RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for PPP6C (Homo sapiens)

Ensembl gene IDs: ENSG00000119414

Ensembl transcript IDs: ENST00000373547.9, ENST00000415905.5, ENST00000451402.5, ENST00000456642.1

Found 197 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp TTCCACCTGAATTACACTGGGATCAGGGCAGTAACACGAAGCTACTaGCCCAACATTAGTTCAAGTGTGTGCAGCAAATGTCTTAGCCAC +
Preference number: 1 (lower is better)
Translates to: FHLNYTGIRAVTRSY*PNISSSVCSKCLSH
Trigger: GTGGCTAAGACATTTGCTGCACACACTTGAACTAATGTTGGGTCAGTAGCTTCGTGTTACTGCCCTGATCCCAGTGTAATTCAGGTGGAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000373547.9
ENST00000415905.5
ENST00000451402.5
3UTR TCA 90 bp CTGGAATACTTGTCCTTATTAAGTGGACAGTTGCATATTCAGAACTaGTCATCACAACCCTTTGGATATTCAAATTACTTACACAAAGCT +
Preference number: 1 (lower is better)
Translates to: LEYLSLLSGQLHIQN*SSQPFGYSNYLHKA
Trigger: AGCTTTGTGTAAGTAATTTGAATATCCAAAGGGTTGTGATGATCAGTTCTGAATATGCAACTGTCCACTTAATAAGGACAAGTATTCCAG
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000373547.9
ENST00000415905.5
ENST00000451402.5
3UTR-3UTR CCA 90 bp CAGAGATGGCAGATAAGGAATGGAGAGAATATTATTGGCACGTGCCCAACTAGTCAAATGAGTCCAGGGTaGGGATGGGATGGGGGAAAA +
Preference number: 2 (lower is better)
Translates to: QRWQIRNGENIIGTCPTSQMSPG*GWDGGK
Trigger: TTTTCCCCCATCCCATCCCCACCCTGGACTCATTTG...ACTAGTTGGGCACGTGCCAATAATATTCTCTCCATTCCTTATCTGCCATCTCTG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000373547.9
ENST00000415905.5
ENST00000451402.5
3UTR-3UTR TCA 90 bp AAGACGTCAAAATCTTCCAACAGTTCTAGACATCCAGACAGAATAGGAGCTGATTCAAGTCTTCTCAAATaGGTCCAGGGTGGGGATGGG +
Preference number: 2 (lower is better)
Translates to: KTSKSSNSSRHPDRIGADSSLLK*VQGGDG
Trigger: CCCATCCCCACCCTGGACTCATTTGAGAAGACTTGA...ATCAGCTCCTATTCTGTCTGGATGTCTAGAACTGTTGGAAGATTTTGACGTCTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000373547.9
ENST00000415905.5
ENST00000451402.5
3UTR-3UTR TCA 90 bp CAGAGATGGCAGATAAGGAATGGAGAGAATATTATTGGCACGTGCCCAACTAGTCAGGTATACATAACTTaGGGCATTTGGAGTCCATCG +
Preference number: 2 (lower is better)
Translates to: QRWQIRNGENIIGTCPTSQVYIT*GIWSPS
Trigger: CGATGGACTCCAAATGCCTCAAGTTATGTATACCTG...ACTAGTTGGGCACGTGCCAATAATATTCTCTCCATTCCTTATCTGCCATCTCTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000373547.9
ENST00000415905.5
ENST00000451402.5
3UTR-3UTR CCA 90 bp AAGACGTCAAAATCTTCCAACAGTTCTAGACATCCAGACAGAATAGGAGCTGATAAGAGGGCAGAAAAATaGGTCAGCAGGATGGGCGAA +
Preference number: 2 (lower is better)
Translates to: KTSKSSNSSRHPDRIGADKRAEK*VSRMGE
Trigger: TTCGCCCATCCTGCTGACCCATTTTTCTGCCCTCTT...ATCAGCTCCTATTCTGTCTGGATGTCTAGAACTGTTGGAAGATTTTGACGTCTT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000373547.9
ENST00000415905.5
ENST00000451402.5
3UTR-3UTR CCA 90 bp AAGACGTCAAAATCTTCCAACAGTTCTAGACATCCAGACAGAATAGGAGCTGATCCACCTGAATTACACTaGGATCAGGGCAGTAACACG +
Preference number: 2 (lower is better)
Translates to: KTSKSSNSSRHPDRIGADPPELH*DQGSNT
Trigger: CGTGTTACTGCCCTGATCCCAGTGTAATTCAGGTGG...ATCAGCTCCTATTCTGTCTGGATGTCTAGAACTGTTGGAAGATTTTGACGTCTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000373547.9
ENST00000415905.5
ENST00000451402.5
3UTR-3UTR TCA 90 bp AGATTACAGTTCACAAATACAAGAGTCCTAACTTTTCAACCTTTCCAGTTGCAGTCAAGTCTTCTCAAATaGGTCCAGGGTGGGGATGGG +
Preference number: 2 (lower is better)
Translates to: RLQFTNTRVLTFQPFQLQSSLLK*VQGGDG
Trigger: CCCATCCCCACCCTGGACTCATTTGAGAAGACTTGA...CTGCAACTGGAAAGGTTGAAAAGTTAGGACTCTTGTATTTGTGAACTGTAATCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000373547.9
ENST00000415905.5
ENST00000451402.5
3UTR-3UTR TCA 90 bp CAGAGATGGCAGATAAGGAATGGAGAGAATATTATTGGCACGTGCCCAACTAGTTCCAACAAAGGACAATaGAGTTTACATCTGGGACAG +
Preference number: 2 (lower is better)
Translates to: QRWQIRNGENIIGTCPTSSNKGQ*SLHLGQ
Trigger: CTGTCCCAGATGTAAACTTCATTGTCCTTTGTTGGA...ACTAGTTGGGCACGTGCCAATAATATTCTCTCCATTCCTTATCTGCCATCTCTG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000373547.9
ENST00000415905.5
ENST00000451402.5
3UTR-3UTR TCA 90 bp CAGAGATGGCAGATAAGGAATGGAGAGAATATTATTGGCACGTGCCCAACTAGTGTAACACGAAGCTACTaGCCCAACATTAGTTCAAGT +
Preference number: 2 (lower is better)
Translates to: QRWQIRNGENIIGTCPTSVTRSY*PNISSS
Trigger: ACTTGAACTAATGTTGGGTCAGTAGCTTCGTGTTAC...ACTAGTTGGGCACGTGCCAATAATATTCTCTCCATTCCTTATCTGCCATCTCTG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000373547.9
ENST00000415905.5
ENST00000451402.5
3UTR-3UTR CCA 90 bp TGCTTCAGATTACAGTTCACAAATACAAGAGTCCTAACTTTTCAACCTTTCCAGCAAATGAGTCCAGGGTaGGGATGGGATGGGGGAAAA +
Preference number: 2 (lower is better)
Translates to: CFRLQFTNTRVLTFQPFQQMSPG*GWDGGK
Trigger: TTTTCCCCCATCCCATCCCCACCCTGGACTCATTTG...CTGGAAAGGTTGAAAAGTTAGGACTCTTGTATTTGTGAACTGTAATCTGAAGCA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000373547.9
ENST00000415905.5
ENST00000451402.5
3UTR-3UTR TCA 90 bp AAGACGTCAAAATCTTCCAACAGTTCTAGACATCCAGACAGAATAGGAGCTGATCAGGTATACATAACTTaGGGCATTTGGAGTCCATCG +
Preference number: 2 (lower is better)
Translates to: KTSKSSNSSRHPDRIGADQVYIT*GIWSPS
Trigger: CGATGGACTCCAAATGCCTCAAGTTATGTATACCTG...ATCAGCTCCTATTCTGTCTGGATGTCTAGAACTGTTGGAAGATTTTGACGTCTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000373547.9
ENST00000415905.5
ENST00000451402.5
3UTR-3UTR TCA 90 bp CAGAGATGGCAGATAAGGAATGGAGAGAATATTATTGGCACGTGCCCAACTAGTTTGCATATTCAGAACTaGTCATCACAACCCTTTGGA +
Preference number: 2 (lower is better)
Translates to: QRWQIRNGENIIGTCPTSLHIQN*SSQPFG
Trigger: TCCAAAGGGTTGTGATGATCAGTTCTGAATATGCAA...ACTAGTTGGGCACGTGCCAATAATATTCTCTCCATTCCTTATCTGCCATCTCTG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000373547.9
ENST00000415905.5
ENST00000451402.5
3UTR-3UTR TCA 90 bp AAGACGTCAAAATCTTCCAACAGTTCTAGACATCCAGACAGAATAGGAGCTGATAAATACCTTTCCACCTaGATTACACTGGGATCAGGG +
Preference number: 2 (lower is better)
Translates to: KTSKSSNSSRHPDRIGADKYLST*ITLGSG
Trigger: CCCTGATCCCAGTGTAATTCAGGTGGAAAGGTATTT...ATCAGCTCCTATTCTGTCTGGATGTCTAGAACTGTTGGAAGATTTTGACGTCTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000373547.9
ENST00000415905.5
ENST00000451402.5
3UTR-3UTR GCA 90 bp CAGAGATGGCAGATAAGGAATGGAGAGAATATTATTGGCACGTGCCCAACTAGTCCACACCAAGTTGTCTaGATCATTAATTTCCAGTGT +
Preference number: 2 (lower is better)
Translates to: QRWQIRNGENIIGTCPTSPHQVV*IINFQC
Trigger: ACACTGGAAATTAATGATGCAGACAACTTGGTGTGG...ACTAGTTGGGCACGTGCCAATAATATTCTCTCCATTCCTTATCTGCCATCTCTG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000373547.9
ENST00000415905.5
ENST00000451402.5
3UTR-3UTR CCA 90 bp TGCTTCAGATTACAGTTCACAAATACAAGAGTCCTAACTTTTCAACCTTTCCAGAAGAGGGCAGAAAAATaGGTCAGCAGGATGGGCGAA +
Preference number: 2 (lower is better)
Translates to: CFRLQFTNTRVLTFQPFQKRAEK*VSRMGE
Trigger: TTCGCCCATCCTGCTGACCCATTTTTCTGCCCTCTT...CTGGAAAGGTTGAAAAGTTAGGACTCTTGTATTTGTGAACTGTAATCTGAAGCA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000373547.9
ENST00000415905.5
ENST00000451402.5
3UTR-3UTR TCA 90 bp CAGAGATGGCAGATAAGGAATGGAGAGAATATTATTGGCACGTGCCCAACTAGTTTACTTACACAAAGCTaGAATATGGTATCACAGACC +
Preference number: 2 (lower is better)
Translates to: QRWQIRNGENIIGTCPTSLLTQS*NMVSQT
Trigger: GGTCTGTGATACCATATTTCAGCTTTGTGTAAGTAA...ACTAGTTGGGCACGTGCCAATAATATTCTCTCCATTCCTTATCTGCCATCTCTG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000373547.9
ENST00000415905.5
ENST00000451402.5
3UTR-3UTR GCA 90 bp CAGAGATGGCAGATAAGGAATGGAGAGAATATTATTGGCACGTGCCCAACTAGTGAACAGATGCTAAAGTaGTTTATTAATTGGCTGGCT +
Preference number: 2 (lower is better)
Translates to: QRWQIRNGENIIGTCPTSEQMLK*FINWLA
Trigger: AGCCAGCCAATTAATAAAGCACTTTAGCATCTGTTC...ACTAGTTGGGCACGTGCCAATAATATTCTCTCCATTCCTTATCTGCCATCTCTG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000373547.9
ENST00000415905.5
ENST00000451402.5
3UTR-3UTR TCA 90 bp AAGACGTCAAAATCTTCCAACAGTTCTAGACATCCAGACAGAATAGGAGCTGATTTGCATATTCAGAACTaGTCATCACAACCCTTTGGA +
Preference number: 2 (lower is better)
Translates to: KTSKSSNSSRHPDRIGADLHIQN*SSQPFG
Trigger: TCCAAAGGGTTGTGATGATCAGTTCTGAATATGCAA...ATCAGCTCCTATTCTGTCTGGATGTCTAGAACTGTTGGAAGATTTTGACGTCTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000373547.9
ENST00000415905.5
ENST00000451402.5
3UTR-3UTR GCA 90 bp AAGACGTCAAAATCTTCCAACAGTTCTAGACATCCAGACAGAATAGGAGCTGATATTAGTTCAAGTGTGTaGAGCAAATGTCTTAGCCAC +
Preference number: 2 (lower is better)
Translates to: KTSKSSNSSRHPDRIGADISSSV*SKCLSH
Trigger: GTGGCTAAGACATTTGCTGCACACACTTGAACTAAT...ATCAGCTCCTATTCTGTCTGGATGTCTAGAACTGTTGGAAGATTTTGACGTCTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000373547.9
ENST00000415905.5
ENST00000451402.5
3UTR-3UTR GCA 90 bp AAGACGTCAAAATCTTCCAACAGTTCTAGACATCCAGACAGAATAGGAGCTGATCCACACCAAGTTGTCTaGATCATTAATTTCCAGTGT +
Preference number: 2 (lower is better)
Translates to: KTSKSSNSSRHPDRIGADPHQVV*IINFQC
Trigger: ACACTGGAAATTAATGATGCAGACAACTTGGTGTGG...ATCAGCTCCTATTCTGTCTGGATGTCTAGAACTGTTGGAAGATTTTGACGTCTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000373547.9
ENST00000415905.5
ENST00000451402.5
3UTR-3UTR CCA 90 bp CAGAGATGGCAGATAAGGAATGGAGAGAATATTATTGGCACGTGCCCAACTAGTCTTGTCCTTATTAAGTaGACAGTTGCATATTCAGAA +
Preference number: 2 (lower is better)
Translates to: QRWQIRNGENIIGTCPTSLVLIK*TVAYSE
Trigger: TTCTGAATATGCAACTGTCCACTTAATAAGGACAAG...ACTAGTTGGGCACGTGCCAATAATATTCTCTCCATTCCTTATCTGCCATCTCTG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000373547.9
ENST00000415905.5
ENST00000451402.5
3UTR-3UTR TCA 90 bp AAGACGTCAAAATCTTCCAACAGTTCTAGACATCCAGACAGAATAGGAGCTGATGATTGTAAACTGGATTaGTCACATTCTACTCAACTG +
Preference number: 2 (lower is better)
Translates to: KTSKSSNSSRHPDRIGADDCKLD*SHSTQL
Trigger: CAGTTGAGTAGAATGTGATCAATCCAGTTTACAATC...ATCAGCTCCTATTCTGTCTGGATGTCTAGAACTGTTGGAAGATTTTGACGTCTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000373547.9
ENST00000415905.5
ENST00000451402.5
3UTR-3UTR TCA 90 bp AAGACGTCAAAATCTTCCAACAGTTCTAGACATCCAGACAGAATAGGAGCTGATAAGCCATTATTCAGTTaGAGAGAAATCAGGCAAAAC +
Preference number: 2 (lower is better)
Translates to: KTSKSSNSSRHPDRIGADKPLFS*REIRQN
