RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for PPEF1 (Homo sapiens)

Ensembl gene IDs: ENSG00000086717

Ensembl transcript IDs: ENST00000349874.9, ENST00000361511.8, ENST00000379962.3, ENST00000470157.1, ENST00000471570.5, ENST00000472826.5, ENST00000486029.1, ENST00000496075.2, ENST00000496616.5

Found 291 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp CTGTATGAGTTCCTTTCAGGATGTTTTCAAACCGCTCTGGCCTCCTaGTTAGGTGGCACTCACGACAACACCACTAGGTCCAACCCAGTT +
Preference number: 1 (lower is better)
Translates to: LYEFLSGCFQTALAS*LGGTHDNTTRSNPV
Trigger: AACTGGGTTGGACCTAGTGGTGTTGTCGTGAGTGCCACCTAACCAGGAGGCCAGAGCGGTTTGAAAACATCCTGAAAGGAACTCATACAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000349874.9
ENST00000361511.8
3UTR TCA 90 bp GCTACTGACTATGAATTTCAGGGGTGTTGGAAAGGACTGTACTTGTaGTTTGGGCCTAGCTGTTTCAGGGAGCCTGAGGGAAGCTCTCAT +
Preference number: 1 (lower is better)
Translates to: ATDYEFQGCWKGLYL*FGPSCFREPEGSSH
Trigger: ATGAGAGCTTCCCTCAGGCTCCCTGAAACAGCTAGGCCCAAATCACAAGTACAGTCCTTTCCAACACCCCTGAAATTCATAGTCAGTAGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000349874.9
ENST00000361511.8
3UTR GCA 90 bp CTCCCTCAGTCACTCACAGATGTCAAGCTTAGTAGTTTTCTCTTGTaGTGTATGAGTTCCTTTCAGGATGTTTTCAAACCGCTCTGGCCT +
Preference number: 1 (lower is better)
Translates to: LPQSLTDVKLSSFLL*CMSSFQDVFKPLWP
Trigger: AGGCCAGAGCGGTTTGAAAACATCCTGAAAGGAACTCATACAGCACAAGAGAAAACTACTAAGCTTGACATCTGTGAGTGACTGAGGGAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000349874.9
ENST00000361511.8
3UTR TCA 90 bp AGTCACTCACAGATGTCAAGCTTAGTAGTTTTCTCTTGTGCTGTATaGGTTCCTTTCAGGATGTTTTCAAACCGCTCTGGCCTCCTGGTT +
Preference number: 1 (lower is better)
Translates to: SHSQMSSLVVFSCAV*VPFRMFSNRSGLLV
Trigger: AACCAGGAGGCCAGAGCGGTTTGAAAACATCCTGAAAGGAACTCATACAGCACAAGAGAAAACTACTAAGCTTGACATCTGTGAGTGACT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000349874.9
ENST00000361511.8
3UTR TCA 90 bp TTGCTAGGGACTTCCAAAACCCATACTATGCATCTGTTTGTGGGATaGATTGGGATCTGCTTTTCTCTGCTACTGACTATGAATTTCAGG +
Preference number: 1 (lower is better)
Translates to: LLGTSKTHTMHLFVG*IGICFSLLLTMNFR
Trigger: CCTGAAATTCATAGTCAGTAGCAGAGAAAAGCAGATCCCAATTCATCCCACAAACAGATGCATAGTATGGGTTTTGGAAGTCCCTAGCAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000349874.9
ENST00000361511.8
3UTR-3UTR TCA 90 bp CTGGCCTCCTGGTTAGGTGGCACTCACGACAACACCACTAGGTCCAACCCAGTTAAAGGACTGTACTTGTaGTTTGGGCCTAGCTGTTTC +
Preference number: 2 (lower is better)
Translates to: LASWLGGTHDNTTRSNPVKGLYL*FGPSCF
Trigger: GAAACAGCTAGGCCCAAATCACAAGTACAGTCCTTT...AACTGGGTTGGACCTAGTGGTGTTGTCGTGAGTGCCACCTAACCAGGAGGCCAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000349874.9
ENST00000361511.8
3UTR-3UTR CCA 90 bp CCTGGTATTCCTCCTGTCTCCCTCAGTCACTCACAGATGTCAAGCTTAGTAGTTGGCCTCCTGGTTAGGTaGCACTCACGACAACACCAC +
Preference number: 2 (lower is better)
Translates to: PGIPPVSLSHSQMSSLVVGLLVR*HSRQHH
Trigger: GTGGTGTTGTCGTGAGTGCCACCTAACCAGGAGGCC...AACTACTAAGCTTGACATCTGTGAGTGACTGAGGGAGACAGGAGGAATACCAGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000349874.9
ENST00000361511.8
3UTR-3UTR CCA 90 bp ATTCCTCCTGTCTCCCTCAGTCACTCACAGATGTCAAGCTTAGTAGTTTTCTCTACCGCTCTGGCCTCCTaGTTAGGTGGCACTCACGAC +
Preference number: 2 (lower is better)
Translates to: IPPVSLSHSQMSSLVVFSTALAS*LGGTHD
Trigger: GTCGTGAGTGCCACCTAACCAGGAGGCCAGAGCGGT...AGAGAAAACTACTAAGCTTGACATCTGTGAGTGACTGAGGGAGACAGGAGGAAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000349874.9
ENST00000361511.8
3UTR-3UTR TCA 90 bp GAGTTCCTTTCAGGATGTTTTCAAACCGCTCTGGCCTCCTGGTTAGGTGGCACTAAAGGACTGTACTTGTaGTTTGGGCCTAGCTGTTTC +
Preference number: 2 (lower is better)
Translates to: EFLSGCFQTALASWLGGTKGLYL*FGPSCF
Trigger: GAAACAGCTAGGCCCAAATCACAAGTACAGTCCTTT...AGTGCCACCTAACCAGGAGGCCAGAGCGGTTTGAAAACATCCTGAAAGGAACTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000349874.9
ENST00000361511.8
3UTR CAA 90 bp CTGACTATGAATTTCAGGGGTGTTGGAAAGGACTGTACTTGTGATTaGGGCCTAGCTGTTTCAGGGAGCCTGAGGGAAGCTCTCATTTGT +
Preference number: 2 (lower is better)
Translates to: LTMNFRGVGKDCTCD*GLAVSGSLREALIC
Trigger: ACAAATGAGAGCTTCCCTCAGGCTCCCTGAAACAGCTAGGCCCAAATCACAAGTACAGTCCTTTCCAACACCCCTGAAATTCATAGTCAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000349874.9
ENST00000361511.8
3UTR-3UTR CCA 90 bp GAGTTCCTTTCAGGATGTTTTCAAACCGCTCTGGCCTCCTGGTTAGGTGGCACTCTATGCATCTGTTTGTaGGATGAATTGGGATCTGCT +
Preference number: 2 (lower is better)
Translates to: EFLSGCFQTALASWLGGTLCICL*DELGSA
Trigger: AGCAGATCCCAATTCATCCCACAAACAGATGCATAG...AGTGCCACCTAACCAGGAGGCCAGAGCGGTTTGAAAACATCCTGAAAGGAACTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000349874.9
ENST00000361511.8
3UTR-3UTR CCA 90 bp ACCTGGTATTCCTCCTGTCTCCCTCAGTCACTCACAGATGTCAAGCTTAGTAGTCTATGCATCTGTTTGTaGGATGAATTGGGATCTGCT +
Preference number: 2 (lower is better)
Translates to: TWYSSCLPQSLTDVKLSSLCICL*DELGSA
Trigger: AGCAGATCCCAATTCATCCCACAAACAGATGCATAG...ACTACTAAGCTTGACATCTGTGAGTGACTGAGGGAGACAGGAGGAATACCAGGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000349874.9
ENST00000361511.8
3UTR CAA 90 bp TGTCTCCCTCAGTCACTCACAGATGTCAAGCTTAGTAGTTTTCTCTaGTGCTGTATGAGTTCCTTTCAGGATGTTTTCAAACCGCTCTGG +
Preference number: 2 (lower is better)
Translates to: CLPQSLTDVKLSSFL*CCMSSFQDVFKPLW
Trigger: CCAGAGCGGTTTGAAAACATCCTGAAAGGAACTCATACAGCACAAGAGAAAACTACTAAGCTTGACATCTGTGAGTGACTGAGGGAGACA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000349874.9
ENST00000361511.8
3UTR-3UTR GCA 90 bp GTCTCCCTCAGTCACTCACAGATGTCAAGCTTAGTAGTTTTCTCTTGTGCTGTACCAAAACCCATACTATaGATCTGTTTGTGGGATGAA +
Preference number: 2 (lower is better)
Translates to: VSLSHSQMSSLVVFSCAVPKPIL*ICLWDE
Trigger: TTCATCCCACAAACAGATGCATAGTATGGGTTTTGG...TACAGCACAAGAGAAAACTACTAAGCTTGACATCTGTGAGTGACTGAGGGAGAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000349874.9
ENST00000361511.8
3UTR-3UTR TCA 90 bp GATGTCAAGCTTAGTAGTTTTCTCTTGTGCTGTATGAGTTCCTTTCAGGATGTTCATCTGTTTGTGGGATaGATTGGGATCTGCTTTTCT +
Preference number: 2 (lower is better)
Translates to: DVKLSSFLLCCMSSFQDVHLFVG*IGICFS
Trigger: AGAAAAGCAGATCCCAATTCATCCCACAAACAGATG...AACATCCTGAAAGGAACTCATACAGCACAAGAGAAAACTACTAAGCTTGACATC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000349874.9
ENST00000361511.8
3UTR-3UTR CCA 90 bp AAGATGGAAAGACTTTATTCCATGAATAACCTGGTATTCCTCCTGTCTCCCTCAAACCCAGTTTCTCACTaGCAATATGTAGGTACTAAT +
Preference number: 2 (lower is better)
Translates to: KMERLYSMNNLVFLLSPSNPVSH*QYVGTN
Trigger: ATTAGTACCTACATATTGCCAGTGAGAAACTGGGTT...TGAGGGAGACAGGAGGAATACCAGGTTATTCATGGAATAAAGTCTTTCCATCTT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000349874.9
ENST00000361511.8
3UTR CCA 72 bp TTCCTTTCAGGATGTTTTCAAACCGCTCTGGCCTCCTaGTTAGGTGGCACTCACGACAACACCACTAGGTCC +
Preference number: 3 (lower is better)
Translates to: FLSGCFQTALAS*LGGTHDNTTRS
Trigger: GGACCTAGTGGTGTTGTCGTGAGTGCCACCTAACCAGGAGGCCAGAGCGGTTTGAAAACATCCTGAAAGGAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000349874.9
ENST00000361511.8
3UTR TCA 72 bp TATGAATTTCAGGGGTGTTGGAAAGGACTGTACTTGTaGTTTGGGCCTAGCTGTTTCAGGGAGCCTGAGGGA +
Preference number: 3 (lower is better)
Translates to: YEFQGCWKGLYL*FGPSCFREPEG
Trigger: TCCCTCAGGCTCCCTGAAACAGCTAGGCCCAAATCACAAGTACAGTCCTTTCCAACACCCCTGAAATTCATA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000349874.9
ENST00000361511.8
3UTR-3UTR CAA 90 bp TATGAGTTCCTTTCAGGATGTTTTCAAACCGCTCTGGCCTCCTGGTTAGGTGGCCTTACCAATAACAGCTaGCTAGGGACTTCCAAAACC +
Preference number: 3 (lower is better)
Translates to: YEFLSGCFQTALASWLGGLTNNS*LGTSKT
