQRTPDSCTLGAAPC*TLMRGG
Trigger: CCCTCCCCTCATGAGCGTGCAACAGGGAGCAGCCCC...AAGAGTACAGGAGTCTGGAGTCCGTTGAAGGGTAAAGGCCTCCCGCAAGCTGCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000336990.8
ENST00000440960.6
ENST00000587735.1
ENST00000592149.5
3UTR-3UTR CCA 90 bp GGCTGGGGCTGCTCCCTGTTGCACGCTCATGAGGGGAGGGACATCTGGTCCCGGGAGCACGGTCATTTCTaGGTTCTCTGGATGAGGTGT +
Preference number: 2 (lower is better)
Translates to: GWGCSLLHAHEGRDIWSREHGHF*VLWMRC
Trigger: ACACCTCATCCAGAGAACCCAGAAATGACCGTGCTC...CCGGGACCAGATGTCCCTCCCCTCATGAGCGTGCAACAGGGAGCAGCCCCAGCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000589565.1
3UTR-3UTR TCA 90 bp CATGAGGGGAGGGACATCTGGTCCCGGGGTCACCTGCGACCCGCGATCAGTCCAAAGCATCACCATTTATaGCAAGCACAGGCACAGGCC +
Preference number: 2 (lower is better)
Translates to: HEGRDIWSRGHLRPAISPKHHHL*QAQAQA
Trigger: GGCCTGTGCCTGTGCTTGTCATAAATGGTGATGCTT...TGGACTGATCGCGGGTCGCAGGTGACCCCGGGACCAGATGTCCCTCCCCTCATG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000440960.6
ENST00000587735.1
ENST00000590956.5
ENST00000592149.5
3UTR-3UTR GCA 90 bp TTTGCGAAAAAGAGCCGACTGGCAGCTTGCGGGAGGCCTTTACCCTTCAACGGAGGGGCTGCTCCCTGTTaGACGCTCATGAGGGGAGGG +
Preference number: 2 (lower is better)
Translates to: FAKKSRLAACGRPLPFNGGAAPC*TLMRGG
Trigger: CCCTCCCCTCATGAGCGTGCAACAGGGAGCAGCCCC...TCCGTTGAAGGGTAAAGGCCTCCCGCAAGCTGCCAGTCGGCTCTTTTTCGCAAA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENST00000336990.8
ENST00000440960.6
ENST00000587735.1
ENST00000592149.5
3UTR-3UTR CCA 90 bp AACAGGAACTCAAACCTTGGATACTATGAGGGATCCATGGCCTCCAGCCCCAGCAGGGAGAGAAGGGGCTaGGCCACTGCGGCAGGCAGG +
Preference number: 2 (lower is better)
Translates to: NRNSNLGYYEGSMASSPSRERRG*ATAAGR
Trigger: CCTGCCTGCCGCAGTGGCCCAGCCCCTTCTCTCCCT...GCTGGGGCTGGAGGCCATGGATCCCTCATAGTATCCAAGGTTTGAGTTCCTGTT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000336990.8
ENST00000440960.6
ENST00000587735.1
ENST00000592149.5
3UTR-3UTR TCA 90 bp TCGCAGCCAGACGTGCTTTTCCGTCCCGTCCTTGCTCGTCCTCTCCTCACCTCCGGGAAGCATCATTTATaGCAAGCACAGGCACAGGCC +
Preference number: 2 (lower is better)
Translates to: SQPDVLFRPVLARPLLTSGKHHL*QAQAQA
Trigger: GGCCTGTGCCTGTGCTTGTCATAAATGATGCTTCCC...GGAGGTGAGGAGAGGACGAGCAAGGACGGGACGGAAAAGCACGTCTGGCTGCGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000336990.8
ENST00000589565.1
3UTR-3UTR CCA 90 bp CTGGCAGCTTGCGGGAGGCCTTTACCCTTCAACGGACTCCAGACTCCTGTACTCACCCGCCAGCGTTTGTaGAGGAGCCTAAGTGGAGGA +
Preference number: 2 (lower is better)
Translates to: LAACGRPLPFNGLQTPVLTRQRL*RSLSGG
Trigger: TCCTCCACTTAGGCTCCTCCACAAACGCTGGCGGGT...GAGTACAGGAGTCTGGAGTCCGTTGAAGGGTAAAGGCCTCCCGCAAGCTGCCAG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000336990.8
ENST00000440960.6
ENST00000587735.1
ENST00000592149.5
3UTR-3UTR CCA 90 bp AAGGCGAAAAACAGGAACTCAAACCTTGGATACTATGAGGGATCCATGGCCTCCCCCCGGGCACGGCAGTaGCAGACTGGAGGGGGCTGG +
Preference number: 2 (lower is better)
Translates to: KAKNRNSNLGYYEGSMASPRARQ*QTGGGW
Trigger: CCAGCCCCCTCCAGTCTGCCACTGCCGTGCCCGGGG...GGAGGCCATGGATCCCTCATAGTATCCAAGGTTTGAGTTCCTGTTTTTCGCCTT
59% GC, longest homopolymer 6 nt, total homopolymer stretches 16 nt.
Matches the following 4 transcripts:
ENST00000336990.8
ENST00000440960.6
ENST00000587735.1
ENST00000592149.5
3UTR-3UTR CCA 90 bp CCTAAGGGACACGGGCGAGGGCCTCGAGCCCTCCATCCACGCAGACGGCGGCGGTTCTTTCCTTTCTTCTaGGAAGCATCACCATTTATG +
Preference number: 2 (lower is better)
Translates to: PKGHGRGPRALHPRRRRRFFPFF*EASPFM
Trigger: CATAAATGGTGATGCTTCCCAGAAGAAAGGAAAGAA...CCGCCGCCGTCTGCGTGGATGGAGGGCTCGAGGCCCTCGCCCGTGTCCCTTAGG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000440960.6
ENST00000587735.1
ENST00000590956.5
ENST00000592149.5
3UTR-3UTR CCA 90 bp CCGCCCCTAAGGGACACGGGCGAGGGCCTCGAGCCCTCCATCCACGCAGACGGCTTCTTTCCTTTCTTCTaGGAAGCATCACCATTTATG +
Preference number: 2 (lower is better)
Translates to: PPLRDTGEGLEPSIHADGFFPFF*EASPFM
Trigger: CATAAATGGTGATGCTTCCCAGAAGAAAGGAAAGAA...GCCGTCTGCGTGGATGGAGGGCTCGAGGCCCTCGCCCGTGTCCCTTAGGGGCGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000440960.6
ENST00000587735.1
ENST00000590956.5
ENST00000592149.5
3UTR-3UTR CCA 90 bp AACAGGAACTCAAACCTTGGATACTATGAGGGATCCATGGCCTCCAGCCCCAGCCAGACTGGAGGGGGCTaGCACAGCCTGCAGAAAGGG +
Preference number: 2 (lower is better)
Translates to: NRNSNLGYYEGSMASSPSQTGGG*HSLQKG
Trigger: CCCTTTCTGCAGGCTGTGCCAGCCCCCTCCAGTCTG...GCTGGGGCTGGAGGCCATGGATCCCTCATAGTATCCAAGGTTTGAGTTCCTGTT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000336990.8
ENST00000440960.6
ENST00000587735.1
ENST00000592149.5
3UTR-3UTR CCA 90 bp AAAAACAGGAACTCAAACCTTGGATACTATGAGGGATCCATGGCCTCCAGCCCCGTGGAGGAGCCTAAGTaGAGGACAGCGTGGGCGGGC +
Preference number: 2 (lower is better)
Translates to: KNRNSNLGYYEGSMASSPVEEPK*RTAWAG
Trigger: GCCCGCCCACGCTGTCCTCCACTTAGGCTCCTCCAC...GGGGCTGGAGGCCATGGATCCCTCATAGTATCCAAGGTTTGAGTTCCTGTTTTT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000336990.8
ENST00000440960.6
ENST00000587735.1
ENST00000592149.5
3UTR-3UTR CCA 90 bp TTGCACGCTCATGAGGGGAGGGACATCTGGTCCCGGGGTCACCTGCGACCCGCGTTCTTTCCTTTCTTCTaGGAAGCATCACCATTTATG +
Preference number: 2 (lower is better)
Translates to: LHAHEGRDIWSRGHLRPAFFPFF*EASPFM
Trigger: CATAAATGGTGATGCTTCCCAGAAGAAAGGAAAGAA...CGCGGGTCGCAGGTGACCCCGGGACCAGATGTCCCTCCCCTCATGAGCGTGCAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000440960.6
ENST00000587735.1
ENST00000590956.5
ENST00000592149.5
3UTR-3UTR CCA 90 bp CCGGCCCTGTGTGCCCTCGCAGCCAGACGTGCTTTTCCGTCCCGTCCTTGCTCGTTCTTTCCTTTCTTCTaGGAAGCATCATTTATGACA +
Preference number: 2 (lower is better)
Translates to: PALCALAARRAFPSRPCSFFPFF*EASFMT
Trigger: TGTCATAAATGATGCTTCCCAGAAGAAAGGAAAGAA...CGAGCAAGGACGGGACGGAAAAGCACGTCTGGCTGCGAGGGCACACAGGGCCGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000336990.8
ENST00000589565.1
3UTR-3UTR CCA 90 bp TTTAAAGATGGTGGGGAAAAGACCTTTGGTCGTTGTCCCTCAAACACTCACAAAAGGGAGAGAAGGGGCTaGGCCACTGCGGCAGGCAGG +
Preference number: 2 (lower is better)
Translates to: FKDGGEKTFGRCPSNTHKRERRG*ATAAGR
Trigger: CCTGCCTGCCGCAGTGGCCCAGCCCCTTCTCTCCCT...TTTGTGAGTGTTTGAGGGACAACGACCAAAGGTCTTTTCCCCACCATCTTTAAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 4 transcripts:
ENST00000336990.8
ENST00000440960.6
ENST00000587735.1
ENST00000592149.5
3UTR CAA 90 bp GGCCACACATACGCTTTCATAAGCACAGAAAACTTCTGGAAGGCTTaGCGAAAAAGAGCCGACTGGCAGCTTGCGGGAGGCCTTTACCCT +
Preference number: 2 (lower is better)
Translates to: GHTYAFISTENFWKA*RKRADWQLAGGLYP
Trigger: AGGGTAAAGGCCTCCCGCAAGCTGCCAGTCGGCTCTTTTTCGCAAAGCCTTCCAGAAGTTTTCTGTGCTTATGAAAGCGTATGTGTGGCC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000336990.8
ENST00000440960.6
ENST00000587735.1
ENST00000592149.5
3UTR-3UTR TCA 90 bp GCGAAAAACAGGAACTCAAACCTTGGATACTATGAGGGATCCATGGCCTCCAGCAAGCATCACCATTTATaGCAAGCACAGGCACAGGCC +
Preference number: 2 (lower is better)
Translates to: AKNRNSNLGYYEGSMASSKHHHL*QAQAQA
Trigger: GGCCTGTGCCTGTGCTTGTCATAAATGGTGATGCTT...GCTGGAGGCCATGGATCCCTCATAGTATCCAAGGTTTGAGTTCCTGTTTTTCGC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000440960.6
ENST00000587735.1
ENST00000592149.5
3UTR-3UTR CCA 90 bp TTGGATACTATGAGGGATCCATGGCCTCCAGCCCCAGCAGGTGAGGCTGGCAAGTTCTTTCCTTTCTTCTaGGAAGCATCATTTATGACA +
Preference number: 2 (lower is better)
Translates to: LDTMRDPWPPAPAGEAGKFFPFF*EASFMT
Trigger: TGTCATAAATGATGCTTCCCAGAAGAAAGGAAAGAA...CTTGCCAGCCTCACCTGCTGGGGCTGGAGGCCATGGATCCCTCATAGTATCCAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000336990.8
3UTR-3UTR CCA 90 bp GCGAAAAACAGGAACTCAAACCTTGGATACTATGAGGGATCCATGGCCTCCAGCTTCTTTCCTTTCTTCTaGGAAGCATCACCATTTATG +
Preference number: 2 (lower is better)
Translates to: AKNRNSNLGYYEGSMASSFFPFF*EASPFM
Trigger: CATAAATGGTGATGCTTCCCAGAAGAAAGGAAAGAA...GCTGGAGGCCATGGATCCCTCATAGTATCCAAGGTTTGAGTTCCTGTTTTTCGC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000440960.6
ENST00000587735.1
ENST00000592149.5
3UTR CCA 72 bp GCGGCACACCCGCCAGCGTTTGTGGAGGAGCCTAAGTaGAGGACAGCGTGGGCGGGCGGGCGGGGGCGGCGC +
Preference number: 3 (lower is better)
Translates to: AAHPPAFVEEPK*RTAWAGGRGRR
Trigger: GCGCCGCCCCCGCCCGCCCGCCCACGCTGTCCTCCACTTAGGCTCCTCCACAAACGCTGGCGGGTGTGCCGC
76% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENST00000336990.8
ENST00000440960.6
ENST00000587735.1
ENST00000592149.5
3UTR CCA 72 bp GGGCCTCGAGCCCTCCATCCACGCAGACGGCGGCGGTaGGGCTGGCTGGGGCTGCTCCCTGTTGCACGCTCA +
Preference number: 3 (lower is better)
Translates to: GPRALHPRRRRR*GWLGLLPVARS
Trigger: TGAGCGTGCAACAGGGAGCAGCCCCAGCCAGCCCCACCGCCGCCGTCTGCGTGGATGGAGGGCTCGAGGCCC
74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENST00000336990.8
ENST00000440960.6
ENST00000587735.1
ENST00000589565.1
ENST00000590956.5
ENST00000592149.5
3UTR CCA 72 bp AGAGAAGGGGCTGGGCCACTGCGGCAGGCAGGACGATaGGCGCCGCCCCTAAGGGACACGGGCGAGGGCCTC +
Preference number: 3 (lower is better)
Translates to: REGAGPLRQAGR*APPLRDTGEGL
Trigger: GAGGCCCTCGCCCGTGTCCCTTAGGGGCGGCGCCCATCGTCCTGCCTGCCGCAGTGGCCCAGCCCCTTCTCT
74% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENST00000336990.8
ENST00000440960.6
ENST00000587735.1
ENST00000590956.5
ENST00000592149.5
3UTR CCA 72 bp CCAGCGTTTGTGGAGGAGCCTAAGTGGAGGACAGCGTaGGCGGGCGGGCGGGGGCGGCGCGGGTCACCTGCA +
Preference number: 3 (lower is better)
Translates to: PAFVEEPKWRTA*AGGRGRRGSPA
Trigger: TGCAGGTGACCCGCGCCGCCCCCGCCCGCCCGCCCACGCTGTCCTCCACTTAGGCTCCTCCACAAACGCTGG
74% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENST00000336990.8
ENST00000440960.6
ENST00000587735.1
ENST00000592149.5
3UTR CCA 72 bp GGCGCAGGATGTCCCCCGGGCACGGCAGTGGCAGACTaGAGGGGGCTGGCACAGCCTGCAGAAAGGGCCGGG +
Preference number: 3 (lower is better)
Translates to: GAGCPPGTAVAD*RGLAQPAERAG
Trigger: CCCGGCCCTTTCTGCAGGCTGTGCCAGCCCCCTCCAGTCTGCCACTGCCGTGCCCGGGGGACATCCTGCGCC
74% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENST00000336990.8
ENST00000440960.6
ENST00000587735.1
ENST00000592149.5
3UTR-3UTR CAA 90 bp GCCACTGCGGCAGGCAGGACGATGGGCGCCGCCCCTAAGGGACACGGGCGAGGGTGGGGCTGCTCCCTGTaGCACGCTCATGAGGGGAGG +
Preference number: 3 (lower is better)
Translates to: ATAAGRTMGAAPKGHGRGWGCSL*HAHEGR
Trigger: CCTCCCCTCATGAGCGTGCAACAGGGAGCAGCCCCA...CCCTCGCCCGTGTCCCTTAGGGGCGGCGCCCATCGTCCTGCCTGCCGCAGTGGC
72% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENST00000336990.8
ENST00000440960.6
ENST00000587735.1
ENST00000590956.5
ENST00000592149.5
3UTR CCA 72 bp CCCTCCATCCACGCAGACGGCGGCGGTGGGGCTGGCTaGGGCTGCTCCCTGTTGCACGCTCATGAGGGGAGG +
Preference number: 3 (lower is better)
Translates to: PSIHADGGGGAG*GCSLLHAHEGR
Trigger: CCTCCCCTCATGAGCGTGCAACAGGGAGCAGCCCCAGCCAGCCCCACCGCCGCCGTCTGCGTGGATGGAGGG
72% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENST00000336990.8
ENST00000440960.6
ENST00000587735.1
ENST00000589565.1
ENST00000590956.5
ENST00000592149.5
3UTR-3UTR CAA 90 bp CCCCTAAGGGACACGGGCGAGGGCCTCGAGCCCTCCATCCACGCAGACGGCGGCTGGGGCTGCTCCCTGTaGCACGCTCATGAGGGGAGG +
Preference number: 3 (lower is better)
Translates to: PLRDTGEGLEPSIHADGGWGCSL*HAHEGR
Trigger: CCTCCCCTCATGAGCGTGCAACAGGGAGCAGCCCCA...GCCGCCGTCTGCGTGGATGGAGGGCTCGAGGCCCTCGCCCGTGTCCCTTAGGGG
71% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 6 transcripts:
ENST00000336990.8
ENST00000440960.6
ENST00000587735.1
ENST00000589565.1
ENST00000590956.5
ENST00000592149.5
3UTR CCA 72 bp GGAGAGGCTGGAGGGCGGCACACCCGCCAGCGTTTGTaGAGGAGCCTAAGTGGAGGACAGCGTGGGCGGGCG +
Preference number: 3 (lower is better)
Translates to: GEAGGRHTRQRL*RSLSGGQRGRA
Trigger: CGCCCGCCCACGCTGTCCTCCACTTAGGCTCCTCCACAAACGCTGGCGGGTGTGCCGCCCTCCAGCCTCTCC
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000336990.8
ENST00000440960.6
ENST00000587735.1
ENST00000592149.5
3UTR-3UTR CAA 90 bp TCCCCGGCCCTGTGTGCCCTCGCAGCCAGACGTGCTTTTCCGTCCCGTCCTTGCTGGGGCTGCTCCCTGTaGCACGCTCATGAGGGGAGG +
Preference number: 3 (lower is better)
Translates to: SPALCALAARRAFPSRPCWGCSL*HAHEGR
Trigger: CCTCCCCTCATGAGCGTGCAACAGGGAGCAGCCCCA...GCAAGGACGGGACGGAAAAGCACGTCTGGCTGCGAGGGCACACAGGGCCGGGGA
68% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 6 transcripts:
ENST00000336990.8
ENST00000440960.6
ENST00000587735.1
ENST00000589565.1
ENST00000590956.5
ENST00000592149.5
3UTR-3UTR CAA 90 bp TTGCACGCTCATGAGGGGAGGGACATCTGGTCCCGGGGTCACCTGCGACCCGCGTGGGGCTGCTCCCTGTaGCACGCTCATGAGGGGAGG +
Preference number: 3 (lower is better)
Translates to: LHAHEGRDIWSRGHLRPAWGCSL*HAHEGR
Trigger: CCTCCCCTCATGAGCGTGCAACAGGGAGCAGCCCCA...CGCGGGTCGCAGGTGACCCCGGGACCAGATGTCCCTCCCCTCATGAGCGTGCAA
68% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 6 transcripts:
ENST00000336990.8
ENST00000440960.6
ENST00000587735.1
ENST00000589565.1
ENST00000590956.5
ENST00000592149.5
3UTR GCA 72 bp CTCCTCCCCGGCCCTGTGTGCCCTCGCAGCCAGACGTaGTTTTCCGTCCCGTCCTTGCTCGTCCTCTCCTCA +
Preference number: 3 (lower is better)
Translates to: LLPGPVCPRSQT*FSVPSLLVLSS
Trigger: TGAGGAGAGGACGAGCAAGGACGGGACGGAAAAGCACGTCTGGCTGCGAGGGCACACAGGGCCGGGGAGGAG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENST00000336990.8
ENST00000440960.6
ENST00000587735.1
ENST00000589565.1
ENST00000590956.5
ENST00000592149.5
3UTR GCA 72 bp CTCATGAGGGGAGGGACATCTGGTCCCGGGGTCACCTaGGACCCGCGATCAGTCCAGCCTAATCCTCCTCCC +
Preference number: 3 (lower is better)
Translates to: LMRGGTSGPGVT*DPRSVQPNPPP
