Pregenerated sensors for PPP1R14B (Homo sapiens)

Ensembl gene IDs: ENSG00000173457

Ensembl transcript IDs: ENST00000392210.6, ENST00000542235.1

Found 7 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS GCA 90 bp	CACAGTCTAACCCAGCGGGCACCAGGCGGTGAGACCTCCTGCCGCTaGCAGCCCAGGATAGCCCCCTTGCCTCTTGCCCAAGGCTCAGGC	+
Preference number: 5 (lower is better) Translates to: HSLTQRAPGGETSCR*QPRIAPLPLAQGSG Trigger: GCCTGAGCCTTGGGCAAGAGGCAAGGGGGCTATCCTGGGCTGGCAGCGGCAGGAGGTCTCACCGCCTGGTGCCCGCTGGGTTAGACTGTG 68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000392210.6
CDS CCA 90 bp	GGAGGAACCCAGCCCTCTGCCCAGCAGACAGAACAGCAGCTGCTCTaGGGAGGAAAACAGATCAGGCCCGTGCCAAGGCAAACTGCCCAA	+
Preference number: 5 (lower is better) Translates to: GGTQPSAQQTEQQLL*GGKQIRPVPRQTAQ Trigger: TTGGGCAGTTTGCCTTGGCACGGGCCTGATCTGTTTTCCTCCCCAGAGCAGCTGCTGTTCTGTCTGCTGGGCAGAGGGCTGGGTTCCTCC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000542235.1
CDS GCA 72 bp	ACCCAGCGGGCACCAGGCGGTGAGACCTCCTGCCGCTaGCAGCCCAGGATAGCCCCCTTGCCTCTTGCCCAA	+
Preference number: 6 (lower is better) Translates to: TQRAPGGETSCR*QPRIAPLPLAQ Trigger: TTGGGCAAGAGGCAAGGGGGCTATCCTGGGCTGGCAGCGGCAGGAGGTCTCACCGCCTGGTGCCCGCTGGGT 69% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000392210.6
CDS CAA 90 bp	CCAGGCGGTGAGACCTCCTGCCGCTGCCAGCCCAGGATAGCCCCCTaGCCTCTTGCCCAAGGCTCAGGCTACCCCTTGAGGCGTCTGGAG	+
Preference number: 6 (lower is better) Translates to: PGGETSCRCQPRIAP*PLAQGSGYPLRRLE Trigger: CTCCAGACGCCTCAAGGGGTAGCCTGAGCCTTGGGCAAGAGGCAAGGGGGCTATCCTGGGCTGGCAGCGGCAGGAGGTCTCACCGCCTGG 68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000392210.6
CDS CAA 72 bp	GAGACCTCCTGCCGCTGCCAGCCCAGGATAGCCCCCTaGCCTCTTGCCCAAGGCTCAGGCTACCCCTTGAGG	+
Preference number: 6 (lower is better) Translates to: ETSCRCQPRIAP*PLAQGSGYPLR Trigger: CCTCAAGGGGTAGCCTGAGCCTTGGGCAAGAGGCAAGGGGGCTATCCTGGGCTGGCAGCGGCAGGAGGTCTC 67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000392210.6
CDS CAA 72 bp	GCCCCCTTGCCTCTTGCCCAAGGCTCAGGCTACCCCTaGAGGCGTCTGGAGGACACTAGGCTTGACCTGGGG	+
Preference number: 6 (lower is better) Translates to: APLPLAQGSGYP*RRLEDTRLDLG Trigger: CCCCAGGTCAAGCCTAGTGTCCTCCAGACGCCTCAAGGGGTAGCCTGAGCCTTGGGCAAGAGGCAAGGGGGC 65% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000392210.6
CDS CAA 90 bp	AGACATAAGCCTGAGTTGGAGAGAGGGTGTGAGAGGGGCTCTGGGTaGAGGCCCCTGCCTACCTCGGAGGAACCCAGCCCTCTGCCCAGC	+
Preference number: 6 (lower is better) Translates to: RHKPELERGCERGSG*RPLPTSEEPSPLPS Trigger: GCTGGGCAGAGGGCTGGGTTCCTCCGAGGTAGGCAGGGGCCTCAACCCAGAGCCCCTCTCACACCCTCTCTCCAACTCAGGCTTATGTCT 63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000542235.1

---

If you would like us to post a table for your organism of interest, or have questions, please reach out to eerik at stanford dot edu or xjgao at stanford.edu