Trigger: GTTTTGCCTGATTTCTCTTCAACTGAATAATGGCTT...ATCAGCTCCTATTCTGTCTGGATGTCTAGAACTGTTGGAAGATTTTGACGTCTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000373547.9
ENST00000415905.5
ENST00000451402.5
3UTR-3UTR CCA 90 bp AAGACGTCAAAATCTTCCAACAGTTCTAGACATCCAGACAGAATAGGAGCTGATCACAAAGCTGAAATATaGTATCACAGACCTTTGCAA +
Preference number: 2 (lower is better)
Translates to: KTSKSSNSSRHPDRIGADHKAEI*YHRPLQ
Trigger: TTGCAAAGGTCTGTGATACCATATTTCAGCTTTGTG...ATCAGCTCCTATTCTGTCTGGATGTCTAGAACTGTTGGAAGATTTTGACGTCTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000373547.9
ENST00000415905.5
ENST00000451402.5
3UTR-3UTR CCA 90 bp AAGACGTCAAAATCTTCCAACAGTTCTAGACATCCAGACAGAATAGGAGCTGATGCTTTATTAATTGGCTaGCTTCACAAGTATTTCCTG +
Preference number: 2 (lower is better)
Translates to: KTSKSSNSSRHPDRIGADALLIG*LHKYFL
Trigger: CAGGAAATACTTGTGAAGCCAGCCAATTAATAAAGC...ATCAGCTCCTATTCTGTCTGGATGTCTAGAACTGTTGGAAGATTTTGACGTCTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000373547.9
ENST00000415905.5
ENST00000451402.5
3UTR-3UTR CCA 90 bp AAGACGTCAAAATCTTCCAACAGTTCTAGACATCCAGACAGAATAGGAGCTGATAGGAAAGGGAGTAAATaGCAATTCAAAGTAGACAGT +
Preference number: 2 (lower is better)
Translates to: KTSKSSNSSRHPDRIGADRKGSK*QFKVDS
Trigger: ACTGTCTACTTTGAATTGCCATTTACTCCCTTTCCT...ATCAGCTCCTATTCTGTCTGGATGTCTAGAACTGTTGGAAGATTTTGACGTCTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000373547.9
ENST00000415905.5
ENST00000451402.5
3UTR-3UTR GCA 90 bp AAGACGTCAAAATCTTCCAACAGTTCTAGACATCCAGACAGAATAGGAGCTGATCATAAATCTATGACTTaGAAGTATCTTCCACCACAT +
Preference number: 2 (lower is better)
Translates to: KTSKSSNSSRHPDRIGADHKSMT*KYLPPH
Trigger: ATGTGGTGGAAGATACTTGCAAGTCATAGATTTATG...ATCAGCTCCTATTCTGTCTGGATGTCTAGAACTGTTGGAAGATTTTGACGTCTT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000373547.9
ENST00000415905.5
ENST00000451402.5
3UTR-3UTR CCA 90 bp AAGACGTCAAAATCTTCCAACAGTTCTAGACATCCAGACAGAATAGGAGCTGATATAGCCCTTATTTATTaGAGGGATCCAAAATATTCC +
Preference number: 2 (lower is better)
Translates to: KTSKSSNSSRHPDRIGADIALIY*RDPKYS
Trigger: GGAATATTTTGGATCCCTCCAATAAATAAGGGCTAT...ATCAGCTCCTATTCTGTCTGGATGTCTAGAACTGTTGGAAGATTTTGACGTCTT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000373547.9
ENST00000415905.5
ENST00000451402.5
3UTR-3UTR TCA 90 bp TGCTTCAGATTACAGTTCACAAATACAAGAGTCCTAACTTTTCAACCTTTCCAGGATTGTAAACTGGATTaGTCACATTCTACTCAACTG +
Preference number: 2 (lower is better)
Translates to: CFRLQFTNTRVLTFQPFQDCKLD*SHSTQL
Trigger: CAGTTGAGTAGAATGTGATCAATCCAGTTTACAATC...CTGGAAAGGTTGAAAAGTTAGGACTCTTGTATTTGTGAACTGTAATCTGAAGCA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000373547.9
ENST00000415905.5
ENST00000451402.5
3UTR-3UTR CAA 90 bp AAGACGTCAAAATCTTCCAACAGTTCTAGACATCCAGACAGAATAGGAGCTGATCATAACTTGAGGCATTaGGAGTCCATCGTGCCCACT +
Preference number: 3 (lower is better)
Translates to: KTSKSSNSSRHPDRIGADHNLRH*ESIVPT
Trigger: AGTGGGCACGATGGACTCCAAATGCCTCAAGTTATG...ATCAGCTCCTATTCTGTCTGGATGTCTAGAACTGTTGGAAGATTTTGACGTCTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000373547.9
ENST00000415905.5
ENST00000451402.5
3UTR TCA 72 bp AATTACACTGGGATCAGGGCAGTAACACGAAGCTACTaGCCCAACATTAGTTCAAGTGTGTGCAGCAAATGT +
Preference number: 3 (lower is better)
Translates to: NYTGIRAVTRSY*PNISSSVCSKC
Trigger: ACATTTGCTGCACACACTTGAACTAATGTTGGGTCAGTAGCTTCGTGTTACTGCCCTGATCCCAGTGTAATT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000373547.9
ENST00000415905.5
ENST00000451402.5
3UTR-3UTR CAA 90 bp CAGAGATGGCAGATAAGGAATGGAGAGAATATTATTGGCACGTGCCCAACTAGTACAGGTATACATAACTaGAGGCATTTGGAGTCCATC +
Preference number: 3 (lower is better)
Translates to: QRWQIRNGENIIGTCPTSTGIHN*RHLESI
Trigger: GATGGACTCCAAATGCCTCAAGTTATGTATACCTGT...ACTAGTTGGGCACGTGCCAATAATATTCTCTCCATTCCTTATCTGCCATCTCTG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000373547.9
ENST00000415905.5
ENST00000451402.5
3UTR-3UTR CAA 90 bp AGATTACAGTTCACAAATACAAGAGTCCTAACTTTTCAACCTTTCCAGTTGCAGCATAACTTGAGGCATTaGGAGTCCATCGTGCCCACT +
Preference number: 3 (lower is better)
Translates to: RLQFTNTRVLTFQPFQLQHNLRH*ESIVPT
Trigger: AGTGGGCACGATGGACTCCAAATGCCTCAAGTTATG...CTGCAACTGGAAAGGTTGAAAAGTTAGGACTCTTGTATTTGTGAACTGTAATCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000373547.9
ENST00000415905.5
ENST00000451402.5
3UTR-3UTR CAA 90 bp CAGAGATGGCAGATAAGGAATGGAGAGAATATTATTGGCACGTGCCCAACTAGTAAAGACCACACCAAGTaGTCTGCATCATTAATTTCC +
Preference number: 3 (lower is better)
Translates to: QRWQIRNGENIIGTCPTSKDHTK*SASLIS
Trigger: GGAAATTAATGATGCAGACAACTTGGTGTGGTCTTT...ACTAGTTGGGCACGTGCCAATAATATTCTCTCCATTCCTTATCTGCCATCTCTG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000373547.9
ENST00000415905.5
ENST00000451402.5
3UTR-3UTR CAA 90 bp AAGACGTCAAAATCTTCCAACAGTTCTAGACATCCAGACAGAATAGGAGCTGATATGGAGAGAATATTATaGGCACGTGCCCAACTAGTG +
Preference number: 3 (lower is better)
Translates to: KTSKSSNSSRHPDRIGADMERIL*ARAQLV
Trigger: CACTAGTTGGGCACGTGCCAATAATATTCTCTCCAT...ATCAGCTCCTATTCTGTCTGGATGTCTAGAACTGTTGGAAGATTTTGACGTCTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000373547.9
ENST00000415905.5
ENST00000451402.5
3UTR GCA 72 bp TGGCAGATAAGGAATGGAGAGAATATTATTGGCACGTaGCCAACTAGTGACAAACAAATGCAGTACACAATG +
Preference number: 3 (lower is better)
Translates to: WQIRNGENIIGT*PTSDKQMQYTM
Trigger: CATTGTGTACTGCATTTGTTTGTCACTAGTTGGGCACGTGCCAATAATATTCTCTCCATTCCTTATCTGCCA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000373547.9
ENST00000415905.5
ENST00000451402.5
3UTR-3UTR CAA 90 bp AAGACGTCAAAATCTTCCAACAGTTCTAGACATCCAGACAGAATAGGAGCTGATGAGATACTGGAATACTaGTCCTTATTAAGTGGACAG +
Preference number: 3 (lower is better)
Translates to: KTSKSSNSSRHPDRIGADEILEY*SLLSGQ
Trigger: CTGTCCACTTAATAAGGACAAGTATTCCAGTATCTC...ATCAGCTCCTATTCTGTCTGGATGTCTAGAACTGTTGGAAGATTTTGACGTCTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000373547.9
ENST00000415905.5
ENST00000451402.5
3UTR-3UTR CAA 90 bp AAGACGTCAAAATCTTCCAACAGTTCTAGACATCCAGACAGAATAGGAGCTGATAAAGACCACACCAAGTaGTCTGCATCATTAATTTCC +
Preference number: 3 (lower is better)
Translates to: KTSKSSNSSRHPDRIGADKDHTK*SASLIS
Trigger: GGAAATTAATGATGCAGACAACTTGGTGTGGTCTTT...ATCAGCTCCTATTCTGTCTGGATGTCTAGAACTGTTGGAAGATTTTGACGTCTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000373547.9
ENST00000415905.5
ENST00000451402.5
3UTR-3UTR CAA 90 bp AGATTACAGTTCACAAATACAAGAGTCCTAACTTTTCAACCTTTCCAGTTGCAGACAGGTATACATAACTaGAGGCATTTGGAGTCCATC +
Preference number: 3 (lower is better)
Translates to: RLQFTNTRVLTFQPFQLQTGIHN*RHLESI
Trigger: GATGGACTCCAAATGCCTCAAGTTATGTATACCTGT...CTGCAACTGGAAAGGTTGAAAAGTTAGGACTCTTGTATTTGTGAACTGTAATCT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000373547.9
ENST00000415905.5
ENST00000451402.5
3UTR-3UTR CAA 90 bp TGCTTCAGATTACAGTTCACAAATACAAGAGTCCTAACTTTTCAACCTTTCCAGACAGGTATACATAACTaGAGGCATTTGGAGTCCATC +
Preference number: 3 (lower is better)
Translates to: CFRLQFTNTRVLTFQPFQTGIHN*RHLESI
Trigger: GATGGACTCCAAATGCCTCAAGTTATGTATACCTGT...CTGGAAAGGTTGAAAAGTTAGGACTCTTGTATTTGTGAACTGTAATCTGAAGCA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000373547.9
ENST00000415905.5
ENST00000451402.5
CDS-3UTR TCA 90 bp AAGACGTCAAAATCTTCCAACAGTTCTAGACATCCAGACAGAATAGGAGCTGATGTCACGTCCGGCCCGTaGGTGGCGCCTGCGCAGCGC +
Preference number: 4 (lower is better)
Translates to: KTSKSSNSSRHPDRIGADVTSGP*VAPAQR
Trigger: GCGCTGCGCAGGCGCCACTCACGGGCCGGACGTGAC...ATCAGCTCCTATTCTGTCTGGATGTCTAGAACTGTTGGAAGATTTTGACGTCTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000415905.5
ENST00000451402.5
CDS-3UTR GCA 90 bp CAGAGATGGCAGATAAGGAATGGAGAGAATATTATTGGCACGTGCCCAACTAGTCCCGTGAGTGGCGCCTaGGCAGCGCCGTTAAAGCGC +
Preference number: 4 (lower is better)
Translates to: QRWQIRNGENIIGTCPTSPVSGA*AAPLKR
Trigger: GCGCTTTAACGGCGCTGCGCAGGCGCCACTCACGGG...ACTAGTTGGGCACGTGCCAATAATATTCTCTCCATTCCTTATCTGCCATCTCTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000415905.5
ENST00000451402.5
CDS-3UTR CCA 90 bp AAGACGTCAAAATCTTCCAACAGTTCTAGACATCCAGACAGAATAGGAGCTGATGCCCGGCGCCCCCTCTaGCTGAACCCCGACTGCAGG +
Preference number: 4 (lower is better)
Translates to: KTSKSSNSSRHPDRIGADARRPL*LNPDCR
Trigger: CCTGCAGTCGGGGTTCAGCCAGAGGGGGCGCCGGGC...ATCAGCTCCTATTCTGTCTGGATGTCTAGAACTGTTGGAAGATTTTGACGTCTT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000415905.5
ENST00000451402.5
CDS-3UTR CCA 90 bp CAGAGATGGCAGATAAGGAATGGAGAGAATATTATTGGCACGTGCCCAACTAGTTACCGGCGGGGGTCCTaGAGAAAGGAAGGGCCGGCC +
Preference number: 4 (lower is better)
Translates to: QRWQIRNGENIIGTCPTSYRRGS*RKEGPA
Trigger: GGCCGGCCCTTCCTTTCTCCAGGACCCCCGCCGGTA...ACTAGTTGGGCACGTGCCAATAATATTCTCTCCATTCCTTATCTGCCATCTCTG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000451402.5
CDS-3UTR TCA 90 bp AGATTACAGTTCACAAATACAAGAGTCCTAACTTTTCAACCTTTCCAGTTGCAGGTCACGTCCGGCCCGTaGGTGGCGCCTGCGCAGCGC +
Preference number: 4 (lower is better)
Translates to: RLQFTNTRVLTFQPFQLQVTSGP*VAPAQR
Trigger: GCGCTGCGCAGGCGCCACTCACGGGCCGGACGTGAC...CTGCAACTGGAAAGGTTGAAAAGTTAGGACTCTTGTATTTGTGAACTGTAATCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000415905.5
ENST00000451402.5
CDS-3UTR GCA 90 bp AAGACGTCAAAATCTTCCAACAGTTCTAGACATCCAGACAGAATAGGAGCTGATTGGCTGAACCCCGACTaGAGGCCCCAAGAGAGCCCG +
Preference number: 4 (lower is better)
Translates to: KTSKSSNSSRHPDRIGADWLNPD*RPQESP
Trigger: CGGGCTCTCTTGGGGCCTGCAGTCGGGGTTCAGCCA...ATCAGCTCCTATTCTGTCTGGATGTCTAGAACTGTTGGAAGATTTTGACGTCTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000415905.5
ENST00000451402.5
CDS-3UTR GCA 90 bp TGCTTCAGATTACAGTTCACAAATACAAGAGTCCTAACTTTTCAACCTTTCCAGCCCGTGAGTGGCGCCTaGGCAGCGCCGTTAAAGCGC +
Preference number: 4 (lower is better)
Translates to: CFRLQFTNTRVLTFQPFQPVSGA*AAPLKR
Trigger: GCGCTTTAACGGCGCTGCGCAGGCGCCACTCACGGG...CTGGAAAGGTTGAAAAGTTAGGACTCTTGTATTTGTGAACTGTAATCTGAAGCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000415905.5
ENST00000451402.5
CDS-3UTR GCA 90 bp AGATTACAGTTCACAAATACAAGAGTCCTAACTTTTCAACCTTTCCAGTTGCAGTGGCTGAACCCCGACTaGAGGCCCCAAGAGAGCCCG +
Preference number: 4 (lower is better)
Translates to: RLQFTNTRVLTFQPFQLQWLNPD*RPQESP