Trigger: GGGAGGAGGATTAGGCTGGACTGATCGCGGGTCGCAGGTGACCCCGGGACCAGATGTCCCTCCCCTCATGAG
65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENST00000336990.8
ENST00000440960.6
ENST00000587735.1
ENST00000589565.1
ENST00000590956.5
ENST00000592149.5
3UTR CCA 72 bp TGCTCCCTGTTGCACGCTCATGAGGGGAGGGACATCTaGTCCCGGGGTCACCTGCGACCCGCGATCAGTCCA +
Preference number: 3 (lower is better)
Translates to: CSLLHAHEGRDI*SRGHLRPAISP
Trigger: TGGACTGATCGCGGGTCGCAGGTGACCCCGGGACCAGATGTCCCTCCCCTCATGAGCGTGCAACAGGGAGCA
65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENST00000336990.8
ENST00000440960.6
ENST00000587735.1
ENST00000589565.1
ENST00000590956.5
ENST00000592149.5
3UTR-3UTR CAA 90 bp CGACTGGCAGCTTGCGGGAGGCCTTTACCCTTCAACGGACTCCAGACTCCTGTACACACCCGCCAGCGTTaGTGGAGGAGCCTAAGTGGA +
Preference number: 3 (lower is better)
Translates to: RLAACGRPLPFNGLQTPVHTRQR*WRSLSG
Trigger: TCCACTTAGGCTCCTCCACAAACGCTGGCGGGTGTG...TACAGGAGTCTGGAGTCCGTTGAAGGGTAAAGGCCTCCCGCAAGCTGCCAGTCG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000336990.8
ENST00000440960.6
ENST00000587735.1
ENST00000592149.5
3UTR-3UTR CAA 90 bp ACTGGCAGCTTGCGGGAGGCCTTTACCCTTCAACGGACTCCAGACTCCTGTACTGCCCAGGAGAGCTGCTaGGTGATCTGCAGGACCGAG +
Preference number: 3 (lower is better)
Translates to: TGSLREAFTLQRTPDSCTAQESC*VICRTE
Trigger: CTCGGTCCTGCAGATCACCAAGCAGCTCTCCTGGGC...AGTACAGGAGTCTGGAGTCCGTTGAAGGGTAAAGGCCTCCCGCAAGCTGCCAGT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000336990.8
ENST00000440960.6
ENST00000587735.1
ENST00000592149.5
3UTR-3UTR CAA 90 bp GGCTGGGGCTGCTCCCTGTTGCACGCTCATGAGGGGAGGGACATCTGGTCCCGGCAGCCCACCCCTTCTTaGCATTGGATGATATCGTAT +
Preference number: 3 (lower is better)
Translates to: GWGCSLLHAHEGRDIWSRQPTPS*HWMISY
Trigger: ATACGATATCATCCAATGCAAAGAAGGGGTGGGCTG...CCGGGACCAGATGTCCCTCCCCTCATGAGCGTGCAACAGGGAGCAGCCCCAGCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000589565.1
3UTR-3UTR CAA 90 bp GGCTTTGCGAAAAAGAGCCGACTGGCAGCTTGCGGGAGGCCTTTACCCTTCAACGTGGGGAAAAGACCTTaGGTCGTTGTCCCTCAAACA +
Preference number: 3 (lower is better)
Translates to: GFAKKSRLAACGRPLPFNVGKRP*VVVPQT
Trigger: TGTTTGAGGGACAACGACCAAAGGTCTTTTCCCCAC...GTTGAAGGGTAAAGGCCTCCCGCAAGCTGCCAGTCGGCTCTTTTTCGCAAAGCC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENST00000336990.8
ENST00000440960.6
ENST00000587735.1
ENST00000592149.5
3UTR-3UTR CAA 90 bp TTCAGAGTGTTCAATTATCCACTCGATAGCAGCCCACCCCTTCTTTGCATTGGAAGTGATGATGGCTTCTaGTGTGAGCACGGTCATTTC +
Preference number: 3 (lower is better)
Translates to: FRVFNYPLDSSPPLLCIGSDDGF*CEHGHF
Trigger: GAAATGACCGTGCTCACACAAGAAGCCATCATCACT...TCCAATGCAAAGAAGGGGTGGGCTGCTATCGAGTGGATAATTGAACACTCTGAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000589565.1
CDS-3UTR GCA 90 bp AGCCTAAGTGGAGGACAGCGTGGGCGGGCGGGCGGGGGCGGCGCGGGTCACCTGAGCAGGCGCAAGCTGTaGAGGCGGCCGCGGCCGTCC +
Preference number: 4 (lower is better)
Translates to: SLSGGQRGRAGGGGAGHLSRRKL*RRPRPS
Trigger: GGACGGCCGCGGCCGCCTGCACAGCTTGCGCCTGCT...CAGGTGACCCGCGCCGCCCCCGCCCGCCCGCCCACGCTGTCCTCCACTTAGGCT
77% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000336990.8
ENST00000440960.6
ENST00000592149.5
CDS-3UTR GCA 90 bp CGAGGGGACGGGGGCGGAGAGGCTGGAGGGCGGCACACCCGCCAGCGTTTGTGGGCAGGGCGCGGGCTCTaGGATCCGGGCCGGGTGCTT +
Preference number: 4 (lower is better)
Translates to: RGDGGGEAGGRHTRQRLWAGRGL*DPGRVL
Trigger: AAGCACCCGGCCCGGATCGCAGAGCCCGCGCCCTGC...CCACAAACGCTGGCGGGTGTGCCGCCCTCCAGCCTCTCCGCCCCCGTCCCCTCG
76% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000336990.8
ENST00000440960.6
CDS-3UTR GCA 90 bp CGAGGGCCTCGAGCCCTCCATCCACGCAGACGGCGGCGGTGGGGCTGGCTGGGGCTCCCCGGCCCTGTGTaGCCTCGCAGCCAGACGTGC +
Preference number: 4 (lower is better)
Translates to: RGPRALHPRRRRRWGWLGLPGPV*PRSQTC
Trigger: GCACGTCTGGCTGCGAGGGCACACAGGGCCGGGGAG...CCCCAGCCAGCCCCACCGCCGCCGTCTGCGTGGATGGAGGGCTCGAGGCCCTCG
76% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 6 transcripts:
ENST00000336990.8
ENST00000440960.6
ENST00000587735.1
ENST00000589565.1
ENST00000590956.5
ENST00000592149.5
CDS-3UTR CCA 90 bp AGCCTAAGTGGAGGACAGCGTGGGCGGGCGGGCGGGGGCGGCGCGGGTCACCTGCGGCAGGCAGGACGATaGGCGCCGCCCCTAAGGGAC +
Preference number: 4 (lower is better)
Translates to: SLSGGQRGRAGGGGAGHLRQAGR*APPLRD
Trigger: GTCCCTTAGGGGCGGCGCCCATCGTCCTGCCTGCCG...CAGGTGACCCGCGCCGCCCCCGCCCGCCCGCCCACGCTGTCCTCCACTTAGGCT
76% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000336990.8
ENST00000440960.6
ENST00000587735.1
ENST00000592149.5
CDS-3UTR CCA 90 bp CGAGGGGACGGGGGCGGAGAGGCTGGAGGGCGGCACACCCGCCAGCGTTTGTGGCCCCGGGCACGGCAGTaGCAGACTGGAGGGGGCTGG +
Preference number: 4 (lower is better)
Translates to: RGDGGGEAGGRHTRQRLWPRARQ*QTGGGW
Trigger: CCAGCCCCCTCCAGTCTGCCACTGCCGTGCCCGGGG...CCACAAACGCTGGCGGGTGTGCCGCCCTCCAGCCTCTCCGCCCCCGTCCCCTCG
76% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 4 transcripts:
ENST00000336990.8
ENST00000440960.6
ENST00000587735.1
ENST00000592149.5
CDS-3UTR CCA 90 bp GCTGGGCCACTGCGGCAGGCAGGACGATGGGCGCCGCCCCTAAGGGACACGGGCCCCCGGGCACGGCAGTaGCAGACTGGAGGGGGCTGG +
Preference number: 4 (lower is better)
Translates to: AGPLRQAGRWAPPLRDTGPRARQ*QTGGGW
Trigger: CCAGCCCCCTCCAGTCTGCCACTGCCGTGCCCGGGG...GCCCGTGTCCCTTAGGGGCGGCGCCCATCGTCCTGCCTGCCGCAGTGGCCCAGC
76% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 4 transcripts:
ENST00000336990.8
ENST00000440960.6
ENST00000587735.1
ENST00000592149.5
CDS-3UTR TCA 90 bp CCGCCCCTAAGGGACACGGGCGAGGGCCTCGAGCCCTCCATCCACGCAGACGGCGGCCAGCAGCAGATGTaGGGCCCGGAGCAGCCGCGG +
Preference number: 4 (lower is better)
Translates to: PPLRDTGEGLEPSIHADGGQQQM*GPEQPR
Trigger: CCGCGGCTGCTCCGGGCCTCACATCTGCTGCTGGCC...GCCGTCTGCGTGGATGGAGGGCTCGAGGCCCTCGCCCGTGTCCCTTAGGGGCGG
74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000336990.8
ENST00000440960.6
ENST00000587735.1
ENST00000592149.5
CDS-3UTR GCA 90 bp AGGAGCCTAAGTGGAGGACAGCGTGGGCGGGCGGGCGGGGGCGGCGCGGGTCACGGTCCCGGGGTCACCTaGGACCCGCGATCAGTCCAG +
Preference number: 4 (lower is better)
Translates to: RSLSGGQRGRAGGGGAGHGPGVT*DPRSVQ
Trigger: CTGGACTGATCGCGGGTCGCAGGTGACCCCGGGACC...GTGACCCGCGCCGCCCCCGCCCGCCCGCCCACGCTGTCCTCCACTTAGGCTCCT
74% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000336990.8
ENST00000440960.6
ENST00000587735.1
ENST00000592149.5
CDS-3UTR GCA 90 bp GGGGCTGGGCCACTGCGGCAGGCAGGACGATGGGCGCCGCCCCTAAGGGACACGCGCCGGCTCAGCACCTaGACGCCTCGGCACCTGGCA +
Preference number: 4 (lower is better)
Translates to: GAGPLRQAGRWAPPLRDTRRLST*TPRHLA
Trigger: TGCCAGGTGCCGAGGCGTGCAGGTGCTGAGCCGGCG...CGTGTCCCTTAGGGGCGGCGCCCATCGTCCTGCCTGCCGCAGTGGCCCAGCCCC
74% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000592149.5
CDS-3UTR TCA 90 bp CCCCTAAGGGACACGGGCGAGGGCCTCGAGCCCTCCATCCACGCAGACGGCGGCGCATGGCCGCCTGGATaGCCGTGTCCCACGGGTGGC +
Preference number: 4 (lower is better)
Translates to: PLRDTGEGLEPSIHADGGAWPPG*PCPTGG
Trigger: GCCACCCGTGGGACACGGTCATCCAGGCGGCCATGC...GCCGCCGTCTGCGTGGATGGAGGGCTCGAGGCCCTCGCCCGTGTCCCTTAGGGG
73% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000336990.8
ENST00000440960.6
ENST00000592149.5
CDS-3UTR GCA 90 bp CCACTGCGGCAGGCAGGACGATGGGCGCCGCCCCTAAGGGACACGGGCGAGGGCGGTCCCGGGGTCACCTaGGACCCGCGATCAGTCCAG +
Preference number: 4 (lower is better)
Translates to: PLRQAGRWAPPLRDTGEGGPGVT*DPRSVQ
Trigger: CTGGACTGATCGCGGGTCGCAGGTGACCCCGGGACC...GCCCTCGCCCGTGTCCCTTAGGGGCGGCGCCCATCGTCCTGCCTGCCGCAGTGG
73% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENST00000336990.8
ENST00000440960.6
ENST00000587735.1
ENST00000590956.5
ENST00000592149.5
CDS-3UTR GCA 90 bp CGAGGGCCTCGAGCCCTCCATCCACGCAGACGGCGGCGGTGGGGCTGGCTGGGGGGGGCTGCTCCCTGTTaGACGCTCATGAGGGGAGGG +
Preference number: 4 (lower is better)
Translates to: RGPRALHPRRRRRWGWLGGAAPC*TLMRGG
Trigger: CCCTCCCCTCATGAGCGTGCAACAGGGAGCAGCCCC...CCCCAGCCAGCCCCACCGCCGCCGTCTGCGTGGATGGAGGGCTCGAGGCCCTCG
73% GC, longest homopolymer 8 nt, total homopolymer stretches 16 nt.
Matches the following 6 transcripts:
ENST00000336990.8
ENST00000440960.6
ENST00000587735.1
ENST00000589565.1
ENST00000590956.5
ENST00000592149.5
CDS-3UTR TCA 90 bp AGGGGCTGGGCCACTGCGGCAGGCAGGACGATGGGCGCCGCCCCTAAGGGACACGCCCCCACTCGGTGCTaGGCAGGCGCAAGCTGTGCA +
Preference number: 4 (lower is better)
Translates to: RGWATAAGRTMGAAPKGHAPTRC*AGASCA
Trigger: TGCACAGCTTGCGCCTGCTCAGCACCGAGTGGGGGC...GTGTCCCTTAGGGGCGGCGCCCATCGTCCTGCCTGCCGCAGTGGCCCAGCCCCT
72% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENST00000336990.8
ENST00000440960.6
ENST00000592149.5
CDS-3UTR TCA 90 bp GTCCCGGGGTCACCTGCGACCCGCGATCAGTCCAGCCTAATCCTCCTCCCCGGCGGCCAGCAGCAGATGTaGGGCCCGGAGCAGCCGCGG +
Preference number: 4 (lower is better)
Translates to: VPGSPATRDQSSLILLPGGQQQM*GPEQPR
Trigger: CCGCGGCTGCTCCGGGCCTCACATCTGCTGCTGGCC...GCCGGGGAGGAGGATTAGGCTGGACTGATCGCGGGTCGCAGGTGACCCCGGGAC
72% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000336990.8
ENST00000440960.6
ENST00000587735.1
ENST00000592149.5
CDS-3UTR TCA 90 bp GCAGGACGATGGGCGCCGCCCCTAAGGGACACGGGCGAGGGCCTCGAGCCCTCCAGCCCTCTCCCCGCATaGGGAGCCTCGTCAGGAGAG +
Preference number: 4 (lower is better)
Translates to: AGRWAPPLRDTGEGLEPSSPLPA*GASSGE
Trigger: CTCTCCTGACGAGGCTCCTCATGCGGGGAGAGGGCT...GGAGGGCTCGAGGCCCTCGCCCGTGTCCCTTAGGGGCGGCGCCCATCGTCCTGC
72% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000336990.8
ENST00000440960.6
ENST00000587735.1
ENST00000592149.5
CDS-3UTR GCA 90 bp GGGACGGGGGCGGAGAGGCTGGAGGGCGGCACACCCGCCAGCGTTTGTGGAGGAGCTCCAGATCTTCATTaGCGCCGGCGCAGGGCGCGG +
Preference number: 4 (lower is better)
Translates to: GTGAERLEGGTPASVCGGAPDLH*RRRRAR
Trigger: CCGCGCCCTGCGCCGGCGGCAATGAAGATCTGGAGC...TCCTCCACAAACGCTGGCGGGTGTGCCGCCCTCCAGCCTCTCCGCCCCCGTCCC
72% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000336990.8
ENST00000440960.6
CDS-3UTR GCA 90 bp CGAGGGGACGGGGGCGGAGAGGCTGGAGGGCGGCACACCCGCCAGCGTTTGTGGGGGGCTGCTCCCTGTTaGACGCTCATGAGGGGAGGG +
Preference number: 4 (lower is better)
Translates to: RGDGGGEAGGRHTRQRLWGAAPC*TLMRGG
Trigger: CCCTCCCCTCATGAGCGTGCAACAGGGAGCAGCCCC...CCACAAACGCTGGCGGGTGTGCCGCCCTCCAGCCTCTCCGCCCCCGTCCCCTCG
72% GC, longest homopolymer 6 nt, total homopolymer stretches 19 nt.
Matches the following 4 transcripts:
ENST00000336990.8
ENST00000440960.6
ENST00000587735.1
ENST00000592149.5
CDS-3UTR GCA 90 bp AGGGCCTCGAGCCCTCCATCCACGCAGACGGCGGCGGTGGGGCTGGCTGGGGCTGGGGCTGCTCCCTGTTaGACGCTCATGAGGGGAGGG +
Preference number: 4 (lower is better)
Translates to: RASSPPSTQTAAVGLAGAGAAPC*TLMRGG
Trigger: CCCTCCCCTCATGAGCGTGCAACAGGGAGCAGCCCC...AGCCCCAGCCAGCCCCACCGCCGCCGTCTGCGTGGATGGAGGGCTCGAGGCCCT
72% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 6 transcripts:
ENST00000336990.8
ENST00000440960.6
ENST00000587735.1
ENST00000589565.1
ENST00000590956.5
ENST00000592149.5
CDS-3UTR GCA 90 bp TTGTGGAGGAGCCTAAGTGGAGGACAGCGTGGGCGGGCGGGCGGGGGCGGCGCGGGGGCTGGCTGGGGCTaGTCCCTGTTGCACGCTCAT +
Preference number: 4 (lower is better)
Translates to: LWRSLSGGQRGRAGGGGAGAGWG*SLLHAH
Trigger: ATGAGCGTGCAACAGGGAGCAGCCCCAGCCAGCCCC...CGCGCCGCCCCCGCCCGCCCGCCCACGCTGTCCTCCACTTAGGCTCCTCCACAA
72% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 4 transcripts:
ENST00000336990.8
ENST00000440960.6
ENST00000587735.1
ENST00000592149.5
CDS-3UTR CCA 90 bp CGAGGGGACGGGGGCGGAGAGGCTGGAGGGCGGCACACCCGCCAGCGTTTGTGGTTGCGCATGGCCGCCTaGATGACCGTGTCCCACGGG +
Preference number: 4 (lower is better)
Translates to: RGDGGGEAGGRHTRQRLWLRMAA*MTVSHG
Trigger: CCCGTGGGACACGGTCATCCAGGCGGCCATGCGCAA...CCACAAACGCTGGCGGGTGTGCCGCCCTCCAGCCTCTCCGCCCCCGTCCCCTCG
72% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000336990.8
ENST00000440960.6
ENST00000592149.5
CDS-3UTR CCA 90 bp GGGACGGGGGCGGAGAGGCTGGAGGGCGGCACACCCGCCAGCGTTTGTGGAGGATCGCTCTCACGAGGCTaGGCAGCCCCCACTCGGTGC +
Preference number: 4 (lower is better)
Translates to: GTGAERLEGGTPASVCGGSLSRG*AAPTRC
Trigger: GCACCGAGTGGGGGCTGCCCAGCCTCGTGAGAGCGA...TCCTCCACAAACGCTGGCGGGTGTGCCGCCCTCCAGCCTCTCCGCCCCCGTCCC
72% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENST00000336990.8
ENST00000440960.6
ENST00000592149.5
CDS-3UTR TCA 90 bp CCGGCCCTGTGTGCCCTCGCAGCCAGACGTGCTTTTCCGTCCCGTCCTTGCTCGGGCCAGCAGCAGATGTaGGGCCCGGAGCAGCCGCGG +
Preference number: 4 (lower is better)
Translates to: PALCALAARRAFPSRPCSGQQQM*GPEQPR
Trigger: CCGCGGCTGCTCCGGGCCTCACATCTGCTGCTGGCC...CGAGCAAGGACGGGACGGAAAAGCACGTCTGGCTGCGAGGGCACACAGGGCCGG
71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000336990.8
ENST00000440960.6
ENST00000587735.1
ENST00000592149.5
CDS-3UTR GCA 90 bp GGGCGAGGGCCTCGAGCCCTCCATCCACGCAGACGGCGGCGGTGGGGCTGGCTGCCTCGCAGCCAGACGTaGTTTTCCGTCCCGTCCTTG +
Preference number: 4 (lower is better)
Translates to: GRGPRALHPRRRRRWGWLPRSQT*FSVPSL
Trigger: CAAGGACGGGACGGAAAAGCACGTCTGGCTGCGAGG...CAGCCAGCCCCACCGCCGCCGTCTGCGTGGATGGAGGGCTCGAGGCCCTCGCCC
71% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENST00000336990.8
ENST00000440960.6
ENST00000587735.1
ENST00000589565.1
ENST00000590956.5
ENST00000592149.5
CDS-3UTR GCA 90 bp GCCCCTAAGGGACACGGGCGAGGGCCTCGAGCCCTCCATCCACGCAGACGGCGGGGGGCTGCTCCCTGTTaGACGCTCATGAGGGGAGGG +
Preference number: 4 (lower is better)
Translates to: APKGHGRGPRALHPRRRRGAAPC*TLMRGG
Trigger: CCCTCCCCTCATGAGCGTGCAACAGGGAGCAGCCCC...CCGCCGTCTGCGTGGATGGAGGGCTCGAGGCCCTCGCCCGTGTCCCTTAGGGGC
71% GC, longest homopolymer 6 nt, total homopolymer stretches 14 nt.
