Pregenerated sensors for PPP1R42 (Homo sapiens)
Ensembl gene IDs: ENSG00000178125Ensembl transcript IDs: ENST00000324682.5, ENST00000517834.5, ENST00000518588.2, ENST00000519919.5, ENST00000519987.5, ENST00000520633.1, ENST00000521040.5, ENST00000521410.5, ENST00000521581.5, ENST00000521998.5, ENST00000522331.5, ENST00000522909.5, ENST00000523545.1
Found 18 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CAA 90 bp | TTTCTTCTGGGTTATGGAAGAGGTGAGGTTCATGCACATCATTTTTaGTCAGCAAGCTTTCAGATTGCTTCAAAGAGAGATTCCCCATCT | + |
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Preference number: 2 (lower is better) Translates to: FLLGYGRGEVHAHHF*SASFQIASKRDSPS Trigger: AGATGGGGAATCTCTCTTTGAAGCAATCTGAAAGCTTGCTGACAAAAAATGATGTGCATGAACCTCACCTCTTCCATAACCCAGAAGAAA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000522909.5 |
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| CDS TCA 90 bp | CAACATGAAGCTCTCTTAGTTCTCCTAATCCTTCTAAACCTTCTATaGCAGCAATGTAATTGCCTCCCAGATACAGTTTTTCCAGTTTCT | + |
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Preference number: 5 (lower is better) Translates to: QHEALLVLLILLNLL*QQCNCLPDTVFPVS Trigger: AGAAACTGGAAAAACTGTATCTGGGAGGCAATTACATTGCTGTCATAGAAGGTTTAGAAGGATTAGGAGAACTAAGAGAGCTTCATGTTG 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENST00000324682.5 ENST00000519919.5 ENST00000521040.5 ENST00000522909.5 |
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| CDS TCA 90 bp | CCAGTGATTTGGACACCAATATCAGTCTGTCCCTGTATTTTGGTTTaGGACAAACAGGATTTCCATTTAGATCAATTTTCCACAGCTTCA | + |
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Preference number: 5 (lower is better) Translates to: PVIWTPISVCPCILV*DKQDFHLDQFSTAS Trigger: TGAAGCTGTGGAAAATTGATCTAAATGGAAATCCTGTTTGTCTCAAACCAAAATACAGGGACAGACTGATATTGGTGTCCAAATCACTGG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 5 transcripts: ENST00000324682.5 ENST00000518588.2 ENST00000519987.5 ENST00000521410.5 ENST00000522909.5 |
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| CDS TCA 90 bp | TCCAAATCCTTCACATGCAGAAGTTGGTTGTCAACGGCTATGAGCTaGTTAAGATTCTCTAGTAGTTCTAAGTCTGTAATGTCATCAATA | + |
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Preference number: 5 (lower is better) Translates to: SKSFTCRSWLSTAMS*LRFSSSSKSVMSSI Trigger: TATTGATGACATTACAGACTTAGAACTACTAGAGAATCTTAATCAGCTCATAGCCGTTGACAACCAACTTCTGCATGTGAAGGATTTGGA 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000324682.5 ENST00000518588.2 ENST00000521410.5 ENST00000522909.5 |
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| CDS TCA 90 bp | TACACTACCTTCACATGCAGAAGTTGGTTGTCAACGGCTATGAGCTaGTTAAGATTCTCTAGTAGTTCTAAGTCTGTAATGTCATCAATA | + |
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Preference number: 5 (lower is better) Translates to: YTTFTCRSWLSTAMS*LRFSSSSKSVMSSI Trigger: TATTGATGACATTACAGACTTAGAACTACTAGAGAATCTTAATCAGCTCATAGCCGTTGACAACCAACTTCTGCATGTGAAGGTAGTGTA 38% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000519919.5 ENST00000520633.1 |
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| CDS TCA 90 bp | AGAGATTCCTTCACATGCAGAAGTTGGTTGTCAACGGCTATGAGCTaGTTAAGATTCTCTAGTAGTTCTAAGTCTGTAATGTCATCAATA | + |