Trigger: CGGGCTCTCTTGGGGCCTGCAGTCGGGGTTCAGCCA...CTGCAACTGGAAAGGTTGAAAAGTTAGGACTCTTGTATTTGTGAACTGTAATCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000415905.5
ENST00000451402.5
CDS-3UTR TCA 90 bp CAGAGATGGCAGATAAGGAATGGAGAGAATATTATTGGCACGTGCCCAACTAGTTCAAGTCTTCTCAAATaGGTCCAGGGTGGGGATGGG +
Preference number: 4 (lower is better)
Translates to: QRWQIRNGENIIGTCPTSSSLLK*VQGGDG
Trigger: CCCATCCCCACCCTGGACTCATTTGAGAAGACTTGA...ACTAGTTGGGCACGTGCCAATAATATTCTCTCCATTCCTTATCTGCCATCTCTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000373547.9
ENST00000415905.5
ENST00000451402.5
CDS-3UTR TCA 90 bp CAGAGATGGCAGATAAGGAATGGAGAGAATATTATTGGCACGTGCCCAACTAGTCCTTCGTGCACTAGTTaGTGTGCTCTGCAGATGAGT +
Preference number: 4 (lower is better)
Translates to: QRWQIRNGENIIGTCPTSPSCTS*CALQMS
Trigger: ACTCATCTGCAGAGCACATCAACTAGTGCACGAAGG...ACTAGTTGGGCACGTGCCAATAATATTCTCTCCATTCCTTATCTGCCATCTCTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000373547.9
ENST00000415905.5
ENST00000451402.5
CDS-3UTR CCA 90 bp AAGACGTCAAAATCTTCCAACAGTTCTAGACATCCAGACAGAATAGGAGCTGATCTTCAGGTCGTTCTCTaGCAGGTACTTGCACAGCCG +
Preference number: 4 (lower is better)
Translates to: KTSKSSNSSRHPDRIGADLQVVL*QVLAQP
Trigger: CGGCTGTGCAAGTACCTGCCAGAGAACGACCTGAAG...ATCAGCTCCTATTCTGTCTGGATGTCTAGAACTGTTGGAAGATTTTGACGTCTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000373547.9
ENST00000415905.5
ENST00000451402.5
CDS-3UTR CCA 90 bp CAGAGATGGCAGATAAGGAATGGAGAGAATATTATTGGCACGTGCCCAACTAGTGCCTCAAAGGAAATATaGCGTTGTCGTTCTGGGAGG +
Preference number: 4 (lower is better)
Translates to: QRWQIRNGENIIGTCPTSASKEI*RCRSGR
Trigger: CCTCCCAGAACGACAACGCCATATTTCCTTTGAGGC...ACTAGTTGGGCACGTGCCAATAATATTCTCTCCATTCCTTATCTGCCATCTCTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000373547.9
ENST00000415905.5
ENST00000451402.5
CDS-3UTR TCA 90 bp AAGACGTCAAAATCTTCCAACAGTTCTAGACATCCAGACAGAATAGGAGCTGATCCTTCGTGCACTAGTTaGTGTGCTCTGCAGATGAGT +
Preference number: 4 (lower is better)
Translates to: KTSKSSNSSRHPDRIGADPSCTS*CALQMS
Trigger: ACTCATCTGCAGAGCACATCAACTAGTGCACGAAGG...ATCAGCTCCTATTCTGTCTGGATGTCTAGAACTGTTGGAAGATTTTGACGTCTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000373547.9
ENST00000415905.5
ENST00000451402.5
CDS-3UTR TCA 90 bp CAGAGATGGCAGATAAGGAATGGAGAGAATATTATTGGCACGTGCCCAACTAGTAAATACCTTTCCACCTaGATTACACTGGGATCAGGG +
Preference number: 4 (lower is better)
Translates to: QRWQIRNGENIIGTCPTSKYLST*ITLGSG
Trigger: CCCTGATCCCAGTGTAATTCAGGTGGAAAGGTATTT...ACTAGTTGGGCACGTGCCAATAATATTCTCTCCATTCCTTATCTGCCATCTCTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000373547.9
ENST00000415905.5
ENST00000451402.5
CDS-3UTR GCA 90 bp CAGAGATGGCAGATAAGGAATGGAGAGAATATTATTGGCACGTGCCCAACTAGTCTCATTTGTGACCTTTaGTCCAAAAAGCCAACCTGC +
Preference number: 4 (lower is better)
Translates to: QRWQIRNGENIIGTCPTSLICDL*SKKPTC
Trigger: GCAGGTTGGCTTTTTGGAGCAAAGGTCACAAATGAG...ACTAGTTGGGCACGTGCCAATAATATTCTCTCCATTCCTTATCTGCCATCTCTG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000373547.9
ENST00000415905.5
ENST00000451402.5
CDS-3UTR CCA 90 bp AGATTACAGTTCACAAATACAAGAGTCCTAACTTTTCAACCTTTCCAGTTGCAGCTTCAGGTCGTTCTCTaGCAGGTACTTGCACAGCCG +
Preference number: 4 (lower is better)
Translates to: RLQFTNTRVLTFQPFQLQLQVVL*QVLAQP
Trigger: CGGCTGTGCAAGTACCTGCCAGAGAACGACCTGAAG...CTGCAACTGGAAAGGTTGAAAAGTTAGGACTCTTGTATTTGTGAACTGTAATCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000373547.9
ENST00000415905.5
ENST00000451402.5
CDS-3UTR CCA 90 bp TGCTTCAGATTACAGTTCACAAATACAAGAGTCCTAACTTTTCAACCTTTCCAGCTTCAGGTCGTTCTCTaGCAGGTACTTGCACAGCCG +
Preference number: 4 (lower is better)
Translates to: CFRLQFTNTRVLTFQPFQLQVVL*QVLAQP
Trigger: CGGCTGTGCAAGTACCTGCCAGAGAACGACCTGAAG...CTGGAAAGGTTGAAAAGTTAGGACTCTTGTATTTGTGAACTGTAATCTGAAGCA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000373547.9
ENST00000415905.5
ENST00000451402.5
CDS-3UTR CCA 90 bp CAGAGATGGCAGATAAGGAATGGAGAGAATATTATTGGCACGTGCCCAACTAGTTCCAAAACCTGGTTCTaGGCTTACAAAGCACACACA +
Preference number: 4 (lower is better)
Translates to: QRWQIRNGENIIGTCPTSSKTWF*AYKAHT
Trigger: TGTGTGTGCTTTGTAAGCCCAGAACCAGGTTTTGGA...ACTAGTTGGGCACGTGCCAATAATATTCTCTCCATTCCTTATCTGCCATCTCTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000373547.9
ENST00000415905.5
ENST00000451402.5
CDS-3UTR TCA 90 bp CAGAGATGGCAGATAAGGAATGGAGAGAATATTATTGGCACGTGCCCAACTAGTGGTGTTGATACTGGCTaGACATTTGACTCTTCTAAG +
Preference number: 4 (lower is better)
Translates to: QRWQIRNGENIIGTCPTSGVDTG*TFDSSK
Trigger: CTTAGAAGAGTCAAATGTTCAGCCAGTATCAACACC...ACTAGTTGGGCACGTGCCAATAATATTCTCTCCATTCCTTATCTGCCATCTCTG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000373547.9
ENST00000415905.5
ENST00000451402.5
CDS-3UTR TCA 90 bp AAGACGTCAAAATCTTCCAACAGTTCTAGACATCCAGACAGAATAGGAGCTGATTTTGTGTCAGGAACCTaGCCTCCAGTTCTGAACAGT +
Preference number: 4 (lower is better)
Translates to: KTSKSSNSSRHPDRIGADFVSGT*PPVLNS
Trigger: ACTGTTCAGAACTGGAGGTCAGGTTCCTGACACAAA...ATCAGCTCCTATTCTGTCTGGATGTCTAGAACTGTTGGAAGATTTTGACGTCTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000373547.9
ENST00000451402.5
CDS-3UTR TCA 90 bp CAGAGATGGCAGATAAGGAATGGAGAGAATATTATTGGCACGTGCCCAACTAGTCACATCTTCAGGATCTaGCCAAACCAGATCACAAAA +
Preference number: 4 (lower is better)
Translates to: QRWQIRNGENIIGTCPTSHIFRI*PNQITK
Trigger: TTTTGTGATCTGGTTTGGTCAGATCCTGAAGATGTG...ACTAGTTGGGCACGTGCCAATAATATTCTCTCCATTCCTTATCTGCCATCTCTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000373547.9
ENST00000415905.5
ENST00000451402.5
CDS-3UTR TCA 90 bp AAGACGTCAAAATCTTCCAACAGTTCTAGACATCCAGACAGAATAGGAGCTGATAGGAATAACACGTTCTaGATCTGGAACTGCCCGGAA +
Preference number: 4 (lower is better)
Translates to: KTSKSSNSSRHPDRIGADRNNTF*IWNCPE
Trigger: TTCCGGGCAGTTCCAGATTCAGAACGTGTTATTCCT...ATCAGCTCCTATTCTGTCTGGATGTCTAGAACTGTTGGAAGATTTTGACGTCTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000373547.9
ENST00000415905.5
ENST00000451402.5
CDS-3UTR TCA 90 bp CAGAGATGGCAGATAAGGAATGGAGAGAATATTATTGGCACGTGCCCAACTAGTGATGCAGATTGCATATaGGATGTACTGTTGATCCAG +
Preference number: 4 (lower is better)
Translates to: QRWQIRNGENIIGTCPTSDADCI*DVLLIQ
Trigger: CTGGATCAACAGTACATCTCATATGCAATCTGCATC...ACTAGTTGGGCACGTGCCAATAATATTCTCTCCATTCCTTATCTGCCATCTCTG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000373547.9
ENST00000415905.5
ENST00000451402.5
CDS-3UTR TCA 90 bp CAGAGATGGCAGATAAGGAATGGAGAGAATATTATTGGCACGTGCCCAACTAGTAGACAGAATAGGAGCTaGTGCAGATTGCATATGAGA +
Preference number: 4 (lower is better)
Translates to: QRWQIRNGENIIGTCPTSRQNRS*CRLHMR
Trigger: TCTCATATGCAATCTGCATCAGCTCCTATTCTGTCT...ACTAGTTGGGCACGTGCCAATAATATTCTCTCCATTCCTTATCTGCCATCTCTG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000373547.9
ENST00000415905.5
ENST00000451402.5
CDS-3UTR GCA 90 bp AGATTACAGTTCACAAATACAAGAGTCCTAACTTTTCAACCTTTCCAGTTGCAGTCTCTGGCAGGTACTTaGACAGCCGCGCTATTTCCA +
Preference number: 4 (lower is better)
Translates to: RLQFTNTRVLTFQPFQLQSLAGT*TAALFP
Trigger: TGGAAATAGCGCGGCTGTGCAAGTACCTGCCAGAGA...CTGCAACTGGAAAGGTTGAAAAGTTAGGACTCTTGTATTTGTGAACTGTAATCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000373547.9
ENST00000415905.5
ENST00000451402.5
CDS-3UTR GCA 90 bp TGCTTCAGATTACAGTTCACAAATACAAGAGTCCTAACTTTTCAACCTTTCCAGTCTCTGGCAGGTACTTaGACAGCCGCGCTATTTCCA +
Preference number: 4 (lower is better)
Translates to: CFRLQFTNTRVLTFQPFQSLAGT*TAALFP
Trigger: TGGAAATAGCGCGGCTGTGCAAGTACCTGCCAGAGA...CTGGAAAGGTTGAAAAGTTAGGACTCTTGTATTTGTGAACTGTAATCTGAAGCA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000373547.9
ENST00000415905.5
ENST00000451402.5
CDS-3UTR GCA 90 bp TGCTTCAGATTACAGTTCACAAATACAAGAGTCCTAACTTTTCAACCTTTCCAGTCCAAAAAGCCAACCTaGTCCTCGGGGACTGATAGC +
Preference number: 4 (lower is better)
Translates to: CFRLQFTNTRVLTFQPFQSKKPT*SSGTDS
Trigger: GCTATCAGTCCCCGAGGAGCAGGTTGGCTTTTTGGA...CTGGAAAGGTTGAAAAGTTAGGACTCTTGTATTTGTGAACTGTAATCTGAAGCA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENST00000373547.9
ENST00000415905.5
ENST00000451402.5
CDS-3UTR GCA 90 bp AGATTACAGTTCACAAATACAAGAGTCCTAACTTTTCAACCTTTCCAGTTGCAGTCCAAAAAGCCAACCTaGTCCTCGGGGACTGATAGC +
Preference number: 4 (lower is better)
Translates to: RLQFTNTRVLTFQPFQLQSKKPT*SSGTDS
Trigger: GCTATCAGTCCCCGAGGAGCAGGTTGGCTTTTTGGA...CTGCAACTGGAAAGGTTGAAAAGTTAGGACTCTTGTATTTGTGAACTGTAATCT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENST00000373547.9
ENST00000415905.5
ENST00000451402.5
CDS-3UTR CCA 90 bp CAGAGATGGCAGATAAGGAATGGAGAGAATATTATTGGCACGTGCCCAACTAGTGGAGATAAACCACCATaGACACACAAAATCTGCTCA +
Preference number: 4 (lower is better)
Translates to: QRWQIRNGENIIGTCPTSGDKPP*THKICS
Trigger: TGAGCAGATTTTGTGTGTCCATGGTGGTTTATCTCC...ACTAGTTGGGCACGTGCCAATAATATTCTCTCCATTCCTTATCTGCCATCTCTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000373547.9
ENST00000415905.5
ENST00000451402.5
CDS-3UTR CCA 90 bp AGATTACAGTTCACAAATACAAGAGTCCTAACTTTTCAACCTTTCCAGTTGCAGCAAATGAGTCCAGGGTaGGGATGGGATGGGGGAAAA +
Preference number: 4 (lower is better)
Translates to: RLQFTNTRVLTFQPFQLQQMSPG*GWDGGK
Trigger: TTTTCCCCCATCCCATCCCCACCCTGGACTCATTTG...CTGCAACTGGAAAGGTTGAAAAGTTAGGACTCTTGTATTTGTGAACTGTAATCT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000373547.9
ENST00000415905.5
ENST00000451402.5
CDS-3UTR CCA 90 bp CAGAGATGGCAGATAAGGAATGGAGAGAATATTATTGGCACGTGCCCAACTAGTAAATCACCCTGTCCATaGATATCTCCACACACTGTT +
Preference number: 4 (lower is better)
Translates to: QRWQIRNGENIIGTCPTSKSPCP*ISPHTV
Trigger: AACAGTGTGTGGAGATATCCATGGACAGGGTGATTT...ACTAGTTGGGCACGTGCCAATAATATTCTCTCCATTCCTTATCTGCCATCTCTG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000415905.5
CDS-3UTR TCA 90 bp CAGAGATGGCAGATAAGGAATGGAGAGAATATTATTGGCACGTGCCCAACTAGTATGCAAGAAGGTAAGTaGAGGTCTCCAAACTATAGT +
Preference number: 4 (lower is better)
Translates to: QRWQIRNGENIIGTCPTSMQEGK*RSPNYS
Trigger: ACTATAGTTTGGAGACCTTCACTTACCTTCTTGCAT...ACTAGTTGGGCACGTGCCAATAATATTCTCTCCATTCCTTATCTGCCATCTCTG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000373547.9