Trigger: GGTTTTGGAAGTCCCTAGCAAGCTGTTATTGGTAAG...GCCACCTAACCAGGAGGCCAGAGCGGTTTGAAAACATCCTGAAAGGAACTCATA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000349874.9
ENST00000361511.8
3UTR-3UTR CAA 90 bp ACCTGGTATTCCTCCTGTCTCCCTCAGTCACTCACAGATGTCAAGCTTAGTAGTTGTTTGTGGGATGAATaGGGATCTGCTTTTCTCTGC +
Preference number: 3 (lower is better)
Translates to: TWYSSCLPQSLTDVKLSSCLWDE*GSAFLC
Trigger: GCAGAGAAAAGCAGATCCCAATTCATCCCACAAACA...ACTACTAAGCTTGACATCTGTGAGTGACTGAGGGAGACAGGAGGAATACCAGGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000349874.9
ENST00000361511.8
3UTR CCA 72 bp CACGACAACACCACTAGGTCCAACCCAGTTTCTCACTaGCAATATGTAGGTACTAATGCTGAAACCAAATCC +
Preference number: 3 (lower is better)
Translates to: HDNTTRSNPVSH*QYVGTNAETKS
Trigger: GGATTTGGTTTCAGCATTAGTACCTACATATTGCCAGTGAGAAACTGGGTTGGACCTAGTGGTGTTGTCGTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000349874.9
ENST00000361511.8
3UTR-3UTR CAA 90 bp ATTCCTCCTGTCTCCCTCAGTCACTCACAGATGTCAAGCTTAGTAGTTTTCTCTATACTATGCATCTGTTaGTGGGATGAATTGGGATCT +
Preference number: 3 (lower is better)
Translates to: IPPVSLSHSQMSSLVVFSILCIC*WDELGS
Trigger: AGATCCCAATTCATCCCACAAACAGATGCATAGTAT...AGAGAAAACTACTAAGCTTGACATCTGTGAGTGACTGAGGGAGACAGGAGGAAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000349874.9
ENST00000361511.8
3UTR GCA 72 bp TCACTCACAGATGTCAAGCTTAGTAGTTTTCTCTTGTaGTGTATGAGTTCCTTTCAGGATGTTTTCAAACCG +
Preference number: 3 (lower is better)
Translates to: SLTDVKLSSFLL*CMSSFQDVFKP
Trigger: CGGTTTGAAAACATCCTGAAAGGAACTCATACAGCACAAGAGAAAACTACTAAGCTTGACATCTGTGAGTGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000349874.9
ENST00000361511.8
CDS-3UTR TCA 90 bp CTGGCCTCCTGGTTAGGTGGCACTCACGACAACACCACTAGGTCCAACCCAGTTGGTACCAGTTCTGGATaGTCAACGCAGCTCTCAGTG +
Preference number: 4 (lower is better)
Translates to: LASWLGGTHDNTTRSNPVGTSSG*STQLSV
Trigger: CACTGAGAGCTGCGTTGATCATCCAGAACTGGTACC...AACTGGGTTGGACCTAGTGGTGTTGTCGTGAGTGCCACCTAACCAGGAGGCCAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000349874.9
ENST00000361511.8
CDS-3UTR TCA 90 bp CTGGCCTCCTGGTTAGGTGGCACTCACGACAACACCACTAGGTCCAACCCAGTTATACGGGTTCCTCTCTaGGGGGAGACCATTCTTGTA +
Preference number: 4 (lower is better)
Translates to: LASWLGGTHDNTTRSNPVIRVPL*GETILV
Trigger: TACAAGAATGGTCTCCCCTCAGAGAGGAACCCGTAT...AACTGGGTTGGACCTAGTGGTGTTGTCGTGAGTGCCACCTAACCAGGAGGCCAG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000349874.9
ENST00000361511.8
CDS-3UTR GCA 90 bp CAAACCGCTCTGGCCTCCTGGTTAGGTGGCACTCACGACAACACCACTAGGTCCTTCTCTCTGGGGAAATaGAGAGGGCTTGTGTGTTTG +
Preference number: 4 (lower is better)
Translates to: QTALASWLGGTHDNTTRSFSLGK*RGLVCL
Trigger: CAAACACACAAGCCCTCTGCATTTCCCCAGAGAGAA...GGACCTAGTGGTGTTGTCGTGAGTGCCACCTAACCAGGAGGCCAGAGCGGTTTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000349874.9
ENST00000361511.8
CDS-3UTR CCA 90 bp TGTACTTGTGATTTGGGCCTAGCTGTTTCAGGGAGCCTGAGGGAAGCTCTCATTACCGCTCTGGCCTCCTaGTTAGGTGGCACTCACGAC +
Preference number: 4 (lower is better)
Translates to: CTCDLGLAVSGSLREALITALAS*LGGTHD
Trigger: GTCGTGAGTGCCACCTAACCAGGAGGCCAGAGCGGT...AATGAGAGCTTCCCTCAGGCTCCCTGAAACAGCTAGGCCCAAATCACAAGTACA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000349874.9
ENST00000361511.8
CDS-3UTR CCA 90 bp CAAACCGCTCTGGCCTCCTGGTTAGGTGGCACTCACGACAACACCACTAGGTCCAACGATTGTACCGATTaGGAGCCAGGCATAGAATTC +
Preference number: 4 (lower is better)
Translates to: QTALASWLGGTHDNTTRSNDCTD*EPGIEF
Trigger: GAATTCTATGCCTGGCTCCCAATCGGTACAATCGTT...GGACCTAGTGGTGTTGTCGTGAGTGCCACCTAACCAGGAGGCCAGAGCGGTTTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000349874.9
ENST00000361511.8
CDS-3UTR TCA 90 bp CCTGGTATTCCTCCTGTCTCCCTCAGTCACTCACAGATGTCAAGCTTAGTAGTTTTGACTCTTTCAGCCTaGCCTGCGGGCTCAGGACAC +
Preference number: 4 (lower is better)
Translates to: PGIPPVSLSHSQMSSLVVLTLSA*PAGSGH
Trigger: GTGTCCTGAGCCCGCAGGTCAGGCTGAAAGAGTCAA...AACTACTAAGCTTGACATCTGTGAGTGACTGAGGGAGACAGGAGGAATACCAGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000349874.9
ENST00000361511.8
CDS-3UTR TCA 90 bp TTCCTTTCAGGATGTTTTCAAACCGCTCTGGCCTCCTGGTTAGGTGGCACTCACCTTTCCCTCGAGGTTTaGTCAGGTCCACACAGGTTC +
Preference number: 4 (lower is better)
Translates to: FLSGCFQTALASWLGGTHLSLEV*SGPHRF
Trigger: GAACCTGTGTGGACCTGATCAAACCTCGAGGGAAAG...GTGAGTGCCACCTAACCAGGAGGCCAGAGCGGTTTGAAAACATCCTGAAAGGAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000349874.9
ENST00000361511.8
CDS-3UTR TCA 90 bp CAAACCGCTCTGGCCTCCTGGTTAGGTGGCACTCACGACAACACCACTAGGTCCTTTAGCCAAGGTTGGTaGCATCAGGTTTCATCAAGT +
Preference number: 4 (lower is better)
Translates to: QTALASWLGGTHDNTTRSFSQGW*HQVSSS
Trigger: ACTTGATGAAACCTGATGTCACCAACCTTGGCTAAA...GGACCTAGTGGTGTTGTCGTGAGTGCCACCTAACCAGGAGGCCAGAGCGGTTTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000349874.9
ENST00000361511.8
CDS-3UTR GCA 90 bp TTCCTTTCAGGATGTTTTCAAACCGCTCTGGCCTCCTGGTTAGGTGGCACTCACTCTTTCAGCCTGACCTaGGGGCTCAGGACACAATCT +
Preference number: 4 (lower is better)
Translates to: FLSGCFQTALASWLGGTHSFSLT*GLRTQS
Trigger: AGATTGTGTCCTGAGCCCGCAGGTCAGGCTGAAAGA...GTGAGTGCCACCTAACCAGGAGGCCAGAGCGGTTTGAAAACATCCTGAAAGGAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000349874.9
ENST00000361511.8
CDS-3UTR GCA 90 bp GAGTTCCTTTCAGGATGTTTTCAAACCGCTCTGGCCTCCTGGTTAGGTGGCACTTCTTTCAGCCTGACCTaGGGGCTCAGGACACAATCT +
Preference number: 4 (lower is better)
Translates to: EFLSGCFQTALASWLGGTSFSLT*GLRTQS
Trigger: AGATTGTGTCCTGAGCCCGCAGGTCAGGCTGAAAGA...AGTGCCACCTAACCAGGAGGCCAGAGCGGTTTGAAAACATCCTGAAAGGAACTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000349874.9
ENST00000361511.8
CDS-3UTR CCA 90 bp ATGTTTTCAAACCGCTCTGGCCTCCTGGTTAGGTGGCACTCACGACAACACCACGGGCATAGTGTTGTCTaGCCTTCAGTCGAGCTTTGT +
Preference number: 4 (lower is better)
Translates to: MFSNRSGLLVRWHSRQHHGHSVV*PSVELC
Trigger: ACAAAGCTCGACTGAAGGCCAGACAACACTATGCCC...GTGGTGTTGTCGTGAGTGCCACCTAACCAGGAGGCCAGAGCGGTTTGAAAACAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000349874.9
ENST00000361511.8
CDS-3UTR CCA 90 bp TCAGGATGTTTTCAAACCGCTCTGGCCTCCTGGTTAGGTGGCACTCACGACAACGGGCATAGTGTTGTCTaGCCTTCAGTCGAGCTTTGT +
Preference number: 4 (lower is better)
Translates to: SGCFQTALASWLGGTHDNGHSVV*PSVELC
Trigger: ACAAAGCTCGACTGAAGGCCAGACAACACTATGCCC...GTTGTCGTGAGTGCCACCTAACCAGGAGGCCAGAGCGGTTTGAAAACATCCTGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000349874.9
ENST00000361511.8
CDS-3UTR CCA 90 bp CAAACCGCTCTGGCCTCCTGGTTAGGTGGCACTCACGACAACACCACTAGGTCCTCTGATATCCCACCATaGATGACCAGGATTTCATTG +
Preference number: 4 (lower is better)
Translates to: QTALASWLGGTHDNTTRSSDIPP*MTRISL
Trigger: CAATGAAATCCTGGTCATCCATGGTGGGATATCAGA...GGACCTAGTGGTGTTGTCGTGAGTGCCACCTAACCAGGAGGCCAGAGCGGTTTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000349874.9
ENST00000361511.8
CDS-3UTR CCA 90 bp CAAACCGCTCTGGCCTCCTGGTTAGGTGGCACTCACGACAACACCACTAGGTCCATGCAAAAAGCCCACTaGCTCACAGAAAGTTTTCCT +
Preference number: 4 (lower is better)
Translates to: QTALASWLGGTHDNTTRSMQKAH*LTESFP
Trigger: AGGAAAACTTTCTGTGAGCCAGTGGGCTTTTTGCAT...GGACCTAGTGGTGTTGTCGTGAGTGCCACCTAACCAGGAGGCCAGAGCGGTTTG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000349874.9
ENST00000361511.8
CDS-3UTR CCA 90 bp CTGTATGAGTTCCTTTCAGGATGTTTTCAAACCGCTCTGGCCTCCTGGTTAGGTGGCCTCCTGGTTAGGTaGCACTCACGACAACACCAC +
Preference number: 4 (lower is better)
Translates to: LYEFLSGCFQTALASWLGGLLVR*HSRQHH
Trigger: GTGGTGTTGTCGTGAGTGCCACCTAACCAGGAGGCC...ACCTAACCAGGAGGCCAGAGCGGTTTGAAAACATCCTGAAAGGAACTCATACAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000349874.9
ENST00000361511.8