Matches the following 6 transcripts:
ENST00000336990.8
ENST00000440960.6
ENST00000587735.1
ENST00000589565.1
ENST00000590956.5
ENST00000592149.5
CDS-3UTR GCA 90 bp GCGCCGCCCCTAAGGGACACGGGCGAGGGCCTCGAGCCCTCCATCCACGCAGACGGGGCTGGCTGGGGCTaGTCCCTGTTGCACGCTCAT +
Preference number: 4 (lower is better)
Translates to: APPLRDTGEGLEPSIHADGAGWG*SLLHAH
Trigger: ATGAGCGTGCAACAGGGAGCAGCCCCAGCCAGCCCC...GTCTGCGTGGATGGAGGGCTCGAGGCCCTCGCCCGTGTCCCTTAGGGGCGGCGC
71% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 6 transcripts:
ENST00000336990.8
ENST00000440960.6
ENST00000587735.1
ENST00000589565.1
ENST00000590956.5
ENST00000592149.5
CDS-3UTR GCA 90 bp GGCAGGACGATGGGCGCCGCCCCTAAGGGACACGGGCGAGGGCCTCGAGCCCTCAGCTGCTTGGTGATCTaGAGGACCGAGGGGACGGGG +
Preference number: 4 (lower is better)
Translates to: GRTMGAAPKGHGRGPRALSCLVI*RTEGTG
Trigger: CCCCGTCCCCTCGGTCCTGCAGATCACCAAGCAGCT...GAGGGCTCGAGGCCCTCGCCCGTGTCCCTTAGGGGCGGCGCCCATCGTCCTGCC
71% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000336990.8
ENST00000440960.6
ENST00000587735.1
ENST00000592149.5
CDS-3UTR CCA 90 bp GGGGGCGGAGAGGCTGGAGGGCGGCACACCCGCCAGCGTTTGTGGAGGAGCCTAAGGGAGAGAAGGGGCTaGGCCACTGCGGCAGGCAGG +
Preference number: 4 (lower is better)
Translates to: GGGEAGGRHTRQRLWRSLRERRG*ATAAGR
Trigger: CCTGCCTGCCGCAGTGGCCCAGCCCCTTCTCTCCCT...TAGGCTCCTCCACAAACGCTGGCGGGTGTGCCGCCCTCCAGCCTCTCCGCCCCC
71% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000336990.8
ENST00000440960.6
ENST00000587735.1
ENST00000592149.5
CDS-3UTR CCA 90 bp AGAAGGGGCTGGGCCACTGCGGCAGGCAGGACGATGGGCGCCGCCCCTAAGGGAAGGGAGAGAAGGGGCTaGGCCACTGCGGCAGGCAGG +
Preference number: 4 (lower is better)
Translates to: RRGWATAAGRTMGAAPKGRERRG*ATAAGR
Trigger: CCTGCCTGCCGCAGTGGCCCAGCCCCTTCTCTCCCT...TCCCTTAGGGGCGGCGCCCATCGTCCTGCCTGCCGCAGTGGCCCAGCCCCTTCT
71% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENST00000336990.8
ENST00000440960.6
ENST00000587735.1
ENST00000590956.5
ENST00000592149.5
CDS-3UTR CCA 90 bp GCCCCTAAGGGACACGGGCGAGGGCCTCGAGCCCTCCATCCACGCAGACGGCGGGTGGAGGAGCCTAAGTaGAGGACAGCGTGGGCGGGC +
Preference number: 4 (lower is better)
Translates to: APKGHGRGPRALHPRRRRVEEPK*RTAWAG
Trigger: GCCCGCCCACGCTGTCCTCCACTTAGGCTCCTCCAC...CCGCCGTCTGCGTGGATGGAGGGCTCGAGGCCCTCGCCCGTGTCCCTTAGGGGC
71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000336990.8
ENST00000440960.6
ENST00000587735.1
ENST00000592149.5
CDS-3UTR CCA 90 bp ATGGGCGCCGCCCCTAAGGGACACGGGCGAGGGCCTCGAGCCCTCCATCCACGCGTGGAGGAGCCTAAGTaGAGGACAGCGTGGGCGGGC +
Preference number: 4 (lower is better)
Translates to: MGAAPKGHGRGPRALHPRVEEPK*RTAWAG
Trigger: GCCCGCCCACGCTGTCCTCCACTTAGGCTCCTCCAC...GCGTGGATGGAGGGCTCGAGGCCCTCGCCCGTGTCCCTTAGGGGCGGCGCCCAT
71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000336990.8
ENST00000440960.6
ENST00000587735.1
ENST00000592149.5
CDS-3UTR CCA 90 bp AGGGCCTCGAGCCCTCCATCCACGCAGACGGCGGCGGTGGGGCTGGCTGGGGCTCAGACTGGAGGGGGCTaGCACAGCCTGCAGAAAGGG +
Preference number: 4 (lower is better)
Translates to: RASSPPSTQTAAVGLAGAQTGGG*HSLQKG
Trigger: CCCTTTCTGCAGGCTGTGCCAGCCCCCTCCAGTCTG...AGCCCCAGCCAGCCCCACCGCCGCCGTCTGCGTGGATGGAGGGCTCGAGGCCCT
71% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENST00000336990.8
ENST00000440960.6
ENST00000587735.1
ENST00000592149.5
3UTR CAA 72 bp GGCGGAGAGGCTGGAGGGCGGCACACCCGCCAGCGTTaGTGGAGGAGCCTAAGTGGAGGACAGCGTGGGCGG +
Preference number: 4 (lower is better)
Translates to: GGEAGGRHTRQR*WRSLSGGQRGR
Trigger: CCGCCCACGCTGTCCTCCACTTAGGCTCCTCCACAAACGCTGGCGGGTGTGCCGCCCTCCAGCCTCTCCGCC
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000336990.8
ENST00000440960.6
ENST00000587735.1
ENST00000592149.5
CDS-3UTR TCA 90 bp GGCAGGACGATGGGCGCCGCCCCTAAGGGACACGGGCGAGGGCCTCGAGCCCTCCCTGTTGCACGCTCATaGGGGGAGGGACATCTGGTC +
Preference number: 4 (lower is better)
Translates to: GRTMGAAPKGHGRGPRALPVARS*GEGHLV
Trigger: GACCAGATGTCCCTCCCCTCATGAGCGTGCAACAGG...GAGGGCTCGAGGCCCTCGCCCGTGTCCCTTAGGGGCGGCGCCCATCGTCCTGCC
70% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 6 transcripts:
ENST00000336990.8
ENST00000440960.6
ENST00000587735.1
ENST00000589565.1
ENST00000590956.5
ENST00000592149.5
CDS-3UTR TCA 90 bp CCACTGCGGCAGGCAGGACGATGGGCGCCGCCCCTAAGGGACACGGGCGAGGGCAGGAGAGCTGCTTGGTaGTCTGCAGGACCGAGGGGA +
Preference number: 4 (lower is better)
Translates to: PLRQAGRWAPPLRDTGEGRRAAW*SAGPRG
Trigger: TCCCCTCGGTCCTGCAGATCACCAAGCAGCTCTCCT...GCCCTCGCCCGTGTCCCTTAGGGGCGGCGCCCATCGTCCTGCCTGCCGCAGTGG
70% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000336990.8
ENST00000440960.6
ENST00000587735.1
ENST00000592149.5
CDS-3UTR TCA 90 bp CCCGGGGTCACCTGCGACCCGCGATCAGTCCAGCCTAATCCTCCTCCCCGGCCCAGCCCTCTCCCCGCATaGGGAGCCTCGTCAGGAGAG +
Preference number: 4 (lower is better)
Translates to: PGVTCDPRSVQPNPPPRPSPLPA*GASSGE
Trigger: CTCTCCTGACGAGGCTCCTCATGCGGGGAGAGGGCT...GGGCCGGGGAGGAGGATTAGGCTGGACTGATCGCGGGTCGCAGGTGACCCCGGG
70% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENST00000336990.8
ENST00000440960.6
ENST00000587735.1
ENST00000592149.5
CDS-3UTR GCA 90 bp GGGGCTGGGCCACTGCGGCAGGCAGGACGATGGGCGCCGCCCCTAAGGGACACGCCTCGCAGCCAGACGTaGTTTTCCGTCCCGTCCTTG +
Preference number: 4 (lower is better)
Translates to: GAGPLRQAGRWAPPLRDTPRSQT*FSVPSL
Trigger: CAAGGACGGGACGGAAAAGCACGTCTGGCTGCGAGG...CGTGTCCCTTAGGGGCGGCGCCCATCGTCCTGCCTGCCGCAGTGGCCCAGCCCC
70% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENST00000336990.8
ENST00000440960.6
ENST00000587735.1
ENST00000590956.5
ENST00000592149.5
CDS-3UTR GCA 90 bp GGCGGAGAGGCTGGAGGGCGGCACACCCGCCAGCGTTTGTGGAGGAGCCTAAGTCTCCCCGGCCCTGTGTaGCCTCGCAGCCAGACGTGC +
Preference number: 4 (lower is better)
Translates to: GGEAGGRHTRQRLWRSLSLPGPV*PRSQTC
Trigger: GCACGTCTGGCTGCGAGGGCACACAGGGCCGGGGAG...ACTTAGGCTCCTCCACAAACGCTGGCGGGTGTGCCGCCCTCCAGCCTCTCCGCC
70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000336990.8
ENST00000440960.6
ENST00000587735.1
ENST00000592149.5
CDS-3UTR GCA 90 bp CCTAAGGGACACGGGCGAGGGCCTCGAGCCCTCCATCCACGCAGACGGCGGCGGAGCTGCTTGGTGATCTaGAGGACCGAGGGGACGGGG +
Preference number: 4 (lower is better)
Translates to: PKGHGRGPRALHPRRRRRSCLVI*RTEGTG
Trigger: CCCCGTCCCCTCGGTCCTGCAGATCACCAAGCAGCT...CCGCCGCCGTCTGCGTGGATGGAGGGCTCGAGGCCCTCGCCCGTGTCCCTTAGG
70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000336990.8
ENST00000440960.6
ENST00000587735.1
ENST00000592149.5
CDS-3UTR CCA 90 bp TCCTCCCCGGCCCTGTGTGCCCTCGCAGCCAGACGTGCTTTTCCGTCCCGTCCTCGGCAGGCAGGACGATaGGCGCCGCCCCTAAGGGAC +
Preference number: 4 (lower is better)
Translates to: SSPALCALAARRAFPSRPRQAGR*APPLRD
Trigger: GTCCCTTAGGGGCGGCGCCCATCGTCCTGCCTGCCG...AGGACGGGACGGAAAAGCACGTCTGGCTGCGAGGGCACACAGGGCCGGGGAGGA
70% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENST00000336990.8
ENST00000440960.6
ENST00000587735.1
ENST00000590956.5
ENST00000592149.5
CDS-3UTR CCA 90 bp GCCCTGTGTGCCCTCGCAGCCAGACGTGCTTTTCCGTCCCGTCCTTGCTCGTCCGCAGGGCCTCCAGCCTaGGCGCAGGATGTCCCCCGG +
Preference number: 4 (lower is better)
Translates to: ALCALAARRAFPSRPCSSAGPPA*AQDVPR
Trigger: CCGGGGGACATCCTGCGCCCAGGCTGGAGGCCCTGC...GGACGAGCAAGGACGGGACGGAAAAGCACGTCTGGCTGCGAGGGCACACAGGGC
70% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000336990.8
ENST00000440960.6
ENST00000587735.1
ENST00000592149.5
CDS-3UTR TCA 90 bp GGGACGGGGGCGGAGAGGCTGGAGGGCGGCACACCCGCCAGCGTTTGTGGAGGAAGGAGAGCTGCTTGGTaGTCTGCAGGACCGAGGGGA +
Preference number: 4 (lower is better)
Translates to: GTGAERLEGGTPASVCGGRRAAW*SAGPRG
Trigger: TCCCCTCGGTCCTGCAGATCACCAAGCAGCTCTCCT...TCCTCCACAAACGCTGGCGGGTGTGCCGCCCTCCAGCCTCTCCGCCCCCGTCCC
69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000336990.8
ENST00000440960.6
ENST00000587735.1
ENST00000592149.5
CDS-3UTR GCA 90 bp GGACATCTGGTCCCGGGGTCACCTGCGACCCGCGATCAGTCCAGCCTAATCCTCGCAGGGCGCGGGCTCTaGGATCCGGGCCGGGTGCTT +
Preference number: 4 (lower is better)
Translates to: GHLVPGSPATRDQSSLILAGRGL*DPGRVL
Trigger: AAGCACCCGGCCCGGATCGCAGAGCCCGCGCCCTGC...GAGGATTAGGCTGGACTGATCGCGGGTCGCAGGTGACCCCGGGACCAGATGTCC
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000336990.8
ENST00000440960.6
ENST00000590956.5
CDS-3UTR GCA 90 bp CCTAATCCTCCTCCCCGGCCCTGTGTGCCCTCGCAGCCAGACGTGCTTTTCCGTAGCAGGCGCAAGCTGTaGAGGCGGCCGCGGCCGTCC +
Preference number: 4 (lower is better)
Translates to: PNPPPRPCVPSQPDVLFRSRRKL*RRPRPS
Trigger: GGACGGCCGCGGCCGCCTGCACAGCTTGCGCCTGCT...ACGGAAAAGCACGTCTGGCTGCGAGGGCACACAGGGCCGGGGAGGAGGATTAGG
69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000336990.8
ENST00000440960.6
ENST00000592149.5
CDS-3UTR GCA 90 bp GGTCCCGGGGTCACCTGCGACCCGCGATCAGTCCAGCCTAATCCTCCTCCCCGGGGGGCTGGCTGGGGCTaGTCCCTGTTGCACGCTCAT +
Preference number: 4 (lower is better)
Translates to: GPGVTCDPRSVQPNPPPRGAGWG*SLLHAH
Trigger: ATGAGCGTGCAACAGGGAGCAGCCCCAGCCAGCCCC...CCGGGGAGGAGGATTAGGCTGGACTGATCGCGGGTCGCAGGTGACCCCGGGACC
69% GC, longest homopolymer 6 nt, total homopolymer stretches 18 nt.
Matches the following 6 transcripts:
ENST00000336990.8
ENST00000440960.6
ENST00000587735.1
ENST00000589565.1
ENST00000590956.5
ENST00000592149.5
CDS-3UTR GCA 90 bp GGGACGGGGGCGGAGAGGCTGGAGGGCGGCACACCCGCCAGCGTTTGTGGAGGAAGCCGACTGGCAGCTTaGGGGAGGCCTTTACCCTTC +
Preference number: 4 (lower is better)
Translates to: GTGAERLEGGTPASVCGGSRLAA*GRPLPF
Trigger: GAAGGGTAAAGGCCTCCCGCAAGCTGCCAGTCGGCT...TCCTCCACAAACGCTGGCGGGTGTGCCGCCCTCCAGCCTCTCCGCCCCCGTCCC
69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000336990.8
ENST00000440960.6
ENST00000587735.1
ENST00000592149.5
CDS-3UTR GCA 90 bp GCCACTGCGGCAGGCAGGACGATGGGCGCCGCCCCTAAGGGACACGGGCGAGGGCAACAGAGTGGAGCGTaGAGCAGCACTATGCTCCCG +
Preference number: 4 (lower is better)
Translates to: ATAAGRTMGAAPKGHGRGQQSGA*SSTMLP
Trigger: CGGGAGCATAGTGCTGCTGCACGCTCCACTCTGTTG...CCCTCGCCCGTGTCCCTTAGGGGCGGCGCCCATCGTCCTGCCTGCCGCAGTGGC
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000587735.1
CDS-3UTR CCA 90 bp GCTGGGGCTGCTCCCTGTTGCACGCTCATGAGGGGAGGGACATCTGGTCCCGGGTCGCTCTCACGAGGCTaGGCAGCCCCCACTCGGTGC +
Preference number: 4 (lower is better)
Translates to: AGAAPCCTLMRGGTSGPGSLSRG*AAPTRC
Trigger: GCACCGAGTGGGGGCTGCCCAGCCTCGTGAGAGCGA...CCCGGGACCAGATGTCCCTCCCCTCATGAGCGTGCAACAGGGAGCAGCCCCAGC
69% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENST00000336990.8
ENST00000440960.6
ENST00000592149.5
CDS-3UTR CCA 90 bp GGGGCTGGGCCACTGCGGCAGGCAGGACGATGGGCGCCGCCCCTAAGGGACACGCGAAAAAGAGCCGACTaGCAGCTTGCGGGAGGCCTT +
Preference number: 4 (lower is better)
Translates to: GAGPLRQAGRWAPPLRDTRKRAD*QLAGGL
Trigger: AAGGCCTCCCGCAAGCTGCCAGTCGGCTCTTTTTCG...CGTGTCCCTTAGGGGCGGCGCCCATCGTCCTGCCTGCCGCAGTGGCCCAGCCCC
69% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENST00000336990.8
ENST00000440960.6
ENST00000587735.1
ENST00000592149.5
CDS-3UTR CCA 90 bp GACGGGGGCGGAGAGGCTGGAGGGCGGCACACCCGCCAGCGTTTGTGGAGGAGCCCCACCTCCAGTAGCTaGGACTACAGGCGTGTGCCA +
Preference number: 4 (lower is better)
Translates to: DGGGEAGGRHTRQRLWRSPTSSS*DYRRVP
Trigger: TGGCACACGCCTGTAGTCCCAGCTACTGGAGGTGGG...GCTCCTCCACAAACGCTGGCGGGTGTGCCGCCCTCCAGCCTCTCCGCCCCCGTC
69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000592149.5
CDS-3UTR TCA 90 bp AGAAGGGGCTGGGCCACTGCGGCAGGCAGGACGATGGGCGCCGCCCCTAAGGGACCTGTTGCACGCTCATaGGGGGAGGGACATCTGGTC +
Preference number: 4 (lower is better)
Translates to: RRGWATAAGRTMGAAPKGPVARS*GEGHLV
Trigger: GACCAGATGTCCCTCCCCTCATGAGCGTGCAACAGG...TCCCTTAGGGGCGGCGCCCATCGTCCTGCCTGCCGCAGTGGCCCAGCCCCTTCT
68% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 5 transcripts:
ENST00000336990.8
ENST00000440960.6
ENST00000587735.1
ENST00000590956.5
ENST00000592149.5
CDS-3UTR GCA 90 bp CTAATCCTCCTCCCCGGCCCTGTGTGCCCTCGCAGCCAGACGTGCTTTTCCGTCCTCCCCGGCCCTGTGTaGCCTCGCAGCCAGACGTGC +
Preference number: 4 (lower is better)
Translates to: LILLPGPVCPRSQTCFSVLPGPV*PRSQTC
Trigger: GCACGTCTGGCTGCGAGGGCACACAGGGCCGGGGAG...GACGGAAAAGCACGTCTGGCTGCGAGGGCACACAGGGCCGGGGAGGAGGATTAG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 6 transcripts:
ENST00000336990.8
ENST00000440960.6
ENST00000587735.1
ENST00000589565.1
ENST00000590956.5
ENST00000592149.5
CDS-3UTR GCA 90 bp AGCCTAATCCTCCTCCCCGGCCCTGTGTGCCCTCGCAGCCAGACGTGCTTTTCCCTCCCCGGCCCTGTGTaGCCTCGCAGCCAGACGTGC +
Preference number: 4 (lower is better)
Translates to: SLILLPGPVCPRSQTCFSLPGPV*PRSQTC
Trigger: GCACGTCTGGCTGCGAGGGCACACAGGGCCGGGGAG...GGAAAAGCACGTCTGGCTGCGAGGGCACACAGGGCCGGGGAGGAGGATTAGGCT
68% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 6 transcripts:
ENST00000336990.8
ENST00000440960.6
ENST00000587735.1
ENST00000589565.1
ENST00000590956.5
ENST00000592149.5
CDS-3UTR GCA 90 bp CATGAGGGGAGGGACATCTGGTCCCGGGGTCACCTGCGACCCGCGATCAGTCCAGGTCCCGGGGTCACCTaGGACCCGCGATCAGTCCAG +
Preference number: 4 (lower is better)
Translates to: HEGRDIWSRGHLRPAISPGPGVT*DPRSVQ
Trigger: CTGGACTGATCGCGGGTCGCAGGTGACCCCGGGACC...TGGACTGATCGCGGGTCGCAGGTGACCCCGGGACCAGATGTCCCTCCCCTCATG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 6 transcripts:
ENST00000336990.8
ENST00000440960.6
ENST00000587735.1
ENST00000589565.1
ENST00000590956.5
ENST00000592149.5
CDS-3UTR GCA 90 bp GCTGCTCCCTGTTGCACGCTCATGAGGGGAGGGACATCTGGTCCCGGGGTCACCGGTCCCGGGGTCACCTaGGACCCGCGATCAGTCCAG +
Preference number: 4 (lower is better)
Translates to: AAPCCTLMRGGTSGPGVTGPGVT*DPRSVQ
Trigger: CTGGACTGATCGCGGGTCGCAGGTGACCCCGGGACC...GGTGACCCCGGGACCAGATGTCCCTCCCCTCATGAGCGTGCAACAGGGAGCAGC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 6 transcripts:
ENST00000336990.8
ENST00000440960.6
ENST00000587735.1
ENST00000589565.1
ENST00000590956.5
ENST00000592149.5
CDS-3UTR GCA 90 bp CACGCTCATGAGGGGAGGGACATCTGGTCCCGGGGTCACCTGCGACCCGCGATCGGGGCTGCTCCCTGTTaGACGCTCATGAGGGGAGGG +
Preference number: 4 (lower is better)
Translates to: HAHEGRDIWSRGHLRPAIGAAPC*TLMRGG
Trigger: CCCTCCCCTCATGAGCGTGCAACAGGGAGCAGCCCC...GATCGCGGGTCGCAGGTGACCCCGGGACCAGATGTCCCTCCCCTCATGAGCGTG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 6 transcripts:
ENST00000336990.8
ENST00000440960.6
ENST00000587735.1
ENST00000589565.1
ENST00000590956.5
ENST00000592149.5
CDS-3UTR GCA 90 bp GGCTGGGGCTGCTCCCTGTTGCACGCTCATGAGGGGAGGGACATCTGGTCCCGGGGGGCTGCTCCCTGTTaGACGCTCATGAGGGGAGGG +
Preference number: 4 (lower is better)
Translates to: GWGCSLLHAHEGRDIWSRGAAPC*TLMRGG
Trigger: CCCTCCCCTCATGAGCGTGCAACAGGGAGCAGCCCC...CCGGGACCAGATGTCCCTCCCCTCATGAGCGTGCAACAGGGAGCAGCCCCAGCC
68% GC, longest homopolymer 6 nt, total homopolymer stretches 18 nt.
Matches the following 6 transcripts:
ENST00000336990.8
ENST00000440960.6
ENST00000587735.1
ENST00000589565.1
ENST00000590956.5
ENST00000592149.5
CDS-3UTR CCA 90 bp TCCTCCCCGGCCCTGTGTGCCCTCGCAGCCAGACGTGCTTTTCCGTCCCGTCCTTTGCGCATGGCCGCCTaGATGACCGTGTCCCACGGG +
Preference number: 4 (lower is better)
Translates to: SSPALCALAARRAFPSRPLRMAA*MTVSHG
Trigger: CCCGTGGGACACGGTCATCCAGGCGGCCATGCGCAA...AGGACGGGACGGAAAAGCACGTCTGGCTGCGAGGGCACACAGGGCCGGGGAGGA
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000336990.8
ENST00000440960.6
ENST00000592149.5
CDS-3UTR CCA 90 bp GCTGCTCCCTGTTGCACGCTCATGAGGGGAGGGACATCTGGTCCCGGGGTCACCAGGGAGAGAAGGGGCTaGGCCACTGCGGCAGGCAGG +
Preference number: 4 (lower is better)
Translates to: AAPCCTLMRGGTSGPGVTRERRG*ATAAGR
Trigger: CCTGCCTGCCGCAGTGGCCCAGCCCCTTCTCTCCCT...GGTGACCCCGGGACCAGATGTCCCTCCCCTCATGAGCGTGCAACAGGGAGCAGC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENST00000336990.8
ENST00000440960.6
ENST00000587735.1
ENST00000590956.5
ENST00000592149.5
CDS-3UTR CCA 90 bp GGACCCCAGCCCTCTCCCCGCATGAGGAGCCTCGTCAGGAGAGGCTTAGCCACTAGGGAGAGAAGGGGCTaGGCCACTGCGGCAGGCAGG +
Preference number: 4 (lower is better)
Translates to: GPQPSPRMRSLVRRGLATRERRG*ATAAGR
Trigger: CCTGCCTGCCGCAGTGGCCCAGCCCCTTCTCTCCCT...AGTGGCTAAGCCTCTCCTGACGAGGCTCCTCATGCGGGGAGAGGGCTGGGGTCC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENST00000336990.8
