Pregenerated sensors for PPP1R26 (Homo sapiens)
Ensembl gene IDs: ENSG00000196422Ensembl transcript IDs: ENST00000401470.3, ENST00000652373.1
Found 9 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | CCTCCAAGGCTTATGGACACTGAACTCCCCTTGGCTCAGAGGCTGTaGCTGCCCTCAGGACCTCAGCAGTGGGCGAAAACTGGCCAGTAT | + |
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Preference number: 5 (lower is better) Translates to: PPRLMDTELPLAQRL*LPSGPQQWAKTGQY Trigger: ATACTGGCCAGTTTTCGCCCACTGCTGAGGTCCTGAGGGCAGCCACAGCCTCTGAGCCAAGGGGAGTTCAGTGTCCATAAGCCTTGGAGG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000401470.3 ENST00000652373.1 |
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| CDS CCA 90 bp | TTGCAGTGCAAAGCGGTTCTTGTGCAAGCAAGCCTCCAAGGCTTATaGACACTGAACTCCCCTTGGCTCAGAGGCTGTGGCTGCCCTCAG | + |
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Preference number: 5 (lower is better) Translates to: LQCKAVLVQASLQGL*TLNSPWLRGCGCPQ Trigger: CTGAGGGCAGCCACAGCCTCTGAGCCAAGGGGAGTTCAGTGTCCATAAGCCTTGGAGGCTTGCTTGCACAAGAACCGCTTTGCACTGCAA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000401470.3 ENST00000652373.1 |
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| CDS CCA 90 bp | CCTCAGCAGTGGGCGAAAACTGGCCAGTATGTTTTGCCTCTGTTATaGATTCTTCTTTACCAGGAGCTTTCTCCGGTTAACCAGGCGCTT | + |
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Preference number: 5 (lower is better) Translates to: PQQWAKTGQYVLPLL*ILLYQELSPVNQAL Trigger: AAGCGCCTGGTTAACCGGAGAAAGCTCCTGGTAAAGAAGAATCCATAACAGAGGCAAAACATACTGGCCAGTTTTCGCCCACTGCTGAGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000652373.1 |
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| CDS CCA 72 bp | CTTATGGACACTGAACTCCCCTTGGCTCAGAGGCTGTaGCTGCCCTCAGGACCTCAGCAGTGGGCGAAAACT | + |
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Preference number: 6 (lower is better) Translates to: LMDTELPLAQRL*LPSGPQQWAKT Trigger: AGTTTTCGCCCACTGCTGAGGTCCTGAGGGCAGCCACAGCCTCTGAGCCAAGGGGAGTTCAGTGTCCATAAG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000401470.3 ENST00000652373.1 |
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| CDS GCA 72 bp | CCAACCGACAAGCTCCTGCCTACCCCAAAATTGCAGTaGAAAGCGGTTCTTGTGCAAGCAAGCCTCCAAGGC | + |
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Preference number: 6 (lower is better) Translates to: PTDKLLPTPKLQ*KAVLVQASLQG Trigger: GCCTTGGAGGCTTGCTTGCACAAGAACCGCTTTGCACTGCAATTTTGGGGTAGGCAGGAGCTTGTCGGTTGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000401470.3 ENST00000652373.1 |
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| CDS CCA 72 bp | AAAGCGGTTCTTGTGCAAGCAAGCCTCCAAGGCTTATaGACACTGAACTCCCCTTGGCTCAGAGGCTGTGGC | + |
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Preference number: 6 (lower is better) Translates to: KAVLVQASLQGL*TLNSPWLRGCG Trigger: GCCACAGCCTCTGAGCCAAGGGGAGTTCAGTGTCCATAAGCCTTGGAGGCTTGCTTGCACAAGAACCGCTTT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000401470.3 ENST00000652373.1 |
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| CDS GCA 72 bp | TTGACCCAACCGACAAGCTCCTGCCTACCCCAAAATTaGAGTGCAAAGCGGTTCTTGTGCAAGCAAGCCTCC | + |
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Preference number: 6 (lower is better) Translates to: LTQPTSSCLPQN*SAKRFLCKQAS Trigger: GGAGGCTTGCTTGCACAAGAACCGCTTTGCACTGCAATTTTGGGGTAGGCAGGAGCTTGTCGGTTGGGTCAA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000401470.3 ENST00000652373.1 |
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| CDS CAA 72 bp | CTTGACCCAACCGACAAGCTCCTGCCTACCCCAAAATaGCAGTGCAAAGCGGTTCTTGTGCAAGCAAGCCTC | + |
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Preference number: 6 (lower is better) Translates to: LDPTDKLLPTPK*QCKAVLVQASL Trigger: GAGGCTTGCTTGCACAAGAACCGCTTTGCACTGCAATTTTGGGGTAGGCAGGAGCTTGTCGGTTGGGTCAAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000401470.3 ENST00000652373.1 |
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| CDS CCA 72 bp | GTGGCTGCCCTCAGGACCTCAGCAGTGGGCGAAAACTaGCCAGTATGTTTTGCCTCTGTTATGGATTCTTCT | + |
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Preference number: 6 (lower is better) Translates to: VAALRTSAVGEN*PVCFASVMDSS Trigger: AGAAGAATCCATAACAGAGGCAAAACATACTGGCCAGTTTTCGCCCACTGCTGAGGTCCTGAGGGCAGCCAC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000401470.3 ENST00000652373.1 |
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