CDS-3UTR TCA 90 bp GGTGTTGGAAAGGACTGTACTTGTGATTTGGGCCTAGCTGTTTCAGGGAGCCTGATACGGGTTCCTCTCTaGGGGGAGACCATTCTTGTA +
Preference number: 4 (lower is better)
Translates to: GVGKDCTCDLGLAVSGSLIRVPL*GETILV
Trigger: TACAAGAATGGTCTCCCCTCAGAGAGGAACCCGTAT...CAGGCTCCCTGAAACAGCTAGGCCCAAATCACAAGTACAGTCCTTTCCAACACC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000349874.9
ENST00000361511.8
CDS-3UTR TCA 90 bp CTGGCCTCCTGGTTAGGTGGCACTCACGACAACACCACTAGGTCCAACCCAGTTCATCTGTTTGTGGGATaGATTGGGATCTGCTTTTCT +
Preference number: 4 (lower is better)
Translates to: LASWLGGTHDNTTRSNPVHLFVG*IGICFS
Trigger: AGAAAAGCAGATCCCAATTCATCCCACAAACAGATG...AACTGGGTTGGACCTAGTGGTGTTGTCGTGAGTGCCACCTAACCAGGAGGCCAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000349874.9
ENST00000361511.8
CDS-3UTR TCA 90 bp AGACTTTATTCCATGAATAACCTGGTATTCCTCCTGTCTCCCTCAGTCACTCACTTGACTCTTTCAGCCTaGCCTGCGGGCTCAGGACAC +
Preference number: 4 (lower is better)
Translates to: RLYSMNNLVFLLSPSVTHLTLSA*PAGSGH
Trigger: GTGTCCTGAGCCCGCAGGTCAGGCTGAAAGAGTCAA...GTGAGTGACTGAGGGAGACAGGAGGAATACCAGGTTATTCATGGAATAAAGTCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000349874.9
ENST00000361511.8
CDS-3UTR TCA 90 bp GAGTTCCTTTCAGGATGTTTTCAAACCGCTCTGGCCTCCTGGTTAGGTGGCACTTCTCCTGGTTTTCGTTaGAGAACTGCTGCATCCCAT +
Preference number: 4 (lower is better)
Translates to: EFLSGCFQTALASWLGGTSPGFR*RTAASH
Trigger: ATGGGATGCAGCAGTTCTTCAACGAAAACCAGGAGA...AGTGCCACCTAACCAGGAGGCCAGAGCGGTTTGAAAACATCCTGAAAGGAACTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000349874.9
ENST00000361511.8
CDS-3UTR TCA 90 bp CTGTATGAGTTCCTTTCAGGATGTTTTCAAACCGCTCTGGCCTCCTGGTTAGGTGGTACCAGTTCTGGATaGTCAACGCAGCTCTCAGTG +
Preference number: 4 (lower is better)
Translates to: LYEFLSGCFQTALASWLGGTSSG*STQLSV
Trigger: CACTGAGAGCTGCGTTGATCATCCAGAACTGGTACC...ACCTAACCAGGAGGCCAGAGCGGTTTGAAAACATCCTGAAAGGAACTCATACAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000349874.9
ENST00000361511.8
CDS-3UTR TCA 90 bp CTGTATGAGTTCCTTTCAGGATGTTTTCAAACCGCTCTGGCCTCCTGGTTAGGTTGGACTGGAAGATGGTaGGGGCATAGTGTTGTCTGG +
Preference number: 4 (lower is better)
Translates to: LYEFLSGCFQTALASWLGWTGRW*GHSVVW
Trigger: CCAGACAACACTATGCCCTCACCATCTTCCAGTCCA...ACCTAACCAGGAGGCCAGAGCGGTTTGAAAACATCCTGAAAGGAACTCATACAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000349874.9
ENST00000361511.8
CDS-3UTR TCA 90 bp CAAACCGCTCTGGCCTCCTGGTTAGGTGGCACTCACGACAACACCACTAGGTCCAAGTTTGTATGTGAGTaGAATTCGGCATTTGCTTCA +
Preference number: 4 (lower is better)
Translates to: QTALASWLGGTHDNTTRSKFVCE*NSAFAS
Trigger: TGAAGCAAATGCCGAATTTCACTCACATACAAACTT...GGACCTAGTGGTGTTGTCGTGAGTGCCACCTAACCAGGAGGCCAGAGCGGTTTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000349874.9
ENST00000361511.8
CDS-3UTR GCA 90 bp GAGTTCCTTTCAGGATGTTTTCAAACCGCTCTGGCCTCCTGGTTAGGTGGCACTTTCTCTCTGGGGAAATaGAGAGGGCTTGTGTGTTTG +
Preference number: 4 (lower is better)
Translates to: EFLSGCFQTALASWLGGTFSLGK*RGLVCL
Trigger: CAAACACACAAGCCCTCTGCATTTCCCCAGAGAGAA...AGTGCCACCTAACCAGGAGGCCAGAGCGGTTTGAAAACATCCTGAAAGGAACTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000349874.9
ENST00000361511.8
CDS-3UTR GCA 90 bp CTGTATGAGTTCCTTTCAGGATGTTTTCAAACCGCTCTGGCCTCCTGGTTAGGTTGCCTCCCTTTAAGCTaGGAGGAACCACTCTTAGCC +
Preference number: 4 (lower is better)
Translates to: LYEFLSGCFQTALASWLGCLPLS*EEPLLA
Trigger: GGCTAAGAGTGGTTCCTCGCAGCTTAAAGGGAGGCA...ACCTAACCAGGAGGCCAGAGCGGTTTGAAAACATCCTGAAAGGAACTCATACAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000349874.9
ENST00000361511.8
CDS-3UTR GCA 90 bp TTCCTTTCAGGATGTTTTCAAACCGCTCTGGCCTCCTGGTTAGGTGGCACTCACACAGAGTGTGAAAAGTaGCTCCCTTTAAGCTGCGAG +
Preference number: 4 (lower is better)
Translates to: FLSGCFQTALASWLGGTHTECEK*LPLSCE
Trigger: CTCGCAGCTTAAAGGGAGGCACTTTTCACACTCTGT...GTGAGTGCCACCTAACCAGGAGGCCAGAGCGGTTTGAAAACATCCTGAAAGGAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000349874.9
ENST00000361511.8
CDS-3UTR GCA 90 bp CAAACCGCTCTGGCCTCCTGGTTAGGTGGCACTCACGACAACACCACTAGGTCCAGTAGTTTTCTCTTGTaGTGTATGAGTTCCTTTCAG +
Preference number: 4 (lower is better)
Translates to: QTALASWLGGTHDNTTRSSSFLL*CMSSFQ
Trigger: CTGAAAGGAACTCATACAGCACAAGAGAAAACTACT...GGACCTAGTGGTGTTGTCGTGAGTGCCACCTAACCAGGAGGCCAGAGCGGTTTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000349874.9
ENST00000361511.8
CDS-3UTR CCA 90 bp CTGGCCTCCTGGTTAGGTGGCACTCACGACAACACCACTAGGTCCAACCCAGTTGCTTCAGGACTTTCTTaGTTTCAAATAGCACCTCTA +
Preference number: 4 (lower is better)
Translates to: LASWLGGTHDNTTRSNPVASGLS*FQIAPL
Trigger: TAGAGGTGCTATTTGAAACCAAGAAAGTCCTGAAGC...AACTGGGTTGGACCTAGTGGTGTTGTCGTGAGTGCCACCTAACCAGGAGGCCAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000349874.9
ENST00000361511.8
CDS-3UTR CCA 90 bp TACTATGCATCTGTTTGTGGGATGAATTGGGATCTGCTTTTCTCTGCTACTGACACCGCTCTGGCCTCCTaGTTAGGTGGCACTCACGAC +
Preference number: 4 (lower is better)
Translates to: YYASVCGMNWDLLFSATDTALAS*LGGTHD
Trigger: GTCGTGAGTGCCACCTAACCAGGAGGCCAGAGCGGT...GTCAGTAGCAGAGAAAAGCAGATCCCAATTCATCCCACAAACAGATGCATAGTA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000349874.9
ENST00000361511.8
3UTR CAA 72 bp AATTTCAGGGGTGTTGGAAAGGACTGTACTTGTGATTaGGGCCTAGCTGTTTCAGGGAGCCTGAGGGAAGCT +
Preference number: 4 (lower is better)
Translates to: NFRGVGKDCTCD*GLAVSGSLREA
Trigger: AGCTTCCCTCAGGCTCCCTGAAACAGCTAGGCCCAAATCACAAGTACAGTCCTTTCCAACACCCCTGAAATT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000349874.9
ENST00000361511.8
CDS-3UTR TCA 90 bp GAGTTCCTTTCAGGATGTTTTCAAACCGCTCTGGCCTCCTGGTTAGGTGGCACTTTACCAGATTCGAACTaGGGGATCTCCATGGTAAGT +
Preference number: 4 (lower is better)
Translates to: EFLSGCFQTALASWLGGTLPDSN*GISMVS
Trigger: ACTTACCATGGAGATCCCTCAGTTCGAATCTGGTAA...AGTGCCACCTAACCAGGAGGCCAGAGCGGTTTGAAAACATCCTGAAAGGAACTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000349874.9
ENST00000361511.8
CDS-3UTR GCA 90 bp TTCCTTTCAGGATGTTTTCAAACCGCTCTGGCCTCCTGGTTAGGTGGCACTCACGAGGGCTTGTGTGTTTaGAAAATTCAAGCTTCAGCC +
Preference number: 4 (lower is better)
Translates to: FLSGCFQTALASWLGGTHEGLCV*KIQASA
Trigger: GGCTGAAGCTTGAATTTTGCAAACACACAAGCCCTC...GTGAGTGCCACCTAACCAGGAGGCCAGAGCGGTTTGAAAACATCCTGAAAGGAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000349874.9
ENST00000361511.8
CDS-3UTR GCA 90 bp CTGGCCTCCTGGTTAGGTGGCACTCACGACAACACCACTAGGTCCAACCCAGTTATCTGTTCCCATTCATaGTCTGTTAAGTGTTCAGTA +
Preference number: 4 (lower is better)
Translates to: LASWLGGTHDNTTRSNPVICSHS*SVKCSV
Trigger: TACTGAACACTTAACAGAGCATGAATGGGAACAGAT...AACTGGGTTGGACCTAGTGGTGTTGTCGTGAGTGCCACCTAACCAGGAGGCCAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000361511.8
CDS-3UTR GCA 90 bp CTGGCCTCCTGGTTAGGTGGCACTCACGACAACACCACTAGGTCCAACCCAGTTTGTAAGCTCCTCGATTaGTGCCTTCTTCATAATAAT +
Preference number: 4 (lower is better)
Translates to: LASWLGGTHDNTTRSNPVCKLLD*CLLHNN
Trigger: ATTATTATGAAGAAGGCAGCAATCGAGGAGCTTACA...AACTGGGTTGGACCTAGTGGTGTTGTCGTGAGTGCCACCTAACCAGGAGGCCAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000349874.9
ENST00000361511.8
CDS-3UTR GCA 90 bp TCAGGATGTTTTCAAACCGCTCTGGCCTCCTGGTTAGGTGGCACTCACGACAACGTACAGGTTTTTCAATaGGGATATTCTGGAAGCTGG +
Preference number: 4 (lower is better)
Translates to: SGCFQTALASWLGGTHDNVQVFQ*GYSGSW
Trigger: CCAGCTTCCAGAATATCCGCATTGAAAAACCTGTAC...GTTGTCGTGAGTGCCACCTAACCAGGAGGCCAGAGCGGTTTGAAAACATCCTGA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000349874.9
ENST00000361511.8
CDS-3UTR CCA 90 bp GGTGTTGGAAAGGACTGTACTTGTGATTTGGGCCTAGCTGTTTCAGGGAGCCTGAACGATTGTACCGATTaGGAGCCAGGCATAGAATTC +
Preference number: 4 (lower is better)