ENST00000415905.5
ENST00000451402.5
CDS-3UTR TCA 90 bp CAGAGATGGCAGATAAGGAATGGAGAGAATATTATTGGCACGTGCCCAACTAGTTTAAAGCTGCTACTGTaGGCATGTCAAAAACTTTGG +
Preference number: 4 (lower is better)
Translates to: QRWQIRNGENIIGTCPTSLKLLL*ACQKLW
Trigger: CCAAAGTTTTTGACATGCTCACAGTAGCAGCTTTAA...ACTAGTTGGGCACGTGCCAATAATATTCTCTCCATTCCTTATCTGCCATCTCTG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000373547.9
ENST00000415905.5
ENST00000451402.5
CDS-3UTR GCA 90 bp CAGAGATGGCAGATAAGGAATGGAGAGAATATTATTGGCACGTGCCCAACTAGTATTAGTTCAAGTGTGTaGAGCAAATGTCTTAGCCAC +
Preference number: 4 (lower is better)
Translates to: QRWQIRNGENIIGTCPTSISSSV*SKCLSH
Trigger: GTGGCTAAGACATTTGCTGCACACACTTGAACTAAT...ACTAGTTGGGCACGTGCCAATAATATTCTCTCCATTCCTTATCTGCCATCTCTG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000373547.9
ENST00000415905.5
ENST00000451402.5
CDS-3UTR CCA 90 bp AAGACGTCAAAATCTTCCAACAGTTCTAGACATCCAGACAGAATAGGAGCTGATCCTGATTCCGTTCGATaGTTCGAATTTGATCCAGTG +
Preference number: 4 (lower is better)
Translates to: KTSKSSNSSRHPDRIGADPDSVR*FEFDPV
Trigger: CACTGGATCAAATTCGAACCATCGAACGGAATCAGG...ATCAGCTCCTATTCTGTCTGGATGTCTAGAACTGTTGGAAGATTTTGACGTCTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000373547.9
ENST00000415905.5
ENST00000451402.5
CDS-3UTR CCA 90 bp TGCTTCAGATTACAGTTCACAAATACAAGAGTCCTAACTTTTCAACCTTTCCAGGCCTCAAAGGAAATATaGCGTTGTCGTTCTGGGAGG +
Preference number: 4 (lower is better)
Translates to: CFRLQFTNTRVLTFQPFQASKEI*RCRSGR
Trigger: CCTCCCAGAACGACAACGCCATATTTCCTTTGAGGC...CTGGAAAGGTTGAAAAGTTAGGACTCTTGTATTTGTGAACTGTAATCTGAAGCA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000373547.9
ENST00000415905.5
ENST00000451402.5
CDS-3UTR CCA 90 bp AGATTACAGTTCACAAATACAAGAGTCCTAACTTTTCAACCTTTCCAGTTGCAGGCCTCAAAGGAAATATaGCGTTGTCGTTCTGGGAGG +
Preference number: 4 (lower is better)
Translates to: RLQFTNTRVLTFQPFQLQASKEI*RCRSGR
Trigger: CCTCCCAGAACGACAACGCCATATTTCCTTTGAGGC...CTGCAACTGGAAAGGTTGAAAAGTTAGGACTCTTGTATTTGTGAACTGTAATCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000373547.9
ENST00000415905.5
ENST00000451402.5
CDS-3UTR CCA 90 bp AGATTACAGTTCACAAATACAAGAGTCCTAACTTTTCAACCTTTCCAGTTGCAGAAGAGGGCAGAAAAATaGGTCAGCAGGATGGGCGAA +
Preference number: 4 (lower is better)
Translates to: RLQFTNTRVLTFQPFQLQKRAEK*VSRMGE
Trigger: TTCGCCCATCCTGCTGACCCATTTTTCTGCCCTCTT...CTGCAACTGGAAAGGTTGAAAAGTTAGGACTCTTGTATTTGTGAACTGTAATCT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000373547.9
ENST00000415905.5
ENST00000451402.5
CDS-3UTR CCA 90 bp AGATTACAGTTCACAAATACAAGAGTCCTAACTTTTCAACCTTTCCAGTTGCAGCCACCTGAATTACACTaGGATCAGGGCAGTAACACG +
Preference number: 4 (lower is better)
Translates to: RLQFTNTRVLTFQPFQLQPPELH*DQGSNT
Trigger: CGTGTTACTGCCCTGATCCCAGTGTAATTCAGGTGG...CTGCAACTGGAAAGGTTGAAAAGTTAGGACTCTTGTATTTGTGAACTGTAATCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000373547.9
ENST00000415905.5
ENST00000451402.5
CDS-3UTR CCA 90 bp TGCTTCAGATTACAGTTCACAAATACAAGAGTCCTAACTTTTCAACCTTTCCAGCCACCTGAATTACACTaGGATCAGGGCAGTAACACG +
Preference number: 4 (lower is better)
Translates to: CFRLQFTNTRVLTFQPFQPPELH*DQGSNT
Trigger: CGTGTTACTGCCCTGATCCCAGTGTAATTCAGGTGG...CTGGAAAGGTTGAAAAGTTAGGACTCTTGTATTTGTGAACTGTAATCTGAAGCA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000373547.9
ENST00000415905.5
ENST00000451402.5
CDS-3UTR CCA 90 bp AAGACGTCAAAATCTTCCAACAGTTCTAGACATCCAGACAGAATAGGAGCTGATTCCAAAACCTGGTTCTaGGCTTACAAAGCACACACA +
Preference number: 4 (lower is better)
Translates to: KTSKSSNSSRHPDRIGADSKTWF*AYKAHT
Trigger: TGTGTGTGCTTTGTAAGCCCAGAACCAGGTTTTGGA...ATCAGCTCCTATTCTGTCTGGATGTCTAGAACTGTTGGAAGATTTTGACGTCTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000373547.9
ENST00000415905.5
ENST00000451402.5
CDS-3UTR TCA 90 bp TGCTTCAGATTACAGTTCACAAATACAAGAGTCCTAACTTTTCAACCTTTCCAGCCTGACCTCCAGTTCTaGACAGTTCACAAAGGTCAT +
Preference number: 4 (lower is better)
Translates to: CFRLQFTNTRVLTFQPFQPDLQF*TVHKGH
Trigger: ATGACCTTTGTGAACTGTTCAGAACTGGAGGTCAGG...CTGGAAAGGTTGAAAAGTTAGGACTCTTGTATTTGTGAACTGTAATCTGAAGCA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000373547.9
ENST00000451402.5
CDS-3UTR TCA 90 bp AGATTACAGTTCACAAATACAAGAGTCCTAACTTTTCAACCTTTCCAGTTGCAGCCTGACCTCCAGTTCTaGACAGTTCACAAAGGTCAT +
Preference number: 4 (lower is better)
Translates to: RLQFTNTRVLTFQPFQLQPDLQF*TVHKGH
Trigger: ATGACCTTTGTGAACTGTTCAGAACTGGAGGTCAGG...CTGCAACTGGAAAGGTTGAAAAGTTAGGACTCTTGTATTTGTGAACTGTAATCT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000373547.9
ENST00000451402.5
CDS-3UTR TCA 90 bp CAGAGATGGCAGATAAGGAATGGAGAGAATATTATTGGCACGTGCCCAACTAGTTTTGATCCAGTGTTTTaGTATCAGGAGATAAACCAC +
Preference number: 4 (lower is better)
Translates to: QRWQIRNGENIIGTCPTSFDPVF*YQEINH
Trigger: GTGGTTTATCTCCTGATATCAAAACACTGGATCAAA...ACTAGTTGGGCACGTGCCAATAATATTCTCTCCATTCCTTATCTGCCATCTCTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000373547.9
ENST00000415905.5
ENST00000451402.5
CDS-3UTR TCA 90 bp CAGAGATGGCAGATAAGGAATGGAGAGAATATTATTGGCACGTGCCCAACTAGTTCGATGGTTCGAATTTaGTCCAGTGTTTTGATATCA +
Preference number: 4 (lower is better)
Translates to: QRWQIRNGENIIGTCPTSSMVRI*SSVLIS
Trigger: TGATATCAAAACACTGGATCAAATTCGAACCATCGA...ACTAGTTGGGCACGTGCCAATAATATTCTCTCCATTCCTTATCTGCCATCTCTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000373547.9
ENST00000415905.5
ENST00000451402.5
CDS-3UTR TCA 90 bp AAGACGTCAAAATCTTCCAACAGTTCTAGACATCCAGACAGAATAGGAGCTGATCACATCTTCAGGATCTaGCCAAACCAGATCACAAAA +
Preference number: 4 (lower is better)
Translates to: KTSKSSNSSRHPDRIGADHIFRI*PNQITK
Trigger: TTTTGTGATCTGGTTTGGTCAGATCCTGAAGATGTG...ATCAGCTCCTATTCTGTCTGGATGTCTAGAACTGTTGGAAGATTTTGACGTCTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000373547.9
ENST00000415905.5
ENST00000451402.5
CDS-3UTR TCA 90 bp AGATTACAGTTCACAAATACAAGAGTCCTAACTTTTCAACCTTTCCAGTTGCAGAGGAATAACACGTTCTaGATCTGGAACTGCCCGGAA +
Preference number: 4 (lower is better)
Translates to: RLQFTNTRVLTFQPFQLQRNNTF*IWNCPE
Trigger: TTCCGGGCAGTTCCAGATTCAGAACGTGTTATTCCT...CTGCAACTGGAAAGGTTGAAAAGTTAGGACTCTTGTATTTGTGAACTGTAATCT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000373547.9
ENST00000415905.5
ENST00000451402.5
CDS-3UTR TCA 90 bp CAGAGATGGCAGATAAGGAATGGAGAGAATATTATTGGCACGTGCCCAACTAGTGATTGTAAACTGGATTaGTCACATTCTACTCAACTG +
Preference number: 4 (lower is better)
Translates to: QRWQIRNGENIIGTCPTSDCKLD*SHSTQL
Trigger: CAGTTGAGTAGAATGTGATCAATCCAGTTTACAATC...ACTAGTTGGGCACGTGCCAATAATATTCTCTCCATTCCTTATCTGCCATCTCTG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000373547.9
ENST00000415905.5
ENST00000451402.5
CDS-3UTR TCA 90 bp AAGACGTCAAAATCTTCCAACAGTTCTAGACATCCAGACAGAATAGGAGCTGATGTAACACGAAGCTACTaGCCCAACATTAGTTCAAGT +
Preference number: 4 (lower is better)
Translates to: KTSKSSNSSRHPDRIGADVTRSY*PNISSS
Trigger: ACTTGAACTAATGTTGGGTCAGTAGCTTCGTGTTAC...ATCAGCTCCTATTCTGTCTGGATGTCTAGAACTGTTGGAAGATTTTGACGTCTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000373547.9
ENST00000415905.5
ENST00000451402.5
CDS-3UTR TCA 90 bp CAGAGATGGCAGATAAGGAATGGAGAGAATATTATTGGCACGTGCCCAACTAGTAAGCCATTATTCAGTTaGAGAGAAATCAGGCAAAAC +
Preference number: 4 (lower is better)
Translates to: QRWQIRNGENIIGTCPTSKPLFS*REIRQN
Trigger: GTTTTGCCTGATTTCTCTTCAACTGAATAATGGCTT...ACTAGTTGGGCACGTGCCAATAATATTCTCTCCATTCCTTATCTGCCATCTCTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000373547.9
ENST00000415905.5
ENST00000451402.5
CDS-3UTR TCA 90 bp AAGACGTCAAAATCTTCCAACAGTTCTAGACATCCAGACAGAATAGGAGCTGATAGACAGAATAGGAGCTaGTGCAGATTGCATATGAGA +
Preference number: 4 (lower is better)
Translates to: KTSKSSNSSRHPDRIGADRQNRS*CRLHMR
Trigger: TCTCATATGCAATCTGCATCAGCTCCTATTCTGTCT...ATCAGCTCCTATTCTGTCTGGATGTCTAGAACTGTTGGAAGATTTTGACGTCTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000373547.9
ENST00000415905.5
ENST00000451402.5
CDS-3UTR TCA 90 bp CAGAGATGGCAGATAAGGAATGGAGAGAATATTATTGGCACGTGCCCAACTAGTTTTCATCCGAAGAACTaGAGGTGCTTTACAAACATT +
Preference number: 4 (lower is better)
Translates to: QRWQIRNGENIIGTCPTSFHPKN*RCFTNI
Trigger: AATGTTTGTAAAGCACCTTCAGTTCTTCGGATGAAA...ACTAGTTGGGCACGTGCCAATAATATTCTCTCCATTCCTTATCTGCCATCTCTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000373547.9
ENST00000415905.5
ENST00000451402.5
CDS-3UTR GCA 90 bp CAGAGATGGCAGATAAGGAATGGAGAGAATATTATTGGCACGTGCCCAACTAGTTGGACACACAAAATCTaGTCATCTATTAAAGCTGCT +
Preference number: 4 (lower is better)
Translates to: QRWQIRNGENIIGTCPTSWTHKI*SSIKAA
Trigger: AGCAGCTTTAATAGATGAGCAGATTTTGTGTGTCCA...ACTAGTTGGGCACGTGCCAATAATATTCTCTCCATTCCTTATCTGCCATCTCTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000373547.9
ENST00000415905.5
ENST00000451402.5
CDS-3UTR GCA 90 bp CAGAGATGGCAGATAAGGAATGGAGAGAATATTATTGGCACGTGCCCAACTAGTAATATTATTGGCACGTaGCCAACTAGTGACAAACAA +
Preference number: 4 (lower is better)
Translates to: QRWQIRNGENIIGTCPTSNIIGT*PTSDKQ
Trigger: TTGTTTGTCACTAGTTGGGCACGTGCCAATAATATT...ACTAGTTGGGCACGTGCCAATAATATTCTCTCCATTCCTTATCTGCCATCTCTG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000373547.9
ENST00000415905.5
ENST00000451402.5
CDS-3UTR CCA 90 bp AAGACGTCAAAATCTTCCAACAGTTCTAGACATCCAGACAGAATAGGAGCTGATGGAGATAAACCACCATaGACACACAAAATCTGCTCA +
Preference number: 4 (lower is better)
Translates to: KTSKSSNSSRHPDRIGADGDKPP*THKICS
Trigger: TGAGCAGATTTTGTGTGTCCATGGTGGTTTATCTCC...ATCAGCTCCTATTCTGTCTGGATGTCTAGAACTGTTGGAAGATTTTGACGTCTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000373547.9
ENST00000415905.5
ENST00000451402.5
CDS-3UTR CCA 90 bp CAGAGATGGCAGATAAGGAATGGAGAGAATATTATTGGCACGTGCCCAACTAGTCACAAAGCTGAAATATaGTATCACAGACCTTTGCAA +
Preference number: 4 (lower is better)
Translates to: QRWQIRNGENIIGTCPTSHKAEI*YHRPLQ
Trigger: TTGCAAAGGTCTGTGATACCATATTTCAGCTTTGTG...ACTAGTTGGGCACGTGCCAATAATATTCTCTCCATTCCTTATCTGCCATCTCTG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000373547.9
ENST00000415905.5
ENST00000451402.5
CDS-3UTR CCA 90 bp CAGAGATGGCAGATAAGGAATGGAGAGAATATTATTGGCACGTGCCCAACTAGTGCTTTATTAATTGGCTaGCTTCACAAGTATTTCCTG +