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Preference number: 5 (lower is better) Translates to: RDSFTCRSWLSTAMS*LRFSSSSKSVMSSI Trigger: TATTGATGACATTACAGACTTAGAACTACTAGAGAATCTTAATCAGCTCATAGCCGTTGACAACCAACTTCTGCATGTGAAGGAATCTCT 38% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000521040.5 |
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| CDS TCA 90 bp | CAACATGAAGCTCTCTTAGTTCTCCTAATCCTTCTAAACCTTCTATaGCAGCAATGTAATTGCCTCCCAGATACAATTGCATCTATATTT | + |
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Preference number: 5 (lower is better) Translates to: QHEALLVLLILLNLL*QQCNCLPDTIASIF Trigger: AAATATAGATGCAATTGTATCTGGGAGGCAATTACATTGCTGTCATAGAAGGTTTAGAAGGATTAGGAGAACTAAGAGAGCTTCATGTTG 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000517834.5 |
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| CDS CAA 72 bp | AGCCGCTCGCGGGACAGTCCGGTAGCTAACTCCAGTTaGGTCGGTTTCATCGGCGCCGGGTCCCTACGCAGA | + |
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Preference number: 6 (lower is better) Translates to: SRSRDSPVANSS*VGFIGAGSLRR Trigger: TCTGCGTAGGGACCCGGCGCCGATGAAACCGACCAAACTGGAGTTAGCTACCGGACTGTCCCGCGAGCGGCT 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000521581.5 |
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| CDS CAA 90 bp | TTTCTTCTGGGTTATGGAAGAGGTGAGGTTCATGCACATCATTTTTaGTCAGCAAGCTTTCAGATTGCTTCAAAGAGAGATTCCTGTGGG | + |
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Preference number: 6 (lower is better) Translates to: FLLGYGRGEVHAHHF*SASFQIASKRDSCG Trigger: CCCACAGGAATCTCTCTTTGAAGCAATCTGAAAGCTTGCTGACAAAAAATGATGTGCATGAACCTCACCTCTTCCATAACCCAGAAGAAA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000519987.5 ENST00000521998.5 |
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| CDS CAA 72 bp | CACTGTGAAATGGTTTCTTCTTTTCGGGGTTTAAGATaGCTGTTTCTGGCAATTAGATCCAAGGTCAGTCGA | + |
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Preference number: 6 (lower is better) Translates to: HCEMVSSFRGLR*LFLAIRSKVSR Trigger: TCGACTGACCTTGGATCTAATTGCCAGAAACAGCAATCTTAAACCCCGAAAAGAAGAAACCATTTCACAGTG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 5 transcripts: ENST00000324682.5 ENST00000517834.5 ENST00000521581.5 ENST00000522909.5 ENST00000523545.1 |
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| CDS CAA 72 bp | GATTGCTTCAAAGAGAGATTCCTTCACATGCAGAAGTaGGTTGTCAACGGCTATGAGCTGATTAAGATTCTC | + |
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Preference number: 6 (lower is better) Translates to: DCFKERFLHMQK*VVNGYELIKIL Trigger: GAGAATCTTAATCAGCTCATAGCCGTTGACAACCAACTTCTGCATGTGAAGGAATCTCTCTTTGAAGCAATC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000521040.5 |
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| CDS CAA 90 bp | TTCTTCAGGCACTGTGAAATGGTTTCTTCTTTTCGGGGTTTAAGATaGCTGTTTCTGGCAATTAGATCCAAGGTCAGTCGAACCATAATT | + |
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Preference number: 6 (lower is better) Translates to: FFRHCEMVSSFRGLR*LFLAIRSKVSRTII Trigger: AATTATGGTTCGACTGACCTTGGATCTAATTGCCAGAAACAGCAATCTTAAACCCCGAAAAGAAGAAACCATTTCACAGTGCCTGAAGAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 5 transcripts: ENST00000324682.5 ENST00000517834.5 ENST00000521581.5 ENST00000522909.5 ENST00000523545.1 |