ENST00000440960.6
ENST00000587735.1
ENST00000592149.5
CDS-3UTR CCA 90 bp GACGGGGGCGGAGAGGCTGGAGGGCGGCACACCCGCCAGCGTTTGTGGAGGAGCACCCGCCAGCGTTTGTaGAGGAGCCTAAGTGGAGGA +
Preference number: 4 (lower is better)
Translates to: DGGGEAGGRHTRQRLWRSTRQRL*RSLSGG
Trigger: TCCTCCACTTAGGCTCCTCCACAAACGCTGGCGGGT...GCTCCTCCACAAACGCTGGCGGGTGTGCCGCCCTCCAGCCTCTCCGCCCCCGTC
68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENST00000336990.8
ENST00000440960.6
ENST00000587735.1
ENST00000592149.5
CDS-3UTR CCA 90 bp ATGGGCGCCGCCCCTAAGGGACACGGGCGAGGGCCTCGAGCCCTCCATCCACGCACCCGCCAGCGTTTGTaGAGGAGCCTAAGTGGAGGA +
Preference number: 4 (lower is better)
Translates to: MGAAPKGHGRGPRALHPRTRQRL*RSLSGG
Trigger: TCCTCCACTTAGGCTCCTCCACAAACGCTGGCGGGT...GCGTGGATGGAGGGCTCGAGGCCCTCGCCCGTGTCCCTTAGGGGCGGCGCCCAT
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000336990.8
ENST00000440960.6
ENST00000587735.1
ENST00000592149.5
CDS-3UTR CCA 90 bp GGTCCCGGGGTCACCTGCGACCCGCGATCAGTCCAGCCTAATCCTCCTCCCCGGCAGACTGGAGGGGGCTaGCACAGCCTGCAGAAAGGG +
Preference number: 4 (lower is better)
Translates to: GPGVTCDPRSVQPNPPPRQTGGG*HSLQKG
Trigger: CCCTTTCTGCAGGCTGTGCCAGCCCCCTCCAGTCTG...CCGGGGAGGAGGATTAGGCTGGACTGATCGCGGGTCGCAGGTGACCCCGGGACC
68% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENST00000336990.8
ENST00000440960.6
ENST00000587735.1
ENST00000592149.5
CDS-3UTR TCA 90 bp CTGTGTGCCCTCGCAGCCAGACGTGCTTTTCCGTCCCGTCCTTGCTCGTCCTCTGCATGGCCGCCTGGATaGCCGTGTCCCACGGGTGGC +
Preference number: 4 (lower is better)
Translates to: LCALAARRAFPSRPCSSSAWPPG*PCPTGG
Trigger: GCCACCCGTGGGACACGGTCATCCAGGCGGCCATGC...AGAGGACGAGCAAGGACGGGACGGAAAAGCACGTCTGGCTGCGAGGGCACACAG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000336990.8
ENST00000440960.6
ENST00000592149.5
CDS-3UTR TCA 90 bp GGCTGGGCCACTGCGGCAGGCAGGACGATGGGCGCCGCCCCTAAGGGACACGGGTCTGGGTTCTCTGGATaGGGTGTGTACACCAACCTC +
Preference number: 4 (lower is better)
Translates to: GWATAAGRTMGAAPKGHGSGFSG*GVYTNL
Trigger: GAGGTTGGTGTACACACCTCATCCAGAGAACCCAGA...CCCGTGTCCCTTAGGGGCGGCGCCCATCGTCCTGCCTGCCGCAGTGGCCCAGCC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENST00000336990.8
ENST00000440960.6
ENST00000587735.1
ENST00000590956.5
ENST00000592149.5
CDS-3UTR TCA 90 bp GCTCCCTGTTGCACGCTCATGAGGGGAGGGACATCTGGTCCCGGGGTCACCTGCAGCCCTCTCCCCGCATaGGGAGCCTCGTCAGGAGAG +
Preference number: 4 (lower is better)
Translates to: APCCTLMRGGTSGPGVTCSPLPA*GASSGE
Trigger: CTCTCCTGACGAGGCTCCTCATGCGGGGAGAGGGCT...GCAGGTGACCCCGGGACCAGATGTCCCTCCCCTCATGAGCGTGCAACAGGGAGC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENST00000336990.8
ENST00000440960.6
ENST00000587735.1
ENST00000592149.5
CDS-3UTR TCA 90 bp GGACCCCAGCCCTCTCCCCGCATGAGGAGCCTCGTCAGGAGAGGCTTAGCCACTAGCCCTCTCCCCGCATaGGGAGCCTCGTCAGGAGAG +
Preference number: 4 (lower is better)
Translates to: GPQPSPRMRSLVRRGLATSPLPA*GASSGE
Trigger: CTCTCCTGACGAGGCTCCTCATGCGGGGAGAGGGCT...AGTGGCTAAGCCTCTCCTGACGAGGCTCCTCATGCGGGGAGAGGGCTGGGGTCC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENST00000336990.8
ENST00000440960.6
ENST00000587735.1
ENST00000592149.5
CDS-3UTR GCA 90 bp GCCCTCGCAGCCAGACGTGCTTTTCCGTCCCGTCCTTGCTCGTCCTCTCCTCACGCTCCAGATCTTCATTaGCGCCGGCGCAGGGCGCGG +
Preference number: 4 (lower is better)
Translates to: ALAARRAFPSRPCSSSPHAPDLH*RRRRAR
Trigger: CCGCGCCCTGCGCCGGCGGCAATGAAGATCTGGAGC...GTGAGGAGAGGACGAGCAAGGACGGGACGGAAAAGCACGTCTGGCTGCGAGGGC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000336990.8
ENST00000440960.6
ENST00000589565.1
ENST00000590956.5
CDS-3UTR GCA 90 bp TGTGTGCCCTCGCAGCCAGACGTGCTTTTCCGTCCCGTCCTTGCTCGTCCTCTCCTCCCCGGCCCTGTGTaGCCTCGCAGCCAGACGTGC +
Preference number: 4 (lower is better)
Translates to: CVPSQPDVLFRPVLARPLLPGPV*PRSQTC
Trigger: GCACGTCTGGCTGCGAGGGCACACAGGGCCGGGGAG...GAGAGGACGAGCAAGGACGGGACGGAAAAGCACGTCTGGCTGCGAGGGCACACA
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENST00000336990.8
ENST00000440960.6
ENST00000587735.1
ENST00000589565.1
ENST00000590956.5
ENST00000592149.5
CDS-3UTR GCA 90 bp GGCTGCTCCCTGTTGCACGCTCATGAGGGGAGGGACATCTGGTCCCGGGGTCACGGGGCTGGCTGGGGCTaGTCCCTGTTGCACGCTCAT +
Preference number: 4 (lower is better)
Translates to: GCSLLHAHEGRDIWSRGHGAGWG*SLLHAH
Trigger: ATGAGCGTGCAACAGGGAGCAGCCCCAGCCAGCCCC...GTGACCCCGGGACCAGATGTCCCTCCCCTCATGAGCGTGCAACAGGGAGCAGCC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 6 transcripts:
ENST00000336990.8
ENST00000440960.6
ENST00000587735.1
ENST00000589565.1
ENST00000590956.5
ENST00000592149.5
CDS-3UTR CCA 90 bp GGCTGCTCCCTGTTGCACGCTCATGAGGGGAGGGACATCTGGTCCCGGGGTCACTTGCGCATGGCCGCCTaGATGACCGTGTCCCACGGG +
Preference number: 4 (lower is better)
Translates to: GCSLLHAHEGRDIWSRGHLRMAA*MTVSHG
Trigger: CCCGTGGGACACGGTCATCCAGGCGGCCATGCGCAA...GTGACCCCGGGACCAGATGTCCCTCCCCTCATGAGCGTGCAACAGGGAGCAGCC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000336990.8
ENST00000440960.6
ENST00000592149.5
CDS-3UTR CCA 90 bp CTGTGTGCCCTCGCAGCCAGACGTGCTTTTCCGTCCCGTCCTTGCTCGTCCTCTCGGCAGGCAGGACGATaGGCGCCGCCCCTAAGGGAC +
Preference number: 4 (lower is better)
Translates to: LCALAARRAFPSRPCSSSRQAGR*APPLRD
Trigger: GTCCCTTAGGGGCGGCGCCCATCGTCCTGCCTGCCG...AGAGGACGAGCAAGGACGGGACGGAAAAGCACGTCTGGCTGCGAGGGCACACAG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENST00000336990.8
ENST00000440960.6
ENST00000587735.1
ENST00000590956.5
ENST00000592149.5
CDS-3UTR CCA 90 bp AGCCTAATCCTCCTCCCCGGCCCTGTGTGCCCTCGCAGCCAGACGTGCTTTTCCAGGGAGAGAAGGGGCTaGGCCACTGCGGCAGGCAGG +
Preference number: 4 (lower is better)
Translates to: SLILLPGPVCPRSQTCFSRERRG*ATAAGR
Trigger: CCTGCCTGCCGCAGTGGCCCAGCCCCTTCTCTCCCT...GGAAAAGCACGTCTGGCTGCGAGGGCACACAGGGCCGGGGAGGAGGATTAGGCT
67% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENST00000336990.8
ENST00000440960.6
ENST00000587735.1
ENST00000590956.5
ENST00000592149.5
CDS-3UTR CCA 90 bp GATACTATGAGGGATCCATGGCCTCCAGCCCCAGCAGGTGAGGCTGGCAAGCAGCCCCGGGCACGGCAGTaGCAGACTGGAGGGGGCTGG +
Preference number: 4 (lower is better)
Translates to: DTMRDPWPPAPAGEAGKQPRARQ*QTGGGW
Trigger: CCAGCCCCCTCCAGTCTGCCACTGCCGTGCCCGGGG...CTGCTTGCCAGCCTCACCTGCTGGGGCTGGAGGCCATGGATCCCTCATAGTATC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENST00000336990.8
ENST00000440960.6
ENST00000587735.1
ENST00000592149.5
CDS-3UTR TCA 90 bp GCCACTGCGGCAGGCAGGACGATGGGCGCCGCCCCTAAGGGACACGGGCGAGGGAAGCATCACCATTTATaGCAAGCACAGGCACAGGCC +
Preference number: 4 (lower is better)
Translates to: ATAAGRTMGAAPKGHGRGKHHHL*QAQAQA
Trigger: GGCCTGTGCCTGTGCTTGTCATAAATGGTGATGCTT...CCCTCGCCCGTGTCCCTTAGGGGCGGCGCCCATCGTCCTGCCTGCCGCAGTGGC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000440960.6
ENST00000587735.1
ENST00000590956.5
ENST00000592149.5
CDS-3UTR TCA 90 bp GGGGCTGGGCCACTGCGGCAGGCAGGACGATGGGCGCCGCCCCTAAGGGACACGAAGCATCACCATTTATaGCAAGCACAGGCACAGGCC +
Preference number: 4 (lower is better)
Translates to: GAGPLRQAGRWAPPLRDTKHHHL*QAQAQA
Trigger: GGCCTGTGCCTGTGCTTGTCATAAATGGTGATGCTT...CGTGTCCCTTAGGGGCGGCGCCCATCGTCCTGCCTGCCGCAGTGGCCCAGCCCC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000440960.6
ENST00000587735.1
ENST00000590956.5
ENST00000592149.5
CDS-3UTR GCA 90 bp CACGCTCATGAGGGGAGGGACATCTGGTCCCGGGGTCACCTGCGACCCGCGATCCCTCGCAGCCAGACGTaGTTTTCCGTCCCGTCCTTG +
Preference number: 4 (lower is better)
Translates to: HAHEGRDIWSRGHLRPAIPRSQT*FSVPSL
Trigger: CAAGGACGGGACGGAAAAGCACGTCTGGCTGCGAGG...GATCGCGGGTCGCAGGTGACCCCGGGACCAGATGTCCCTCCCCTCATGAGCGTG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 6 transcripts:
ENST00000336990.8
ENST00000440960.6
ENST00000587735.1
ENST00000589565.1
ENST00000590956.5
ENST00000592149.5
CDS-3UTR GCA 90 bp TGCACGCTCATGAGGGGAGGGACATCTGGTCCCGGGGTCACCTGCGACCCGCGAAGCCGACTGGCAGCTTaGGGGAGGCCTTTACCCTTC +
Preference number: 4 (lower is better)
Translates to: CTLMRGGTSGPGVTCDPRSRLAA*GRPLPF
Trigger: GAAGGGTAAAGGCCTCCCGCAAGCTGCCAGTCGGCT...TCGCGGGTCGCAGGTGACCCCGGGACCAGATGTCCCTCCCCTCATGAGCGTGCA
66% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENST00000336990.8
ENST00000440960.6
ENST00000587735.1
ENST00000592149.5
CDS-3UTR GCA 90 bp GCAGGACGATGGGCGCCGCCCCTAAGGGACACGGGCGAGGGCCTCGAGCCCTCCACTTCTGGAAGGCTTTaGGAAAAAGAGCCGACTGGC +
Preference number: 4 (lower is better)
Translates to: AGRWAPPLRDTGEGLEPSTSGRL*EKEPTG
Trigger: GCCAGTCGGCTCTTTTTCGCAAAGCCTTCCAGAAGT...GGAGGGCTCGAGGCCCTCGCCCGTGTCCCTTAGGGGCGGCGCCCATCGTCCTGC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000336990.8
ENST00000440960.6
ENST00000587735.1
ENST00000592149.5
CDS-3UTR GCA 90 bp AGCCTAAGTGGAGGACAGCGTGGGCGGGCGGGCGGGGGCGGCGCGGGTCACCTGCGTGCAGCAGCACTATaGTCCCGGCAAAATAAAACA +
Preference number: 4 (lower is better)
Translates to: SLSGGQRGRAGGGGAGHLRAAAL*SRQNKT
Trigger: TGTTTTATTTTGCCGGGAGCATAGTGCTGCTGCACG...CAGGTGACCCGCGCCGCCCCCGCCCGCCCGCCCACGCTGTCCTCCACTTAGGCT
66% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000587735.1
CDS-3UTR GCA 90 bp GCTGCTCCCTGTTGCACGCTCATGAGGGGAGGGACATCTGGTCCCGGGGTCACCGCCTCAGCCTCCTCTTaGCCCACCTCCAGTAGCTGG +
Preference number: 4 (lower is better)
Translates to: AAPCCTLMRGGTSGPGVTASASS*PTSSSW
Trigger: CCAGCTACTGGAGGTGGGGCAAGAGGAGGCTGAGGC...GGTGACCCCGGGACCAGATGTCCCTCCCCTCATGAGCGTGCAACAGGGAGCAGC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000592149.5
CDS-3UTR CCA 90 bp TTGTGGAGGAGCCTAAGTGGAGGACAGCGTGGGCGGGCGGGCGGGGGCGGCGCGGAGCACGGTCATTTCTaGGTTCTCTGGATGAGGTGT +
Preference number: 4 (lower is better)
Translates to: LWRSLSGGQRGRAGGGGAEHGHF*VLWMRC
Trigger: ACACCTCATCCAGAGAACCCAGAAATGACCGTGCTC...CGCGCCGCCCCCGCCCGCCCGCCCACGCTGTCCTCCACTTAGGCTCCTCCACAA
66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENST00000336990.8
ENST00000440960.6
ENST00000587735.1
ENST00000592149.5
CDS-3UTR CCA 90 bp CAGCCTAATCCTCCTCCCCGGCCCTGTGTGCCCTCGCAGCCAGACGTGCTTTTCGTGGAGGAGCCTAAGTaGAGGACAGCGTGGGCGGGC +
Preference number: 4 (lower is better)
Translates to: QPNPPPRPCVPSQPDVLFVEEPK*RTAWAG
Trigger: GCCCGCCCACGCTGTCCTCCACTTAGGCTCCTCCAC...GAAAAGCACGTCTGGCTGCGAGGGCACACAGGGCCGGGGAGGAGGATTAGGCTG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000336990.8
ENST00000440960.6
ENST00000587735.1
ENST00000592149.5
CDS-3UTR CCA 90 bp TGCACGCTCATGAGGGGAGGGACATCTGGTCCCGGGGTCACCTGCGACCCGCGAGCACGCCTCGGCACCTaGCAGCCCCTTGGTTTTTGT +
Preference number: 4 (lower is better)
Translates to: CTLMRGGTSGPGVTCDPRARLGT*QPLGFC
Trigger: ACAAAAACCAAGGGGCTGCCAGGTGCCGAGGCGTGC...TCGCGGGTCGCAGGTGACCCCGGGACCAGATGTCCCTCCCCTCATGAGCGTGCA
66% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENST00000592149.5
CDS-3UTR CCA 90 bp GCCCTCGCAGCCAGACGTGCTTTTCCGTCCCGTCCTTGCTCGTCCTCTCCTCACACCGTGTCCCACGGGTaGCTGCGGGGAGAGCATAGG +
Preference number: 4 (lower is better)
Translates to: ALAARRAFPSRPCSSSPHTVSHG*LRGEHR
Trigger: CCTATGCTCTCCCCGCAGCCACCCGTGGGACACGGT...GTGAGGAGAGGACGAGCAAGGACGGGACGGAAAAGCACGTCTGGCTGCGAGGGC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000592149.5
CDS-3UTR TCA 90 bp GGAGAGGCTGGAGGGCGGCACACCCGCCAGCGTTTGTGGAGGAGCCTAAGTGGACCTGTTGCACGCTCATaGGGGGAGGGACATCTGGTC +
Preference number: 4 (lower is better)
Translates to: GEAGGRHTRQRLWRSLSGPVARS*GEGHLV
Trigger: GACCAGATGTCCCTCCCCTCATGAGCGTGCAACAGG...TCCACTTAGGCTCCTCCACAAACGCTGGCGGGTGTGCCGCCCTCCAGCCTCTCC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENST00000336990.8
ENST00000440960.6
ENST00000587735.1
ENST00000592149.5
CDS-3UTR TCA 90 bp GGAGAGGCTGGAGGGCGGCACACCCGCCAGCGTTTGTGGAGGAGCCTAAGTGGAAGGAGAGCTGCTTGGTaGTCTGCAGGACCGAGGGGA +
Preference number: 4 (lower is better)
Translates to: GEAGGRHTRQRLWRSLSGRRAAW*SAGPRG
Trigger: TCCCCTCGGTCCTGCAGATCACCAAGCAGCTCTCCT...TCCACTTAGGCTCCTCCACAAACGCTGGCGGGTGTGCCGCCCTCCAGCCTCTCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000336990.8
ENST00000440960.6
ENST00000587735.1
ENST00000592149.5
CDS-3UTR TCA 90 bp AGGGGCTGGGCCACTGCGGCAGGCAGGACGATGGGCGCCGCCCCTAAGGGACACAAACCTTGGATACTATaGGGGATCCATGGCCTCCAG +
Preference number: 4 (lower is better)
Translates to: RGWATAAGRTMGAAPKGHKPWIL*GIHGLQ
Trigger: CTGGAGGCCATGGATCCCTCATAGTATCCAAGGTTT...GTGTCCCTTAGGGGCGGCGCCCATCGTCCTGCCTGCCGCAGTGGCCCAGCCCCT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENST00000336990.8
ENST00000440960.6
ENST00000587735.1
ENST00000592149.5
CDS-3UTR GCA 90 bp GGCTGCTCCCTGTTGCACGCTCATGAGGGGAGGGACATCTGGTCCCGGGGTCACCCTCGCAGCCAGACGTaGTTTTCCGTCCCGTCCTTG +
Preference number: 4 (lower is better)
Translates to: GCSLLHAHEGRDIWSRGHPRSQT*FSVPSL
Trigger: CAAGGACGGGACGGAAAAGCACGTCTGGCTGCGAGG...GTGACCCCGGGACCAGATGTCCCTCCCCTCATGAGCGTGCAACAGGGAGCAGCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 6 transcripts:
ENST00000336990.8
ENST00000440960.6
ENST00000587735.1
ENST00000589565.1
ENST00000590956.5
ENST00000592149.5
CDS-3UTR GCA 90 bp GATACTATGAGGGATCCATGGCCTCCAGCCCCAGCAGGTGAGGCTGGCAAGCAGGGTCCCGGGGTCACCTaGGACCCGCGATCAGTCCAG +
Preference number: 4 (lower is better)
Translates to: DTMRDPWPPAPAGEAGKQGPGVT*DPRSVQ
Trigger: CTGGACTGATCGCGGGTCGCAGGTGACCCCGGGACC...CTGCTTGCCAGCCTCACCTGCTGGGGCTGGAGGCCATGGATCCCTCATAGTATC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000336990.8
ENST00000440960.6
ENST00000587735.1
ENST00000592149.5
CDS-3UTR GCA 90 bp GCAGCCAGACGTGCTTTTCCGTCCCGTCCTTGCTCGTCCTCTCCTCACCTCCTTGGTCCCGGGGTCACCTaGGACCCGCGATCAGTCCAG +
Preference number: 4 (lower is better)
Translates to: AARRAFPSRPCSSSPHLLGPGVT*DPRSVQ
Trigger: CTGGACTGATCGCGGGTCGCAGGTGACCCCGGGACC...AAGGAGGTGAGGAGAGGACGAGCAAGGACGGGACGGAAAAGCACGTCTGGCTGC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENST00000336990.8
ENST00000440960.6
ENST00000587735.1
ENST00000589565.1
ENST00000590956.5
ENST00000592149.5
CDS-3UTR GCA 90 bp GCCCTCGCAGCCAGACGTGCTTTTCCGTCCCGTCCTTGCTCGTCCTCTCCTCACAGCTGCTTGGTGATCTaGAGGACCGAGGGGACGGGG +
Preference number: 4 (lower is better)
Translates to: ALAARRAFPSRPCSSSPHSCLVI*RTEGTG
Trigger: CCCCGTCCCCTCGGTCCTGCAGATCACCAAGCAGCT...GTGAGGAGAGGACGAGCAAGGACGGGACGGAAAAGCACGTCTGGCTGCGAGGGC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000336990.8
ENST00000440960.6
ENST00000587735.1
ENST00000592149.5
CDS-3UTR GCA 90 bp CCCTCGCAGCCAGACGTGCTTTTCCGTCCCGTCCTTGCTCGTCCTCTCCTCACCAGCTGCTTGGTGATCTaGAGGACCGAGGGGACGGGG +
Preference number: 4 (lower is better)
Translates to: PSQPDVLFRPVLARPLLTSCLVI*RTEGTG
Trigger: CCCCGTCCCCTCGGTCCTGCAGATCACCAAGCAGCT...GGTGAGGAGAGGACGAGCAAGGACGGGACGGAAAAGCACGTCTGGCTGCGAGGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000336990.8
ENST00000440960.6
ENST00000587735.1
ENST00000592149.5
CDS-3UTR GCA 90 bp GGAGAGGCTGGAGGGCGGCACACCCGCCAGCGTTTGTGGAGGAGCCTAAGTGGAAGCCGACTGGCAGCTTaGGGGAGGCCTTTACCCTTC +
Preference number: 4 (lower is better)
Translates to: GEAGGRHTRQRLWRSLSGSRLAA*GRPLPF
Trigger: GAAGGGTAAAGGCCTCCCGCAAGCTGCCAGTCGGCT...TCCACTTAGGCTCCTCCACAAACGCTGGCGGGTGTGCCGCCCTCCAGCCTCTCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000336990.8
ENST00000440960.6
ENST00000587735.1
ENST00000592149.5
CDS-3UTR GCA 90 bp GGGACGGGGGCGGAGAGGCTGGAGGGCGGCACACCCGCCAGCGTTTGTGGAGGAACTTCTGGAAGGCTTTaGGAAAAAGAGCCGACTGGC +
Preference number: 4 (lower is better)
Translates to: GTGAERLEGGTPASVCGGTSGRL*EKEPTG
Trigger: GCCAGTCGGCTCTTTTTCGCAAAGCCTTCCAGAAGT...TCCTCCACAAACGCTGGCGGGTGTGCCGCCCTCCAGCCTCTCCGCCCCCGTCCC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENST00000336990.8
ENST00000440960.6
ENST00000587735.1
ENST00000592149.5
CDS-3UTR CCA 90 bp GCGCCGCCCCTAAGGGACACGGGCGAGGGCCTCGAGCCCTCCATCCACGCAGACGAGCACGGTCATTTCTaGGTTCTCTGGATGAGGTGT +
Preference number: 4 (lower is better)
Translates to: APPLRDTGEGLEPSIHADEHGHF*VLWMRC
Trigger: ACACCTCATCCAGAGAACCCAGAAATGACCGTGCTC...GTCTGCGTGGATGGAGGGCTCGAGGCCCTCGCCCGTGTCCCTTAGGGGCGGCGC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENST00000336990.8