Preference number: 4 (lower is better)
Translates to: QRWQIRNGENIIGTCPTSALLIG*LHKYFL
Trigger: CAGGAAATACTTGTGAAGCCAGCCAATTAATAAAGC...ACTAGTTGGGCACGTGCCAATAATATTCTCTCCATTCCTTATCTGCCATCTCTG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000373547.9
ENST00000415905.5
ENST00000451402.5
CDS-3UTR CCA 90 bp CAGAGATGGCAGATAAGGAATGGAGAGAATATTATTGGCACGTGCCCAACTAGTAGGAAAGGGAGTAAATaGCAATTCAAAGTAGACAGT +
Preference number: 4 (lower is better)
Translates to: QRWQIRNGENIIGTCPTSRKGSK*QFKVDS
Trigger: ACTGTCTACTTTGAATTGCCATTTACTCCCTTTCCT...ACTAGTTGGGCACGTGCCAATAATATTCTCTCCATTCCTTATCTGCCATCTCTG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000373547.9
ENST00000415905.5
ENST00000451402.5
CDS-3UTR CCA 90 bp CAGAGATGGCAGATAAGGAATGGAGAGAATATTATTGGCACGTGCCCAACTAGTAGATACACAATTTCCTaGAAGCTGATGGAAAGTGAT +
Preference number: 4 (lower is better)
Translates to: QRWQIRNGENIIGTCPTSRYTIS*KLMESD
Trigger: ATCACTTTCCATCAGCTTCCAGGAAATTGTGTATCT...ACTAGTTGGGCACGTGCCAATAATATTCTCTCCATTCCTTATCTGCCATCTCTG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000373547.9
ENST00000415905.5
ENST00000451402.5
CDS-3UTR TCA 90 bp AAGACGTCAAAATCTTCCAACAGTTCTAGACATCCAGACAGAATAGGAGCTGATATGCAAGAAGGTAAGTaGAGGTCTCCAAACTATAGT +
Preference number: 4 (lower is better)
Translates to: KTSKSSNSSRHPDRIGADMQEGK*RSPNYS
Trigger: ACTATAGTTTGGAGACCTTCACTTACCTTCTTGCAT...ATCAGCTCCTATTCTGTCTGGATGTCTAGAACTGTTGGAAGATTTTGACGTCTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000373547.9
ENST00000415905.5
ENST00000451402.5
CDS-3UTR TCA 90 bp TGCTTCAGATTACAGTTCACAAATACAAGAGTCCTAACTTTTCAACCTTTCCAGCAGGTATACATAACTTaGGGCATTTGGAGTCCATCG +
Preference number: 4 (lower is better)
Translates to: CFRLQFTNTRVLTFQPFQQVYIT*GIWSPS
Trigger: CGATGGACTCCAAATGCCTCAAGTTATGTATACCTG...CTGGAAAGGTTGAAAAGTTAGGACTCTTGTATTTGTGAACTGTAATCTGAAGCA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000373547.9
ENST00000415905.5
ENST00000451402.5
CDS-3UTR TCA 90 bp AGATTACAGTTCACAAATACAAGAGTCCTAACTTTTCAACCTTTCCAGTTGCAGAAATACCTTTCCACCTaGATTACACTGGGATCAGGG +
Preference number: 4 (lower is better)
Translates to: RLQFTNTRVLTFQPFQLQKYLST*ITLGSG
Trigger: CCCTGATCCCAGTGTAATTCAGGTGGAAAGGTATTT...CTGCAACTGGAAAGGTTGAAAAGTTAGGACTCTTGTATTTGTGAACTGTAATCT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000373547.9
ENST00000415905.5
ENST00000451402.5
CDS-3UTR GCA 90 bp CAGAGATGGCAGATAAGGAATGGAGAGAATATTATTGGCACGTGCCCAACTAGTAACCAGATCACAAAATaGTCCTTTATGAGGAATTTC +
Preference number: 4 (lower is better)
Translates to: QRWQIRNGENIIGTCPTSNQITK*SFMRNF
Trigger: GAAATTCCTCATAAAGGAGCATTTTGTGATCTGGTT...ACTAGTTGGGCACGTGCCAATAATATTCTCTCCATTCCTTATCTGCCATCTCTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000373547.9
ENST00000415905.5
ENST00000451402.5
CDS-3UTR GCA 90 bp AGATTACAGTTCACAAATACAAGAGTCCTAACTTTTCAACCTTTCCAGTTGCAGCTCATTTGTGACCTTTaGTCCAAAAAGCCAACCTGC +
Preference number: 4 (lower is better)
Translates to: RLQFTNTRVLTFQPFQLQLICDL*SKKPTC
Trigger: GCAGGTTGGCTTTTTGGAGCAAAGGTCACAAATGAG...CTGCAACTGGAAAGGTTGAAAAGTTAGGACTCTTGTATTTGTGAACTGTAATCT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000373547.9
ENST00000415905.5
ENST00000451402.5
CDS-3UTR GCA 90 bp CAGAGATGGCAGATAAGGAATGGAGAGAATATTATTGGCACGTGCCCAACTAGTCATAAATCTATGACTTaGAAGTATCTTCCACCACAT +
Preference number: 4 (lower is better)
Translates to: QRWQIRNGENIIGTCPTSHKSMT*KYLPPH
Trigger: ATGTGGTGGAAGATACTTGCAAGTCATAGATTTATG...ACTAGTTGGGCACGTGCCAATAATATTCTCTCCATTCCTTATCTGCCATCTCTG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000373547.9
ENST00000415905.5
ENST00000451402.5
CDS-3UTR CCA 90 bp AAGACGTCAAAATCTTCCAACAGTTCTAGACATCCAGACAGAATAGGAGCTGATGCATGTCAAAAACTTTaGTACAGTATCTCCAGGCAT +
Preference number: 4 (lower is better)
Translates to: KTSKSSNSSRHPDRIGADACQKL*YSISRH
Trigger: ATGCCTGGAGATACTGTACCAAAGTTTTTGACATGC...ATCAGCTCCTATTCTGTCTGGATGTCTAGAACTGTTGGAAGATTTTGACGTCTT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000373547.9
ENST00000415905.5
ENST00000451402.5
CDS-3UTR CCA 90 bp AGATTACAGTTCACAAATACAAGAGTCCTAACTTTTCAACCTTTCCAGTTGCAGCCTGATTCCGTTCGATaGTTCGAATTTGATCCAGTG +
Preference number: 4 (lower is better)
Translates to: RLQFTNTRVLTFQPFQLQPDSVR*FEFDPV
Trigger: CACTGGATCAAATTCGAACCATCGAACGGAATCAGG...CTGCAACTGGAAAGGTTGAAAAGTTAGGACTCTTGTATTTGTGAACTGTAATCT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000373547.9
ENST00000415905.5
ENST00000451402.5
CDS-3UTR CCA 90 bp TGCTTCAGATTACAGTTCACAAATACAAGAGTCCTAACTTTTCAACCTTTCCAGCCTGATTCCGTTCGATaGTTCGAATTTGATCCAGTG +
Preference number: 4 (lower is better)
Translates to: CFRLQFTNTRVLTFQPFQPDSVR*FEFDPV
Trigger: CACTGGATCAAATTCGAACCATCGAACGGAATCAGG...CTGGAAAGGTTGAAAAGTTAGGACTCTTGTATTTGTGAACTGTAATCTGAAGCA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000373547.9
ENST00000415905.5
ENST00000451402.5
CDS-3UTR CCA 90 bp CAGAGATGGCAGATAAGGAATGGAGAGAATATTATTGGCACGTGCCCAACTAGTATAGCCCTTATTTATTaGAGGGATCCAAAATATTCC +
Preference number: 4 (lower is better)
Translates to: QRWQIRNGENIIGTCPTSIALIY*RDPKYS
Trigger: GGAATATTTTGGATCCCTCCAATAAATAAGGGCTAT...ACTAGTTGGGCACGTGCCAATAATATTCTCTCCATTCCTTATCTGCCATCTCTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000373547.9
ENST00000415905.5
ENST00000451402.5
CDS-3UTR TCA 90 bp TGCTTCAGATTACAGTTCACAAATACAAGAGTCCTAACTTTTCAACCTTTCCAGGGTGTTGATACTGGCTaGACATTTGACTCTTCTAAG +
Preference number: 4 (lower is better)
Translates to: CFRLQFTNTRVLTFQPFQGVDTG*TFDSSK
Trigger: CTTAGAAGAGTCAAATGTTCAGCCAGTATCAACACC...CTGGAAAGGTTGAAAAGTTAGGACTCTTGTATTTGTGAACTGTAATCTGAAGCA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000373547.9
ENST00000415905.5
ENST00000451402.5
CDS-3UTR TCA 90 bp AGATTACAGTTCACAAATACAAGAGTCCTAACTTTTCAACCTTTCCAGTTGCAGTCCAACAAAGGACAATaGAGTTTACATCTGGGACAG +
Preference number: 4 (lower is better)
Translates to: RLQFTNTRVLTFQPFQLQSNKGQ*SLHLGQ
Trigger: CTGTCCCAGATGTAAACTTCATTGTCCTTTGTTGGA...CTGCAACTGGAAAGGTTGAAAAGTTAGGACTCTTGTATTTGTGAACTGTAATCT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000373547.9
ENST00000415905.5
ENST00000451402.5
CDS-3UTR TCA 90 bp AAGACGTCAAAATCTTCCAACAGTTCTAGACATCCAGACAGAATAGGAGCTGATTTACTTACACAAAGCTaGAATATGGTATCACAGACC +
Preference number: 4 (lower is better)
Translates to: KTSKSSNSSRHPDRIGADLLTQS*NMVSQT
Trigger: GGTCTGTGATACCATATTTCAGCTTTGTGTAAGTAA...ATCAGCTCCTATTCTGTCTGGATGTCTAGAACTGTTGGAAGATTTTGACGTCTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000373547.9
ENST00000415905.5
ENST00000451402.5
CDS-3UTR TCA 90 bp AGATTACAGTTCACAAATACAAGAGTCCTAACTTTTCAACCTTTCCAGTTGCAGGTAACACGAAGCTACTaGCCCAACATTAGTTCAAGT +
Preference number: 4 (lower is better)
Translates to: RLQFTNTRVLTFQPFQLQVTRSY*PNISSS
Trigger: ACTTGAACTAATGTTGGGTCAGTAGCTTCGTGTTAC...CTGCAACTGGAAAGGTTGAAAAGTTAGGACTCTTGTATTTGTGAACTGTAATCT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000373547.9
ENST00000415905.5
ENST00000451402.5
CDS-3UTR TCA 90 bp AGATTACAGTTCACAAATACAAGAGTCCTAACTTTTCAACCTTTCCAGTTGCAGCTGCCCATAAATCTATaGCTTGCAAGTATCTTCCAC +
Preference number: 4 (lower is better)
Translates to: RLQFTNTRVLTFQPFQLQLPINL*LASIFH
Trigger: GTGGAAGATACTTGCAAGTCATAGATTTATGGGCAG...CTGCAACTGGAAAGGTTGAAAAGTTAGGACTCTTGTATTTGTGAACTGTAATCT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000373547.9
ENST00000415905.5
ENST00000451402.5
CDS-3UTR TCA 90 bp TGCTTCAGATTACAGTTCACAAATACAAGAGTCCTAACTTTTCAACCTTTCCAGCTGCCCATAAATCTATaGCTTGCAAGTATCTTCCAC +
Preference number: 4 (lower is better)
Translates to: CFRLQFTNTRVLTFQPFQLPINL*LASIFH
Trigger: GTGGAAGATACTTGCAAGTCATAGATTTATGGGCAG...CTGGAAAGGTTGAAAAGTTAGGACTCTTGTATTTGTGAACTGTAATCTGAAGCA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000373547.9
ENST00000415905.5
ENST00000451402.5
CDS-3UTR TCA 90 bp TGCTTCAGATTACAGTTCACAAATACAAGAGTCCTAACTTTTCAACCTTTCCAGGATGCAGATTGCATATaGGATGTACTGTTGATCCAG +
Preference number: 4 (lower is better)
Translates to: CFRLQFTNTRVLTFQPFQDADCI*DVLLIQ
Trigger: CTGGATCAACAGTACATCTCATATGCAATCTGCATC...CTGGAAAGGTTGAAAAGTTAGGACTCTTGTATTTGTGAACTGTAATCTGAAGCA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000373547.9
ENST00000415905.5
ENST00000451402.5
CDS-3UTR TCA 90 bp AGATTACAGTTCACAAATACAAGAGTCCTAACTTTTCAACCTTTCCAGTTGCAGGATGCAGATTGCATATaGGATGTACTGTTGATCCAG +
Preference number: 4 (lower is better)
Translates to: RLQFTNTRVLTFQPFQLQDADCI*DVLLIQ
Trigger: CTGGATCAACAGTACATCTCATATGCAATCTGCATC...CTGCAACTGGAAAGGTTGAAAAGTTAGGACTCTTGTATTTGTGAACTGTAATCT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000373547.9
ENST00000415905.5
ENST00000451402.5
CDS-3UTR TCA 90 bp TGCTTCAGATTACAGTTCACAAATACAAGAGTCCTAACTTTTCAACCTTTCCAGAGACAGAATAGGAGCTaGTGCAGATTGCATATGAGA +
Preference number: 4 (lower is better)
Translates to: CFRLQFTNTRVLTFQPFQRQNRS*CRLHMR
Trigger: TCTCATATGCAATCTGCATCAGCTCCTATTCTGTCT...CTGGAAAGGTTGAAAAGTTAGGACTCTTGTATTTGTGAACTGTAATCTGAAGCA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000373547.9
ENST00000415905.5
ENST00000451402.5
CDS-3UTR TCA 90 bp AAGACGTCAAAATCTTCCAACAGTTCTAGACATCCAGACAGAATAGGAGCTGATTTTCATCCGAAGAACTaGAGGTGCTTTACAAACATT +
Preference number: 4 (lower is better)
Translates to: KTSKSSNSSRHPDRIGADFHPKN*RCFTNI
Trigger: AATGTTTGTAAAGCACCTTCAGTTCTTCGGATGAAA...ATCAGCTCCTATTCTGTCTGGATGTCTAGAACTGTTGGAAGATTTTGACGTCTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000373547.9
ENST00000415905.5
ENST00000451402.5
CDS-3UTR GCA 90 bp AAGACGTCAAAATCTTCCAACAGTTCTAGACATCCAGACAGAATAGGAGCTGATGAACAGATGCTAAAGTaGTTTATTAATTGGCTGGCT +
Preference number: 4 (lower is better)
Translates to: KTSKSSNSSRHPDRIGADEQMLK*FINWLA
Trigger: AGCCAGCCAATTAATAAAGCACTTTAGCATCTGTTC...ATCAGCTCCTATTCTGTCTGGATGTCTAGAACTGTTGGAAGATTTTGACGTCTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000373547.9
ENST00000415905.5
ENST00000451402.5
CDS-3UTR GCA 90 bp AAGACGTCAAAATCTTCCAACAGTTCTAGACATCCAGACAGAATAGGAGCTGATAATATTATTGGCACGTaGCCAACTAGTGACAAACAA +
Preference number: 4 (lower is better)
Translates to: KTSKSSNSSRHPDRIGADNIIGT*PTSDKQ
