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Pregenerated sensors for PRDM9 (Homo sapiens)

Ensembl gene IDs: ENSG00000164256

Ensembl transcript IDs: ENST00000502755.5, ENST00000635252.1

Found 9 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS CCA 90 bp GTCGAGGCTGCAGTGAGCCGTGATGGTGCCAATGTGATCCAGCTCTaGCAACAGAGCAGCAGACACTGTCTCTTACTTCACGATCTAGTA +
Preference number: 5 (lower is better)
Translates to: VEAAVSRDGANVIQL*QQSSRHCLLLHDLV
Trigger: TACTAGATCGTGAAGTAAGAGACAGTGTCTGCTGCTCTGTTGCCAGAGCTGGATCACATTGGCACCATCACGGCTCACTGCAGCCTCGAC
53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000635252.1
CDS GCA 90 bp TCCGCAGGCCTGGGTCTTCCAAGGGGACACTGTGTCTTTTTGAATTaGCAGAGTTCTTGCACTGATTCTCATCTGGGAGGGTTGGTGTTC +
Preference number: 5 (lower is better)
Translates to: SAGLGLPRGHCVFLN*QSSCTDSHLGGLVF
Trigger: GAACACCAACCCTCCCAGATGAGAATCAGTGCAAGAACTCTGGCAATTCAAAAAGACACAGTGTCCCCTTGGAAGACCCAGGCCTGCGGA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000502755.5
CDS CAA 90 bp CGTCCCTCCGCAGGCCTGGGTCTTCCAAGGGGACACTGTGTCTTTTaGAATTGCCAGAGTTCTTGCACTGATTCTCATCTGGGAGGGTTG +
Preference number: 6 (lower is better)
Translates to: RPSAGLGLPRGHCVF*NCQSSCTDSHLGGL
Trigger: CAACCCTCCCAGATGAGAATCAGTGCAAGAACTCTGGCAATTCAAAAAGACACAGTGTCCCCTTGGAAGACCCAGGCCTGCGGAGGGACG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000502755.5
CDS CCA 72 bp GCAGTGAGCCGTGATGGTGCCAATGTGATCCAGCTCTaGCAACAGAGCAGCAGACACTGTCTCTTACTTCAC +
Preference number: 6 (lower is better)
Translates to: AVSRDGANVIQL*QQSSRHCLLLH
Trigger: GTGAAGTAAGAGACAGTGTCTGCTGCTCTGTTGCCAGAGCTGGATCACATTGGCACCATCACGGCTCACTGC
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000635252.1
CDS TCA 72 bp CAGGCCTGGGTCTTCCAAGGGGACACTGTGTCTTTTTaGATTGCCAGAGTTCTTGCACTGATTCTCATCTGG +
Preference number: 6 (lower is better)
Translates to: QAWVFQGDTVSF*IARVLALILIW
Trigger: CCAGATGAGAATCAGTGCAAGAACTCTGGCAATTCAAAAAGACACAGTGTCCCCTTGGAAGACCCAGGCCTG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000502755.5
CDS CAA 72 bp GCAGGCCTGGGTCTTCCAAGGGGACACTGTGTCTTTTaGAATTGCCAGAGTTCTTGCACTGATTCTCATCTG +
Preference number: 6 (lower is better)
Translates to: AGLGLPRGHCVF*NCQSSCTDSHL
Trigger: CAGATGAGAATCAGTGCAAGAACTCTGGCAATTCAAAAAGACACAGTGTCCCCTTGGAAGACCCAGGCCTGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000502755.5
CDS GCA 72 bp AGGGGACACTGTGTCTTTTTGAATTGCCAGAGTTCTTaGACTGATTCTCATCTGGGAGGGTTGGTGTTCCTT +
Preference number: 6 (lower is better)
Translates to: RGHCVFLNCQSS*TDSHLGGLVFL
Trigger: AAGGAACACCAACCCTCCCAGATGAGAATCAGTGCAAGAACTCTGGCAATTCAAAAAGACACAGTGTCCCCT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000502755.5
CDS TCA 72 bp ACACTGTGTCTTTTTGAATTGCCAGAGTTCTTGCACTaGTTCTCATCTGGGAGGGTTGGTGTTCCTTTAACT +
Preference number: 6 (lower is better)
Translates to: TLCLFELPEFLH*FSSGRVGVPLT
Trigger: AGTTAAAGGAACACCAACCCTCCCAGATGAGAATCAGTGCAAGAACTCTGGCAATTCAAAAAGACACAGTGT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000502755.5
CDS GCA 72 bp TCACGATCTAGTAACAAGATGTTTGCTTCCTGCCTCTaGAGGCCTAAGGGTGGTATAAAAAGCTTCACATTT +
Preference number: 6 (lower is better)
Translates to: SRSSNKMFASCL*RPKGGIKSFTF
Trigger: AAATGTGAAGCTTTTTATACCACCCTTAGGCCTGCAGAGGCAGGAAGCAAACATCTTGTTACTAGATCGTGA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000635252.1