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| CDS CAA 90 bp | CCCAGTGATTTGGACACCAATATCAGTCTGTCCCTGTATTTTGGTTaGAGACAAACAGGATTTCCATTTAGATCAATTTTCCACAGCTTC | + |
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Preference number: 6 (lower is better) Translates to: PSDLDTNISLSLYFG*RQTGFPFRSIFHSF Trigger: GAAGCTGTGGAAAATTGATCTAAATGGAAATCCTGTTTGTCTCAAACCAAAATACAGGGACAGACTGATATTGGTGTCCAAATCACTGGG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENST00000324682.5 ENST00000519987.5 ENST00000521410.5 |
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| CDS CAA 90 bp | TTTCTTCTGGGTTATGGAAGAGGTGAGGTTCATGCACATCATTTTTaGTCAGCAAGCTTTCAGATTGCTTCAAAGAGAGATTCCTTCACA | + |
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Preference number: 6 (lower is better) Translates to: FLLGYGRGEVHAHHF*SASFQIASKRDSFT Trigger: TGTGAAGGAATCTCTCTTTGAAGCAATCTGAAAGCTTGCTGACAAAAAATGATGTGCATGAACCTCACCTCTTCCATAACCCAGAAGAAA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000521040.5 |
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| CDS CAA 90 bp | TCCAGTGATTTGGACACCAATATCAGTCTGTCCCTGTATTTTGGTTaGAGACAAACAGGATTTCCATTTAGATCAATTTTCCACAGCTTC | + |
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Preference number: 6 (lower is better) Translates to: SSDLDTNISLSLYFG*RQTGFPFRSIFHSF Trigger: GAAGCTGTGGAAAATTGATCTAAATGGAAATCCTGTTTGTCTCAAACCAAAATACAGGGACAGACTGATATTGGTGTCCAAATCACTGGA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000518588.2 ENST00000522909.5 |
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| CDS TCA 72 bp | TTCACATGCAGAAGTTGGTTGTCAACGGCTATGAGCTaGTTAAGATTCTCTAGTAGTTCTAAGTCTGTAATG | + |
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Preference number: 6 (lower is better) Translates to: FTCRSWLSTAMS*LRFSSSSKSVM Trigger: CATTACAGACTTAGAACTACTAGAGAATCTTAATCAGCTCATAGCCGTTGACAACCAACTTCTGCATGTGAA 39% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 7 transcripts: ENST00000324682.5 ENST00000518588.2 ENST00000519919.5 ENST00000520633.1 ENST00000521040.5 ENST00000521410.5 ENST00000522909.5 |
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| CDS CAA 90 bp | TTGCATTTACAGGGTATCTCTGTATTTCAGAGAAAAAGGCTAATTTaGGCTTACCCACCTGTGGGTAATAAACAGGAACTATATGATGCA | + |
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Preference number: 6 (lower is better) Translates to: LHLQGISVFQRKRLI*AYPPVGNKQELYDA Trigger: TGCATCATATAGTTCCTGTTTATTACCCACAGGTGGGTAAGCCAAAATTAGCCTTTTTCTCTGAAATACAGAGATACCCTGTAAATGCAA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000522331.5 ENST00000522909.5 |
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| CDS GCA 72 bp | AATTTTAGTGTAATCTTCTCAGGAACTTTCTGGAGATaGATTTGCATTTACAGGGTATCTCTGTATTTCAGA | + |
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Preference number: 6 (lower is better) Translates to: NFSVIFSGTFWR*ICIYRVSLYFR Trigger: TCTGAAATACAGAGATACCCTGTAAATGCAAATGCATCTCCAGAAAGTTCCTGAGAAGATTACACTAAAATT 35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000522331.5 ENST00000522909.5 |
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