Trigger: TTGTTTGTCACTAGTTGGGCACGTGCCAATAATATT...ATCAGCTCCTATTCTGTCTGGATGTCTAGAACTGTTGGAAGATTTTGACGTCTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000373547.9
ENST00000415905.5
ENST00000451402.5
CDS-3UTR GCA 90 bp AAGACGTCAAAATCTTCCAACAGTTCTAGACATCCAGACAGAATAGGAGCTGATGAAAGAGTCCTAATTTaGTTTCACAGTACAGGCATT +
Preference number: 4 (lower is better)
Translates to: KTSKSSNSSRHPDRIGADERVLI*FHSTGI
Trigger: AATGCCTGTACTGTGAAAGCAAATTAGGACTCTTTC...ATCAGCTCCTATTCTGTCTGGATGTCTAGAACTGTTGGAAGATTTTGACGTCTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000373547.9
ENST00000415905.5
ENST00000451402.5
CDS-3UTR CCA 90 bp TGCTTCAGATTACAGTTCACAAATACAAGAGTCCTAACTTTTCAACCTTTCCAGGGAGATAAACCACCATaGACACACAAAATCTGCTCA +
Preference number: 4 (lower is better)
Translates to: CFRLQFTNTRVLTFQPFQGDKPP*THKICS
Trigger: TGAGCAGATTTTGTGTGTCCATGGTGGTTTATCTCC...CTGGAAAGGTTGAAAAGTTAGGACTCTTGTATTTGTGAACTGTAATCTGAAGCA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000373547.9
ENST00000415905.5
ENST00000451402.5
CDS-3UTR TCA 90 bp AGATTACAGTTCACAAATACAAGAGTCCTAACTTTTCAACCTTTCCAGTTGCAGATGCAAGAAGGTAAGTaGAGGTCTCCAAACTATAGT +
Preference number: 4 (lower is better)
Translates to: RLQFTNTRVLTFQPFQLQMQEGK*RSPNYS
Trigger: ACTATAGTTTGGAGACCTTCACTTACCTTCTTGCAT...CTGCAACTGGAAAGGTTGAAAAGTTAGGACTCTTGTATTTGTGAACTGTAATCT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000373547.9
ENST00000415905.5
ENST00000451402.5
CDS-3UTR TCA 90 bp TGCTTCAGATTACAGTTCACAAATACAAGAGTCCTAACTTTTCAACCTTTCCAGATCTGTCTACTCTCATaGTTTCCTCGCAAAAGTGTA +
Preference number: 4 (lower is better)
Translates to: CFRLQFTNTRVLTFQPFQICLLS*FPRKSV
Trigger: TACACTTTTGCGAGGAAATCATGAGAGTAGACAGAT...CTGGAAAGGTTGAAAAGTTAGGACTCTTGTATTTGTGAACTGTAATCTGAAGCA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000373547.9
ENST00000415905.5
ENST00000451402.5
CDS-3UTR TCA 90 bp AGATTACAGTTCACAAATACAAGAGTCCTAACTTTTCAACCTTTCCAGTTGCAGATCTGTCTACTCTCATaGTTTCCTCGCAAAAGTGTA +
Preference number: 4 (lower is better)
Translates to: RLQFTNTRVLTFQPFQLQICLLS*FPRKSV
Trigger: TACACTTTTGCGAGGAAATCATGAGAGTAGACAGAT...CTGCAACTGGAAAGGTTGAAAAGTTAGGACTCTTGTATTTGTGAACTGTAATCT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000373547.9
ENST00000415905.5
ENST00000451402.5
CDS-3UTR TCA 90 bp AGATTACAGTTCACAAATACAAGAGTCCTAACTTTTCAACCTTTCCAGTTGCAGTTAAAGCTGCTACTGTaGGCATGTCAAAAACTTTGG +
Preference number: 4 (lower is better)
Translates to: RLQFTNTRVLTFQPFQLQLKLLL*ACQKLW
Trigger: CCAAAGTTTTTGACATGCTCACAGTAGCAGCTTTAA...CTGCAACTGGAAAGGTTGAAAAGTTAGGACTCTTGTATTTGTGAACTGTAATCT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000373547.9
ENST00000415905.5
ENST00000451402.5
CDS-3UTR TCA 90 bp TGCTTCAGATTACAGTTCACAAATACAAGAGTCCTAACTTTTCAACCTTTCCAGTTGCATATTCAGAACTaGTCATCACAACCCTTTGGA +
Preference number: 4 (lower is better)
Translates to: CFRLQFTNTRVLTFQPFQLHIQN*SSQPFG
Trigger: TCCAAAGGGTTGTGATGATCAGTTCTGAATATGCAA...CTGGAAAGGTTGAAAAGTTAGGACTCTTGTATTTGTGAACTGTAATCTGAAGCA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000373547.9
ENST00000415905.5
ENST00000451402.5
CDS-3UTR GCA 90 bp AGATTACAGTTCACAAATACAAGAGTCCTAACTTTTCAACCTTTCCAGTTGCAGATTAGTTCAAGTGTGTaGAGCAAATGTCTTAGCCAC +
Preference number: 4 (lower is better)
Translates to: RLQFTNTRVLTFQPFQLQISSSV*SKCLSH
Trigger: GTGGCTAAGACATTTGCTGCACACACTTGAACTAAT...CTGCAACTGGAAAGGTTGAAAAGTTAGGACTCTTGTATTTGTGAACTGTAATCT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000373547.9
ENST00000415905.5
ENST00000451402.5
CDS-3UTR GCA 90 bp AGATTACAGTTCACAAATACAAGAGTCCTAACTTTTCAACCTTTCCAGTTGCAGCCACACCAAGTTGTCTaGATCATTAATTTCCAGTGT +
Preference number: 4 (lower is better)
Translates to: RLQFTNTRVLTFQPFQLQPHQVV*IINFQC
Trigger: ACACTGGAAATTAATGATGCAGACAACTTGGTGTGG...CTGCAACTGGAAAGGTTGAAAAGTTAGGACTCTTGTATTTGTGAACTGTAATCT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000373547.9
ENST00000415905.5
ENST00000451402.5
CDS-3UTR CCA 90 bp TGCTTCAGATTACAGTTCACAAATACAAGAGTCCTAACTTTTCAACCTTTCCAGGCATGTCAAAAACTTTaGTACAGTATCTCCAGGCAT +
Preference number: 4 (lower is better)
Translates to: CFRLQFTNTRVLTFQPFQACQKL*YSISRH
Trigger: ATGCCTGGAGATACTGTACCAAAGTTTTTGACATGC...CTGGAAAGGTTGAAAAGTTAGGACTCTTGTATTTGTGAACTGTAATCTGAAGCA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000373547.9
ENST00000415905.5
ENST00000451402.5
CDS-3UTR TCA 90 bp AGATTACAGTTCACAAATACAAGAGTCCTAACTTTTCAACCTTTCCAGTTGCAGTTTGATCCAGTGTTTTaGTATCAGGAGATAAACCAC +
Preference number: 4 (lower is better)
Translates to: RLQFTNTRVLTFQPFQLQFDPVF*YQEINH
Trigger: GTGGTTTATCTCCTGATATCAAAACACTGGATCAAA...CTGCAACTGGAAAGGTTGAAAAGTTAGGACTCTTGTATTTGTGAACTGTAATCT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000373547.9
ENST00000415905.5
ENST00000451402.5
CDS-3UTR TCA 90 bp AGATTACAGTTCACAAATACAAGAGTCCTAACTTTTCAACCTTTCCAGTTGCAGTCGATGGTTCGAATTTaGTCCAGTGTTTTGATATCA +
Preference number: 4 (lower is better)
Translates to: RLQFTNTRVLTFQPFQLQSMVRI*SSVLIS
Trigger: TGATATCAAAACACTGGATCAAATTCGAACCATCGA...CTGCAACTGGAAAGGTTGAAAAGTTAGGACTCTTGTATTTGTGAACTGTAATCT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000373547.9
ENST00000415905.5
ENST00000451402.5
CDS-3UTR TCA 90 bp TGCTTCAGATTACAGTTCACAAATACAAGAGTCCTAACTTTTCAACCTTTCCAGTCGATGGTTCGAATTTaGTCCAGTGTTTTGATATCA +
Preference number: 4 (lower is better)
Translates to: CFRLQFTNTRVLTFQPFQSMVRI*SSVLIS
Trigger: TGATATCAAAACACTGGATCAAATTCGAACCATCGA...CTGGAAAGGTTGAAAAGTTAGGACTCTTGTATTTGTGAACTGTAATCTGAAGCA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000373547.9
ENST00000415905.5
ENST00000451402.5
CDS-3UTR TCA 90 bp AGATTACAGTTCACAAATACAAGAGTCCTAACTTTTCAACCTTTCCAGTTGCAGGATTGTAAACTGGATTaGTCACATTCTACTCAACTG +
Preference number: 4 (lower is better)
Translates to: RLQFTNTRVLTFQPFQLQDCKLD*SHSTQL
Trigger: CAGTTGAGTAGAATGTGATCAATCCAGTTTACAATC...CTGCAACTGGAAAGGTTGAAAAGTTAGGACTCTTGTATTTGTGAACTGTAATCT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000373547.9
ENST00000415905.5
ENST00000451402.5
CDS-3UTR TCA 90 bp AGATTACAGTTCACAAATACAAGAGTCCTAACTTTTCAACCTTTCCAGTTGCAGTTACTTACACAAAGCTaGAATATGGTATCACAGACC +
Preference number: 4 (lower is better)
Translates to: RLQFTNTRVLTFQPFQLQLLTQS*NMVSQT
Trigger: GGTCTGTGATACCATATTTCAGCTTTGTGTAAGTAA...CTGCAACTGGAAAGGTTGAAAAGTTAGGACTCTTGTATTTGTGAACTGTAATCT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000373547.9
ENST00000415905.5
ENST00000451402.5
CDS-3UTR TCA 90 bp TGCTTCAGATTACAGTTCACAAATACAAGAGTCCTAACTTTTCAACCTTTCCAGTTACTTACACAAAGCTaGAATATGGTATCACAGACC +
Preference number: 4 (lower is better)
Translates to: CFRLQFTNTRVLTFQPFQLLTQS*NMVSQT
Trigger: GGTCTGTGATACCATATTTCAGCTTTGTGTAAGTAA...CTGGAAAGGTTGAAAAGTTAGGACTCTTGTATTTGTGAACTGTAATCTGAAGCA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000373547.9
ENST00000415905.5
ENST00000451402.5
CDS-3UTR TCA 90 bp TGCTTCAGATTACAGTTCACAAATACAAGAGTCCTAACTTTTCAACCTTTCCAGAAGCCATTATTCAGTTaGAGAGAAATCAGGCAAAAC +
Preference number: 4 (lower is better)
Translates to: CFRLQFTNTRVLTFQPFQKPLFS*REIRQN
Trigger: GTTTTGCCTGATTTCTCTTCAACTGAATAATGGCTT...CTGGAAAGGTTGAAAAGTTAGGACTCTTGTATTTGTGAACTGTAATCTGAAGCA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000373547.9
ENST00000415905.5
ENST00000451402.5
CDS-3UTR TCA 90 bp TGCTTCAGATTACAGTTCACAAATACAAGAGTCCTAACTTTTCAACCTTTCCAGTTTCATCCGAAGAACTaGAGGTGCTTTACAAACATT +
Preference number: 4 (lower is better)
Translates to: CFRLQFTNTRVLTFQPFQFHPKN*RCFTNI
Trigger: AATGTTTGTAAAGCACCTTCAGTTCTTCGGATGAAA...CTGGAAAGGTTGAAAAGTTAGGACTCTTGTATTTGTGAACTGTAATCTGAAGCA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000373547.9
ENST00000415905.5
ENST00000451402.5
CDS-3UTR GCA 90 bp AGATTACAGTTCACAAATACAAGAGTCCTAACTTTTCAACCTTTCCAGTTGCAGTGGACACACAAAATCTaGTCATCTATTAAAGCTGCT +
Preference number: 4 (lower is better)
Translates to: RLQFTNTRVLTFQPFQLQWTHKI*SSIKAA
Trigger: AGCAGCTTTAATAGATGAGCAGATTTTGTGTGTCCA...CTGCAACTGGAAAGGTTGAAAAGTTAGGACTCTTGTATTTGTGAACTGTAATCT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000373547.9
ENST00000415905.5
ENST00000451402.5
CDS-3UTR GCA 90 bp TGCTTCAGATTACAGTTCACAAATACAAGAGTCCTAACTTTTCAACCTTTCCAGGAACAGATGCTAAAGTaGTTTATTAATTGGCTGGCT +
Preference number: 4 (lower is better)
Translates to: CFRLQFTNTRVLTFQPFQEQMLK*FINWLA
Trigger: AGCCAGCCAATTAATAAAGCACTTTAGCATCTGTTC...CTGGAAAGGTTGAAAAGTTAGGACTCTTGTATTTGTGAACTGTAATCTGAAGCA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000373547.9
ENST00000415905.5
ENST00000451402.5
CDS-3UTR GCA 90 bp AGATTACAGTTCACAAATACAAGAGTCCTAACTTTTCAACCTTTCCAGTTGCAGAATATTATTGGCACGTaGCCAACTAGTGACAAACAA +
Preference number: 4 (lower is better)
Translates to: RLQFTNTRVLTFQPFQLQNIIGT*PTSDKQ
Trigger: TTGTTTGTCACTAGTTGGGCACGTGCCAATAATATT...CTGCAACTGGAAAGGTTGAAAAGTTAGGACTCTTGTATTTGTGAACTGTAATCT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000373547.9
ENST00000415905.5
ENST00000451402.5
CDS-3UTR GCA 90 bp AGATTACAGTTCACAAATACAAGAGTCCTAACTTTTCAACCTTTCCAGTTGCAGGAAAGAGTCCTAATTTaGTTTCACAGTACAGGCATT +
Preference number: 4 (lower is better)
Translates to: RLQFTNTRVLTFQPFQLQERVLI*FHSTGI
Trigger: AATGCCTGTACTGTGAAAGCAAATTAGGACTCTTTC...CTGCAACTGGAAAGGTTGAAAAGTTAGGACTCTTGTATTTGTGAACTGTAATCT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000373547.9
ENST00000415905.5
ENST00000451402.5
CDS-3UTR GCA 90 bp TGCTTCAGATTACAGTTCACAAATACAAGAGTCCTAACTTTTCAACCTTTCCAGGAAAGAGTCCTAATTTaGTTTCACAGTACAGGCATT +
Preference number: 4 (lower is better)
Translates to: CFRLQFTNTRVLTFQPFQERVLI*FHSTGI
Trigger: AATGCCTGTACTGTGAAAGCAAATTAGGACTCTTTC...CTGGAAAGGTTGAAAAGTTAGGACTCTTGTATTTGTGAACTGTAATCTGAAGCA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000373547.9
ENST00000415905.5
ENST00000451402.5
CDS-3UTR CCA 90 bp TGCTTCAGATTACAGTTCACAAATACAAGAGTCCTAACTTTTCAACCTTTCCAGGCTTTATTAATTGGCTaGCTTCACAAGTATTTCCTG +
Preference number: 4 (lower is better)
Translates to: CFRLQFTNTRVLTFQPFQALLIG*LHKYFL
Trigger: CAGGAAATACTTGTGAAGCCAGCCAATTAATAAAGC...CTGGAAAGGTTGAAAAGTTAGGACTCTTGTATTTGTGAACTGTAATCTGAAGCA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000373547.9
