Pregenerated sensors for PPP1R21-DT (Homo sapiens)
Ensembl gene IDs: ENSG00000272663Ensembl transcript IDs: ENST00000609028.1
Found 13 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS TCA 90 bp | CCGGGGCCAGTGGCAGCAGCCAAAGTTACAAATATCGGGAAGGTCTaGGAGTTTACAGTGCAGAGCATGTCCTGTGCTATCATATGCGGA | + |
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Preference number: 5 (lower is better) Translates to: PGPVAAAKVTNIGKV*EFTVQSMSCAIICG Trigger: TCCGCATATGATAGCACAGGACATGCTCTGCACTGTAAACTCTCAGACCTTCCCGATATTTGTAACTTTGGCTGCTGCCACTGGCCCCGG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000609028.1 |
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| CDS CCA 90 bp | AGAGACGGACACAAAGAAATGTCAAAATACAGGACACTGAAGGTTTaGAGCCGGGGCCAGTGGCAGCAGCCAAAGTTACAAATATCGGGA | + |
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Preference number: 5 (lower is better) Translates to: RDGHKEMSKYRTLKV*SRGQWQQPKLQISG Trigger: TCCCGATATTTGTAACTTTGGCTGCTGCCACTGGCCCCGGCTCCAAACCTTCAGTGTCCTGTATTTTGACATTTCTTTGTGTCCGTCTCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000609028.1 |
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| CDS CCA 90 bp | GAAATGTCAAAATACAGGACACTGAAGGTTTGGAGCCGGGGCCAGTaGCAGCAGCCAAAGTTACAAATATCGGGAAGGTCTGAGAGTTTA | + |
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Preference number: 5 (lower is better) Translates to: EMSKYRTLKVWSRGQ*QQPKLQISGRSESL Trigger: TAAACTCTCAGACCTTCCCGATATTTGTAACTTTGGCTGCTGCCACTGGCCCCGGCTCCAAACCTTCAGTGTCCTGTATTTTGACATTTC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000609028.1 |
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| CDS GCA 90 bp | CAGCAGCCAAAGTTACAAATATCGGGAAGGTCTGAGAGTTTACAGTaGAGAGCATGTCCTGTGCTATCATATGCGGATGACAAAATAGCC | + |
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Preference number: 5 (lower is better) Translates to: QQPKLQISGRSESLQ*RACPVLSYADDKIA Trigger: GGCTATTTTGTCATCCGCATATGATAGCACAGGACATGCTCTGCACTGTAAACTCTCAGACCTTCCCGATATTTGTAACTTTGGCTGCTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000609028.1 |
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| CDS CAA 90 bp | CGGTTGCCATGGGAACCCGGGGCTGTGGGGAGTCGGCCAGAATTCTaGATGCGCTTAGAATGTTTCTTCTTCCGGCCCTCTGGTCTTCGC | + |
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Preference number: 6 (lower is better) Translates to: RLPWEPGAVGSRPEF*MRLECFFFRPSGLR Trigger: GCGAAGACCAGAGGGCCGGAAGAAGAAACATTCTAAGCGCATCAAGAATTCTGGCCGACTCCCCACAGCCCCGGGTTCCCATGGCAACCG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000609028.1 |
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| CDS CAA 72 bp | TGGGAACCCGGGGCTGTGGGGAGTCGGCCAGAATTCTaGATGCGCTTAGAATGTTTCTTCTTCCGGCCCTCT | + |
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Preference number: 6 (lower is better) Translates to: WEPGAVGSRPEF*MRLECFFFRPS Trigger: AGAGGGCCGGAAGAAGAAACATTCTAAGCGCATCAAGAATTCTGGCCGACTCCCCACAGCCCCGGGTTCCCA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000609028.1 |
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| CDS CCA 72 bp | AAATACAGGACACTGAAGGTTTGGAGCCGGGGCCAGTaGCAGCAGCCAAAGTTACAAATATCGGGAAGGTCT | + |
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Preference number: 6 (lower is better) Translates to: KYRTLKVWSRGQ*QQPKLQISGRS Trigger: AGACCTTCCCGATATTTGTAACTTTGGCTGCTGCCACTGGCCCCGGCTCCAAACCTTCAGTGTCCTGTATTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000609028.1 |
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| CDS TCA 72 bp | GTGGCAGCAGCCAAAGTTACAAATATCGGGAAGGTCTaGGAGTTTACAGTGCAGAGCATGTCCTGTGCTATC | + |
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Preference number: 6 (lower is better) Translates to: VAAAKVTNIGKV*EFTVQSMSCAI Trigger: GATAGCACAGGACATGCTCTGCACTGTAAACTCTCAGACCTTCCCGATATTTGTAACTTTGGCTGCTGCCAC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000609028.1 |
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| CDS CCA 72 bp | CACAAAGAAATGTCAAAATACAGGACACTGAAGGTTTaGAGCCGGGGCCAGTGGCAGCAGCCAAAGTTACAA | + |
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Preference number: 6 (lower is better) Translates to: HKEMSKYRTLKV*SRGQWQQPKLQ Trigger: TTGTAACTTTGGCTGCTGCCACTGGCCCCGGCTCCAAACCTTCAGTGTCCTGTATTTTGACATTTCTTTGTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000609028.1 |
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| CDS CAA 72 bp | ACACAAAGAAATGTCAAAATACAGGACACTGAAGGTTaGGAGCCGGGGCCAGTGGCAGCAGCCAAAGTTACA | + |
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Preference number: 6 (lower is better) Translates to: TQRNVKIQDTEG*EPGPVAAAKVT Trigger: TGTAACTTTGGCTGCTGCCACTGGCCCCGGCTCCAAACCTTCAGTGTCCTGTATTTTGACATTTCTTTGTGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000609028.1 |
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| CDS TCA 72 bp | ACAGTGCAGAGCATGTCCTGTGCTATCATATGCGGATaGCAAAATAGCCGAATACACAAATCTTTCCACGCT | + |
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Preference number: 6 (lower is better) Translates to: TVQSMSCAIICG*QNSRIHKSFHA Trigger: AGCGTGGAAAGATTTGTGTATTCGGCTATTTTGTCATCCGCATATGATAGCACAGGACATGCTCTGCACTGT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000609028.1 |
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| CDS GCA 72 bp | AAGTTACAAATATCGGGAAGGTCTGAGAGTTTACAGTaGAGAGCATGTCCTGTGCTATCATATGCGGATGAC | + |
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Preference number: 6 (lower is better) Translates to: KLQISGRSESLQ*RACPVLSYADD Trigger: GTCATCCGCATATGATAGCACAGGACATGCTCTGCACTGTAAACTCTCAGACCTTCCCGATATTTGTAACTT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000609028.1 |
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| CDS TCA 72 bp | CATATCTACTCTGCATGCATAGAAGGAATCGATACCTaGAATTTCCTAAAGGTCTTTTACTCAGTCCCCACA | + |
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Preference number: 6 (lower is better) Translates to: HIYSACIEGIDT*NFLKVFYSVPT Trigger: TGTGGGGACTGAGTAAAAGACCTTTAGGAAATTTCAGGTATCGATTCCTTCTATGCATGCAGAGTAGATATG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000609028.1 |
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