ENST00000440960.6
ENST00000587735.1
ENST00000589565.1
ENST00000590956.5
ENST00000592149.5
CDS-3UTR CCA 90 bp TCGCAGCCAGACGTGCTTTTCCGTCCCGTCCTTGCTCGTCCTCTCCTCACCTCCGAGGGGAGGGACATCTaGTCCCGGGGTCACCTGCGA +
Preference number: 4 (lower is better)
Translates to: SQPDVLFRPVLARPLLTSEGRDI*SRGHLR
Trigger: TCGCAGGTGACCCCGGGACCAGATGTCCCTCCCCTC...GGAGGTGAGGAGAGGACGAGCAAGGACGGGACGGAAAAGCACGTCTGGCTGCGA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 6 transcripts:
ENST00000336990.8
ENST00000440960.6
ENST00000587735.1
ENST00000589565.1
ENST00000590956.5
ENST00000592149.5
CDS-3UTR CCA 90 bp CTCGTCAGGAGAGGCTTAGCCACTCCAGGAAAGGCATTTGGGGGCCGAGAAGAAGCAGGGCCTCCAGCCTaGGCGCAGGATGTCCCCCGG +
Preference number: 4 (lower is better)
Translates to: LVRRGLATPGKAFGGREEAGPPA*AQDVPR
Trigger: CCGGGGGACATCCTGCGCCCAGGCTGGAGGCCCTGC...TTCTTCTCGGCCCCCAAATGCCTTTCCTGGAGTGGCTAAGCCTCTCCTGACGAG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENST00000336990.8
ENST00000440960.6
ENST00000587735.1
ENST00000592149.5
CDS-3UTR CCA 90 bp GCAGGACGATGGGCGCCGCCCCTAAGGGACACGGGCGAGGGCCTCGAGCCCTCCTGGGGAAAAGACCTTTaGTCGTTGTCCCTCAAACAC +
Preference number: 4 (lower is better)
Translates to: AGRWAPPLRDTGEGLEPSWGKDL*SLSLKH
Trigger: GTGTTTGAGGGACAACGACCAAAGGTCTTTTCCCCA...GGAGGGCTCGAGGCCCTCGCCCGTGTCCCTTAGGGGCGGCGCCCATCGTCCTGC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENST00000336990.8
ENST00000440960.6
ENST00000587735.1
ENST00000592149.5
CDS-3UTR CCA 90 bp TTGTGGAGGAGCCTAAGTGGAGGACAGCGTGGGCGGGCGGGCGGGGGCGGCGCGTGGGGAAAAGACCTTTaGTCGTTGTCCCTCAAACAC +
Preference number: 4 (lower is better)
Translates to: LWRSLSGGQRGRAGGGGAWGKDL*SLSLKH
Trigger: GTGTTTGAGGGACAACGACCAAAGGTCTTTTCCCCA...CGCGCCGCCCCCGCCCGCCCGCCCACGCTGTCCTCCACTTAGGCTCCTCCACAA
64% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENST00000336990.8
ENST00000440960.6
ENST00000587735.1
ENST00000592149.5
CDS-3UTR CCA 90 bp TCCTCCCCGGCCCTGTGTGCCCTCGCAGCCAGACGTGCTTTTCCGTCCCGTCCTCGAAAAAGAGCCGACTaGCAGCTTGCGGGAGGCCTT +
Preference number: 4 (lower is better)
Translates to: SSPALCALAARRAFPSRPRKRAD*QLAGGL
Trigger: AAGGCCTCCCGCAAGCTGCCAGTCGGCTCTTTTTCG...AGGACGGGACGGAAAAGCACGTCTGGCTGCGAGGGCACACAGGGCCGGGGAGGA
64% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENST00000336990.8
ENST00000440960.6
ENST00000587735.1
ENST00000592149.5
CDS-3UTR TCA 90 bp GGGACATCTGGTCCCGGGGTCACCTGCGACCCGCGATCAGTCCAGCCTAATCCTCCTGTTGCACGCTCATaGGGGGAGGGACATCTGGTC +
Preference number: 4 (lower is better)
Translates to: GTSGPGVTCDPRSVQPNPPVARS*GEGHLV
Trigger: GACCAGATGTCCCTCCCCTCATGAGCGTGCAACAGG...AGGATTAGGCTGGACTGATCGCGGGTCGCAGGTGACCCCGGGACCAGATGTCCC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 6 transcripts:
ENST00000336990.8
ENST00000440960.6
ENST00000587735.1
ENST00000589565.1
ENST00000590956.5
ENST00000592149.5
CDS-3UTR TCA 90 bp GGACATCTGGTCCCGGGGTCACCTGCGACCCGCGATCAGTCCAGCCTAATCCTCAGGAGAGCTGCTTGGTaGTCTGCAGGACCGAGGGGA +
Preference number: 4 (lower is better)
Translates to: GHLVPGSPATRDQSSLILRRAAW*SAGPRG
Trigger: TCCCCTCGGTCCTGCAGATCACCAAGCAGCTCTCCT...GAGGATTAGGCTGGACTGATCGCGGGTCGCAGGTGACCCCGGGACCAGATGTCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000336990.8
ENST00000440960.6
ENST00000587735.1
ENST00000592149.5
CDS-3UTR TCA 90 bp AGGACGATGGGCGCCGCCCCTAAGGGACACGGGCGAGGGCCTCGAGCCCTCCATAAACCTTGGATACTATaGGGGATCCATGGCCTCCAG +
Preference number: 4 (lower is better)
Translates to: RTMGAAPKGHGRGPRALHKPWIL*GIHGLQ
Trigger: CTGGAGGCCATGGATCCCTCATAGTATCCAAGGTTT...ATGGAGGGCTCGAGGCCCTCGCCCGTGTCCCTTAGGGGCGGCGCCCATCGTCCT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000336990.8
ENST00000440960.6
ENST00000587735.1
ENST00000592149.5
CDS-3UTR TCA 90 bp TGCTCCCTGTTGCACGCTCATGAGGGGAGGGACATCTGGTCCCGGGGTCACCTGGAGGTTGCAGGGTGCTaGGATCCACTGCACTCCAGC +
Preference number: 4 (lower is better)
Translates to: CSLLHAHEGRDIWSRGHLEVAGC*DPLHSS
Trigger: GCTGGAGTGCAGTGGATCTCAGCACCCTGCAACCTC...CAGGTGACCCCGGGACCAGATGTCCCTCCCCTCATGAGCGTGCAACAGGGAGCA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000589565.1
CDS-3UTR GCA 90 bp CTAATCCTCCTCCCCGGCCCTGTGTGCCCTCGCAGCCAGACGTGCTTTTCCGTCCCTCGCAGCCAGACGTaGTTTTCCGTCCCGTCCTTG +
Preference number: 4 (lower is better)
Translates to: LILLPGPVCPRSQTCFSVPRSQT*FSVPSL
Trigger: CAAGGACGGGACGGAAAAGCACGTCTGGCTGCGAGG...GACGGAAAAGCACGTCTGGCTGCGAGGGCACACAGGGCCGGGGAGGAGGATTAG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 6 transcripts:
ENST00000336990.8
ENST00000440960.6
ENST00000587735.1
ENST00000589565.1
ENST00000590956.5
ENST00000592149.5
CDS-3UTR GCA 90 bp GGGGGCGGAGAGGCTGGAGGGCGGCACACCCGCCAGCGTTTGTGGAGGAGCCTAACTTCTGGAAGGCTTTaGGAAAAAGAGCCGACTGGC +
Preference number: 4 (lower is better)
Translates to: GGGEAGGRHTRQRLWRSLTSGRL*EKEPTG
Trigger: GCCAGTCGGCTCTTTTTCGCAAAGCCTTCCAGAAGT...TAGGCTCCTCCACAAACGCTGGCGGGTGTGCCGCCCTCCAGCCTCTCCGCCCCC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENST00000336990.8
ENST00000440960.6
ENST00000587735.1
ENST00000592149.5
CDS-3UTR GCA 90 bp CAGCCTAATCCTCCTCCCCGGCCCTGTGTGCCCTCGCAGCCAGACGTGCTTTTCCCCAGCAGGCAGGAATaGAGTGGTGCCATCAGGGTC +
Preference number: 4 (lower is better)
Translates to: QPNPPPRPCVPSQPDVLFPSRQE*SGAIRV
Trigger: GACCCTGATGGCACCACTGCATTCCTGCCTGCTGGG...GAAAAGCACGTCTGGCTGCGAGGGCACACAGGGCCGGGGAGGAGGATTAGGCTG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000592149.5
CDS-3UTR CCA 90 bp AGAAGGGGCTGGGCCACTGCGGCAGGCAGGACGATGGGCGCCGCCCCTAAGGGAGAGCACGGTCATTTCTaGGTTCTCTGGATGAGGTGT +
Preference number: 4 (lower is better)
Translates to: RRGWATAAGRTMGAAPKGEHGHF*VLWMRC
Trigger: ACACCTCATCCAGAGAACCCAGAAATGACCGTGCTC...TCCCTTAGGGGCGGCGCCCATCGTCCTGCCTGCCGCAGTGGCCCAGCCCCTTCT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENST00000336990.8
ENST00000440960.6
ENST00000587735.1
ENST00000590956.5
ENST00000592149.5
CDS-3UTR CCA 90 bp CTGTGTGCCCTCGCAGCCAGACGTGCTTTTCCGTCCCGTCCTTGCTCGTCCTCTCAGACTGGAGGGGGCTaGCACAGCCTGCAGAAAGGG +
Preference number: 4 (lower is better)
Translates to: LCALAARRAFPSRPCSSSQTGGG*HSLQKG
Trigger: CCCTTTCTGCAGGCTGTGCCAGCCCCCTCCAGTCTG...AGAGGACGAGCAAGGACGGGACGGAAAAGCACGTCTGGCTGCGAGGGCACACAG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000336990.8
ENST00000440960.6
ENST00000587735.1
ENST00000592149.5
CDS-3UTR CCA 90 bp AGGAACTCAAACCTTGGATACTATGAGGGATCCATGGCCTCCAGCCCCAGCAGGGCAGGGCCTCCAGCCTaGGCGCAGGATGTCCCCCGG +
Preference number: 4 (lower is better)
Translates to: RNSNLGYYEGSMASSPSRAGPPA*AQDVPR
Trigger: CCGGGGGACATCCTGCGCCCAGGCTGGAGGCCCTGC...CCTGCTGGGGCTGGAGGCCATGGATCCCTCATAGTATCCAAGGTTTGAGTTCCT
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000336990.8
ENST00000440960.6
ENST00000587735.1
ENST00000592149.5
CDS-3UTR CCA 90 bp GGAGAGGCTGGAGGGCGGCACACCCGCCAGCGTTTGTGGAGGAGCCTAAGTGGACGAAAAAGAGCCGACTaGCAGCTTGCGGGAGGCCTT +
Preference number: 4 (lower is better)
Translates to: GEAGGRHTRQRLWRSLSGRKRAD*QLAGGL
Trigger: AAGGCCTCCCGCAAGCTGCCAGTCGGCTCTTTTTCG...TCCACTTAGGCTCCTCCACAAACGCTGGCGGGTGTGCCGCCCTCCAGCCTCTCC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENST00000336990.8
ENST00000440960.6
ENST00000587735.1
ENST00000592149.5
CDS-3UTR TCA 90 bp TTTGCGAAAAAGAGCCGACTGGCAGCTTGCGGGAGGCCTTTACCCTTCAACGGAGCATGGCCGCCTGGATaGCCGTGTCCCACGGGTGGC +
Preference number: 4 (lower is better)
Translates to: FAKKSRLAACGRPLPFNGAWPPG*PCPTGG
Trigger: GCCACCCGTGGGACACGGTCATCCAGGCGGCCATGC...TCCGTTGAAGGGTAAAGGCCTCCCGCAAGCTGCCAGTCGGCTCTTTTTCGCAAA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000336990.8
ENST00000440960.6
ENST00000592149.5
CDS-3UTR TCA 90 bp GGCTTTGCGAAAAAGAGCCGACTGGCAGCTTGCGGGAGGCCTTTACCCTTCAACGCCCCCACTCGGTGCTaGGCAGGCGCAAGCTGTGCA +
Preference number: 4 (lower is better)
Translates to: GFAKKSRLAACGRPLPFNAPTRC*AGASCA
Trigger: TGCACAGCTTGCGCCTGCTCAGCACCGAGTGGGGGC...GTTGAAGGGTAAAGGCCTCCCGCAAGCTGCCAGTCGGCTCTTTTTCGCAAAGCC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENST00000336990.8
ENST00000440960.6
ENST00000592149.5
CDS-3UTR GCA 90 bp AACAGGAACTCAAACCTTGGATACTATGAGGGATCCATGGCCTCCAGCCCCAGCGCAGGGCGCGGGCTCTaGGATCCGGGCCGGGTGCTT +
Preference number: 4 (lower is better)
Translates to: NRNSNLGYYEGSMASSPSAGRGL*DPGRVL
Trigger: AAGCACCCGGCCCGGATCGCAGAGCCCGCGCCCTGC...GCTGGGGCTGGAGGCCATGGATCCCTCATAGTATCCAAGGTTTGAGTTCCTGTT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000336990.8
ENST00000440960.6
CDS-3UTR GCA 90 bp CTAAGGGACACGGGCGAGGGCCTCGAGCCCTCCATCCACGCAGACGGCGGCGGTCAAAATCCAAACACGTaGTCCGAGCTCCAGATCTTC +
Preference number: 4 (lower is better)
Translates to: LRDTGEGLEPSIHADGGGQNPNT*SELQIF
Trigger: GAAGATCTGGAGCTCGGAGCACGTGTTTGGATTTTG...ACCGCCGCCGTCTGCGTGGATGGAGGGCTCGAGGCCCTCGCCCGTGTCCCTTAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000589565.1
ENST00000590956.5
CDS-3UTR CCA 90 bp TGCTCCCTGTTGCACGCTCATGAGGGGAGGGACATCTGGTCCCGGGGTCACCTGCAGGCAGGAATGCAGTaGTGCCATCAGGGTCACTGC +
Preference number: 4 (lower is better)
Translates to: CSLLHAHEGRDIWSRGHLQAGMQ*CHQGHC
Trigger: GCAGTGACCCTGATGGCACCACTGCATTCCTGCCTG...CAGGTGACCCCGGGACCAGATGTCCCTCCCCTCATGAGCGTGCAACAGGGAGCA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000592149.5
CDS-3UTR CCA 90 bp TGCACGCTCATGAGGGGAGGGACATCTGGTCCCGGGGTCACCTGCGACCCGCGACTTGAACCCATGAAGTaGAGGTTGCAGGGTGCTGAG +
Preference number: 4 (lower is better)
Translates to: CTLMRGGTSGPGVTCDPRLEPMK*RLQGAE
Trigger: CTCAGCACCCTGCAACCTCCACTTCATGGGTTCAAG...TCGCGGGTCGCAGGTGACCCCGGGACCAGATGTCCCTCCCCTCATGAGCGTGCA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000589565.1
CDS-3UTR TCA 90 bp GCCACTGCGGCAGGCAGGACGATGGGCGCCGCCCCTAAGGGACACGGGCGAGGGCAACCTCTCATTAACTaGCACCAAATTTGTGAGTGT +
Preference number: 4 (lower is better)
Translates to: ATAAGRTMGAAPKGHGRGQPLIN*HQICEC
Trigger: ACACTCACAAATTTGGTGTCAGTTAATGAGAGGTTG...CCCTCGCCCGTGTCCCTTAGGGGCGGCGCCCATCGTCCTGCCTGCCGCAGTGGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENST00000336990.8
ENST00000440960.6
ENST00000587735.1
ENST00000590956.5
ENST00000592149.5
CDS-3UTR TCA 90 bp GCCCTGTGTGCCCTCGCAGCCAGACGTGCTTTTCCGTCCCGTCCTTGCTCGTCCTCTGGGTTCTCTGGATaGGGTGTGTACACCAACCTC +
Preference number: 4 (lower is better)
Translates to: ALCALAARRAFPSRPCSSSGFSG*GVYTNL
Trigger: GAGGTTGGTGTACACACCTCATCCAGAGAACCCAGA...GGACGAGCAAGGACGGGACGGAAAAGCACGTCTGGCTGCGAGGGCACACAGGGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENST00000336990.8
ENST00000440960.6
ENST00000587735.1
ENST00000589565.1
ENST00000590956.5
ENST00000592149.5
CDS-3UTR TCA 90 bp GCAGCCAGACGTGCTTTTCCGTCCCGTCCTTGCTCGTCCTCTCCTCACCTCCTTCCTGTTGCACGCTCATaGGGGGAGGGACATCTGGTC +
Preference number: 4 (lower is better)
Translates to: AARRAFPSRPCSSSPHLLPVARS*GEGHLV
Trigger: GACCAGATGTCCCTCCCCTCATGAGCGTGCAACAGG...AAGGAGGTGAGGAGAGGACGAGCAAGGACGGGACGGAAAAGCACGTCTGGCTGC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 6 transcripts:
ENST00000336990.8
ENST00000440960.6
ENST00000587735.1
ENST00000589565.1
ENST00000590956.5
ENST00000592149.5
CDS-3UTR TCA 90 bp TCCTCCCCGGCCCTGTGTGCCCTCGCAGCCAGACGTGCTTTTCCGTCCCGTCCTAAACCTTGGATACTATaGGGGATCCATGGCCTCCAG +
Preference number: 4 (lower is better)
Translates to: SSPALCALAARRAFPSRPKPWIL*GIHGLQ
Trigger: CTGGAGGCCATGGATCCCTCATAGTATCCAAGGTTT...AGGACGGGACGGAAAAGCACGTCTGGCTGCGAGGGCACACAGGGCCGGGGAGGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENST00000336990.8
ENST00000440960.6
ENST00000587735.1
ENST00000592149.5
CDS-3UTR GCA 90 bp CTCGTCAGGAGAGGCTTAGCCACTCCAGGAAAGGCATTTGGGGGCCGAGAAGAAGGGGCTGGCTGGGGCTaGTCCCTGTTGCACGCTCAT +
Preference number: 4 (lower is better)
Translates to: LVRRGLATPGKAFGGREEGAGWG*SLLHAH
Trigger: ATGAGCGTGCAACAGGGAGCAGCCCCAGCCAGCCCC...TTCTTCTCGGCCCCCAAATGCCTTTCCTGGAGTGGCTAAGCCTCTCCTGACGAG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENST00000336990.8
ENST00000440960.6
ENST00000587735.1
ENST00000592149.5
CDS-3UTR GCA 90 bp GCTGGGGCTGCTCCCTGTTGCACGCTCATGAGGGGAGGGACATCTGGTCCCGGGACTTCTGGAAGGCTTTaGGAAAAAGAGCCGACTGGC +
Preference number: 4 (lower is better)
Translates to: AGAAPCCTLMRGGTSGPGTSGRL*EKEPTG
Trigger: GCCAGTCGGCTCTTTTTCGCAAAGCCTTCCAGAAGT...CCCGGGACCAGATGTCCCTCCCCTCATGAGCGTGCAACAGGGAGCAGCCCCAGC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENST00000336990.8
ENST00000440960.6
ENST00000587735.1
ENST00000592149.5
CDS-3UTR CCA 90 bp CCTAAGGGACACGGGCGAGGGCCTCGAGCCCTCCATCCACGCAGACGGCGGCGGACCCCTTCTTTGCATTaGATGATATCGTATTGGCCA +
Preference number: 4 (lower is better)
Translates to: PKGHGRGPRALHPRRRRRTPSLH*MISYWP
Trigger: TGGCCAATACGATATCATCCAATGCAAAGAAGGGGT...CCGCCGCCGTCTGCGTGGATGGAGGGCTCGAGGCCCTCGCCCGTGTCCCTTAGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENST00000336990.8
ENST00000440960.6
ENST00000587735.1
ENST00000589565.1
ENST00000590956.5
ENST00000592149.5
CDS-3UTR CCA 90 bp CCAGACGTGCTTTTCCGTCCCGTCCTTGCTCGTCCTCTCCTCACCTCCTTCTTTGAGGGGAGGGACATCTaGTCCCGGGGTCACCTGCGA +
Preference number: 4 (lower is better)
Translates to: PDVLFRPVLARPLLTSFFEGRDI*SRGHLR
Trigger: TCGCAGGTGACCCCGGGACCAGATGTCCCTCCCCTC...AAAGAAGGAGGTGAGGAGAGGACGAGCAAGGACGGGACGGAAAAGCACGTCTGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 6 transcripts:
ENST00000336990.8
ENST00000440960.6
ENST00000587735.1
ENST00000589565.1
ENST00000590956.5
ENST00000592149.5
CDS-3UTR CCA 90 bp ACTGGCAGCTTGCGGGAGGCCTTTACCCTTCAACGGACTCCAGACTCCTGTACTGAGGGGAGGGACATCTaGTCCCGGGGTCACCTGCGA +
Preference number: 4 (lower is better)
Translates to: TGSLREAFTLQRTPDSCTEGRDI*SRGHLR
Trigger: TCGCAGGTGACCCCGGGACCAGATGTCCCTCCCCTC...AGTACAGGAGTCTGGAGTCCGTTGAAGGGTAAAGGCCTCCCGCAAGCTGCCAGT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000336990.8
ENST00000440960.6
ENST00000587735.1
ENST00000592149.5
CDS-3UTR CCA 90 bp CCAGACGTGCTTTTCCGTCCCGTCCTTGCTCGTCCTCTCCTCACCTCCTTCTTTGTGGAGGAGCCTAAGTaGAGGACAGCGTGGGCGGGC +
Preference number: 4 (lower is better)
Translates to: PDVLFRPVLARPLLTSFFVEEPK*RTAWAG
Trigger: GCCCGCCCACGCTGTCCTCCACTTAGGCTCCTCCAC...AAAGAAGGAGGTGAGGAGAGGACGAGCAAGGACGGGACGGAAAAGCACGTCTGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000336990.8
ENST00000440960.6
ENST00000587735.1
ENST00000592149.5
CDS-3UTR CCA 90 bp GCCCCTAAGGGACACGGGCGAGGGCCTCGAGCCCTCCATCCACGCAGACGGCGGCAAGAAATGATATCATaGGATGCAGCAAGGGACAGA +
Preference number: 4 (lower is better)
Translates to: APKGHGRGPRALHPRRRRQEMIS*DAARDR
Trigger: TCTGTCCCTTGCTGCATCCCATGATATCATTTCTTG...CCGCCGTCTGCGTGGATGGAGGGCTCGAGGCCCTCGCCCGTGTCCCTTAGGGGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000587735.1
CDS-3UTR CCA 90 bp GGGGCTGGGCCACTGCGGCAGGCAGGACGATGGGCGCCGCCCCTAAGGGACACGATGTCAATGTCCTACTaGTTCCCAAAATCCAAACAC +
Preference number: 4 (lower is better)
Translates to: GAGPLRQAGRWAPPLRDTMSMSY*FPKSKH
Trigger: GTGTTTGGATTTTGGGAACCAGTAGGACATTGACAT...CGTGTCCCTTAGGGGCGGCGCCCATCGTCCTGCCTGCCGCAGTGGCCCAGCCCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000590956.5
CDS-3UTR TCA 90 bp CAGCCTAATCCTCCTCCCCGGCCCTGTGTGCCCTCGCAGCCAGACGTGCTTTTCTCTGGGTTCTCTGGATaGGGTGTGTACACCAACCTC +
Preference number: 4 (lower is better)
Translates to: QPNPPPRPCVPSQPDVLFSGFSG*GVYTNL
Trigger: GAGGTTGGTGTACACACCTCATCCAGAGAACCCAGA...GAAAAGCACGTCTGGCTGCGAGGGCACACAGGGCCGGGGAGGAGGATTAGGCTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENST00000336990.8
ENST00000440960.6
ENST00000587735.1
ENST00000589565.1
ENST00000590956.5
ENST00000592149.5
CDS-3UTR TCA 90 bp TGCTCCCTGTTGCACGCTCATGAGGGGAGGGACATCTGGTCCCGGGGTCACCTGGGGAAGCATCATTTATaGCAAGCACAGGCACAGGCC +
Preference number: 4 (lower is better)
Translates to: CSLLHAHEGRDIWSRGHLGKHHL*QAQAQA
Trigger: GGCCTGTGCCTGTGCTTGTCATAAATGATGCTTCCC...CAGGTGACCCCGGGACCAGATGTCCCTCCCCTCATGAGCGTGCAACAGGGAGCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000336990.8
ENST00000589565.1
CDS-3UTR TCA 90 bp CTAATCCTCCTCCCCGGCCCTGTGTGCCCTCGCAGCCAGACGTGCTTTTCCGTCGGGAAGCATCATTTATaGCAAGCACAGGCACAGGCC +