ENST00000415905.5
ENST00000451402.5
CDS-3UTR CCA 90 bp TGCTTCAGATTACAGTTCACAAATACAAGAGTCCTAACTTTTCAACCTTTCCAGAGATACACAATTTCCTaGAAGCTGATGGAAAGTGAT +
Preference number: 4 (lower is better)
Translates to: CFRLQFTNTRVLTFQPFQRYTIS*KLMESD
Trigger: ATCACTTTCCATCAGCTTCCAGGAAATTGTGTATCT...CTGGAAAGGTTGAAAAGTTAGGACTCTTGTATTTGTGAACTGTAATCTGAAGCA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000373547.9
ENST00000415905.5
ENST00000451402.5
CDS-3UTR GCA 90 bp TGCTTCAGATTACAGTTCACAAATACAAGAGTCCTAACTTTTCAACCTTTCCAGCATAAATCTATGACTTaGAAGTATCTTCCACCACAT +
Preference number: 4 (lower is better)
Translates to: CFRLQFTNTRVLTFQPFQHKSMT*KYLPPH
Trigger: ATGTGGTGGAAGATACTTGCAAGTCATAGATTTATG...CTGGAAAGGTTGAAAAGTTAGGACTCTTGTATTTGTGAACTGTAATCTGAAGCA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000373547.9
ENST00000415905.5
ENST00000451402.5
CDS-3UTR CCA 90 bp TGCTTCAGATTACAGTTCACAAATACAAGAGTCCTAACTTTTCAACCTTTCCAGCTTGTCCTTATTAAGTaGACAGTTGCATATTCAGAA +
Preference number: 4 (lower is better)
Translates to: CFRLQFTNTRVLTFQPFQLVLIK*TVAYSE
Trigger: TTCTGAATATGCAACTGTCCACTTAATAAGGACAAG...CTGGAAAGGTTGAAAAGTTAGGACTCTTGTATTTGTGAACTGTAATCTGAAGCA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000373547.9
ENST00000415905.5
ENST00000451402.5
CDS-3UTR CCA 90 bp AGATTACAGTTCACAAATACAAGAGTCCTAACTTTTCAACCTTTCCAGTTGCAGATAGCCCTTATTTATTaGAGGGATCCAAAATATTCC +
Preference number: 4 (lower is better)
Translates to: RLQFTNTRVLTFQPFQLQIALIY*RDPKYS
Trigger: GGAATATTTTGGATCCCTCCAATAAATAAGGGCTAT...CTGCAACTGGAAAGGTTGAAAAGTTAGGACTCTTGTATTTGTGAACTGTAATCT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000373547.9
ENST00000415905.5
ENST00000451402.5
CDS-3UTR CCA 90 bp TGCTTCAGATTACAGTTCACAAATACAAGAGTCCTAACTTTTCAACCTTTCCAGATAGCCCTTATTTATTaGAGGGATCCAAAATATTCC +
Preference number: 4 (lower is better)
Translates to: CFRLQFTNTRVLTFQPFQIALIY*RDPKYS
Trigger: GGAATATTTTGGATCCCTCCAATAAATAAGGGCTAT...CTGGAAAGGTTGAAAAGTTAGGACTCTTGTATTTGTGAACTGTAATCTGAAGCA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000373547.9
ENST00000415905.5
ENST00000451402.5
CDS CCA 90 bp GAGGCCGAAGCCGGAACTTTCCCTGCGTCACGTCCGGCCCGTGAGTaGCGCCTGCGCAGCGCCGTTAAAGCGCGACCCGTTTCTCCCCGC +
Preference number: 5 (lower is better)
Translates to: EAEAGTFPASRPARE*RLRSAVKARPVSPR
Trigger: GCGGGGAGAAACGGGTCGCGCTTTAACGGCGCTGCGCAGGCGCCACTCACGGGCCGGACGTGACGCAGGGAAAGTTCCGGCTTCGGCCTC
70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000415905.5
ENST00000451402.5
CDS GCA 90 bp AAGCCGGAACTTTCCCTGCGTCACGTCCGGCCCGTGAGTGGCGCCTaGGCAGCGCCGTTAAAGCGCGACCCGTTTCTCCCCGCTACGTCG +
Preference number: 5 (lower is better)
Translates to: KPELSLRHVRPVSGA*AAPLKRDPFLPATS
Trigger: CGACGTAGCGGGGAGAAACGGGTCGCGCTTTAACGGCGCTGCGCAGGCGCCACTCACGGGCCGGACGTGACGCAGGGAAAGTTCCGGCTT
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000415905.5
ENST00000451402.5
CDS GCA 90 bp AAACGTAGTCACATAGCCGCTTCAGGTCGTTCTCTGGCAGGTACTTaGACAGCCGCGCTATTTCCACATACTTGTCCAGGTCTAGCGGCG +
Preference number: 5 (lower is better)
Translates to: KRSHIAASGRSLAGT*TAALFPHTCPGLAA
Trigger: CGCCGCTAGACCTGGACAAGTATGTGGAAATAGCGCGGCTGTGCAAGTACCTGCCAGAGAACGACCTGAAGCGGCTATGTGACTACGTTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000373547.9
ENST00000415905.5
CDS CCA 90 bp CGCAGAAGCCTAATGCATCATAGCCCAAAACTTCAGGTCGTTCTCTaGCAGGTACTTGCACAGCCGCGCTATTTCCACATACTTGTCCAG +
Preference number: 5 (lower is better)
Translates to: RRSLMHHSPKLQVVL*QVLAQPRYFHILVQ
Trigger: CTGGACAAGTATGTGGAAATAGCGCGGCTGTGCAAGTACCTGCCAGAGAACGACCTGAAGTTTTGGGCTATGATGCATTAGGCTTCTGCG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000456642.1
CDS TCA 90 bp TGCTCCTCGGGGACTGATAGCCCAGGTATCCACATCTTCAGGATCTaGCCAAACCAGATCACAAAATGCTCCTTTATGAGGAATTTCCTG +
Preference number: 5 (lower is better)
Translates to: CSSGTDSPGIHIFRI*PNQITKCSFMRNFL
Trigger: CAGGAAATTCCTCATAAAGGAGCATTTTGTGATCTGGTTTGGTCAGATCCTGAAGATGTGGATACCTGGGCTATCAGTCCCCGAGGAGCA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000373547.9
ENST00000415905.5
ENST00000451402.5
CDS GCA 90 bp GATATGAACAAACTCATTTGTGACCTTTGCTCCAAAAAGCCAACCTaGTCCTCGGGGACTGATAGCCCAGGTATCCACATCTTCAGGATC +
Preference number: 5 (lower is better)
Translates to: DMNKLICDLCSKKPT*SSGTDSPGIHIFRI
Trigger: GATCCTGAAGATGTGGATACCTGGGCTATCAGTCCCCGAGGAGCAGGTTGGCTTTTTGGAGCAAAGGTCACAAATGAGTTTGTTCATATC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000373547.9
ENST00000415905.5
ENST00000451402.5
CDS-3UTR CAA 90 bp AAGACGTCAAAATCTTCCAACAGTTCTAGACATCCAGACAGAATAGGAGCTGATGCTATTTCCACATACTaGTCCAGGTCTAGCGGCGCC +
Preference number: 5 (lower is better)
Translates to: KTSKSSNSSRHPDRIGADAISTY*SRSSGA
Trigger: GGCGCCGCTAGACCTGGACAAGTATGTGGAAATAGC...ATCAGCTCCTATTCTGTCTGGATGTCTAGAACTGTTGGAAGATTTTGACGTCTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000373547.9
ENST00000415905.5
ENST00000451402.5
CDS-3UTR CAA 90 bp AAGACGTCAAAATCTTCCAACAGTTCTAGACATCCAGACAGAATAGGAGCTGATTTCTCTGGCAGGTACTaGCACAGCCGCGCTATTTCC +
Preference number: 5 (lower is better)
Translates to: KTSKSSNSSRHPDRIGADFSGRY*HSRAIS
Trigger: GGAAATAGCGCGGCTGTGCAAGTACCTGCCAGAGAA...ATCAGCTCCTATTCTGTCTGGATGTCTAGAACTGTTGGAAGATTTTGACGTCTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000373547.9
ENST00000415905.5
ENST00000451402.5
CDS-3UTR CAA 90 bp AGATTACAGTTCACAAATACAAGAGTCCTAACTTTTCAACCTTTCCAGTTGCAGGCTATTTCCACATACTaGTCCAGGTCTAGCGGCGCC +
Preference number: 5 (lower is better)
Translates to: RLQFTNTRVLTFQPFQLQAISTY*SRSSGA
Trigger: GGCGCCGCTAGACCTGGACAAGTATGTGGAAATAGC...CTGCAACTGGAAAGGTTGAAAAGTTAGGACTCTTGTATTTGTGAACTGTAATCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000373547.9
ENST00000415905.5
ENST00000451402.5
CDS-3UTR CAA 90 bp TGCTTCAGATTACAGTTCACAAATACAAGAGTCCTAACTTTTCAACCTTTCCAGTTCTCTGGCAGGTACTaGCACAGCCGCGCTATTTCC +
Preference number: 5 (lower is better)
Translates to: CFRLQFTNTRVLTFQPFQFSGRY*HSRAIS
Trigger: GGAAATAGCGCGGCTGTGCAAGTACCTGCCAGAGAA...CTGGAAAGGTTGAAAAGTTAGGACTCTTGTATTTGTGAACTGTAATCTGAAGCA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000373547.9
ENST00000415905.5
ENST00000451402.5
CDS-3UTR CAA 90 bp AGATTACAGTTCACAAATACAAGAGTCCTAACTTTTCAACCTTTCCAGTTGCAGTTCTCTGGCAGGTACTaGCACAGCCGCGCTATTTCC +
Preference number: 5 (lower is better)
Translates to: RLQFTNTRVLTFQPFQLQFSGRY*HSRAIS
Trigger: GGAAATAGCGCGGCTGTGCAAGTACCTGCCAGAGAA...CTGCAACTGGAAAGGTTGAAAAGTTAGGACTCTTGTATTTGTGAACTGTAATCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000373547.9
ENST00000415905.5
ENST00000451402.5
CDS-3UTR CAA 90 bp CAGAGATGGCAGATAAGGAATGGAGAGAATATTATTGGCACGTGCCCAACTAGTATGGAGAGAATATTATaGGCACGTGCCCAACTAGTG +
Preference number: 5 (lower is better)
Translates to: QRWQIRNGENIIGTCPTSMERIL*ARAQLV
Trigger: CACTAGTTGGGCACGTGCCAATAATATTCTCTCCAT...ACTAGTTGGGCACGTGCCAATAATATTCTCTCCATTCCTTATCTGCCATCTCTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000373547.9
ENST00000415905.5
ENST00000451402.5
CDS-3UTR CAA 90 bp CAGAGATGGCAGATAAGGAATGGAGAGAATATTATTGGCACGTGCCCAACTAGTATACTGGCTGAACATTaGACTCTTCTAAGAGGAGGT +
Preference number: 5 (lower is better)
Translates to: QRWQIRNGENIIGTCPTSILAEH*TLLRGG
Trigger: ACCTCCTCTTAGAAGAGTCAAATGTTCAGCCAGTAT...ACTAGTTGGGCACGTGCCAATAATATTCTCTCCATTCCTTATCTGCCATCTCTG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000373547.9
ENST00000415905.5
ENST00000451402.5
CDS-3UTR CAA 90 bp CAGAGATGGCAGATAAGGAATGGAGAGAATATTATTGGCACGTGCCCAACTAGTACACTGTTACTGGTGTaGATACTGGCTGAACATTTG +
Preference number: 5 (lower is better)
Translates to: QRWQIRNGENIIGTCPTSTLLLV*ILAEHL
Trigger: CAAATGTTCAGCCAGTATCAACACCAGTAACAGTGT...ACTAGTTGGGCACGTGCCAATAATATTCTCTCCATTCCTTATCTGCCATCTCTG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000373547.9
ENST00000415905.5
ENST00000451402.5
CDS-3UTR CAA 90 bp CAGAGATGGCAGATAAGGAATGGAGAGAATATTATTGGCACGTGCCCAACTAGTAGCATGTCAAAAACTTaGGTACAGTATCTCCAGGCA +
Preference number: 5 (lower is better)
Translates to: QRWQIRNGENIIGTCPTSSMSKT*VQYLQA
Trigger: TGCCTGGAGATACTGTACCAAAGTTTTTGACATGCT...ACTAGTTGGGCACGTGCCAATAATATTCTCTCCATTCCTTATCTGCCATCTCTG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000373547.9
ENST00000415905.5
ENST00000451402.5
CDS-3UTR CAA 90 bp TGCTTCAGATTACAGTTCACAAATACAAGAGTCCTAACTTTTCAACCTTTCCAGCATAACTTGAGGCATTaGGAGTCCATCGTGCCCACT +
Preference number: 5 (lower is better)
Translates to: CFRLQFTNTRVLTFQPFQHNLRH*ESIVPT
Trigger: AGTGGGCACGATGGACTCCAAATGCCTCAAGTTATG...CTGGAAAGGTTGAAAAGTTAGGACTCTTGTATTTGTGAACTGTAATCTGAAGCA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000373547.9
ENST00000415905.5
ENST00000451402.5
CDS-3UTR CAA 90 bp CAGAGATGGCAGATAAGGAATGGAGAGAATATTATTGGCACGTGCCCAACTAGTGAGATACTGGAATACTaGTCCTTATTAAGTGGACAG +
Preference number: 5 (lower is better)
Translates to: QRWQIRNGENIIGTCPTSEILEY*SLLSGQ
Trigger: CTGTCCACTTAATAAGGACAAGTATTCCAGTATCTC...ACTAGTTGGGCACGTGCCAATAATATTCTCTCCATTCCTTATCTGCCATCTCTG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000373547.9
ENST00000415905.5
ENST00000451402.5
CDS-3UTR CAA 90 bp CAGAGATGGCAGATAAGGAATGGAGAGAATATTATTGGCACGTGCCCAACTAGTAGAAAGAGTCCTAATTaGCTTTCACAGTACAGGCAT +
Preference number: 5 (lower is better)
Translates to: QRWQIRNGENIIGTCPTSRKSPN*LSQYRH
Trigger: ATGCCTGTACTGTGAAAGCAAATTAGGACTCTTTCT...ACTAGTTGGGCACGTGCCAATAATATTCTCTCCATTCCTTATCTGCCATCTCTG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000373547.9
ENST00000415905.5
ENST00000451402.5
CDS-3UTR CAA 90 bp AAGACGTCAAAATCTTCCAACAGTTCTAGACATCCAGACAGAATAGGAGCTGATATACTGGCTGAACATTaGACTCTTCTAAGAGGAGGT +
Preference number: 5 (lower is better)
Translates to: KTSKSSNSSRHPDRIGADILAEH*TLLRGG
Trigger: ACCTCCTCTTAGAAGAGTCAAATGTTCAGCCAGTAT...ATCAGCTCCTATTCTGTCTGGATGTCTAGAACTGTTGGAAGATTTTGACGTCTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000373547.9
ENST00000415905.5
ENST00000451402.5
CDS-3UTR CAA 90 bp AAGACGTCAAAATCTTCCAACAGTTCTAGACATCCAGACAGAATAGGAGCTGATACAGGTATACATAACTaGAGGCATTTGGAGTCCATC +
Preference number: 5 (lower is better)