Translates to: GVGKDCTCDLGLAVSGSLNDCTD*EPGIEF
Trigger: GAATTCTATGCCTGGCTCCCAATCGGTACAATCGTT...CAGGCTCCCTGAAACAGCTAGGCCCAAATCACAAGTACAGTCCTTTCCAACACC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000349874.9
ENST00000361511.8
CDS-3UTR CCA 90 bp ATGTTTTCAAACCGCTCTGGCCTCCTGGTTAGGTGGCACTCACGACAACACCACTTCCTCTCTACACGGTaGAGTAAATTCAAGTCTGTG +
Preference number: 4 (lower is better)
Translates to: MFSNRSGLLVRWHSRQHHFLSTR*SKFKSV
Trigger: CACAGACTTGAATTTACTCCACCGTGTAGAGAGGAA...GTGGTGTTGTCGTGAGTGCCACCTAACCAGGAGGCCAGAGCGGTTTGAAAACAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000349874.9
ENST00000361511.8
CDS-3UTR CCA 90 bp GAGTTCCTTTCAGGATGTTTTCAAACCGCTCTGGCCTCCTGGTTAGGTGGCACTTCCTCGGCACGTATTTaGAAAACAGCCATTTTTGCC +
Preference number: 4 (lower is better)
Translates to: EFLSGCFQTALASWLGGTSSARI*KTAIFA
Trigger: GGCAAAAATGGCTGTTTTCCAAATACGTGCCGAGGA...AGTGCCACCTAACCAGGAGGCCAGAGCGGTTTGAAAACATCCTGAAAGGAACTC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000361511.8
CDS-3UTR CCA 90 bp TGTACTTGTGATTTGGGCCTAGCTGTTTCAGGGAGCCTGAGGGAAGCTCTCATTCTTGGAAGTAACATCTaGTCCAAAATAGCAGCCCCC +
Preference number: 4 (lower is better)
Translates to: CTCDLGLAVSGSLREALILGSNI*SKIAAP
Trigger: GGGGGCTGCTATTTTGGACCAGATGTTACTTCCAAG...AATGAGAGCTTCCCTCAGGCTCCCTGAAACAGCTAGGCCCAAATCACAAGTACA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000361511.8
CDS-3UTR CCA 90 bp CTGGCCTCCTGGTTAGGTGGCACTCACGACAACACCACTAGGTCCAACCCAGTTGTTGCTTTAGTTACTTaGTACTGGAAAAATCGAGGA +
Preference number: 4 (lower is better)
Translates to: LASWLGGTHDNTTRSNPVVALVT*YWKNRG
Trigger: TCCTCGATTTTTCCAGTACCAAGTAACTAAAGCAAC...AACTGGGTTGGACCTAGTGGTGTTGTCGTGAGTGCCACCTAACCAGGAGGCCAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000349874.9
ENST00000361511.8
CDS-3UTR CCA 90 bp ATGTTTTCAAACCGCTCTGGCCTCCTGGTTAGGTGGCACTCACGACAACACCACCTATGCATCTGTTTGTaGGATGAATTGGGATCTGCT +
Preference number: 4 (lower is better)
Translates to: MFSNRSGLLVRWHSRQHHLCICL*DELGSA
Trigger: AGCAGATCCCAATTCATCCCACAAACAGATGCATAG...GTGGTGTTGTCGTGAGTGCCACCTAACCAGGAGGCCAGAGCGGTTTGAAAACAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000349874.9
ENST00000361511.8
CDS-3UTR CCA 90 bp TACTATGCATCTGTTTGTGGGATGAATTGGGATCTGCTTTTCTCTGCTACTGACGGCCTCCTGGTTAGGTaGCACTCACGACAACACCAC +
Preference number: 4 (lower is better)
Translates to: YYASVCGMNWDLLFSATDGLLVR*HSRQHH
Trigger: GTGGTGTTGTCGTGAGTGCCACCTAACCAGGAGGCC...GTCAGTAGCAGAGAAAAGCAGATCCCAATTCATCCCACAAACAGATGCATAGTA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000349874.9
ENST00000361511.8
CDS-3UTR TCA 90 bp ACTAGGTCCAACCCAGTTTCTCACTGGCAATATGTAGGTACTAATGCTGAAACCCTTTCCCTCGAGGTTTaGTCAGGTCCACACAGGTTC +
Preference number: 4 (lower is better)
Translates to: TRSNPVSHWQYVGTNAETLSLEV*SGPHRF
Trigger: GAACCTGTGTGGACCTGATCAAACCTCGAGGGAAAG...GGTTTCAGCATTAGTACCTACATATTGCCAGTGAGAAACTGGGTTGGACCTAGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000349874.9
ENST00000361511.8
CDS-3UTR TCA 90 bp CCTGGTATTCCTCCTGTCTCCCTCAGTCACTCACAGATGTCAAGCTTAGTAGTTTCTCCTGGTTTTCGTTaGAGAACTGCTGCATCCCAT +
Preference number: 4 (lower is better)
Translates to: PGIPPVSLSHSQMSSLVVSPGFR*RTAASH
Trigger: ATGGGATGCAGCAGTTCTTCAACGAAAACCAGGAGA...AACTACTAAGCTTGACATCTGTGAGTGACTGAGGGAGACAGGAGGAATACCAGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000349874.9
ENST00000361511.8
CDS-3UTR TCA 90 bp CCCATACTATGCATCTGTTTGTGGGATGAATTGGGATCTGCTTTTCTCTGCTACTGGACTGGAAGATGGTaGGGGCATAGTGTTGTCTGG +
Preference number: 4 (lower is better)
Translates to: PILCICLWDELGSAFLCYWTGRW*GHSVVW
Trigger: CCAGACAACACTATGCCCTCACCATCTTCCAGTCCA...GTAGCAGAGAAAAGCAGATCCCAATTCATCCCACAAACAGATGCATAGTATGGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000349874.9
ENST00000361511.8
CDS-3UTR TCA 90 bp TTCCTTTCAGGATGTTTTCAAACCGCTCTGGCCTCCTGGTTAGGTGGCACTCACATATCCCACCATGGATaGCCAGGATTTCATTGTCAA +
Preference number: 4 (lower is better)
Translates to: FLSGCFQTALASWLGGTHISHHG*PGFHCQ
Trigger: TTGACAATGAAATCCTGGTCATCCATGGTGGGATAT...GTGAGTGCCACCTAACCAGGAGGCCAGAGCGGTTTGAAAACATCCTGAAAGGAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000349874.9
ENST00000361511.8
CDS-3UTR TCA 90 bp ACCTGGTATTCCTCCTGTCTCCCTCAGTCACTCACAGATGTCAAGCTTAGTAGTTCGGGCTTACATTCATaGGACCTGATGAGCATCTTC +
Preference number: 4 (lower is better)
Translates to: TWYSSCLPQSLTDVKLSSSGLHS*DLMSIF
Trigger: GAAGATGCTCATCAGGTCTCATGAATGTAAGCCCGA...ACTACTAAGCTTGACATCTGTGAGTGACTGAGGGAGACAGGAGGAATACCAGGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000361511.8
CDS-3UTR TCA 90 bp TATGAGTTCCTTTCAGGATGTTTTCAAACCGCTCTGGCCTCCTGGTTAGGTGGCTTACCAGATTCGAACTaGGGGATCTCCATGGTAAGT +
Preference number: 4 (lower is better)
Translates to: YEFLSGCFQTALASWLGGLPDSN*GISMVS
Trigger: ACTTACCATGGAGATCCCTCAGTTCGAATCTGGTAA...GCCACCTAACCAGGAGGCCAGAGCGGTTTGAAAACATCCTGAAAGGAACTCATA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000349874.9
ENST00000361511.8
CDS-3UTR TCA 90 bp TATGAGTTCCTTTCAGGATGTTTTCAAACCGCTCTGGCCTCCTGGTTAGGTGGCAAAGGACTGTACTTGTaGTTTGGGCCTAGCTGTTTC +
Preference number: 4 (lower is better)
Translates to: YEFLSGCFQTALASWLGGKGLYL*FGPSCF
Trigger: GAAACAGCTAGGCCCAAATCACAAGTACAGTCCTTT...GCCACCTAACCAGGAGGCCAGAGCGGTTTGAAAACATCCTGAAAGGAACTCATA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000349874.9
ENST00000361511.8
CDS-3UTR TCA 90 bp GAGTTCCTTTCAGGATGTTTTCAAACCGCTCTGGCCTCCTGGTTAGGTGGCACTCATCTGTTTGTGGGATaGATTGGGATCTGCTTTTCT +
Preference number: 4 (lower is better)
Translates to: EFLSGCFQTALASWLGGTHLFVG*IGICFS
Trigger: AGAAAAGCAGATCCCAATTCATCCCACAAACAGATG...AGTGCCACCTAACCAGGAGGCCAGAGCGGTTTGAAAACATCCTGAAAGGAACTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000349874.9
ENST00000361511.8
CDS-3UTR GCA 90 bp GTCTCCCTCAGTCACTCACAGATGTCAAGCTTAGTAGTTTTCTCTTGTGCTGTATGCCTCCCTTTAAGCTaGGAGGAACCACTCTTAGCC +
Preference number: 4 (lower is better)
Translates to: VSLSHSQMSSLVVFSCAVCLPLS*EEPLLA
Trigger: GGCTAAGAGTGGTTCCTCGCAGCTTAAAGGGAGGCA...TACAGCACAAGAGAAAACTACTAAGCTTGACATCTGTGAGTGACTGAGGGAGAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000349874.9
ENST00000361511.8
CDS-3UTR GCA 90 bp TGTACTTGTGATTTGGGCCTAGCTGTTTCAGGGAGCCTGAGGGAAGCTCTCATTGAAAACAGCCATTTTTaGCTCTGGGATCACTCCACA +
Preference number: 4 (lower is better)
Translates to: CTCDLGLAVSGSLREALIENSHF*LWDHST
Trigger: TGTGGAGTGATCCCAGAGGCAAAAATGGCTGTTTTC...AATGAGAGCTTCCCTCAGGCTCCCTGAAACAGCTAGGCCCAAATCACAAGTACA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000361511.8
CDS-3UTR GCA 90 bp TCAGGATGTTTTCAAACCGCTCTGGCCTCCTGGTTAGGTGGCACTCACGACAACCCAAAACCCATACTATaGATCTGTTTGTGGGATGAA +
Preference number: 4 (lower is better)
Translates to: SGCFQTALASWLGGTHDNPKPIL*ICLWDE
Trigger: TTCATCCCACAAACAGATGCATAGTATGGGTTTTGG...GTTGTCGTGAGTGCCACCTAACCAGGAGGCCAGAGCGGTTTGAAAACATCCTGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000349874.9
ENST00000361511.8
CDS-3UTR CCA 90 bp TCAGGATGTTTTCAAACCGCTCTGGCCTCCTGGTTAGGTGGCACTCACGACAACTCTGTTTGTTTCCGTTaGTGGTATCAGCACAGATTT +
Preference number: 4 (lower is better)
Translates to: SGCFQTALASWLGGTHDNSVCFR*WYQHRF
Trigger: AAATCTGTGCTGATACCACCAACGGAAACAAACAGA...GTTGTCGTGAGTGCCACCTAACCAGGAGGCCAGAGCGGTTTGAAAACATCCTGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000349874.9
ENST00000361511.8
CDS-3UTR CCA 90 bp GAGTTCCTTTCAGGATGTTTTCAAACCGCTCTGGCCTCCTGGTTAGGTGGCACTTTCGAGTCAGTGTCATaGTCTCTGTTTGTTTCCGTT +
Preference number: 4 (lower is better)
Translates to: EFLSGCFQTALASWLGGTFESVS*SLFVSV