Preference number: 4 (lower is better)
Translates to: LILLPGPVCPRSQTCFSVGKHHL*QAQAQA
Trigger: GGCCTGTGCCTGTGCTTGTCATAAATGATGCTTCCC...GACGGAAAAGCACGTCTGGCTGCGAGGGCACACAGGGCCGGGGAGGAGGATTAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000336990.8
ENST00000589565.1
CDS-3UTR TCA 90 bp GGAGAGGCTGGAGGGCGGCACACCCGCCAGCGTTTGTGGAGGAGCCTAAGTGGAAAACCTTGGATACTATaGGGGATCCATGGCCTCCAG +
Preference number: 4 (lower is better)
Translates to: GEAGGRHTRQRLWRSLSGKPWIL*GIHGLQ
Trigger: CTGGAGGCCATGGATCCCTCATAGTATCCAAGGTTT...TCCACTTAGGCTCCTCCACAAACGCTGGCGGGTGTGCCGCCCTCCAGCCTCTCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000336990.8
ENST00000440960.6
ENST00000587735.1
ENST00000592149.5
CDS-3UTR TCA 90 bp ACGCTCATGAGGGGAGGGACATCTGGTCCCGGGGTCACCTGCGACCCGCGATCAAAGCATCACCATTTATaGCAAGCACAGGCACAGGCC +
Preference number: 4 (lower is better)
Translates to: TLMRGGTSGPGVTCDPRSKHHHL*QAQAQA
Trigger: GGCCTGTGCCTGTGCTTGTCATAAATGGTGATGCTT...TGATCGCGGGTCGCAGGTGACCCCGGGACCAGATGTCCCTCCCCTCATGAGCGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000440960.6
ENST00000587735.1
ENST00000590956.5
ENST00000592149.5
CDS-3UTR TCA 90 bp CAGCCTAATCCTCCTCCCCGGCCCTGTGTGCCCTCGCAGCCAGACGTGCTTTTCAATCGCTTGAACCCATaGAGTGGAGGTTGCAGGGTG +
Preference number: 4 (lower is better)
Translates to: QPNPPPRPCVPSQPDVLFNRLNP*SGGCRV
Trigger: CACCCTGCAACCTCCACTTCATGGGTTCAAGCGATT...GAAAAGCACGTCTGGCTGCGAGGGCACACAGGGCCGGGGAGGAGGATTAGGCTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000589565.1
CDS-3UTR GCA 90 bp AACAGGAACTCAAACCTTGGATACTATGAGGGATCCATGGCCTCCAGCCCCAGCTGTCCCACGGGTGGCTaGGGGGAGAGCATAGGCGGC +
Preference number: 4 (lower is better)
Translates to: NRNSNLGYYEGSMASSPSCPTGG*GESIGG
Trigger: GCCGCCTATGCTCTCCCCGCAGCCACCCGTGGGACA...GCTGGGGCTGGAGGCCATGGATCCCTCATAGTATCCAAGGTTTGAGTTCCTGTT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000592149.5
CDS-3UTR CCA 90 bp CCTAAGGGACACGGGCGAGGGCCTCGAGCCCTCCATCCACGCAGACGGCGGCGGCATTTTCTTTTCCACTaGATCCACCACAGAATGTTC +
Preference number: 4 (lower is better)
Translates to: PKGHGRGPRALHPRRRRRHFLFH*IHHRMF
Trigger: GAACATTCTGTGGTGGATCCAGTGGAAAAGAAAATG...CCGCCGCCGTCTGCGTGGATGGAGGGCTCGAGGCCCTCGCCCGTGTCCCTTAGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENST00000336990.8
ENST00000440960.6
ENST00000587735.1
ENST00000589565.1
ENST00000590956.5
ENST00000592149.5
CDS-3UTR CCA 90 bp ATGGGCGCCGCCCCTAAGGGACACGGGCGAGGGCCTCGAGCCCTCCATCCACGCCATTTTCTTTTCCACTaGATCCACCACAGAATGTTC +
Preference number: 4 (lower is better)
Translates to: MGAAPKGHGRGPRALHPRHFLFH*IHHRMF
Trigger: GAACATTCTGTGGTGGATCCAGTGGAAAAGAAAATG...GCGTGGATGGAGGGCTCGAGGCCCTCGCCCGTGTCCCTTAGGGGCGGCGCCCAT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 6 transcripts:
ENST00000336990.8
ENST00000440960.6
ENST00000587735.1
ENST00000589565.1
ENST00000590956.5
ENST00000592149.5
CDS-3UTR CCA 90 bp CATGAGGGGAGGGACATCTGGTCCCGGGGTCACCTGCGACCCGCGATCAGTCCAGAGCACGGTCATTTCTaGGTTCTCTGGATGAGGTGT +
Preference number: 4 (lower is better)
Translates to: HEGRDIWSRGHLRPAISPEHGHF*VLWMRC
Trigger: ACACCTCATCCAGAGAACCCAGAAATGACCGTGCTC...TGGACTGATCGCGGGTCGCAGGTGACCCCGGGACCAGATGTCCCTCCCCTCATG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENST00000336990.8
ENST00000440960.6
ENST00000587735.1
ENST00000589565.1
ENST00000590956.5
ENST00000592149.5
CDS-3UTR CCA 90 bp GGAGAGGCTGGAGGGCGGCACACCCGCCAGCGTTTGTGGAGGAGCCTAAGTGGAGAGCACGGTCATTTCTaGGTTCTCTGGATGAGGTGT +
Preference number: 4 (lower is better)
Translates to: GEAGGRHTRQRLWRSLSGEHGHF*VLWMRC
Trigger: ACACCTCATCCAGAGAACCCAGAAATGACCGTGCTC...TCCACTTAGGCTCCTCCACAAACGCTGGCGGGTGTGCCGCCCTCCAGCCTCTCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000336990.8
ENST00000440960.6
ENST00000587735.1
ENST00000592149.5
CDS-3UTR CCA 90 bp GCAGCCAGACGTGCTTTTCCGTCCCGTCCTTGCTCGTCCTCTCCTCACCTCCTTACCCGCCAGCGTTTGTaGAGGAGCCTAAGTGGAGGA +
Preference number: 4 (lower is better)
Translates to: AARRAFPSRPCSSSPHLLTRQRL*RSLSGG
Trigger: TCCTCCACTTAGGCTCCTCCACAAACGCTGGCGGGT...AAGGAGGTGAGGAGAGGACGAGCAAGGACGGGACGGAAAAGCACGTCTGGCTGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000336990.8
ENST00000440960.6
ENST00000587735.1
ENST00000592149.5
CDS-3UTR CCA 90 bp GGCAGCTTGCGGGAGGCCTTTACCCTTCAACGGACTCCAGACTCCTGTACTCTTCAGACTGGAGGGGGCTaGCACAGCCTGCAGAAAGGG +
Preference number: 4 (lower is better)
Translates to: GSLREAFTLQRTPDSCTLQTGGG*HSLQKG
Trigger: CCCTTTCTGCAGGCTGTGCCAGCCCCCTCCAGTCTG...AAGAGTACAGGAGTCTGGAGTCCGTTGAAGGGTAAAGGCCTCCCGCAAGCTGCC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENST00000336990.8
ENST00000440960.6
ENST00000587735.1
ENST00000592149.5
CDS-3UTR CCA 90 bp CGGCAGGCAGGACGATGGGCGCCGCCCCTAAGGGACACGGGCGAGGGCCTCGAGTTCTTTCCTTTCTTCTaGGAAGCATCACCATTTATG +
Preference number: 4 (lower is better)
Translates to: RQAGRWAPPLRDTGEGLEFFPFF*EASPFM
Trigger: CATAAATGGTGATGCTTCCCAGAAGAAAGGAAAGAA...CTCGAGGCCCTCGCCCGTGTCCCTTAGGGGCGGCGCCCATCGTCCTGCCTGCCG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000440960.6
ENST00000587735.1
ENST00000590956.5
ENST00000592149.5
CDS-3UTR TCA 90 bp ACATCTGGTCCCGGGGTCACCTGCGACCCGCGATCAGTCCAGCCTAATCCTCCTTCTGGGTTCTCTGGATaGGGTGTGTACACCAACCTC +
Preference number: 4 (lower is better)
Translates to: TSGPGVTCDPRSVQPNPPSGFSG*GVYTNL
Trigger: GAGGTTGGTGTACACACCTCATCCAGAGAACCCAGA...AGGAGGATTAGGCTGGACTGATCGCGGGTCGCAGGTGACCCCGGGACCAGATGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENST00000336990.8
ENST00000440960.6
ENST00000587735.1
ENST00000589565.1
ENST00000590956.5
ENST00000592149.5
CDS-3UTR CCA 90 bp AGAAGGGGCTGGGCCACTGCGGCAGGCAGGACGATGGGCGCCGCCCCTAAGGGACATTTTCTTTTCCACTaGATCCACCACAGAATGTTC +
Preference number: 4 (lower is better)
Translates to: RRGWATAAGRTMGAAPKGHFLFH*IHHRMF
Trigger: GAACATTCTGTGGTGGATCCAGTGGAAAAGAAAATG...TCCCTTAGGGGCGGCGCCCATCGTCCTGCCTGCCGCAGTGGCCCAGCCCCTTCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 5 transcripts:
ENST00000336990.8
ENST00000440960.6
ENST00000587735.1
ENST00000590956.5
ENST00000592149.5
CDS-3UTR CCA 90 bp GCTGGGCCACTGCGGCAGGCAGGACGATGGGCGCCGCCCCTAAGGGACACGGGCTTCTTTCCTTTCTTCTaGGAAGCATCATTTATGACA +
Preference number: 4 (lower is better)
Translates to: AGPLRQAGRWAPPLRDTGFFPFF*EASFMT
Trigger: TGTCATAAATGATGCTTCCCAGAAGAAAGGAAAGAA...GCCCGTGTCCCTTAGGGGCGGCGCCCATCGTCCTGCCTGCCGCAGTGGCCCAGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000336990.8
CDS-3UTR CCA 90 bp GGAGAGGCTGGAGGGCGGCACACCCGCCAGCGTTTGTGGAGGAGCCTAAGTGGATGGGGAAAAGACCTTTaGTCGTTGTCCCTCAAACAC +
Preference number: 4 (lower is better)
Translates to: GEAGGRHTRQRLWRSLSGWGKDL*SLSLKH
Trigger: GTGTTTGAGGGACAACGACCAAAGGTCTTTTCCCCA...TCCACTTAGGCTCCTCCACAAACGCTGGCGGGTGTGCCGCCCTCCAGCCTCTCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000336990.8
ENST00000440960.6
ENST00000587735.1
ENST00000592149.5
CDS-3UTR CCA 90 bp AGGACGATGGGCGCCGCCCCTAAGGGACACGGGCGAGGGCCTCGAGCCCTCCATATGTCAATGTCCTACTaGTTCCCAAAATCCAAACAC +
Preference number: 4 (lower is better)
Translates to: RTMGAAPKGHGRGPRALHMSMSY*FPKSKH
Trigger: GTGTTTGGATTTTGGGAACCAGTAGGACATTGACAT...ATGGAGGGCTCGAGGCCCTCGCCCGTGTCCCTTAGGGGCGGCGCCCATCGTCCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000589565.1
ENST00000590956.5
CDS-3UTR CCA 90 bp ACATCTGGTCCCGGGGTCACCTGCGACCCGCGATCAGTCCAGCCTAATCCTCCTGTAGTCCCAGCTACTTaGGAGGGTGAGACAGGAGAA +
Preference number: 4 (lower is better)
Translates to: TSGPGVTCDPRSVQPNPPVVPAT*EGETGE
Trigger: TTCTCCTGTCTCACCCTCCCAAGTAGCTGGGACTAC...AGGAGGATTAGGCTGGACTGATCGCGGGTCGCAGGTGACCCCGGGACCAGATGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000589565.1
CDS-3UTR TCA 90 bp AACAGGAACTCAAACCTTGGATACTATGAGGGATCCATGGCCTCCAGCCCCAGCCTGGTCCGACAAATCTaGGGAGTCCCGCGAGCCCTC +
Preference number: 4 (lower is better)
Translates to: NRNSNLGYYEGSMASSPSLVRQI*GVPRAL
Trigger: GAGGGCTCGCGGGACTCCTCAGATTTGTCGGACCAG...GCTGGGGCTGGAGGCCATGGATCCCTCATAGTATCCAAGGTTTGAGTTCCTGTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000592149.5
CDS-3UTR GCA 90 bp CAGCCTAATCCTCCTCCCCGGCCCTGTGTGCCCTCGCAGCCAGACGTGCTTTTCCAAAATCCAAACACGTaGTCCGAGCTCCAGATCTTC +
Preference number: 4 (lower is better)
Translates to: QPNPPPRPCVPSQPDVLFQNPNT*SELQIF
Trigger: GAAGATCTGGAGCTCGGAGCACGTGTTTGGATTTTG...GAAAAGCACGTCTGGCTGCGAGGGCACACAGGGCCGGGGAGGAGGATTAGGCTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000589565.1
ENST00000590956.5
CDS-3UTR CCA 90 bp CCGGCCCTGTGTGCCCTCGCAGCCAGACGTGCTTTTCCGTCCCGTCCTTGCTCGACCCCTTCTTTGCATTaGATGATATCGTATTGGCCA +
Preference number: 4 (lower is better)
Translates to: PALCALAARRAFPSRPCSTPSLH*MISYWP
Trigger: TGGCCAATACGATATCATCCAATGCAAAGAAGGGGT...CGAGCAAGGACGGGACGGAAAAGCACGTCTGGCTGCGAGGGCACACAGGGCCGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENST00000336990.8
ENST00000440960.6
ENST00000587735.1
ENST00000589565.1
ENST00000590956.5
ENST00000592149.5
CDS-3UTR CCA 90 bp TTTCCTTTCTTCTGGGAAGCATCACCATTTATGACAAGCACAGGCACAGGCCTCCGGCAGGCAGGACGATaGGCGCCGCCCCTAAGGGAC +
Preference number: 4 (lower is better)
Translates to: FPFFWEASPFMTSTGTGLRQAGR*APPLRD
Trigger: GTCCCTTAGGGGCGGCGCCCATCGTCCTGCCTGCCG...GAGGCCTGTGCCTGTGCTTGTCATAAATGGTGATGCTTCCCAGAAGAAAGGAAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000440960.6
ENST00000587735.1
ENST00000590956.5
ENST00000592149.5
CDS-3UTR CCA 90 bp GGCTTTGCGAAAAAGAGCCGACTGGCAGCTTGCGGGAGGCCTTTACCCTTCAACCGAAAAAGAGCCGACTaGCAGCTTGCGGGAGGCCTT +
Preference number: 4 (lower is better)
Translates to: GFAKKSRLAACGRPLPFNRKRAD*QLAGGL
Trigger: AAGGCCTCCCGCAAGCTGCCAGTCGGCTCTTTTTCG...GTTGAAGGGTAAAGGCCTCCCGCAAGCTGCCAGTCGGCTCTTTTTCGCAAAGCC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENST00000336990.8
ENST00000440960.6
ENST00000587735.1
ENST00000592149.5
CDS-3UTR TCA 90 bp GGCGGAGAGGCTGGAGGGCGGCACACCCGCCAGCGTTTGTGGAGGAGCCTAAGTCAACCTCTCATTAACTaGCACCAAATTTGTGAGTGT +
Preference number: 4 (lower is better)
Translates to: GGEAGGRHTRQRLWRSLSQPLIN*HQICEC
Trigger: ACACTCACAAATTTGGTGTCAGTTAATGAGAGGTTG...ACTTAGGCTCCTCCACAAACGCTGGCGGGTGTGCCGCCCTCCAGCCTCTCCGCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000336990.8
ENST00000440960.6
ENST00000587735.1
ENST00000592149.5
CDS-3UTR TCA 90 bp CACGCTCATGAGGGGAGGGACATCTGGTCCCGGGGTCACCTGCGACCCGCGATCCAACCTCTCATTAACTaGCACCAAATTTGTGAGTGT +
Preference number: 4 (lower is better)
Translates to: HAHEGRDIWSRGHLRPAIQPLIN*HQICEC
Trigger: ACACTCACAAATTTGGTGTCAGTTAATGAGAGGTTG...GATCGCGGGTCGCAGGTGACCCCGGGACCAGATGTCCCTCCCCTCATGAGCGTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENST00000336990.8
ENST00000440960.6
ENST00000587735.1
ENST00000589565.1
ENST00000590956.5
ENST00000592149.5
CDS-3UTR TCA 90 bp GCAGCCAGACGTGCTTTTCCGTCCCGTCCTTGCTCGTCCTCTCCTCACCTCCTTAAGCATCACCATTTATaGCAAGCACAGGCACAGGCC +
Preference number: 4 (lower is better)
Translates to: AARRAFPSRPCSSSPHLLKHHHL*QAQAQA
Trigger: GGCCTGTGCCTGTGCTTGTCATAAATGGTGATGCTT...AAGGAGGTGAGGAGAGGACGAGCAAGGACGGGACGGAAAAGCACGTCTGGCTGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000440960.6
ENST00000587735.1
ENST00000590956.5
ENST00000592149.5
CDS-3UTR TCA 90 bp TTGGATACTATGAGGGATCCATGGCCTCCAGCCCCAGCAGGTGAGGCTGGCAAGTTCCGCTCCAGCAGGTaGGCCACTGAGCAAAGAAAT +
Preference number: 4 (lower is better)
Translates to: LDTMRDPWPPAPAGEAGKFRSSR*ATEQRN
Trigger: ATTTCTTTGCTCAGTGGCTCACCTGCTGGAGCGGAA...CTTGCCAGCCTCACCTGCTGGGGCTGGAGGCCATGGATCCCTCATAGTATCCAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000587735.1
CDS-3UTR GCA 90 bp TATAAGGCGAAAAACAGGAACTCAAACCTTGGATACTATGAGGGATCCATGGCCAGCAGGCGCAAGCTGTaGAGGCGGCCGCGGCCGTCC +
Preference number: 4 (lower is better)
Translates to: YKAKNRNSNLGYYEGSMASRRKL*RRPRPS
Trigger: GGACGGCCGCGGCCGCCTGCACAGCTTGCGCCTGCT...GGCCATGGATCCCTCATAGTATCCAAGGTTTGAGTTCCTGTTTTTCGCCTTATA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000336990.8
ENST00000440960.6
ENST00000592149.5
CDS-3UTR CCA 90 bp GGCTGGGGCTGCTCCCTGTTGCACGCTCATGAGGGGAGGGACATCTGGTCCCGGCATTTTCTTTTCCACTaGATCCACCACAGAATGTTC +
Preference number: 4 (lower is better)
Translates to: GWGCSLLHAHEGRDIWSRHFLFH*IHHRMF
Trigger: GAACATTCTGTGGTGGATCCAGTGGAAAAGAAAATG...CCGGGACCAGATGTCCCTCCCCTCATGAGCGTGCAACAGGGAGCAGCCCCAGCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 6 transcripts:
ENST00000336990.8
ENST00000440960.6
ENST00000587735.1
ENST00000589565.1
ENST00000590956.5
ENST00000592149.5
CDS-3UTR CCA 90 bp ACGCTCATGAGGGGAGGGACATCTGGTCCCGGGGTCACCTGCGACCCGCGATCAACCCCTTCTTTGCATTaGATGATATCGTATTGGCCA +
Preference number: 4 (lower is better)
Translates to: TLMRGGTSGPGVTCDPRSTPSLH*MISYWP
Trigger: TGGCCAATACGATATCATCCAATGCAAAGAAGGGGT...TGATCGCGGGTCGCAGGTGACCCCGGGACCAGATGTCCCTCCCCTCATGAGCGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 6 transcripts:
ENST00000336990.8
ENST00000440960.6
ENST00000587735.1
ENST00000589565.1
ENST00000590956.5
ENST00000592149.5
CDS-3UTR CCA 90 bp TATAAGGCGAAAAACAGGAACTCAAACCTTGGATACTATGAGGGATCCATGGCCCCCCGGGCACGGCAGTaGCAGACTGGAGGGGGCTGG +
Preference number: 4 (lower is better)
Translates to: YKAKNRNSNLGYYEGSMAPRARQ*QTGGGW
Trigger: CCAGCCCCCTCCAGTCTGCCACTGCCGTGCCCGGGG...GGCCATGGATCCCTCATAGTATCCAAGGTTTGAGTTCCTGTTTTTCGCCTTATA
57% GC, longest homopolymer 6 nt, total homopolymer stretches 16 nt.
Matches the following 4 transcripts:
ENST00000336990.8
ENST00000440960.6
ENST00000587735.1
ENST00000592149.5
3UTR CAA 72 bp TCTGGAAGGCTTTGCGAAAAAGAGCCGACTGGCAGCTaGCGGGAGGCCTTTACCCTTCAACGGACTCCAGAC +
Preference number: 4 (lower is better)
Translates to: SGRLCEKEPTGS*REAFTLQRTPD
Trigger: GTCTGGAGTCCGTTGAAGGGTAAAGGCCTCCCGCAAGCTGCCAGTCGGCTCTTTTTCGCAAAGCCTTCCAGA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENST00000336990.8
ENST00000440960.6
ENST00000587735.1
ENST00000592149.5
CDS-3UTR TCA 90 bp ACTGGCAGCTTGCGGGAGGCCTTTACCCTTCAACGGACTCCAGACTCCTGTACTTCTGGGTTCTCTGGATaGGGTGTGTACACCAACCTC +
Preference number: 4 (lower is better)
Translates to: TGSLREAFTLQRTPDSCTSGFSG*GVYTNL
Trigger: GAGGTTGGTGTACACACCTCATCCAGAGAACCCAGA...AGTACAGGAGTCTGGAGTCCGTTGAAGGGTAAAGGCCTCCCGCAAGCTGCCAGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000336990.8
ENST00000440960.6
ENST00000587735.1
ENST00000592149.5
CDS-3UTR CCA 90 bp TTGGATACTATGAGGGATCCATGGCCTCCAGCCCCAGCAGGTGAGGCTGGCAAGGAGCACGGTCATTTCTaGGTTCTCTGGATGAGGTGT +
Preference number: 4 (lower is better)
Translates to: LDTMRDPWPPAPAGEAGKEHGHF*VLWMRC
Trigger: ACACCTCATCCAGAGAACCCAGAAATGACCGTGCTC...CTTGCCAGCCTCACCTGCTGGGGCTGGAGGCCATGGATCCCTCATAGTATCCAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000336990.8
ENST00000440960.6
ENST00000587735.1
ENST00000592149.5
CDS-3UTR CCA 90 bp TCCTCCCCGGCCCTGTGTGCCCTCGCAGCCAGACGTGCTTTTCCGTCCCGTCCTTTCTTTCCTTTCTTCTaGGAAGCATCACCATTTATG +
Preference number: 4 (lower is better)
Translates to: SSPALCALAARRAFPSRPFFPFF*EASPFM
Trigger: CATAAATGGTGATGCTTCCCAGAAGAAAGGAAAGAA...AGGACGGGACGGAAAAGCACGTCTGGCTGCGAGGGCACACAGGGCCGGGGAGGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000440960.6
ENST00000587735.1
ENST00000590956.5
ENST00000592149.5
CDS-3UTR CCA 90 bp CTAATCCTCCTCCCCGGCCCTGTGTGCCCTCGCAGCCAGACGTGCTTTTCCGTCACTTTAATGAAAGGCTaGTCCGACAAATCTGAGGAG +
Preference number: 4 (lower is better)
Translates to: LILLPGPVCPRSQTCFSVTLMKG*SDKSEE
Trigger: CTCCTCAGATTTGTCGGACCAGCCTTTCATTAAAGT...GACGGAAAAGCACGTCTGGCTGCGAGGGCACACAGGGCCGGGGAGGAGGATTAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000592149.5
CDS-3UTR GCA 90 bp AAAAACAGGAACTCAAACCTTGGATACTATGAGGGATCCATGGCCTCCAGCCCCCCTCGCAGCCAGACGTaGTTTTCCGTCCCGTCCTTG +
Preference number: 4 (lower is better)
Translates to: KNRNSNLGYYEGSMASSPPRSQT*FSVPSL
Trigger: CAAGGACGGGACGGAAAAGCACGTCTGGCTGCGAGG...GGGGCTGGAGGCCATGGATCCCTCATAGTATCCAAGGTTTGAGTTCCTGTTTTT
54% GC, longest homopolymer 6 nt, total homopolymer stretches 15 nt.