Translates to: KTSKSSNSSRHPDRIGADTGIHN*RHLESI
Trigger: GATGGACTCCAAATGCCTCAAGTTATGTATACCTGT...ATCAGCTCCTATTCTGTCTGGATGTCTAGAACTGTTGGAAGATTTTGACGTCTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000373547.9
ENST00000415905.5
ENST00000451402.5
CDS-3UTR CAA 90 bp AGATTACAGTTCACAAATACAAGAGTCCTAACTTTTCAACCTTTCCAGTTGCAGATGGAGAGAATATTATaGGCACGTGCCCAACTAGTG +
Preference number: 5 (lower is better)
Translates to: RLQFTNTRVLTFQPFQLQMERIL*ARAQLV
Trigger: CACTAGTTGGGCACGTGCCAATAATATTCTCTCCAT...CTGCAACTGGAAAGGTTGAAAAGTTAGGACTCTTGTATTTGTGAACTGTAATCT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000373547.9
ENST00000415905.5
ENST00000451402.5
CDS-3UTR CAA 90 bp AAGACGTCAAAATCTTCCAACAGTTCTAGACATCCAGACAGAATAGGAGCTGATAGAAAGAGTCCTAATTaGCTTTCACAGTACAGGCAT +
Preference number: 5 (lower is better)
Translates to: KTSKSSNSSRHPDRIGADRKSPN*LSQYRH
Trigger: ATGCCTGTACTGTGAAAGCAAATTAGGACTCTTTCT...ATCAGCTCCTATTCTGTCTGGATGTCTAGAACTGTTGGAAGATTTTGACGTCTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000373547.9
ENST00000415905.5
ENST00000451402.5
CDS-3UTR CAA 90 bp AGATTACAGTTCACAAATACAAGAGTCCTAACTTTTCAACCTTTCCAGTTGCAGATACTGGCTGAACATTaGACTCTTCTAAGAGGAGGT +
Preference number: 5 (lower is better)
Translates to: RLQFTNTRVLTFQPFQLQILAEH*TLLRGG
Trigger: ACCTCCTCTTAGAAGAGTCAAATGTTCAGCCAGTAT...CTGCAACTGGAAAGGTTGAAAAGTTAGGACTCTTGTATTTGTGAACTGTAATCT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000373547.9
ENST00000415905.5
ENST00000451402.5
CDS-3UTR CAA 90 bp AGATTACAGTTCACAAATACAAGAGTCCTAACTTTTCAACCTTTCCAGTTGCAGACACTGTTACTGGTGTaGATACTGGCTGAACATTTG +
Preference number: 5 (lower is better)
Translates to: RLQFTNTRVLTFQPFQLQTLLLV*ILAEHL
Trigger: CAAATGTTCAGCCAGTATCAACACCAGTAACAGTGT...CTGCAACTGGAAAGGTTGAAAAGTTAGGACTCTTGTATTTGTGAACTGTAATCT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000373547.9
ENST00000415905.5
ENST00000451402.5
CDS-3UTR CAA 90 bp AGATTACAGTTCACAAATACAAGAGTCCTAACTTTTCAACCTTTCCAGTTGCAGAGCATGTCAAAAACTTaGGTACAGTATCTCCAGGCA +
Preference number: 5 (lower is better)
Translates to: RLQFTNTRVLTFQPFQLQSMSKT*VQYLQA
Trigger: TGCCTGGAGATACTGTACCAAAGTTTTTGACATGCT...CTGCAACTGGAAAGGTTGAAAAGTTAGGACTCTTGTATTTGTGAACTGTAATCT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000373547.9
ENST00000415905.5
ENST00000451402.5
CDS-3UTR CAA 90 bp TGCTTCAGATTACAGTTCACAAATACAAGAGTCCTAACTTTTCAACCTTTCCAGAGCATGTCAAAAACTTaGGTACAGTATCTCCAGGCA +
Preference number: 5 (lower is better)
Translates to: CFRLQFTNTRVLTFQPFQSMSKT*VQYLQA
Trigger: TGCCTGGAGATACTGTACCAAAGTTTTTGACATGCT...CTGGAAAGGTTGAAAAGTTAGGACTCTTGTATTTGTGAACTGTAATCTGAAGCA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000373547.9
ENST00000415905.5
ENST00000451402.5
CDS-3UTR CAA 90 bp AAGACGTCAAAATCTTCCAACAGTTCTAGACATCCAGACAGAATAGGAGCTGATTTCGATGGTTCGAATTaGATCCAGTGTTTTGATATC +
Preference number: 5 (lower is better)
Translates to: KTSKSSNSSRHPDRIGADFDGSN*IQCFDI
Trigger: GATATCAAAACACTGGATCAAATTCGAACCATCGAA...ATCAGCTCCTATTCTGTCTGGATGTCTAGAACTGTTGGAAGATTTTGACGTCTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000373547.9
ENST00000415905.5
ENST00000451402.5
CDS-3UTR CAA 90 bp AGATTACAGTTCACAAATACAAGAGTCCTAACTTTTCAACCTTTCCAGTTGCAGAAAGACCACACCAAGTaGTCTGCATCATTAATTTCC +
Preference number: 5 (lower is better)
Translates to: RLQFTNTRVLTFQPFQLQKDHTK*SASLIS
Trigger: GGAAATTAATGATGCAGACAACTTGGTGTGGTCTTT...CTGCAACTGGAAAGGTTGAAAAGTTAGGACTCTTGTATTTGTGAACTGTAATCT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000373547.9
ENST00000415905.5
ENST00000451402.5
CDS-3UTR CAA 90 bp TGCTTCAGATTACAGTTCACAAATACAAGAGTCCTAACTTTTCAACCTTTCCAGAGAAAGAGTCCTAATTaGCTTTCACAGTACAGGCAT +
Preference number: 5 (lower is better)
Translates to: CFRLQFTNTRVLTFQPFQRKSPN*LSQYRH
Trigger: ATGCCTGTACTGTGAAAGCAAATTAGGACTCTTTCT...CTGGAAAGGTTGAAAAGTTAGGACTCTTGTATTTGTGAACTGTAATCTGAAGCA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000373547.9
ENST00000415905.5
ENST00000451402.5
CDS-3UTR CAA 90 bp TGCTTCAGATTACAGTTCACAAATACAAGAGTCCTAACTTTTCAACCTTTCCAGTTCGATGGTTCGAATTaGATCCAGTGTTTTGATATC +
Preference number: 5 (lower is better)
Translates to: CFRLQFTNTRVLTFQPFQFDGSN*IQCFDI
Trigger: GATATCAAAACACTGGATCAAATTCGAACCATCGAA...CTGGAAAGGTTGAAAAGTTAGGACTCTTGTATTTGTGAACTGTAATCTGAAGCA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000373547.9
ENST00000415905.5
ENST00000451402.5
CDS GCA 72 bp CTTTCCCTGCGTCACGTCCGGCCCGTGAGTGGCGCCTaGGCAGCGCCGTTAAAGCGCGACCCGTTTCTCCCC +
Preference number: 6 (lower is better)
Translates to: LSLRHVRPVSGA*AAPLKRDPFLP
Trigger: GGGGAGAAACGGGTCGCGCTTTAACGGCGCTGCGCAGGCGCCACTCACGGGCCGGACGTGACGCAGGGAAAG
69% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000415905.5
ENST00000451402.5
CDS CAA 90 bp AGCCCGCAAATAGGGCTCACCTTCAGGTCGTTCTCTGGCAGGTACTaGCACAGCCGCGCTATTTCCACATACTTGTCCAGGTCTAGCGGC +
Preference number: 6 (lower is better)
Translates to: SPQIGLTFRSFSGRY*HSRAISTYLSRSSG
Trigger: GCCGCTAGACCTGGACAAGTATGTGGAAATAGCGCGGCTGTGCAAGTACCTGCCAGAGAACGACCTGAAGGTGAGCCCTATTTGCGGGCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000451402.5
CDS CCA 72 bp GAGCCCGCAAATAGGGCTCACCTTCAGGTCGTTCTCTaGCAGGTACTTGCACAGCCGCGCTATTTCCACATA +
Preference number: 6 (lower is better)
Translates to: EPANRAHLQVVL*QVLAQPRYFHI
Trigger: TATGTGGAAATAGCGCGGCTGTGCAAGTACCTGCCAGAGAACGACCTGAAGGTGAGCCCTATTTGCGGGCTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000451402.5
CDS GCA 72 bp CACATAGCCGCTTCAGGTCGTTCTCTGGCAGGTACTTaGACAGCCGCGCTATTTCCACATACTTGTCCAGGT +
Preference number: 6 (lower is better)
Translates to: HIAASGRSLAGT*TAALFPHTCPG
Trigger: ACCTGGACAAGTATGTGGAAATAGCGCGGCTGTGCAAGTACCTGCCAGAGAACGACCTGAAGCGGCTATGTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000373547.9
ENST00000415905.5
CDS CAA 72 bp TCACATAGCCGCTTCAGGTCGTTCTCTGGCAGGTACTaGCACAGCCGCGCTATTTCCACATACTTGTCCAGG +
Preference number: 6 (lower is better)
Translates to: SHSRFRSFSGRY*HSRAISTYLSR
Trigger: CCTGGACAAGTATGTGGAAATAGCGCGGCTGTGCAAGTACCTGCCAGAGAACGACCTGAAGCGGCTATGTGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000373547.9
ENST00000415905.5
CDS CAA 72 bp ATAGGGCTCACCTTCAGGTCGTTCTCTGGCAGGTACTaGCACAGCCGCGCTATTTCCACATACTTGTCCAGG +
Preference number: 6 (lower is better)
Translates to: IGLTFRSFSGRY*HSRAISTYLSR
Trigger: CCTGGACAAGTATGTGGAAATAGCGCGGCTGTGCAAGTACCTGCCAGAGAACGACCTGAAGGTGAGCCCTAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000451402.5
CDS CAA 90 bp TCGTTCTCTGGCAGGTACTTGCACAGCCGCGCTATTTCCACATACTaGTCCAGGTCTAGCGGCGCCATTTTAAGAATAACAAGCCGCGGC +
Preference number: 6 (lower is better)
Translates to: SFSGRYLHSRAISTY*SRSSGAILRITSRG
Trigger: GCCGCGGCTTGTTATTCTTAAAATGGCGCCGCTAGACCTGGACAAGTATGTGGAAATAGCGCGGCTGTGCAAGTACCTGCCAGAGAACGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000373547.9
ENST00000415905.5
ENST00000451402.5
ENST00000456642.1
CDS CAA 72 bp ATAGCCCAAAACTTCAGGTCGTTCTCTGGCAGGTACTaGCACAGCCGCGCTATTTCCACATACTTGTCCAGG +
Preference number: 6 (lower is better)
Translates to: IAQNFRSFSGRY*HSRAISTYLSR
Trigger: CCTGGACAAGTATGTGGAAATAGCGCGGCTGTGCAAGTACCTGCCAGAGAACGACCTGAAGTTTTGGGCTAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000456642.1
CDS GCA 72 bp AAACTCATTTGTGACCTTTGCTCCAAAAAGCCAACCTaGTCCTCGGGGACTGATAGCCCAGGTATCCACATC +
Preference number: 6 (lower is better)
Translates to: KLICDLCSKKPT*SSGTDSPGIHI
Trigger: GATGTGGATACCTGGGCTATCAGTCCCCGAGGAGCAGGTTGGCTTTTTGGAGCAAAGGTCACAAATGAGTTT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000373547.9
ENST00000415905.5
ENST00000451402.5
CDS CAA 72 bp GGCAGGTACTTGCACAGCCGCGCTATTTCCACATACTaGTCCAGGTCTAGCGGCGCCATTTTAAGAATAACA +
Preference number: 6 (lower is better)
Translates to: GRYLHSRAISTY*SRSSGAILRIT
Trigger: TGTTATTCTTAAAATGGCGCCGCTAGACCTGGACAAGTATGTGGAAATAGCGCGGCTGTGCAAGTACCTGCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000373547.9
ENST00000415905.5
ENST00000451402.5
ENST00000456642.1
CDS CAA 72 bp CCTGTCCATGGATATCTCCACACACTGTTACTGGTGTaGATACTGGCTGAACATTTGACTCTTCTAAGAGGA +
Preference number: 6 (lower is better)
Translates to: PVHGYLHTLLLV*ILAEHLTLLRG
Trigger: TCCTCTTAGAAGAGTCAAATGTTCAGCCAGTATCAACACCAGTAACAGTGTGTGGAGATATCCATGGACAGG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000415905.5
CDS CAA 90 bp CAAAATCACCCTGTCCATGGATATCTCCACACACTGTTACTGGTGTaGATACTGGCTGAACATTTGACTCTTCTAAGAGGAGGTCACAAA +
Preference number: 6 (lower is better)
Translates to: QNHPVHGYLHTLLLV*ILAEHLTLLRGGHK
Trigger: TTTGTGACCTCCTCTTAGAAGAGTCAAATGTTCAGCCAGTATCAACACCAGTAACAGTGTGTGGAGATATCCATGGACAGGGTGATTTTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000415905.5
CDS TCA 72 bp ATATCTCCACACACTGTTACTGGTGTTGATACTGGCTaGACATTTGACTCTTCTAAGAGGAGGTCACAAACG +
Preference number: 6 (lower is better)
Translates to: ISPHTVTGVDTG*TFDSSKRRSQT
Trigger: CGTTTGTGACCTCCTCTTAGAAGAGTCAAATGTTCAGCCAGTATCAACACCAGTAACAGTGTGTGGAGATAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000373547.9
ENST00000415905.5
ENST00000451402.5
ENST00000456642.1
CDS CAA 72 bp ACTGTCCATGGATATCTCCACACACTGTTACTGGTGTaGATACTGGCTGAACATTTGACTCTTCTAAGAGGA +
Preference number: 6 (lower is better)
Translates to: TVHGYLHTLLLV*ILAEHLTLLRG
Trigger: TCCTCTTAGAAGAGTCAAATGTTCAGCCAGTATCAACACCAGTAACAGTGTGTGGAGATATCCATGGACAGT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000373547.9
ENST00000451402.5
ENST00000456642.1
CDS TCA 72 bp ATATGTAGTTTGTGTCAGGAACCTGACCTCCAGTTCTaGACAGTTCACAAAGGTCATAAAACTGTCCATGGA +
Preference number: 6 (lower is better)
Translates to: ICSLCQEPDLQF*TVHKGHKTVHG
Trigger: TCCATGGACAGTTTTATGACCTTTGTGAACTGTTCAGAACTGGAGGTCAGGTTCCTGACACAAACTACATAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000373547.9
ENST00000451402.5
ENST00000456642.1
CDS CAA 72 bp AGTCACATAGCCGCATTTGACCCAGCAACTGTAGTCTaGGCAATAAAAACATGTTCAAAATCTGTATATAAA +
Preference number: 6 (lower is better)
Translates to: SHIAAFDPATVV*AIKTCSKSVYK
Trigger: TTTATATACAGATTTTGAACATGTTTTTATTGCCAAGACTACAGTTGCTGGGTCAAATGCGGCTATGTGACT
36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000456642.1