Trigger: AACGGAAACAAACAGAGACCATGACACTGACTCGAA...AGTGCCACCTAACCAGGAGGCCAGAGCGGTTTGAAAACATCCTGAAAGGAACTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000349874.9
ENST00000361511.8
CDS-3UTR CCA 90 bp CTGGCCTCCTGGTTAGGTGGCACTCACGACAACACCACTAGGTCCAACCCAGTTTTAGTTACTTGGTACTaGAAAAATCGAGGAGTTGTA +
Preference number: 4 (lower is better)
Translates to: LASWLGGTHDNTTRSNPVLVTWY*KNRGVV
Trigger: TACAACTCCTCGATTTTTCCAGTACCAAGTAACTAA...AACTGGGTTGGACCTAGTGGTGTTGTCGTGAGTGCCACCTAACCAGGAGGCCAG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000349874.9
ENST00000361511.8
CDS-3UTR TCA 90 bp CCTGGTATTCCTCCTGTCTCCCTCAGTCACTCACAGATGTCAAGCTTAGTAGTTCAATATCCGTACAAGTaGGAGGAAATTGTAGCCGAG +
Preference number: 4 (lower is better)
Translates to: PGIPPVSLSHSQMSSLVVQYPYK*EEIVAE
Trigger: CTCGGCTACAATTTCCTCTCACTTGTACGGATATTG...AACTACTAAGCTTGACATCTGTGAGTGACTGAGGGAGACAGGAGGAATACCAGG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000349874.9
ENST00000361511.8
CDS-3UTR TCA 90 bp GGTGTTGGAAAGGACTGTACTTGTGATTTGGGCCTAGCTGTTTCAGGGAGCCTGGCAAAATTTCTTTCGTaGAGCCATACCTCAGATTCA +
Preference number: 4 (lower is better)
Translates to: GVGKDCTCDLGLAVSGSLAKFLS*SHTSDS
Trigger: TGAATCTGAGGTATGGCTTCACGAAAGAAATTTTGC...CAGGCTCCCTGAAACAGCTAGGCCCAAATCACAAGTACAGTCCTTTCCAACACC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000349874.9
ENST00000361511.8
CDS-3UTR TCA 90 bp ACTAGGTCCAACCCAGTTTCTCACTGGCAATATGTAGGTACTAATGCTGAAACCCAAGTCTGTGGTCTCTaGTATCCCACCATGGATGAC +
Preference number: 4 (lower is better)
Translates to: TRSNPVSHWQYVGTNAETQVCGL*YPTMDD
Trigger: GTCATCCATGGTGGGATATCAGAGACCACAGACTTG...GGTTTCAGCATTAGTACCTACATATTGCCAGTGAGAAACTGGGTTGGACCTAGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000349874.9
ENST00000361511.8
CDS-3UTR TCA 90 bp TATGAGTTCCTTTCAGGATGTTTTCAAACCGCTCTGGCCTCCTGGTTAGGTGGCGATTTTCTGTGGTCTTaGAGTTGGAAAGCACGAGTA +
Preference number: 4 (lower is better)
Translates to: YEFLSGCFQTALASWLGGDFLWS*SWKARV
Trigger: TACTCGTGCTTTCCAACTTCAAGACCACAGAAAATC...GCCACCTAACCAGGAGGCCAGAGCGGTTTGAAAACATCCTGAAAGGAACTCATA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000349874.9
ENST00000361511.8
CDS-3UTR TCA 90 bp TGTACTTGTGATTTGGGCCTAGCTGTTTCAGGGAGCCTGAGGGAAGCTCTCATTGATTTTCTGTGGTCTTaGAGTTGGAAAGCACGAGTA +
Preference number: 4 (lower is better)
Translates to: CTCDLGLAVSGSLREALIDFLWS*SWKARV
Trigger: TACTCGTGCTTTCCAACTTCAAGACCACAGAAAATC...AATGAGAGCTTCCCTCAGGCTCCCTGAAACAGCTAGGCCCAAATCACAAGTACA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000349874.9
ENST00000361511.8
ENST00000470157.1
CDS-3UTR TCA 90 bp GGTGTTGGAAAGGACTGTACTTGTGATTTGGGCCTAGCTGTTTCAGGGAGCCTGCACAGAAAGTTTTCCTaGTTTTCTGTGGTCTTGAAG +
Preference number: 4 (lower is better)
Translates to: GVGKDCTCDLGLAVSGSLHRKFS*FSVVLK
Trigger: CTTCAAGACCACAGAAAATCAGGAAAACTTTCTGTG...CAGGCTCCCTGAAACAGCTAGGCCCAAATCACAAGTACAGTCCTTTCCAACACC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000349874.9
ENST00000361511.8
CDS-3UTR TCA 90 bp ACTTGTGATTTGGGCCTAGCTGTTTCAGGGAGCCTGAGGGAAGCTCTCATTTGTTTTAGCCAAGGTTGGTaGCATCAGGTTTCATCAAGT +
Preference number: 4 (lower is better)
Translates to: TCDLGLAVSGSLREALICFSQGW*HQVSSS
Trigger: ACTTGATGAAACCTGATGTCACCAACCTTGGCTAAA...ACAAATGAGAGCTTCCCTCAGGCTCCCTGAAACAGCTAGGCCCAAATCACAAGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000349874.9
ENST00000361511.8
ENST00000470157.1
CDS-3UTR GCA 90 bp TTCCTTTCAGGATGTTTTCAAACCGCTCTGGCCTCCTGGTTAGGTGGCACTCACTCATCCAGTTTCCCATaGAAATCACCACAGATTGTT +
Preference number: 4 (lower is better)
Translates to: FLSGCFQTALASWLGGTHSSSFP*KSPQIV
Trigger: AACAATCTGTGGTGATTTGCATGGGAAACTGGATGA...GTGAGTGCCACCTAACCAGGAGGCCAGAGCGGTTTGAAAACATCCTGAAAGGAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000349874.9
ENST00000361511.8
CDS-3UTR GCA 90 bp GAGTTCCTTTCAGGATGTTTTCAAACCGCTCTGGCCTCCTGGTTAGGTGGCACTTCATCCAGTTTCCCATaGAAATCACCACAGATTGTT +
Preference number: 4 (lower is better)
Translates to: EFLSGCFQTALASWLGGTSSSFP*KSPQIV
Trigger: AACAATCTGTGGTGATTTGCATGGGAAACTGGATGA...AGTGCCACCTAACCAGGAGGCCAGAGCGGTTTGAAAACATCCTGAAAGGAACTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000349874.9
ENST00000361511.8
CDS-3UTR GCA 90 bp ATGTTTTCAAACCGCTCTGGCCTCCTGGTTAGGTGGCACTCACGACAACACCACAGTAGTTTTCTCTTGTaGTGTATGAGTTCCTTTCAG +
Preference number: 4 (lower is better)
Translates to: MFSNRSGLLVRWHSRQHHSSFLL*CMSSFQ
Trigger: CTGAAAGGAACTCATACAGCACAAGAGAAAACTACT...GTGGTGTTGTCGTGAGTGCCACCTAACCAGGAGGCCAGAGCGGTTTGAAAACAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000349874.9
ENST00000361511.8
CDS-3UTR GCA 90 bp TTCCTTTCAGGATGTTTTCAAACCGCTCTGGCCTCCTGGTTAGGTGGCACTCACACCTGTTCCCATTCATaGTCTGTTAAGTGTTCAGTA +
Preference number: 4 (lower is better)
Translates to: FLSGCFQTALASWLGGTHTCSHS*SVKCSV
Trigger: TACTGAACACTTAACAGAGCATGAATGGGAACAGGT...GTGAGTGCCACCTAACCAGGAGGCCAGAGCGGTTTGAAAACATCCTGAAAGGAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000349874.9
CDS-3UTR CCA 90 bp TGTACTTGTGATTTGGGCCTAGCTGTTTCAGGGAGCCTGAGGGAAGCTCTCATTAGATCTTCACTTTGCTaGTTGTTGACTCTTTCAGCC +
Preference number: 4 (lower is better)
Translates to: CTCDLGLAVSGSLREALIRSSLC*LLTLSA
Trigger: GGCTGAAAGAGTCAACAACCAGCAAAGTGAAGATCT...AATGAGAGCTTCCCTCAGGCTCCCTGAAACAGCTAGGCCCAAATCACAAGTACA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000349874.9
ENST00000361511.8
CDS-3UTR CCA 90 bp TATGAGTTCCTTTCAGGATGTTTTCAAACCGCTCTGGCCTCCTGGTTAGGTGGCAGATCTTCACTTTGCTaGTTGTTGACTCTTTCAGCC +
Preference number: 4 (lower is better)
Translates to: YEFLSGCFQTALASWLGGRSSLC*LLTLSA
Trigger: GGCTGAAAGAGTCAACAACCAGCAAAGTGAAGATCT...GCCACCTAACCAGGAGGCCAGAGCGGTTTGAAAACATCCTGAAAGGAACTCATA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000349874.9
ENST00000361511.8
CDS-3UTR CCA 90 bp TACTATGCATCTGTTTGTGGGATGAATTGGGATCTGCTTTTCTCTGCTACTGACCCTCGGTACCAGTTCTaGATGATCAACGCAGCTCTC +
Preference number: 4 (lower is better)
Translates to: YYASVCGMNWDLLFSATDPRYQF*MINAAL
Trigger: GAGAGCTGCGTTGATCATCCAGAACTGGTACCGAGG...GTCAGTAGCAGAGAAAAGCAGATCCCAATTCATCCCACAAACAGATGCATAGTA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000349874.9
ENST00000361511.8
CDS-3UTR CCA 90 bp GAGTTCCTTTCAGGATGTTTTCAAACCGCTCTGGCCTCCTGGTTAGGTGGCACTGTGGATAACTGCATTTaGCCTTGTTCATCAGCATAT +
Preference number: 4 (lower is better)
Translates to: EFLSGCFQTALASWLGGTVDNCI*PCSSAY
Trigger: ATATGCTGATGAACAAGGCCAAATGCAGTTATCCAC...AGTGCCACCTAACCAGGAGGCCAGAGCGGTTTGAAAACATCCTGAAAGGAACTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000349874.9
ENST00000361511.8
CDS-3UTR CCA 90 bp GAGTTCCTTTCAGGATGTTTTCAAACCGCTCTGGCCTCCTGGTTAGGTGGCACTGCTTCAGGACTTTCTTaGTTTCAAATAGCACCTCTA +
Preference number: 4 (lower is better)
Translates to: EFLSGCFQTALASWLGGTASGLS*FQIAPL
Trigger: TAGAGGTGCTATTTGAAACCAAGAAAGTCCTGAAGC...AGTGCCACCTAACCAGGAGGCCAGAGCGGTTTGAAAACATCCTGAAAGGAACTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000349874.9
ENST00000361511.8
CDS-3UTR CCA 90 bp ATGTTTTCAAACCGCTCTGGCCTCCTGGTTAGGTGGCACTCACGACAACACCACAGATTGTTACCTCTTTaGAGGGAGAAGTTTGTATGT +
Preference number: 4 (lower is better)
Translates to: MFSNRSGLLVRWHSRQHHRLLPL*REKFVC
Trigger: ACATACAAACTTCTCCCTCCAAAGAGGTAACAATCT...GTGGTGTTGTCGTGAGTGCCACCTAACCAGGAGGCCAGAGCGGTTTGAAAACAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000349874.9
ENST00000361511.8
CDS-3UTR CCA 90 bp GGTGTTGGAAAGGACTGTACTTGTGATTTGGGCCTAGCTGTTTCAGGGAGCCTGTCTGTTTGTTTCCGTTaGTGGTATCAGCACAGATTT +
Preference number: 4 (lower is better)
Translates to: GVGKDCTCDLGLAVSGSLSVCFR*WYQHRF
Trigger: AAATCTGTGCTGATACCACCAACGGAAACAAACAGA...CAGGCTCCCTGAAACAGCTAGGCCCAAATCACAAGTACAGTCCTTTCCAACACC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000349874.9