Matches the following 4 transcripts:
ENST00000336990.8
ENST00000440960.6
ENST00000587735.1
ENST00000592149.5
CDS-3UTR GCA 90 bp AAAAACAGGAACTCAAACCTTGGATACTATGAGGGATCCATGGCCTCCAGCCCCAGCCGACTGGCAGCTTaGGGGAGGCCTTTACCCTTC +
Preference number: 4 (lower is better)
Translates to: KNRNSNLGYYEGSMASSPSRLAA*GRPLPF
Trigger: GAAGGGTAAAGGCCTCCCGCAAGCTGCCAGTCGGCT...GGGGCTGGAGGCCATGGATCCCTCATAGTATCCAAGGTTTGAGTTCCTGTTTTT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENST00000336990.8
ENST00000440960.6
ENST00000587735.1
ENST00000592149.5
CDS-3UTR CCA 90 bp AGCCTAATCCTCCTCCCCGGCCCTGTGTGCCCTCGCAGCCAGACGTGCTTTTCCCATTTTCTTTTCCACTaGATCCACCACAGAATGTTC +
Preference number: 4 (lower is better)
Translates to: SLILLPGPVCPRSQTCFSHFLFH*IHHRMF
Trigger: GAACATTCTGTGGTGGATCCAGTGGAAAAGAAAATG...GGAAAAGCACGTCTGGCTGCGAGGGCACACAGGGCCGGGGAGGAGGATTAGGCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 6 transcripts:
ENST00000336990.8
ENST00000440960.6
ENST00000587735.1
ENST00000589565.1
ENST00000590956.5
ENST00000592149.5
CDS-3UTR CCA 90 bp TGCCCTCGCAGCCAGACGTGCTTTTCCGTCCCGTCCTTGCTCGTCCTCTCCTCAACCCCTTCTTTGCATTaGATGATATCGTATTGGCCA +
Preference number: 4 (lower is better)
Translates to: CPRSQTCFSVPSLLVLSSTPSLH*MISYWP
Trigger: TGGCCAATACGATATCATCCAATGCAAAGAAGGGGT...TGAGGAGAGGACGAGCAAGGACGGGACGGAAAAGCACGTCTGGCTGCGAGGGCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENST00000336990.8
ENST00000440960.6
ENST00000587735.1
ENST00000589565.1
ENST00000590956.5
ENST00000592149.5
CDS-3UTR CCA 90 bp AGCCTCGTCAGGAGAGGCTTAGCCACTCCAGGAAAGGCATTTGGGGGCCGAGAATGGGGAAAAGACCTTTaGTCGTTGTCCCTCAAACAC +
Preference number: 4 (lower is better)
Translates to: SLVRRGLATPGKAFGGREWGKDL*SLSLKH
Trigger: GTGTTTGAGGGACAACGACCAAAGGTCTTTTCCCCA...TTCTCGGCCCCCAAATGCCTTTCCTGGAGTGGCTAAGCCTCTCCTGACGAGGCT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENST00000336990.8
ENST00000440960.6
ENST00000587735.1
ENST00000592149.5
CDS-3UTR CCA 90 bp CATGAGGGGAGGGACATCTGGTCCCGGGGTCACCTGCGACCCGCGATCAGTCCATTCTTTCCTTTCTTCTaGGAAGCATCACCATTTATG +
Preference number: 4 (lower is better)
Translates to: HEGRDIWSRGHLRPAISPFFPFF*EASPFM
Trigger: CATAAATGGTGATGCTTCCCAGAAGAAAGGAAAGAA...TGGACTGATCGCGGGTCGCAGGTGACCCCGGGACCAGATGTCCCTCCCCTCATG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000440960.6
ENST00000587735.1
ENST00000590956.5
ENST00000592149.5
CDS-3UTR TCA 90 bp ACATCTGGTCCCGGGGTCACCTGCGACCCGCGATCAGTCCAGCCTAATCCTCCTCAACCTCTCATTAACTaGCACCAAATTTGTGAGTGT +
Preference number: 4 (lower is better)
Translates to: TSGPGVTCDPRSVQPNPPQPLIN*HQICEC
Trigger: ACACTCACAAATTTGGTGTCAGTTAATGAGAGGTTG...AGGAGGATTAGGCTGGACTGATCGCGGGTCGCAGGTGACCCCGGGACCAGATGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENST00000336990.8
ENST00000440960.6
ENST00000587735.1
ENST00000589565.1
ENST00000590956.5
ENST00000592149.5
CDS-3UTR TCA 90 bp CTAATCCTCCTCCCCGGCCCTGTGTGCCCTCGCAGCCAGACGTGCTTTTCCGTCTCACTATTCAAGAAATaGTATCATGGGATGCAGCAA +
Preference number: 4 (lower is better)
Translates to: LILLPGPVCPRSQTCFSVSLFKK*YHGMQQ
Trigger: TTGCTGCATCCCATGATATCATTTCTTGAATAGTGA...GACGGAAAAGCACGTCTGGCTGCGAGGGCACACAGGGCCGGGGAGGAGGATTAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000587735.1
CDS-3UTR CCA 90 bp ACATCTGGTCCCGGGGTCACCTGCGACCCGCGATCAGTCCAGCCTAATCCTCCTCATTTTCTTTTCCACTaGATCCACCACAGAATGTTC +
Preference number: 4 (lower is better)
Translates to: TSGPGVTCDPRSVQPNPPHFLFH*IHHRMF
Trigger: GAACATTCTGTGGTGGATCCAGTGGAAAAGAAAATG...AGGAGGATTAGGCTGGACTGATCGCGGGTCGCAGGTGACCCCGGGACCAGATGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 6 transcripts:
ENST00000336990.8
ENST00000440960.6
ENST00000587735.1
ENST00000589565.1
ENST00000590956.5
ENST00000592149.5
CDS-3UTR CCA 90 bp CAGCCTAATCCTCCTCCCCGGCCCTGTGTGCCCTCGCAGCCAGACGTGCTTTTCTTCTTTCCTTTCTTCTaGGAAGCATCACCATTTATG +
Preference number: 4 (lower is better)
Translates to: QPNPPPRPCVPSQPDVLFFFPFF*EASPFM
Trigger: CATAAATGGTGATGCTTCCCAGAAGAAAGGAAAGAA...GAAAAGCACGTCTGGCTGCGAGGGCACACAGGGCCGGGGAGGAGGATTAGGCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000440960.6
ENST00000587735.1
ENST00000590956.5
ENST00000592149.5
CDS-3UTR GCA 90 bp GCGAAAAACAGGAACTCAAACCTTGGATACTATGAGGGATCCATGGCCTCCAGCTGCCATCAGGGTCACTaGAGACTCAAACCTCCCAGG +
Preference number: 4 (lower is better)
Translates to: AKNRNSNLGYYEGSMASSCHQGH*RLKPPR
Trigger: CCTGGGAGGTTTGAGTCTGCAGTGACCCTGATGGCA...GCTGGAGGCCATGGATCCCTCATAGTATCCAAGGTTTGAGTTCCTGTTTTTCGC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000592149.5
CDS-3UTR CCA 90 bp CCCTCGCAGCCAGACGTGCTTTTCCGTCCCGTCCTTGCTCGTCCTCTCCTCACCTTCTTTCCTTTCTTCTaGGAAGCATCATTTATGACA +
Preference number: 4 (lower is better)
Translates to: PSQPDVLFRPVLARPLLTFFPFF*EASFMT
Trigger: TGTCATAAATGATGCTTCCCAGAAGAAAGGAAAGAA...GGTGAGGAGAGGACGAGCAAGGACGGGACGGAAAAGCACGTCTGGCTGCGAGGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000336990.8
ENST00000589565.1
CDS-3UTR CCA 90 bp CTCGTCAGGAGAGGCTTAGCCACTCCAGGAAAGGCATTTGGGGGCCGAGAAGAAACCCCTTCTTTGCATTaGATGATATCGTATTGGCCA +
Preference number: 4 (lower is better)
Translates to: LVRRGLATPGKAFGGREETPSLH*MISYWP
Trigger: TGGCCAATACGATATCATCCAATGCAAAGAAGGGGT...TTCTTCTCGGCCCCCAAATGCCTTTCCTGGAGTGGCTAAGCCTCTCCTGACGAG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000336990.8
ENST00000440960.6
ENST00000587735.1
ENST00000592149.5
CDS-3UTR CCA 90 bp TCGCAGCCAGACGTGCTTTTCCGTCCCGTCCTTGCTCGTCCTCTCCTCACCTCCATGTCAATGTCCTACTaGTTCCCAAAATCTAGAAAA +
Preference number: 4 (lower is better)
Translates to: SQPDVLFRPVLARPLLTSMSMSY*FPKSRK
Trigger: TTTTCTAGATTTTGGGAACCAGTAGGACATTGACAT...GGAGGTGAGGAGAGGACGAGCAAGGACGGGACGGAAAAGCACGTCTGGCTGCGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000587735.1
CDS-3UTR TCA 90 bp TTTAAAGATGGTGGGGAAAAGACCTTTGGTCGTTGTCCCTCAAACACTCACAAACCTCCCAGGCTCAAGTaGACATCCTGCCTCAGCCTC +
Preference number: 4 (lower is better)
Translates to: FKDGGEKTFGRCPSNTHKPPRLK*TSCLSL
Trigger: GAGGCTGAGGCAGGATGTTCACTTGAGCCTGGGAGG...TTTGTGAGTGTTTGAGGGACAACGACCAAAGGTCTTTTCCCCACCATCTTTAAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000592149.5
CDS-3UTR CCA 90 bp AACAGGAACTCAAACCTTGGATACTATGAGGGATCCATGGCCTCCAGCCCCAGCACCCCTTCTTTGCATTaGATGATATCGTATTGGCCA +
Preference number: 4 (lower is better)
Translates to: NRNSNLGYYEGSMASSPSTPSLH*MISYWP
Trigger: TGGCCAATACGATATCATCCAATGCAAAGAAGGGGT...GCTGGGGCTGGAGGCCATGGATCCCTCATAGTATCCAAGGTTTGAGTTCCTGTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000336990.8
ENST00000440960.6
ENST00000587735.1
ENST00000592149.5
CDS-3UTR CCA 90 bp TTTAAAGATGGTGGGGAAAAGACCTTTGGTCGTTGTCCCTCAAACACTCACAAAACCCGCCAGCGTTTGTaGAGGAGCCTAAGTGGAGGA +
Preference number: 4 (lower is better)
Translates to: FKDGGEKTFGRCPSNTHKTRQRL*RSLSGG
Trigger: TCCTCCACTTAGGCTCCTCCACAAACGCTGGCGGGT...TTTGTGAGTGTTTGAGGGACAACGACCAAAGGTCTTTTCCCCACCATCTTTAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENST00000336990.8
ENST00000440960.6
ENST00000587735.1
ENST00000592149.5
CDS-3UTR TCA 90 bp TTCAGAGTGTTCAATTATCCACTCGATAGCAGCCCACCCCTTCTTTGCATTGGAGACAGGAGAATCGCTTaGACCCATGAAGTGGAGGTT +
Preference number: 4 (lower is better)
Translates to: FRVFNYPLDSSPPLLCIGDRRIA*THEVEV
Trigger: AACCTCCACTTCATGGGTTCAAGCGATTCTCCTGTC...TCCAATGCAAAGAAGGGGTGGGCTGCTATCGAGTGGATAATTGAACACTCTGAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000589565.1
CDS-3UTR TCA 90 bp AAGGCGAAAAACAGGAACTCAAACCTTGGATACTATGAGGGATCCATGGCCTCCCAACCTCTCATTAACTaGCACCAAATTTGTGAGTGT +
Preference number: 4 (lower is better)
Translates to: KAKNRNSNLGYYEGSMASQPLIN*HQICEC
Trigger: ACACTCACAAATTTGGTGTCAGTTAATGAGAGGTTG...GGAGGCCATGGATCCCTCATAGTATCCAAGGTTTGAGTTCCTGTTTTTCGCCTT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENST00000336990.8
ENST00000440960.6
ENST00000587735.1
ENST00000592149.5
CDS GCA 90 bp ACGAGGCTGGGCAGCCCCCACTCGGTGCTGAGCAGGCGCAAGCTGTaGAGGCGGCCGCGGCCGTCCACGCGGCGCTGTAGCACATCCACG +
Preference number: 5 (lower is better)
Translates to: TRLGSPHSVLSRRKL*RRPRPSTRRCSTST
Trigger: CGTGGATGTGCTACAGCGCCGCGTGGACGGCCGCGGCCGCCTGCACAGCTTGCGCCTGCTCAGCACCGAGTGGGGGCTGCCCAGCCTCGT
73% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 6 transcripts:
ENST00000336990.8
ENST00000440960.6
ENST00000587862.5
ENST00000588729.5
ENST00000589952.5
ENST00000592149.5
CDS-3UTR CAA 90 bp TTGTGGAGGAGCCTAAGTGGAGGACAGCGTGGGCGGGCGGGCGGGGGCGGCGCGAGCTCCAGATCTTCATaGCCGCCGGCGCAGGGCGCG +
Preference number: 5 (lower is better)
Translates to: LWRSLSGGQRGRAGGGGASSRSS*PPAQGA
Trigger: CGCGCCCTGCGCCGGCGGCAATGAAGATCTGGAGCT...CGCGCCGCCCCCGCCCGCCCGCCCACGCTGTCCTCCACTTAGGCTCCTCCACAA
73% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000336990.8
ENST00000440960.6
CDS-3UTR CAA 90 bp CGAGGGCCTCGAGCCCTCCATCCACGCAGACGGCGGCGGTGGGGCTGGCTGGGGTGGGGCTGCTCCCTGTaGCACGCTCATGAGGGGAGG +
Preference number: 5 (lower is better)
Translates to: RGPRALHPRRRRRWGWLGWGCSL*HAHEGR
Trigger: CCTCCCCTCATGAGCGTGCAACAGGGAGCAGCCCCA...CCCCAGCCAGCCCCACCGCCGCCGTCTGCGTGGATGGAGGGCTCGAGGCCCTCG
73% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 6 transcripts:
ENST00000336990.8
ENST00000440960.6
ENST00000587735.1
ENST00000589565.1
ENST00000590956.5
ENST00000592149.5
CDS-3UTR CAA 90 bp GGCAGGACGATGGGCGCCGCCCCTAAGGGACACGGGCGAGGGCCTCGAGCCCTCTGGGGCTGCTCCCTGTaGCACGCTCATGAGGGGAGG +
Preference number: 5 (lower is better)
Translates to: GRTMGAAPKGHGRGPRALWGCSL*HAHEGR
Trigger: CCTCCCCTCATGAGCGTGCAACAGGGAGCAGCCCCA...GAGGGCTCGAGGCCCTCGCCCGTGTCCCTTAGGGGCGGCGCCCATCGTCCTGCC
72% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 6 transcripts:
ENST00000336990.8
ENST00000440960.6
ENST00000587735.1
ENST00000589565.1
ENST00000590956.5
ENST00000592149.5
CDS TCA 90 bp TTCCCAAAATCGCTCTCACGAGGCTGGGCAGCCCCCACTCGGTGCTaGGCAGGCGCAAGCTGTGCAGGCGGCCGCGGCCGTCCACGCGGC +
Preference number: 5 (lower is better)
Translates to: FPKSLSRGWAAPTRC*AGASCAGGRGRPRG
Trigger: GCCGCGTGGACGGCCGCGGCCGCCTGCACAGCTTGCGCCTGCTCAGCACCGAGTGGGGGCTGCCCAGCCTCGTGAGAGCGATTTTGGGAA
71% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 6 transcripts:
ENST00000336990.8
ENST00000440960.6
ENST00000587862.5
ENST00000588729.5
ENST00000589952.5
ENST00000592149.5
CDS-3UTR CAA 90 bp GGCTGGGCCACTGCGGCAGGCAGGACGATGGGCGCCGCCCCTAAGGGACACGGGGCCCAGGAGAGCTGCTaGGTGATCTGCAGGACCGAG +
Preference number: 5 (lower is better)
Translates to: GWATAAGRTMGAAPKGHGAQESC*VICRTE
Trigger: CTCGGTCCTGCAGATCACCAAGCAGCTCTCCTGGGC...CCCGTGTCCCTTAGGGGCGGCGCCCATCGTCCTGCCTGCCGCAGTGGCCCAGCC
71% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000336990.8
ENST00000440960.6
ENST00000587735.1
ENST00000592149.5
CDS-3UTR CAA 90 bp CGAGGGGACGGGGGCGGAGAGGCTGGAGGGCGGCACACCCGCCAGCGTTTGTGGGAGCCGACTGGCAGCTaGCGGGAGGCCTTTACCCTT +
Preference number: 5 (lower is better)
Translates to: RGDGGGEAGGRHTRQRLWEPTGS*REAFTL
Trigger: AAGGGTAAAGGCCTCCCGCAAGCTGCCAGTCGGCTC...CCACAAACGCTGGCGGGTGTGCCGCCCTCCAGCCTCTCCGCCCCCGTCCCCTCG
71% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000336990.8
ENST00000440960.6
ENST00000587735.1
ENST00000592149.5
CDS-3UTR CAA 90 bp ACGGGGGCGGAGAGGCTGGAGGGCGGCACACCCGCCAGCGTTTGTGGAGGAGCCGAGCCGACTGGCAGCTaGCGGGAGGCCTTTACCCTT +
Preference number: 5 (lower is better)
Translates to: TGAERLEGGTPASVCGGAEPTGS*REAFTL
Trigger: AAGGGTAAAGGCCTCCCGCAAGCTGCCAGTCGGCTC...GGCTCCTCCACAAACGCTGGCGGGTGTGCCGCCCTCCAGCCTCTCCGCCCCCGT
70% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENST00000336990.8
ENST00000440960.6
ENST00000587735.1
ENST00000592149.5
CDS-3UTR CAA 90 bp GTCCCGGGGTCACCTGCGACCCGCGATCAGTCCAGCCTAATCCTCCTCCCCGGCTGGGGCTGCTCCCTGTaGCACGCTCATGAGGGGAGG +
Preference number: 5 (lower is better)
Translates to: VPGSPATRDQSSLILLPGWGCSL*HAHEGR
Trigger: CCTCCCCTCATGAGCGTGCAACAGGGAGCAGCCCCA...GCCGGGGAGGAGGATTAGGCTGGACTGATCGCGGGTCGCAGGTGACCCCGGGAC
69% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 6 transcripts:
ENST00000336990.8
ENST00000440960.6
ENST00000587735.1
ENST00000589565.1
ENST00000590956.5
ENST00000592149.5
CDS-3UTR CAA 90 bp CCTCCAGCCTGGGCGCAGGATGTCCCCCGGGCACGGCAGTGGCAGACTGGAGGGCACACCCGCCAGCGTTaGTGGAGGAGCCTAAGTGGA +
Preference number: 5 (lower is better)
Translates to: PPAWAQDVPRARQWQTGGHTRQR*WRSLSG
Trigger: TCCACTTAGGCTCCTCCACAAACGCTGGCGGGTGTG...CCCTCCAGTCTGCCACTGCCGTGCCCGGGGGACATCCTGCGCCCAGGCTGGAGG
69% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENST00000336990.8
ENST00000440960.6
ENST00000587735.1
ENST00000592149.5
CDS-3UTR CAA 90 bp GGGGGCGGAGAGGCTGGAGGGCGGCACACCCGCCAGCGTTTGTGGAGGAGCCTAGAGCCGACTGGCAGCTaGCGGGAGGCCTTTACCCTT +
Preference number: 5 (lower is better)
Translates to: GGGEAGGRHTRQRLWRSLEPTGS*REAFTL
Trigger: AAGGGTAAAGGCCTCCCGCAAGCTGCCAGTCGGCTC...TAGGCTCCTCCACAAACGCTGGCGGGTGTGCCGCCCTCCAGCCTCTCCGCCCCC
69% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENST00000336990.8
ENST00000440960.6
ENST00000587735.1
ENST00000592149.5
CDS-3UTR CAA 90 bp CATGAGGGGAGGGACATCTGGTCCCGGGGTCACCTGCGACCCGCGATCAGTCCAAGCTCCAGATCTTCATaGCCGCCGGCGCAGGGCGCG +
Preference number: 5 (lower is better)
Translates to: HEGRDIWSRGHLRPAISPSSRSS*PPAQGA
Trigger: CGCGCCCTGCGCCGGCGGCAATGAAGATCTGGAGCT...TGGACTGATCGCGGGTCGCAGGTGACCCCGGGACCAGATGTCCCTCCCCTCATG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000336990.8
ENST00000440960.6
ENST00000589565.1
ENST00000590956.5
CDS-3UTR CAA 90 bp CGAGGGCCTCGAGCCCTCCATCCACGCAGACGGCGGCGGTGGGGCTGGCTGGGGGTGGGGAAAAGACCTTaGGTCGTTGTCCCTCAAACA +
Preference number: 5 (lower is better)
Translates to: RGPRALHPRRRRRWGWLGVGKRP*VVVPQT
Trigger: TGTTTGAGGGACAACGACCAAAGGTCTTTTCCCCAC...CCCCAGCCAGCCCCACCGCCGCCGTCTGCGTGGATGGAGGGCTCGAGGCCCTCG
67% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 4 transcripts:
ENST00000336990.8
ENST00000440960.6
ENST00000587735.1
ENST00000592149.5
CDS-3UTR CAA 90 bp TGTGTGCCCTCGCAGCCAGACGTGCTTTTCCGTCCCGTCCTTGCTCGTCCTCTCAGCTCCAGATCTTCATaGCCGCCGGCGCAGGGCGCG +
Preference number: 5 (lower is better)
Translates to: CVPSQPDVLFRPVLARPLSSRSS*PPAQGA
Trigger: CGCGCCCTGCGCCGGCGGCAATGAAGATCTGGAGCT...GAGAGGACGAGCAAGGACGGGACGGAAAAGCACGTCTGGCTGCGAGGGCACACA
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000336990.8
ENST00000440960.6
ENST00000589565.1
ENST00000590956.5
CDS-3UTR CAA 90 bp TGCTCCCTGTTGCACGCTCATGAGGGGAGGGACATCTGGTCCCGGGGTCACCTGTGGGGCTGCTCCCTGTaGCACGCTCATGAGGGGAGG +
Preference number: 5 (lower is better)
Translates to: CSLLHAHEGRDIWSRGHLWGCSL*HAHEGR
Trigger: CCTCCCCTCATGAGCGTGCAACAGGGAGCAGCCCCA...CAGGTGACCCCGGGACCAGATGTCCCTCCCCTCATGAGCGTGCAACAGGGAGCA
66% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 6 transcripts:
ENST00000336990.8
ENST00000440960.6
ENST00000587735.1
ENST00000589565.1
ENST00000590956.5
ENST00000592149.5
CDS-3UTR CAA 90 bp GCCCTCGCAGCCAGACGTGCTTTTCCGTCCCGTCCTTGCTCGTCCTCTCCTCACTGGGGCTGCTCCCTGTaGCACGCTCATGAGGGGAGG +
Preference number: 5 (lower is better)
Translates to: ALAARRAFPSRPCSSSPHWGCSL*HAHEGR
Trigger: CCTCCCCTCATGAGCGTGCAACAGGGAGCAGCCCCA...GTGAGGAGAGGACGAGCAAGGACGGGACGGAAAAGCACGTCTGGCTGCGAGGGC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 6 transcripts:
ENST00000336990.8
ENST00000440960.6
ENST00000587735.1
ENST00000589565.1
ENST00000590956.5
ENST00000592149.5
CDS-3UTR CAA 90 bp GGCGGAGAGGCTGGAGGGCGGCACACCCGCCAGCGTTTGTGGAGGAGCCTAAGTCACACCCGCCAGCGTTaGTGGAGGAGCCTAAGTGGA +
Preference number: 5 (lower is better)
Translates to: GGEAGGRHTRQRLWRSLSHTRQR*WRSLSG
Trigger: TCCACTTAGGCTCCTCCACAAACGCTGGCGGGTGTG...ACTTAGGCTCCTCCACAAACGCTGGCGGGTGTGCCGCCCTCCAGCCTCTCCGCC
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000336990.8
ENST00000440960.6
ENST00000587735.1
ENST00000592149.5
CDS-3UTR CAA 90 bp GCTGGGCCACTGCGGCAGGCAGGACGATGGGCGCCGCCCCTAAGGGACACGGGCAACTTCTGGAAGGCTTaGCGAAAAAGAGCCGACTGG +
Preference number: 5 (lower is better)
Translates to: AGPLRQAGRWAPPLRDTGNFWKA*RKRADW
Trigger: CCAGTCGGCTCTTTTTCGCAAAGCCTTCCAGAAGTT...GCCCGTGTCCCTTAGGGGCGGCGCCCATCGTCCTGCCTGCCGCAGTGGCCCAGC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000336990.8
ENST00000440960.6
ENST00000587735.1
ENST00000592149.5
CDS-3UTR CAA 90 bp GGCAGGACGATGGGCGCCGCCCCTAAGGGACACGGGCGAGGGCCTCGAGCCCTCAACTTCTGGAAGGCTTaGCGAAAAAGAGCCGACTGG +
Preference number: 5 (lower is better)
Translates to: GRTMGAAPKGHGRGPRALNFWKA*RKRADW
Trigger: CCAGTCGGCTCTTTTTCGCAAAGCCTTCCAGAAGTT...GAGGGCTCGAGGCCCTCGCCCGTGTCCCTTAGGGGCGGCGCCCATCGTCCTGCC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000336990.8
ENST00000440960.6
ENST00000587735.1
ENST00000592149.5
CDS-3UTR CAA 90 bp GGGGCTGGGCCACTGCGGCAGGCAGGACGATGGGCGCCGCCCCTAAGGGACACGAGTGATGATGGCTTCTaGTGTGAGCACGGTCATTTC +
Preference number: 5 (lower is better)
Translates to: GAGPLRQAGRWAPPLRDTSDDGF*CEHGHF
Trigger: GAAATGACCGTGCTCACACAAGAAGCCATCATCACT...CGTGTCCCTTAGGGGCGGCGCCCATCGTCCTGCCTGCCGCAGTGGCCCAGCCCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENST00000336990.8
