Pregenerated sensors for PPM1B-DT (Homo sapiens)
Ensembl gene IDs: ENSG00000273106Ensembl transcript IDs: ENST00000609837.1
Found 10 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | AAGCCCCTGCAATTCCGGGTGGGACCAGGCGTCCACACCTATAGCTaGACTGCTCGTTGGTCCCTTATGGCGCTTCTTTTACGCGAGGCT | + |
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Preference number: 5 (lower is better) Translates to: KPLQFRVGPGVHTYS*TARWSLMALLLREA Trigger: AGCCTCGCGTAAAAGAAGCGCCATAAGGGACCAACGAGCAGTCCAGCTATAGGTGTGGACGCCTGGTCCCACCCGGAATTGCAGGGGCTT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000609837.1 |
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| CDS GCA 90 bp | GCACAAAATCCTCCTGAAGGGAACACCTGTCCCACTTTCTCACGTTaGTTTCCAGGTTCTTCCGACACCCCAATTTCCCGCCCACTCTTC | + |
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Preference number: 5 (lower is better) Translates to: AQNPPEGNTCPTFSR*FPGSSDTPISRPLF Trigger: GAAGAGTGGGCGGGAAATTGGGGTGTCGGAAGAACCTGGAAAGCAACGTGAGAAAGTGGGACAGGTGTTCCCTTCAGGAGGATTTTGTGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000609837.1 |
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| CDS TCA 90 bp | ACGGTCCTCACAGAACGGAAAGGATCCGTACAGACTCTCCGGGTTTaGCCGTTTTCTAGGACGAACCAATCGCTTTCCAGATACTTCCCC | + |
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Preference number: 5 (lower is better) Translates to: TVLTERKGSVQTLRV*PFSRTNQSLSRYFP Trigger: GGGGAAGTATCTGGAAAGCGATTGGTTCGTCCTAGAAAACGGTCAAACCCGGAGAGTCTGTACGGATCCTTTCCGTTCTGTGAGGACCGT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000609837.1 |
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| CDS TCA 90 bp | ATAAAGGGTTGGGTCTCACTTAGTGGGCGGTGTTTGATGGACAGCTaGCCTTGCCTATTGAAAGTAGCCACTGATGCCCAATGGGAAATT | + |
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Preference number: 5 (lower is better) Translates to: IKGWVSLSGRCLMDS*PCLLKVATDAQWEI Trigger: AATTTCCCATTGGGCATCAGTGGCTACTTTCAATAGGCAAGGTCAGCTGTCCATCAAACACCGCCCACTAAGTGAGACCCAACCCTTTAT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000609837.1 |
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| CDS GCA 72 bp | CCCAGAGCCCGGCCTTCCCAGTTTCCCACTCTCGCCTaGGCCCCACCCGCGGCTGAAGCAAAACAACCGCCT | + |
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Preference number: 6 (lower is better) Translates to: PRARPSQFPTLA*APPAAEAKQPP Trigger: AGGCGGTTGTTTTGCTTCAGCCGCGGGTGGGGCGCAGGCGAGAGTGGGAAACTGGGAAGGCCGGGCTCTGGG 68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000609837.1 |
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| CDS GCA 72 bp | CCTCCTGAAGGGAACACCTGTCCCACTTTCTCACGTTaGTTTCCAGGTTCTTCCGACACCCCAATTTCCCGC | + |
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Preference number: 6 (lower is better) Translates to: PPEGNTCPTFSR*FPGSSDTPISR Trigger: GCGGGAAATTGGGGTGTCGGAAGAACCTGGAAAGCAACGTGAGAAAGTGGGACAGGTGTTCCCTTCAGGAGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000609837.1 |
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| CDS CCA 72 bp | CAATTCCGGGTGGGACCAGGCGTCCACACCTATAGCTaGACTGCTCGTTGGTCCCTTATGGCGCTTCTTTTA | + |
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Preference number: 6 (lower is better) Translates to: QFRVGPGVHTYS*TARWSLMALLL Trigger: TAAAAGAAGCGCCATAAGGGACCAACGAGCAGTCCAGCTATAGGTGTGGACGCCTGGTCCCACCCGGAATTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000609837.1 |
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| CDS TCA 72 bp | GAAATTGGCTCAGTGACTGACCCGCAAGAAAGCCAGTaGCTGGGGGTTCGGATCACGAGTTGGACCAATAAG | + |
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Preference number: 6 (lower is better) Translates to: EIGSVTDPQESQ*LGVRITSWTNK Trigger: CTTATTGGTCCAACTCGTGATCCGAACCCCCAGTCACTGGCTTTCTTGCGGGTCAGTCACTGAGCCAATTTC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000609837.1 |
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| CDS TCA 72 bp | TGGGTCTCACTTAGTGGGCGGTGTTTGATGGACAGCTaGCCTTGCCTATTGAAAGTAGCCACTGATGCCCAA | + |
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Preference number: 6 (lower is better) Translates to: WVSLSGRCLMDS*PCLLKVATDAQ Trigger: TTGGGCATCAGTGGCTACTTTCAATAGGCAAGGTCAGCTGTCCATCAAACACCGCCCACTAAGTGAGACCCA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000609837.1 |
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| CDS TCA 72 bp | ACAGAACGGAAAGGATCCGTACAGACTCTCCGGGTTTaGCCGTTTTCTAGGACGAACCAATCGCTTTCCAGA | + |
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Preference number: 6 (lower is better) Translates to: TERKGSVQTLRV*PFSRTNQSLSR Trigger: TCTGGAAAGCGATTGGTTCGTCCTAGAAAACGGTCAAACCCGGAGAGTCTGTACGGATCCTTTCCGTTCTGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000609837.1 |
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