ENST00000361511.8
CDS-3UTR TCA 90 bp CCCATACTATGCATCTGTTTGTGGGATGAATTGGGATCTGCTTTTCTCTGCTACTCACACAGGTCTTATTaGAGAGGGTTTCCCAGTCTC +
Preference number: 4 (lower is better)
Translates to: PILCICLWDELGSAFLCYSHRSY*RGFPSL
Trigger: GAGACTGGGAAACCCTCTTCAATAAGACCTGTGTGA...GTAGCAGAGAAAAGCAGATCCCAATTCATCCCACAAACAGATGCATAGTATGGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000349874.9
ENST00000361511.8
CDS-3UTR TCA 90 bp GTCTCCCTCAGTCACTCACAGATGTCAAGCTTAGTAGTTTTCTCTTGTGCTGTAACCACCTTCCCATCATaGCAGATTTCATACCCTTCG +
Preference number: 4 (lower is better)
Translates to: VSLSHSQMSSLVVFSCAVTTFPS*QISYPS
Trigger: CGAAGGGTATGAAATCTGTCATGATGGGAAGGTGGT...TACAGCACAAGAGAAAACTACTAAGCTTGACATCTGTGAGTGACTGAGGGAGAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000361511.8
CDS-3UTR TCA 90 bp ACTTGTGATTTGGGCCTAGCTGTTTCAGGGAGCCTGAGGGAAGCTCTCATTTGTTGTTGGCAAGCTTATTaGCTTGGGAATCATCAATGT +
Preference number: 4 (lower is better)
Translates to: TCDLGLAVSGSLREALICCWQAY*LGNHQC
Trigger: ACATTGATGATTCCCAAGTCAATAAGCTTGCCAACA...ACAAATGAGAGCTTCCCTCAGGCTCCCTGAAACAGCTAGGCCCAAATCACAAGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000349874.9
ENST00000361511.8
ENST00000470157.1
CDS-3UTR TCA 90 bp ACCTGGTATTCCTCCTGTCTCCCTCAGTCACTCACAGATGTCAAGCTTAGTAGTTTTAGCCAAGGTTGGTaGCATCAGGTTTCATCAAGT +
Preference number: 4 (lower is better)
Translates to: TWYSSCLPQSLTDVKLSSFSQGW*HQVSSS
Trigger: ACTTGATGAAACCTGATGTCACCAACCTTGGCTAAA...ACTACTAAGCTTGACATCTGTGAGTGACTGAGGGAGACAGGAGGAATACCAGGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000349874.9
ENST00000361511.8
CDS-3UTR TCA 90 bp ACTTGTGATTTGGGCCTAGCTGTTTCAGGGAGCCTGAGGGAAGCTCTCATTTGTTTCTCTTGTGCTGTATaGGTTCCTTTCAGGATGTTT +
Preference number: 4 (lower is better)
Translates to: TCDLGLAVSGSLREALICFSCAV*VPFRMF
Trigger: AAACATCCTGAAAGGAACTCATACAGCACAAGAGAA...ACAAATGAGAGCTTCCCTCAGGCTCCCTGAAACAGCTAGGCCCAAATCACAAGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000349874.9
ENST00000361511.8
CDS-3UTR TCA 90 bp TGTACTTGTGATTTGGGCCTAGCTGTTTCAGGGAGCCTGAGGGAAGCTCTCATTTTCTCTTGTGCTGTATaGGTTCCTTTCAGGATGTTT +
Preference number: 4 (lower is better)
Translates to: CTCDLGLAVSGSLREALIFSCAV*VPFRMF
Trigger: AAACATCCTGAAAGGAACTCATACAGCACAAGAGAA...AATGAGAGCTTCCCTCAGGCTCCCTGAAACAGCTAGGCCCAAATCACAAGTACA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000349874.9
ENST00000361511.8
CDS-3UTR TCA 90 bp GGTGTTGGAAAGGACTGTACTTGTGATTTGGGCCTAGCTGTTTCAGGGAGCCTGAAAGACTTTATTCCATaGATAACCTGGTATTCCTCC +
Preference number: 4 (lower is better)
Translates to: GVGKDCTCDLGLAVSGSLKDFIP*ITWYSS
Trigger: GGAGGAATACCAGGTTATTCATGGAATAAAGTCTTT...CAGGCTCCCTGAAACAGCTAGGCCCAAATCACAAGTACAGTCCTTTCCAACACC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000349874.9
ENST00000361511.8
CDS-3UTR GCA 90 bp AGACTTTATTCCATGAATAACCTGGTATTCCTCCTGTCTCCCTCAGTCACTCACCAGCCTCTTCTCAAATaGTCTCTGGCTTTCCTACAG +
Preference number: 4 (lower is better)
Translates to: RLYSMNNLVFLLSPSVTHQPLLK*SLAFLQ
Trigger: CTGTAGGAAAGCCAGAGAGCATTTGAGAAGAGGCTG...GTGAGTGACTGAGGGAGACAGGAGGAATACCAGGTTATTCATGGAATAAAGTCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000349874.9
ENST00000361511.8
CDS-3UTR GCA 90 bp ACTTGTGATTTGGGCCTAGCTGTTTCAGGGAGCCTGAGGGAAGCTCTCATTTGTAGATTCTGTTTCTTCTaGTTGGCCAATGTAGAGGTT +
Preference number: 4 (lower is better)
Translates to: TCDLGLAVSGSLREALICRFCFF*LANVEV
Trigger: AACCTCTACATTGGCCAAGCAGAAGAAACAGAATCT...ACAAATGAGAGCTTCCCTCAGGCTCCCTGAAACAGCTAGGCCCAAATCACAAGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000349874.9
ENST00000361511.8
CDS-3UTR GCA 90 bp AGACTTTATTCCATGAATAACCTGGTATTCCTCCTGTCTCCCTCAGTCACTCACACAGAGTGTGAAAAGTaGCTCCCTTTAAGCTGCGAG +
Preference number: 4 (lower is better)
Translates to: RLYSMNNLVFLLSPSVTHTECEK*LPLSCE
Trigger: CTCGCAGCTTAAAGGGAGGCACTTTTCACACTCTGT...GTGAGTGACTGAGGGAGACAGGAGGAATACCAGGTTATTCATGGAATAAAGTCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000349874.9
ENST00000361511.8
CDS-3UTR GCA 90 bp CCTGGTATTCCTCCTGTCTCCCTCAGTCACTCACAGATGTCAAGCTTAGTAGTTAGGCTGAAAGCACGTTaGTTTAGTTACTTGGTACTG +
Preference number: 4 (lower is better)
Translates to: PGIPPVSLSHSQMSSLVVRLKAR*FSYLVL
Trigger: CAGTACCAAGTAACTAAAGCAACGTGCTTTCAGCCT...AACTACTAAGCTTGACATCTGTGAGTGACTGAGGGAGACAGGAGGAATACCAGG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000349874.9
ENST00000361511.8
CDS-3UTR CCA 90 bp CCTGGTATTCCTCCTGTCTCCCTCAGTCACTCACAGATGTCAAGCTTAGTAGTTTCTGATATCCCACCATaGATGACCAGGATTTCATTG +
Preference number: 4 (lower is better)
Translates to: PGIPPVSLSHSQMSSLVVSDIPP*MTRISL
Trigger: CAATGAAATCCTGGTCATCCATGGTGGGATATCAGA...AACTACTAAGCTTGACATCTGTGAGTGACTGAGGGAGACAGGAGGAATACCAGG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000349874.9
ENST00000361511.8
CDS-3UTR CCA 90 bp TGTACTTGTGATTTGGGCCTAGCTGTTTCAGGGAGCCTGAGGGAAGCTCTCATTGTTTGTTTCCGTTGGTaGTATCAGCACAGATTTCAT +
Preference number: 4 (lower is better)
Translates to: CTCDLGLAVSGSLREALIVCFRW*YQHRFH
Trigger: ATGAAATCTGTGCTGATACCACCAACGGAAACAAAC...AATGAGAGCTTCCCTCAGGCTCCCTGAAACAGCTAGGCCCAAATCACAAGTACA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000349874.9
ENST00000361511.8
CDS-3UTR CCA 90 bp TGTACTTGTGATTTGGGCCTAGCTGTTTCAGGGAGCCTGAGGGAAGCTCTCATTGGATATTCTGGAAGCTaGACATGTATTCAACGTTTC +
Preference number: 4 (lower is better)
Translates to: CTCDLGLAVSGSLREALIGYSGS*TCIQRF
Trigger: GAAACGTTGAATACATGTCCAGCTTCCAGAATATCC...AATGAGAGCTTCCCTCAGGCTCCCTGAAACAGCTAGGCCCAAATCACAAGTACA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000349874.9
ENST00000361511.8
CDS-3UTR CCA 90 bp TTCCTTTCAGGATGTTTTCAAACCGCTCTGGCCTCCTGGTTAGGTGGCACTCACAACCCAGTTTCTCACTaGCAATATGTAGGTACTAAT +
Preference number: 4 (lower is better)
Translates to: FLSGCFQTALASWLGGTHNPVSH*QYVGTN
Trigger: ATTAGTACCTACATATTGCCAGTGAGAAACTGGGTT...GTGAGTGCCACCTAACCAGGAGGCCAGAGCGGTTTGAAAACATCCTGAAAGGAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000349874.9
ENST00000361511.8
CDS-3UTR TCA 90 bp AAGATGGAAAGACTTTATTCCATGAATAACCTGGTATTCCTCCTGTCTCCCTCACACTTTGCTGGTTGTTaGCTCTTTCAGCCTGACCTG +
Preference number: 4 (lower is better)
Translates to: KMERLYSMNNLVFLLSPSHFAGC*LFQPDL
Trigger: CAGGTCAGGCTGAAAGAGTCAACAACCAGCAAAGTG...TGAGGGAGACAGGAGGAATACCAGGTTATTCATGGAATAAAGTCTTTCCATCTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000349874.9
ENST00000361511.8
CDS-3UTR TCA 90 bp TATGAGTTCCTTTCAGGATGTTTTCAAACCGCTCTGGCCTCCTGGTTAGGTGGCTCGCTTTCAAGAGACTaGTTTCTTAATTCTAGCTCT +
Preference number: 4 (lower is better)
Translates to: YEFLSGCFQTALASWLGGSLSRD*FLNSSS
Trigger: AGAGCTAGAATTAAGAAATCAGTCTCTTGAAAGCGA...GCCACCTAACCAGGAGGCCAGAGCGGTTTGAAAACATCCTGAAAGGAACTCATA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000349874.9
ENST00000361511.8
CDS-3UTR TCA 90 bp TCCAACCCAGTTTCTCACTGGCAATATGTAGGTACTAATGCTGAAACCAAATCCCTTTGGCGAAGAGGCTaGAAGCACGTTGCTTTAGTT +
Preference number: 4 (lower is better)
Translates to: SNPVSHWQYVGTNAETKSLWRRG*KHVALV
Trigger: AACTAAAGCAACGTGCTTTCAGCCTCTTCGCCAAAG...GGATTTGGTTTCAGCATTAGTACCTACATATTGCCAGTGAGAAACTGGGTTGGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000349874.9
ENST00000361511.8
CDS-3UTR TCA 90 bp CCTGGTATTCCTCCTGTCTCCCTCAGTCACTCACAGATGTCAAGCTTAGTAGTTTCAACTAGAGTAGAATaGGCCTCTTGTACAGGTTTT +
Preference number: 4 (lower is better)
Translates to: PGIPPVSLSHSQMSSLVVSTRVE*ASCTGF
Trigger: AAAACCTGTACAAGAGGCTCATTCTACTCTAGTTGA...AACTACTAAGCTTGACATCTGTGAGTGACTGAGGGAGACAGGAGGAATACCAGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000349874.9