ENST00000440960.6
ENST00000587735.1
ENST00000590956.5
ENST00000592149.5
CDS-3UTR CAA 90 bp GCAGGCAGGACGATGGGCGCCGCCCCTAAGGGACACGGGCGAGGGCCTCGAGCCCAGCCCACCCCTTCTTaGCATTGGATGATATCGTAT +
Preference number: 5 (lower is better)
Translates to: AGRTMGAAPKGHGRGPRAQPTPS*HWMISY
Trigger: ATACGATATCATCCAATGCAAAGAAGGGGTGGGCTG...GGCTCGAGGCCCTCGCCCGTGTCCCTTAGGGGCGGCGCCCATCGTCCTGCCTGC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENST00000336990.8
ENST00000440960.6
ENST00000587735.1
ENST00000590956.5
ENST00000592149.5
CDS-3UTR CAA 90 bp GGAGAGGCTGGAGGGCGGCACACCCGCCAGCGTTTGTGGAGGAGCCTAAGTGGACACACCCGCCAGCGTTaGTGGAGGAGCCTAAGTGGA +
Preference number: 5 (lower is better)
Translates to: GEAGGRHTRQRLWRSLSGHTRQR*WRSLSG
Trigger: TCCACTTAGGCTCCTCCACAAACGCTGGCGGGTGTG...TCCACTTAGGCTCCTCCACAAACGCTGGCGGGTGTGCCGCCCTCCAGCCTCTCC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000336990.8
ENST00000440960.6
ENST00000587735.1
ENST00000592149.5
CDS-3UTR CAA 90 bp GGGACATCTGGTCCCGGGGTCACCTGCGACCCGCGATCAGTCCAGCCTAATCCTGCCCAGGAGAGCTGCTaGGTGATCTGCAGGACCGAG +
Preference number: 5 (lower is better)
Translates to: GTSGPGVTCDPRSVQPNPAQESC*VICRTE
Trigger: CTCGGTCCTGCAGATCACCAAGCAGCTCTCCTGGGC...AGGATTAGGCTGGACTGATCGCGGGTCGCAGGTGACCCCGGGACCAGATGTCCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000336990.8
ENST00000440960.6
ENST00000587735.1
ENST00000592149.5
CDS CCA 90 bp GCCAGGCCTGGGCAACGCGCTAGTCTCTTCACTTTAATGAAAGGCTaGTCCGACAAATCTGAGGAGTCCCGCGAGCCCTCCCCGGCCGCC +
Preference number: 5 (lower is better)
Translates to: ARPGQRASLFTLMKG*SDKSEESREPSPAA
Trigger: GGCGGCCGGGGAGGGCTCGCGGGACTCCTCAGATTTGTCGGACCAGCCTTTCATTAAAGTGAAGAGACTAGCGCGTTGCCCAGGCCTGGC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000592149.5
CDS-3UTR CAA 90 bp TTGGATACTATGAGGGATCCATGGCCTCCAGCCCCAGCAGGTGAGGCTGGCAAGAGCTCCAGATCTTCATaGCCGCCGGCGCAGGGCGCG +
Preference number: 5 (lower is better)
Translates to: LDTMRDPWPPAPAGEAGKSSRSS*PPAQGA
Trigger: CGCGCCCTGCGCCGGCGGCAATGAAGATCTGGAGCT...CTTGCCAGCCTCACCTGCTGGGGCTGGAGGCCATGGATCCCTCATAGTATCCAA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000336990.8
ENST00000440960.6
CDS-3UTR CAA 90 bp CCTCCAGCCTGGGCGCAGGATGTCCCCCGGGCACGGCAGTGGCAGACTGGAGGGCACCCCTTCTTTGCATaGGATGATATCGTATTGGCC +
Preference number: 5 (lower is better)
Translates to: PPAWAQDVPRARQWQTGGHPFFA*DDIVLA
Trigger: GGCCAATACGATATCATCCAATGCAAAGAAGGGGTG...CCCTCCAGTCTGCCACTGCCGTGCCCGGGGGACATCCTGCGCCCAGGCTGGAGG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000336990.8
ENST00000440960.6
ENST00000587735.1
ENST00000592149.5
CDS-3UTR CAA 90 bp GCGCCGCCCCTAAGGGACACGGGCGAGGGCCTCGAGCCCTCCATCCACGCAGACCAGCCCACCCCTTCTTaGCATTGGATGATATCGTAT +
Preference number: 5 (lower is better)
Translates to: APPLRDTGEGLEPSIHADQPTPS*HWMISY
Trigger: ATACGATATCATCCAATGCAAAGAAGGGGTGGGCTG...GTCTGCGTGGATGGAGGGCTCGAGGCCCTCGCCCGTGTCCCTTAGGGGCGGCGC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENST00000336990.8
ENST00000440960.6
ENST00000587735.1
ENST00000589565.1
ENST00000590956.5
ENST00000592149.5
CDS-3UTR CAA 90 bp CGGCAGGCAGGACGATGGGCGCCGCCCCTAAGGGACACGGGCGAGGGCCTCGAGAAAGACCTTTGGTCGTaGTCCCTCAAACACTCACAA +
Preference number: 5 (lower is better)
Translates to: RQAGRWAPPLRDTGEGLEKDLWS*SLKHSQ
Trigger: TTGTGAGTGTTTGAGGGACAACGACCAAAGGTCTTT...CTCGAGGCCCTCGCCCGTGTCCCTTAGGGGCGGCGCCCATCGTCCTGCCTGCCG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000336990.8
ENST00000440960.6
ENST00000587735.1
ENST00000592149.5
CDS-3UTR CAA 90 bp GGCTGCTCCCTGTTGCACGCTCATGAGGGGAGGGACATCTGGTCCCGGGGTCACCCCATGAAGTGGAGGTaGCAGGGTGCTGAGATCCAC +
Preference number: 5 (lower is better)
Translates to: GCSLLHAHEGRDIWSRGHPMKWR*QGAEIH
Trigger: GTGGATCTCAGCACCCTGCAACCTCCACTTCATGGG...GTGACCCCGGGACCAGATGTCCCTCCCCTCATGAGCGTGCAACAGGGAGCAGCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000589565.1
CDS-3UTR CAA 90 bp GCAGCCAGACGTGCTTTTCCGTCCCGTCCTTGCTCGTCCTCTCCTCACCTCCTTGCCCAGGAGAGCTGCTaGGTGATCTGCAGGACCGAG +
Preference number: 5 (lower is better)
Translates to: AARRAFPSRPCSSSPHLLAQESC*VICRTE
Trigger: CTCGGTCCTGCAGATCACCAAGCAGCTCTCCTGGGC...AAGGAGGTGAGGAGAGGACGAGCAAGGACGGGACGGAAAAGCACGTCTGGCTGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000336990.8
ENST00000440960.6
ENST00000587735.1
ENST00000592149.5
CDS-3UTR CAA 90 bp GCGCCGCCCCTAAGGGACACGGGCGAGGGCCTCGAGCCCTCCATCCACGCAGACAAAGACCTTTGGTCGTaGTCCCTCAAACACTCACAA +
Preference number: 5 (lower is better)
Translates to: APPLRDTGEGLEPSIHADKDLWS*SLKHSQ
Trigger: TTGTGAGTGTTTGAGGGACAACGACCAAAGGTCTTT...GTCTGCGTGGATGGAGGGCTCGAGGCCCTCGCCCGTGTCCCTTAGGGGCGGCGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000336990.8
ENST00000440960.6
ENST00000587735.1
ENST00000592149.5
CDS-3UTR CAA 90 bp GTCCCGGGGTCACCTGCGACCCGCGATCAGTCCAGCCTAATCCTCCTCCCCGGCCACCCCTTCTTTGCATaGGATGATATCGTATTGGCC +
Preference number: 5 (lower is better)
Translates to: VPGSPATRDQSSLILLPGHPFFA*DDIVLA
Trigger: GGCCAATACGATATCATCCAATGCAAAGAAGGGGTG...GCCGGGGAGGAGGATTAGGCTGGACTGATCGCGGGTCGCAGGTGACCCCGGGAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 6 transcripts:
ENST00000336990.8
ENST00000440960.6
ENST00000587735.1
ENST00000589565.1
ENST00000590956.5
ENST00000592149.5
CDS-3UTR CAA 90 bp GCAGCCAGACGTGCTTTTCCGTCCCGTCCTTGCTCGTCCTCTCCTCACCTCCTTCACACCCGCCAGCGTTaGTGGAGGAGCCTAAGTGGA +
Preference number: 5 (lower is better)
Translates to: AARRAFPSRPCSSSPHLLHTRQR*WRSLSG
Trigger: TCCACTTAGGCTCCTCCACAAACGCTGGCGGGTGTG...AAGGAGGTGAGGAGAGGACGAGCAAGGACGGGACGGAAAAGCACGTCTGGCTGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000336990.8
ENST00000440960.6
ENST00000587735.1
ENST00000592149.5
CDS-3UTR CAA 90 bp TCCTCCCCGGCCCTGTGTGCCCTCGCAGCCAGACGTGCTTTTCCGTCCCGTCCTGTGGGGAAAAGACCTTaGGTCGTTGTCCCTCAAACA +
Preference number: 5 (lower is better)
Translates to: SSPALCALAARRAFPSRPVGKRP*VVVPQT
Trigger: TGTTTGAGGGACAACGACCAAAGGTCTTTTCCCCAC...AGGACGGGACGGAAAAGCACGTCTGGCTGCGAGGGCACACAGGGCCGGGGAGGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 4 transcripts:
ENST00000336990.8
ENST00000440960.6
ENST00000587735.1
ENST00000592149.5
CDS-3UTR CAA 90 bp TGCACGCTCATGAGGGGAGGGACATCTGGTCCCGGGGTCACCTGCGACCCGCGAAACTTCTGGAAGGCTTaGCGAAAAAGAGCCGACTGG +
Preference number: 5 (lower is better)
Translates to: CTLMRGGTSGPGVTCDPRNFWKA*RKRADW
Trigger: CCAGTCGGCTCTTTTTCGCAAAGCCTTCCAGAAGTT...TCGCGGGTCGCAGGTGACCCCGGGACCAGATGTCCCTCCCCTCATGAGCGTGCA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENST00000336990.8
ENST00000440960.6
ENST00000587735.1
ENST00000592149.5
CDS-3UTR CAA 90 bp GCTCCCTGTTGCACGCTCATGAGGGGAGGGACATCTGGTCCCGGGGTCACCTGCGTGGGGAAAAGACCTTaGGTCGTTGTCCCTCAAACA +
Preference number: 5 (lower is better)
Translates to: APCCTLMRGGTSGPGVTCVGKRP*VVVPQT
Trigger: TGTTTGAGGGACAACGACCAAAGGTCTTTTCCCCAC...GCAGGTGACCCCGGGACCAGATGTCCCTCCCCTCATGAGCGTGCAACAGGGAGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 4 transcripts:
ENST00000336990.8
ENST00000440960.6
ENST00000587735.1
ENST00000592149.5
CDS-3UTR CAA 90 bp GCTGGGGCTGCTCCCTGTTGCACGCTCATGAGGGGAGGGACATCTGGTCCCGGGACAGGAACTCAAACCTaGGATACTATGAGGGATCCA +
Preference number: 5 (lower is better)
Translates to: AGAAPCCTLMRGGTSGPGTGTQT*DTMRDP
Trigger: TGGATCCCTCATAGTATCCAAGGTTTGAGTTCCTGT...CCCGGGACCAGATGTCCCTCCCCTCATGAGCGTGCAACAGGGAGCAGCCCCAGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000336990.8
ENST00000440960.6
ENST00000587735.1
ENST00000592149.5
CDS-3UTR CAA 90 bp GCGCCGCCCCTAAGGGACACGGGCGAGGGCCTCGAGCCCTCCATCCACGCAGACCACCACCGAATACCATaGCATTTACTAATTAGTTCA +
Preference number: 5 (lower is better)
Translates to: APPLRDTGEGLEPSIHADHHRIP*HLLISS
Trigger: TGAACTAATTAGTAAATGCAATGGTATTCGGTGGTG...GTCTGCGTGGATGGAGGGCTCGAGGCCCTCGCCCGTGTCCCTTAGGGGCGGCGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000587735.1
CDS-3UTR CAA 90 bp TCCTCCCCGGCCCTGTGTGCCCTCGCAGCCAGACGTGCTTTTCCGTCCCGTCCTCACTGCACTCCAGCATaGGTAGAACAAAGTTCCATT +
Preference number: 5 (lower is better)
Translates to: SSPALCALAARRAFPSRPHCTPA*VEQSSI
Trigger: AATGGAACTTTGTTCTACCAATGCTGGAGTGCAGTG...AGGACGGGACGGAAAAGCACGTCTGGCTGCGAGGGCACACAGGGCCGGGGAGGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000589565.1
CDS-3UTR CAA 90 bp GCTGCTCCCTGTTGCACGCTCATGAGGGGAGGGACATCTGGTCCCGGGGTCACCACAGGAACTCAAACCTaGGATACTATGAGGGATCCA +
Preference number: 5 (lower is better)
Translates to: AAPCCTLMRGGTSGPGVTTGTQT*DTMRDP
Trigger: TGGATCCCTCATAGTATCCAAGGTTTGAGTTCCTGT...GGTGACCCCGGGACCAGATGTCCCTCCCCTCATGAGCGTGCAACAGGGAGCAGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000336990.8
ENST00000440960.6
ENST00000587735.1
ENST00000592149.5
CDS-3UTR CAA 90 bp TGCCCTCGCAGCCAGACGTGCTTTTCCGTCCCGTCCTTGCTCGTCCTCTCCTCACACCCCTTCTTTGCATaGGATGATATCGTATTGGCC +
Preference number: 5 (lower is better)
Translates to: CPRSQTCFSVPSLLVLSSHPFFA*DDIVLA
Trigger: GGCCAATACGATATCATCCAATGCAAAGAAGGGGTG...TGAGGAGAGGACGAGCAAGGACGGGACGGAAAAGCACGTCTGGCTGCGAGGGCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENST00000336990.8
ENST00000440960.6
ENST00000587735.1
ENST00000589565.1
ENST00000590956.5
ENST00000592149.5
CDS-3UTR CAA 90 bp TGCCCTCGCAGCCAGACGTGCTTTTCCGTCCCGTCCTTGCTCGTCCTCTCCTCACAGCCCACCCCTTCTTaGCATTGGATGATATCGTAT +
Preference number: 5 (lower is better)
Translates to: CPRSQTCFSVPSLLVLSSQPTPS*HWMISY
Trigger: ATACGATATCATCCAATGCAAAGAAGGGGTGGGCTG...TGAGGAGAGGACGAGCAAGGACGGGACGGAAAAGCACGTCTGGCTGCGAGGGCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENST00000336990.8
ENST00000440960.6
ENST00000587735.1
ENST00000589565.1
ENST00000590956.5
ENST00000592149.5
CDS-3UTR CAA 90 bp GGACATCTGGTCCCGGGGTCACCTGCGACCCGCGATCAGTCCAGCCTAATCCTCAAAGACCTTTGGTCGTaGTCCCTCAAACACTCACAA +
Preference number: 5 (lower is better)
Translates to: GHLVPGSPATRDQSSLILKDLWS*SLKHSQ
Trigger: TTGTGAGTGTTTGAGGGACAACGACCAAAGGTCTTT...GAGGATTAGGCTGGACTGATCGCGGGTCGCAGGTGACCCCGGGACCAGATGTCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000336990.8
ENST00000440960.6
ENST00000587735.1
ENST00000592149.5
CDS-3UTR CAA 90 bp GATACTATGAGGGATCCATGGCCTCCAGCCCCAGCAGGTGAGGCTGGCAAGCAGAACTTCTGGAAGGCTTaGCGAAAAAGAGCCGACTGG +
Preference number: 5 (lower is better)
Translates to: DTMRDPWPPAPAGEAGKQNFWKA*RKRADW
Trigger: CCAGTCGGCTCTTTTTCGCAAAGCCTTCCAGAAGTT...CTGCTTGCCAGCCTCACCTGCTGGGGCTGGAGGCCATGGATCCCTCATAGTATC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000336990.8
ENST00000440960.6
ENST00000587735.1
ENST00000592149.5
CDS TCA 90 bp TCCCAGCTACTTGGGAGGGTGAGACAGGAGAATCGCTTGAACCCATaGAGTGGAGGTTGCAGGGTGCTGAGATCCACTGCACTCCAGCAT +
Preference number: 5 (lower is better)
Translates to: SQLLGRVRQENRLNP*SGGCRVLRSTALQH
Trigger: ATGCTGGAGTGCAGTGGATCTCAGCACCCTGCAACCTCCACTTCATGGGTTCAAGCGATTCTCCTGTCTCACCCTCCCAAGTAGCTGGGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000589565.1
CDS-3UTR CAA 90 bp AGGAGCCTCGTCAGGAGAGGCTTAGCCACTCCAGGAAAGGCATTTGGGGGCCGACAGCCCACCCCTTCTTaGCATTGGATGATATCGTAT +
Preference number: 5 (lower is better)
Translates to: RSLVRRGLATPGKAFGGRQPTPS*HWMISY
Trigger: ATACGATATCATCCAATGCAAAGAAGGGGTGGGCTG...TCGGCCCCCAAATGCCTTTCCTGGAGTGGCTAAGCCTCTCCTGACGAGGCTCCT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000336990.8
ENST00000440960.6
ENST00000587735.1
ENST00000592149.5
CDS-3UTR CAA 90 bp TTGGATACTATGAGGGATCCATGGCCTCCAGCCCCAGCAGGTGAGGCTGGCAAGCACCCCTTCTTTGCATaGGATGATATCGTATTGGCC +
Preference number: 5 (lower is better)
Translates to: LDTMRDPWPPAPAGEAGKHPFFA*DDIVLA
Trigger: GGCCAATACGATATCATCCAATGCAAAGAAGGGGTG...CTTGCCAGCCTCACCTGCTGGGGCTGGAGGCCATGGATCCCTCATAGTATCCAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENST00000336990.8
ENST00000440960.6
ENST00000587735.1
ENST00000592149.5
CDS-3UTR CAA 90 bp TTTCCTTTCTTCTGGGAAGCATCACCATTTATGACAAGCACAGGCACAGGCCTCGAGCCGACTGGCAGCTaGCGGGAGGCCTTTACCCTT +
Preference number: 5 (lower is better)
Translates to: FPFFWEASPFMTSTGTGLEPTGS*REAFTL
Trigger: AAGGGTAAAGGCCTCCCGCAAGCTGCCAGTCGGCTC...GAGGCCTGTGCCTGTGCTTGTCATAAATGGTGATGCTTCCCAGAAGAAAGGAAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000440960.6
ENST00000587735.1
ENST00000592149.5
CDS-3UTR CAA 90 bp CCAGACGTGCTTTTCCGTCCCGTCCTTGCTCGTCCTCTCCTCACCTCCTTCTTTCACCCCTTCTTTGCATaGGATGATATCGTATTGGCC +
Preference number: 5 (lower is better)
Translates to: PDVLFRPVLARPLLTSFFHPFFA*DDIVLA
Trigger: GGCCAATACGATATCATCCAATGCAAAGAAGGGGTG...AAAGAAGGAGGTGAGGAGAGGACGAGCAAGGACGGGACGGAAAAGCACGTCTGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENST00000336990.8
ENST00000440960.6
ENST00000587735.1
ENST00000589565.1
ENST00000590956.5
ENST00000592149.5
CDS-3UTR CAA 90 bp GCCAGACGTGCTTTTCCGTCCCGTCCTTGCTCGTCCTCTCCTCACCTCCTTCTTACAGGAACTCAAACCTaGGATACTATGAGGGATCCA +
Preference number: 5 (lower is better)
Translates to: ARRAFPSRPCSSSPHLLLTGTQT*DTMRDP
Trigger: TGGATCCCTCATAGTATCCAAGGTTTGAGTTCCTGT...AAGAAGGAGGTGAGGAGAGGACGAGCAAGGACGGGACGGAAAAGCACGTCTGGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000336990.8
ENST00000440960.6
ENST00000587735.1
ENST00000592149.5
CDS-3UTR CAA 90 bp CTCGTCAGGAGAGGCTTAGCCACTCCAGGAAAGGCATTTGGGGGCCGAGAAGAAACAGGAACTCAAACCTaGGATACTATGAGGGATCCA +
Preference number: 5 (lower is better)
Translates to: LVRRGLATPGKAFGGREETGTQT*DTMRDP
Trigger: TGGATCCCTCATAGTATCCAAGGTTTGAGTTCCTGT...TTCTTCTCGGCCCCCAAATGCCTTTCCTGGAGTGGCTAAGCCTCTCCTGACGAG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENST00000336990.8
ENST00000440960.6
ENST00000587735.1
ENST00000592149.5
CDS-3UTR CAA 90 bp GCGAAAAACAGGAACTCAAACCTTGGATACTATGAGGGATCCATGGCCTCCAGCCAGCCCACCCCTTCTTaGCATTGGATGATATCGTAT +
Preference number: 5 (lower is better)
Translates to: AKNRNSNLGYYEGSMASSQPTPS*HWMISY
Trigger: ATACGATATCATCCAATGCAAAGAAGGGGTGGGCTG...GCTGGAGGCCATGGATCCCTCATAGTATCCAAGGTTTGAGTTCCTGTTTTTCGC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000336990.8
ENST00000440960.6
ENST00000587735.1
ENST00000592149.5
CDS-3UTR CAA 90 bp TTTCCTTTCTTCTGGGAAGCATCACCATTTATGACAAGCACAGGCACAGGCCTCGTGGGGAAAAGACCTTaGGTCGTTGTCCCTCAAACA +
Preference number: 5 (lower is better)
Translates to: FPFFWEASPFMTSTGTGLVGKRP*VVVPQT
Trigger: TGTTTGAGGGACAACGACCAAAGGTCTTTTCCCCAC...GAGGCCTGTGCCTGTGCTTGTCATAAATGGTGATGCTTCCCAGAAGAAAGGAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000440960.6
ENST00000587735.1
ENST00000592149.5
CDS-3UTR CAA 90 bp AAAAACAGGAACTCAAACCTTGGATACTATGAGGGATCCATGGCCTCCAGCCCCAAAGACCTTTGGTCGTaGTCCCTCAAACACTCACAA +
Preference number: 5 (lower is better)
Translates to: KNRNSNLGYYEGSMASSPKDLWS*SLKHSQ
Trigger: TTGTGAGTGTTTGAGGGACAACGACCAAAGGTCTTT...GGGGCTGGAGGCCATGGATCCCTCATAGTATCCAAGGTTTGAGTTCCTGTTTTT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000336990.8
ENST00000440960.6
ENST00000587735.1
ENST00000592149.5
CDS TCA 72 bp TCGCTCTCACGAGGCTGGGCAGCCCCCACTCGGTGCTaGGCAGGCGCAAGCTGTGCAGGCGGCCGCGGCCGT +
Preference number: 6 (lower is better)
Translates to: SLSRGWAAPTRC*AGASCAGGRGR
Trigger: ACGGCCGCGGCCGCCTGCACAGCTTGCGCCTGCTCAGCACCGAGTGGGGGCTGCCCAGCCTCGTGAGAGCGA
74% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 6 transcripts:
ENST00000336990.8
ENST00000440960.6
ENST00000587862.5
ENST00000588729.5
ENST00000589952.5
ENST00000592149.5
CDS CCA 72 bp GACCGTGTCCCACGGGTGGCTGCACGCCTCGGCACCTaGCAGCCCCTTGGTTTTTGTTTGTCTGAGACAGGG +
Preference number: 6 (lower is better)
Translates to: DRVPRVAARLGT*QPLGFCLSETG
Trigger: CCCTGTCTCAGACAAACAAAAACCAAGGGGCTGCCAGGTGCCGAGGCGTGCAGCCACCCGTGGGACACGGTC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000587862.5
CDS CCA 72 bp GGGCAACGCGCTAGTCTCTTCACTTTAATGAAAGGCTaGTCCGACAAATCTGAGGAGTCCCGCGAGCCCTCC +
Preference number: 6 (lower is better)
Translates to: GQRASLFTLMKG*SDKSEESREPS
Trigger: GGAGGGCTCGCGGGACTCCTCAGATTTGTCGGACCAGCCTTTCATTAAAGTGAAGAGACTAGCGCGTTGCCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000592149.5
CDS CCA 72 bp GAGGGTGAGACAGGAGAATCGCTTGAACCCATGAAGTaGAGGTTGCAGGGTGCTGAGATCCACTGCACTCCA +
Preference number: 6 (lower is better)
Translates to: EGETGESLEPMK*RLQGAEIHCTP
Trigger: TGGAGTGCAGTGGATCTCAGCACCCTGCAACCTCCACTTCATGGGTTCAAGCGATTCTCCTGTCTCACCCTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000589565.1
CDS CAA 72 bp GAGACAGGAGAATCGCTTGAACCCATGAAGTGGAGGTaGCAGGGTGCTGAGATCCACTGCACTCCAGCATTG +
Preference number: 6 (lower is better)
Translates to: ETGESLEPMKWR*QGAEIHCTPAL
Trigger: CAATGCTGGAGTGCAGTGGATCTCAGCACCCTGCAACCTCCACTTCATGGGTTCAAGCGATTCTCCTGTCTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000589565.1
CDS CAA 90 bp TGGGAGGGTGAGACAGGAGAATCGCTTGAACCCATGAAGTGGAGGTaGCAGGGTGCTGAGATCCACTGCACTCCAGCATTGGTAGAACAA +
Preference number: 6 (lower is better)
Translates to: WEGETGESLEPMKWR*QGAEIHCTPALVEQ
Trigger: TTGTTCTACCAATGCTGGAGTGCAGTGGATCTCAGCACCCTGCAACCTCCACTTCATGGGTTCAAGCGATTCTCCTGTCTCACCCTCCCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000589565.1