ENST00000361511.8
CDS-3UTR TCA 90 bp ATTCCTCCTGTCTCCCTCAGTCACTCACAGATGTCAAGCTTAGTAGTTTTCTCTAAAGGACTGTACTTGTaGTTTGGGCCTAGCTGTTTC +
Preference number: 4 (lower is better)
Translates to: IPPVSLSHSQMSSLVVFSKGLYL*FGPSCF
Trigger: GAAACAGCTAGGCCCAAATCACAAGTACAGTCCTTT...AGAGAAAACTACTAAGCTTGACATCTGTGAGTGACTGAGGGAGACAGGAGGAAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000349874.9
ENST00000361511.8
CDS-3UTR TCA 90 bp TGTACTTGTGATTTGGGCCTAGCTGTTTCAGGGAGCCTGAGGGAAGCTCTCATTAAAGACTTTATTCCATaGATAACCTGGTATTCCTCC +
Preference number: 4 (lower is better)
Translates to: CTCDLGLAVSGSLREALIKDFIP*ITWYSS
Trigger: GGAGGAATACCAGGTTATTCATGGAATAAAGTCTTT...AATGAGAGCTTCCCTCAGGCTCCCTGAAACAGCTAGGCCCAAATCACAAGTACA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000349874.9
ENST00000361511.8
CDS-3UTR GCA 90 bp CCTGGTATTCCTCCTGTCTCCCTCAGTCACTCACAGATGTCAAGCTTAGTAGTTCCTAGATCTTCACTTTaGTGGTTGTTGACTCTTTCA +
Preference number: 4 (lower is better)
Translates to: PGIPPVSLSHSQMSSLVVPRSSL*WLLTLS
Trigger: TGAAAGAGTCAACAACCAGCAAAGTGAAGATCTAGG...AACTACTAAGCTTGACATCTGTGAGTGACTGAGGGAGACAGGAGGAATACCAGG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000349874.9
ENST00000361511.8
CDS-3UTR GCA 90 bp TTCCTTTCAGGATGTTTTCAAACCGCTCTGGCCTCCTGGTTAGGTGGCACTCACTTTGATTCTTCCATGTaGATTAAAAGTCACACCTAC +
Preference number: 4 (lower is better)
Translates to: FLSGCFQTALASWLGGTHFDSSM*IKSHTY
Trigger: GTAGGTGTGACTTTTAATGCACATGGAAGAATCAAA...GTGAGTGCCACCTAACCAGGAGGCCAGAGCGGTTTGAAAACATCCTGAAAGGAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000349874.9
ENST00000361511.8
CDS-3UTR GCA 90 bp TGTACTTGTGATTTGGGCCTAGCTGTTTCAGGGAGCCTGAGGGAAGCTCTCATTTGTAAGCTCCTCGATTaGTGCCTTCTTCATAATAAT +
Preference number: 4 (lower is better)
Translates to: CTCDLGLAVSGSLREALICKLLD*CLLHNN
Trigger: ATTATTATGAAGAAGGCAGCAATCGAGGAGCTTACA...AATGAGAGCTTCCCTCAGGCTCCCTGAAACAGCTAGGCCCAAATCACAAGTACA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000349874.9
ENST00000361511.8
CDS-3UTR GCA 90 bp ACTAGGTCCAACCCAGTTTCTCACTGGCAATATGTAGGTACTAATGCTGAAACCCCAAAATGTTCTCCATaGAAAAAGCCCACTGGCTCA +
Preference number: 4 (lower is better)
Translates to: TRSNPVSHWQYVGTNAETPKCSP*KKPTGS
Trigger: TGAGCCAGTGGGCTTTTTGCATGGAGAACATTTTGG...GGTTTCAGCATTAGTACCTACATATTGCCAGTGAGAAACTGGGTTGGACCTAGT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000349874.9
ENST00000361511.8
CDS-3UTR CCA 90 bp ATTCCTCCTGTCTCCCTCAGTCACTCACAGATGTCAAGCTTAGTAGTTTTCTCTACCATTATAGGAGTCTaGGACATCTATCGAGTCCAC +
Preference number: 4 (lower is better)
Translates to: IPPVSLSHSQMSSLVVFSTIIGV*DIYRVH
Trigger: GTGGACTCGATAGATGTCCCAGACTCCTATAATGGT...AGAGAAAACTACTAAGCTTGACATCTGTGAGTGACTGAGGGAGACAGGAGGAAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000349874.9
ENST00000361511.8
CDS-3UTR CCA 90 bp CCTGGTATTCCTCCTGTCTCCCTCAGTCACTCACAGATGTCAAGCTTAGTAGTTTCAATGCGGATATTCTaGAAGCTGGACATGTATTCA +
Preference number: 4 (lower is better)
Translates to: PGIPPVSLSHSQMSSLVVSMRIF*KLDMYS
Trigger: TGAATACATGTCCAGCTTCCAGAATATCCGCATTGA...AACTACTAAGCTTGACATCTGTGAGTGACTGAGGGAGACAGGAGGAATACCAGG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000349874.9
ENST00000361511.8
CDS-3UTR CCA 90 bp ACTTGTGATTTGGGCCTAGCTGTTTCAGGGAGCCTGAGGGAAGCTCTCATTTGTAACCCAGTTTCTCACTaGCAATATGTAGGTACTAAT +
Preference number: 4 (lower is better)
Translates to: TCDLGLAVSGSLREALICNPVSH*QYVGTN
Trigger: ATTAGTACCTACATATTGCCAGTGAGAAACTGGGTT...ACAAATGAGAGCTTCCCTCAGGCTCCCTGAAACAGCTAGGCCCAAATCACAAGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000349874.9
ENST00000361511.8
CDS-3UTR TCA 90 bp AAGATGGAAAGACTTTATTCCATGAATAACCTGGTATTCCTCCTGTCTCCCTCATCACACAGGTCTTATTaGAGAGGGTTTCCCAGTCTC +
Preference number: 4 (lower is better)
Translates to: KMERLYSMNNLVFLLSPSSHRSY*RGFPSL
Trigger: GAGACTGGGAAACCCTCTTCAATAAGACCTGTGTGA...TGAGGGAGACAGGAGGAATACCAGGTTATTCATGGAATAAAGTCTTTCCATCTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000349874.9
ENST00000361511.8
CDS-3UTR TCA 90 bp AGTTTTCTCTTGTGCTGTATGAGTTCCTTTCAGGATGTTTTCAAACCGCTCTGGCAATATCCGTACAAGTaGGAGGAAATTGTAGCCGAG +
Preference number: 4 (lower is better)
Translates to: SFLLCCMSSFQDVFKPLWQYPYK*EEIVAE
Trigger: CTCGGCTACAATTTCCTCTCACTTGTACGGATATTG...CCAGAGCGGTTTGAAAACATCCTGAAAGGAACTCATACAGCACAAGAGAAAACT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000349874.9
ENST00000361511.8
CDS-3UTR TCA 90 bp ATTCCTCCTGTCTCCCTCAGTCACTCACAGATGTCAAGCTTAGTAGTTTTCTCTATATCCCACCATGGATaGCCAGGATTTCATTGTCAA +
Preference number: 4 (lower is better)
Translates to: IPPVSLSHSQMSSLVVFSISHHG*PGFHCQ
Trigger: TTGACAATGAAATCCTGGTCATCCATGGTGGGATAT...AGAGAAAACTACTAAGCTTGACATCTGTGAGTGACTGAGGGAGACAGGAGGAAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000349874.9
ENST00000361511.8
CDS-3UTR TCA 90 bp GTCTCCCTCAGTCACTCACAGATGTCAAGCTTAGTAGTTTTCTCTTGTGCTGTATACCAGAACATAGTTTaGTGTAAGCTCCTCGATTGC +
Preference number: 4 (lower is better)
Translates to: VSLSHSQMSSLVVFSCAVYQNIV*CKLLDC
Trigger: GCAATCGAGGAGCTTACATCAAACTATGTTCTGGTA...TACAGCACAAGAGAAAACTACTAAGCTTGACATCTGTGAGTGACTGAGGGAGAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000349874.9
ENST00000361511.8
CDS-3UTR TCA 90 bp AAGATGGAAAGACTTTATTCCATGAATAACCTGGTATTCCTCCTGTCTCCCTCACTTTGGCGAAGAGGCTaGAAGCACGTTGCTTTAGTT +
Preference number: 4 (lower is better)
Translates to: KMERLYSMNNLVFLLSPSLWRRG*KHVALV
Trigger: AACTAAAGCAACGTGCTTTCAGCCTCTTCGCCAAAG...TGAGGGAGACAGGAGGAATACCAGGTTATTCATGGAATAAAGTCTTTCCATCTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000349874.9
ENST00000361511.8
CDS-3UTR TCA 90 bp ACTAGGTCCAACCCAGTTTCTCACTGGCAATATGTAGGTACTAATGCTGAAACCGATTTTCTGTGGTCTTaGAGTTGGAAAGCACGAGTA +
Preference number: 4 (lower is better)
Translates to: TRSNPVSHWQYVGTNAETDFLWS*SWKARV
Trigger: TACTCGTGCTTTCCAACTTCAAGACCACAGAAAATC...GGTTTCAGCATTAGTACCTACATATTGCCAGTGAGAAACTGGGTTGGACCTAGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000349874.9
ENST00000361511.8
CDS-3UTR GCA 90 bp TCCAACCCAGTTTCTCACTGGCAATATGTAGGTACTAATGCTGAAACCAAATCCGAGGGCTTGTGTGTTTaGAAAATTCAAGCTTCAGCC +
Preference number: 4 (lower is better)
Translates to: SNPVSHWQYVGTNAETKSEGLCV*KIQASA
Trigger: GGCTGAAGCTTGAATTTTGCAAACACACAAGCCCTC...GGATTTGGTTTCAGCATTAGTACCTACATATTGCCAGTGAGAAACTGGGTTGGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000349874.9
ENST00000361511.8
CDS-3UTR GCA 90 bp GAAAGACTTTATTCCATGAATAACCTGGTATTCCTCCTGTCTCCCTCAGTCACTCCAAAATGTTCTCCATaGAAAAAGCCCACTGGCTCA +
Preference number: 4 (lower is better)
Translates to: ERLYSMNNLVFLLSPSVTPKCSP*KKPTGS
Trigger: TGAGCCAGTGGGCTTTTTGCATGGAGAACATTTTGG...AGTGACTGAGGGAGACAGGAGGAATACCAGGTTATTCATGGAATAAAGTCTTTC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000349874.9
ENST00000361511.8
CDS-3UTR CCA 90 bp CCCATACTATGCATCTGTTTGTGGGATGAATTGGGATCTGCTTTTCTCTGCTACATGTGTCAGATCTCCTaGTTTTCGTTGAAGAACTGC +
Preference number: 4 (lower is better)
Translates to: PILCICLWDELGSAFLCYMCQIS*FSLKNC
Trigger: GCAGTTCTTCAACGAAAACCAGGAGATCTGACACAT...GTAGCAGAGAAAAGCAGATCCCAATTCATCCCACAAACAGATGCATAGTATGGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000349874.9
ENST00000361511.8
CDS-3UTR CCA 90 bp TACTATGCATCTGTTTGTGGGATGAATTGGGATCTGCTTTTCTCTGCTACTGACACCATTATAGGAGTCTaGGACATCTATCGAGTCCAC +
Preference number: 4 (lower is better)
Translates to: YYASVCGMNWDLLFSATDTIIGV*DIYRVH
Trigger: GTGGACTCGATAGATGTCCCAGACTCCTATAATGGT...GTCAGTAGCAGAGAAAAGCAGATCCCAATTCATCCCACAAACAGATGCATAGTA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000349874.9
ENST00000361511.8
CDS-3UTR CCA 90 bp GTCTCCCTCAGTCACTCACAGATGTCAAGCTTAGTAGTTTTCTCTTGTGCTGTATTCGAGTCAGTGTCATaGTCTCTGTTTGTTTCCGTT +
Preference number: 4 (lower is better)
Translates to: VSLSHSQMSSLVVFSCAVFESVS*SLFVSV
Trigger: AACGGAAACAAACAGAGACCATGACACTGACTCGAA...TACAGCACAAGAGAAAACTACTAAGCTTGACATCTGTGAGTGACTGAGGGAGAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000349874.9
ENST00000361511.8
CDS-3UTR CCA 90 bp ACTTGTGATTTGGGCCTAGCTGTTTCAGGGAGCCTGAGGGAAGCTCTCATTTGTTTAGTTACTTGGTACTaGAAAAATCGAGGAGTTGTA +
Preference number: 4 (lower is better)
Translates to: TCDLGLAVSGSLREALICLVTWY*KNRGVV
Trigger: TACAACTCCTCGATTTTTCCAGTACCAAGTAACTAA...ACAAATGAGAGCTTCCCTCAGGCTCCCTGAAACAGCTAGGCCCAAATCACAAGT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000349874.9
ENST00000361511.8
CDS-3UTR CCA 90 bp GTCTCCCTCAGTCACTCACAGATGTCAAGCTTAGTAGTTTTCTCTTGTGCTGTACTATGCATCTGTTTGTaGGATGAATTGGGATCTGCT +
Preference number: 4 (lower is better)
Translates to: VSLSHSQMSSLVVFSCAVLCICL*DELGSA
Trigger: AGCAGATCCCAATTCATCCCACAAACAGATGCATAG...TACAGCACAAGAGAAAACTACTAAGCTTGACATCTGTGAGTGACTGAGGGAGAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000349874.9
ENST00000361511.8
CDS-3UTR TCA 90 bp AGTTTTCTCTTGTGCTGTATGAGTTCCTTTCAGGATGTTTTCAAACCGCTCTGGGGAGAAGTTTGTATGTaGGTGAAATTCGGCATTTGC +
Preference number: 4 (lower is better)
Translates to: SFLLCCMSSFQDVFKPLWGEVCM*VKFGIC
Trigger: GCAAATGCCGAATTTCACTCACATACAAACTTCTCC...CCAGAGCGGTTTGAAAACATCCTGAAAGGAACTCATACAGCACAAGAGAAAACT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000349874.9
ENST00000361511.8
CDS-3UTR TCA 90 bp TCCAACCCAGTTTCTCACTGGCAATATGTAGGTACTAATGCTGAAACCAAATCCGGAGAAGTTTGTATGTaGGTGAAATTCGGCATTTGC +
Preference number: 4 (lower is better)
Translates to: SNPVSHWQYVGTNAETKSGEVCM*VKFGIC
Trigger: GCAAATGCCGAATTTCACTCACATACAAACTTCTCC...GGATTTGGTTTCAGCATTAGTACCTACATATTGCCAGTGAGAAACTGGGTTGGA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000349874.9
ENST00000361511.8
CDS-3UTR TCA 90 bp CCCATACTATGCATCTGTTTGTGGGATGAATTGGGATCTGCTTTTCTCTGCTACGCAAAATTTCTTTCGTaGAGCCATACCTCAGATTCA +
Preference number: 4 (lower is better)
Translates to: PILCICLWDELGSAFLCYAKFLS*SHTSDS
Trigger: TGAATCTGAGGTATGGCTTCACGAAAGAAATTTTGC...GTAGCAGAGAAAAGCAGATCCCAATTCATCCCACAAACAGATGCATAGTATGGG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000349874.9
ENST00000361511.8
CDS-3UTR TCA 90 bp ATTCCTCCTGTCTCCCTCAGTCACTCACAGATGTCAAGCTTAGTAGTTTTCTCTCACAGAAAGTTTTCCTaGTTTTCTGTGGTCTTGAAG +
Preference number: 4 (lower is better)
Translates to: IPPVSLSHSQMSSLVVFSHRKFS*FSVVLK
Trigger: CTTCAAGACCACAGAAAATCAGGAAAACTTTCTGTG...AGAGAAAACTACTAAGCTTGACATCTGTGAGTGACTGAGGGAGACAGGAGGAAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000349874.9
ENST00000361511.8
CDS-3UTR GCA 90 bp ATTCCTCCTGTCTCCCTCAGTCACTCACAGATGTCAAGCTTAGTAGTTTTCTCTCCTAGATCTTCACTTTaGTGGTTGTTGACTCTTTCA +
Preference number: 4 (lower is better)
Translates to: IPPVSLSHSQMSSLVVFSPRSSL*WLLTLS
Trigger: TGAAAGAGTCAACAACCAGCAAAGTGAAGATCTAGG...AGAGAAAACTACTAAGCTTGACATCTGTGAGTGACTGAGGGAGACAGGAGGAAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000349874.9
ENST00000361511.8
CDS-3UTR GCA 90 bp GTCTCCCTCAGTCACTCACAGATGTCAAGCTTAGTAGTTTTCTCTTGTGCTGTAAGATTCTGTTTCTTCTaGTTGGCCAATGTAGAGGTT +
Preference number: 4 (lower is better)
Translates to: VSLSHSQMSSLVVFSCAVRFCFF*LANVEV
Trigger: AACCTCTACATTGGCCAAGCAGAAGAAACAGAATCT...TACAGCACAAGAGAAAACTACTAAGCTTGACATCTGTGAGTGACTGAGGGAGAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000349874.9
ENST00000361511.8
CDS-3UTR GCA 90 bp GAAAGACTTTATTCCATGAATAACCTGGTATTCCTCCTGTCTCCCTCAGTCACTACACCTACTTTATTGTaGTTCGAGTCAGTGTCATGG +
Preference number: 4 (lower is better)
Translates to: ERLYSMNNLVFLLSPSVTTPTLL*FESVSW
Trigger: CCATGACACTGACTCGAAGCACAATAAAGTAGGTGT...AGTGACTGAGGGAGACAGGAGGAATACCAGGTTATTCATGGAATAAAGTCTTTC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000349874.9
ENST00000361511.8
CDS-3UTR GCA 90 bp TCCAACCCAGTTTCTCACTGGCAATATGTAGGTACTAATGCTGAAACCAAATCCACACCTACTTTATTGTaGTTCGAGTCAGTGTCATGG +
Preference number: 4 (lower is better)
Translates to: SNPVSHWQYVGTNAETKSTPTLL*FESVSW
Trigger: CCATGACACTGACTCGAAGCACAATAAAGTAGGTGT...GGATTTGGTTTCAGCATTAGTACCTACATATTGCCAGTGAGAAACTGGGTTGGA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000349874.9
ENST00000361511.8
CDS-3UTR GCA 90 bp CCTGGTATTCCTCCTGTCTCCCTCAGTCACTCACAGATGTCAAGCTTAGTAGTTTTTGATTCTTCCATGTaGATTAAAAGTCACACCTAC +
Preference number: 4 (lower is better)
Translates to: PGIPPVSLSHSQMSSLVVFDSSM*IKSHTY
Trigger: GTAGGTGTGACTTTTAATGCACATGGAAGAATCAAA...AACTACTAAGCTTGACATCTGTGAGTGACTGAGGGAGACAGGAGGAATACCAGG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000349874.9
ENST00000361511.8
CDS-3UTR GCA 90 bp GAAAGACTTTATTCCATGAATAACCTGGTATTCCTCCTGTCTCCCTCAGTCACTAGGCTGAAAGCACGTTaGTTTAGTTACTTGGTACTG +
Preference number: 4 (lower is better)
Translates to: ERLYSMNNLVFLLSPSVTRLKAR*FSYLVL
Trigger: CAGTACCAAGTAACTAAAGCAACGTGCTTTCAGCCT...AGTGACTGAGGGAGACAGGAGGAATACCAGGTTATTCATGGAATAAAGTCTTTC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000349874.9
ENST00000361511.8
CDS-3UTR GCA 90 bp AGTTTTCTCTTGTGCTGTATGAGTTCCTTTCAGGATGTTTTCAAACCGCTCTGGGTACAGGTTTTTCAATaGGGATATTCTGGAAGCTGG +
Preference number: 4 (lower is better)
Translates to: SFLLCCMSSFQDVFKPLWVQVFQ*GYSGSW
Trigger: CCAGCTTCCAGAATATCCGCATTGAAAAACCTGTAC...CCAGAGCGGTTTGAAAACATCCTGAAAGGAACTCATACAGCACAAGAGAAAACT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000349874.9
ENST00000361511.8
CDS-3UTR GCA 90 bp ATTCCTCCTGTCTCCCTCAGTCACTCACAGATGTCAAGCTTAGTAGTTTTCTCTCCAAAACCCATACTATaGATCTGTTTGTGGGATGAA +
Preference number: 4 (lower is better)
Translates to: IPPVSLSHSQMSSLVVFSPKPIL*ICLWDE
Trigger: TTCATCCCACAAACAGATGCATAGTATGGGTTTTGG...AGAGAAAACTACTAAGCTTGACATCTGTGAGTGACTGAGGGAGACAGGAGGAAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000349874.9
ENST00000361511.8
CDS-3UTR CCA 90 bp AGTTTTCTCTTGTGCTGTATGAGTTCCTTTCAGGATGTTTTCAAACCGCTCTGGATGTGTCAGATCTCCTaGTTTTCGTTGAAGAACTGC +
Preference number: 4 (lower is better)
Translates to: SFLLCCMSSFQDVFKPLWMCQIS*FSLKNC
Trigger: GCAGTTCTTCAACGAAAACCAGGAGATCTGACACAT...CCAGAGCGGTTTGAAAACATCCTGAAAGGAACTCATACAGCACAAGAGAAAACT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000349874.9
ENST00000361511.8
CDS-3UTR CCA 90 bp ATTCCTCCTGTCTCCCTCAGTCACTCACAGATGTCAAGCTTAGTAGTTTTCTCTGTGGATAACTGCATTTaGCCTTGTTCATCAGCATAT +
Preference number: 4 (lower is better)
Translates to: IPPVSLSHSQMSSLVVFSVDNCI*PCSSAY
Trigger: ATATGCTGATGAACAAGGCCAAATGCAGTTATCCAC...AGAGAAAACTACTAAGCTTGACATCTGTGAGTGACTGAGGGAGACAGGAGGAAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000349874.9
ENST00000361511.8
CDS-3UTR CCA 90 bp TCCAACCCAGTTTCTCACTGGCAATATGTAGGTACTAATGCTGAAACCAAATCCTCAAGTGCAGGTCATTaGGGTAGACAAGAAAACTCA +
Preference number: 4 (lower is better)
Translates to: SNPVSHWQYVGTNAETKSSSAGH*GRQENS
Trigger: TGAGTTTTCTTGTCTACCCCAATGACCTGCACTTGA...GGATTTGGTTTCAGCATTAGTACCTACATATTGCCAGTGAGAAACTGGGTTGGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000349874.9
ENST00000361511.8
CDS-3UTR CCA 90 bp GAAAGACTTTATTCCATGAATAACCTGGTATTCCTCCTGTCTCCCTCAGTCACTTCAAGTGCAGGTCATTaGGGTAGACAAGAAAACTCA +
Preference number: 4 (lower is better)
Translates to: ERLYSMNNLVFLLSPSVTSSAGH*GRQENS
Trigger: TGAGTTTTCTTGTCTACCCCAATGACCTGCACTTGA...AGTGACTGAGGGAGACAGGAGGAATACCAGGTTATTCATGGAATAAAGTCTTTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000349874.9
ENST00000361511.8
CDS-3UTR CCA 90 bp GTCTCCCTCAGTCACTCACAGATGTCAAGCTTAGTAGTTTTCTCTTGTGCTGTAATCATAAAATCTTCGTaGTTCCCTCTGTTCAAGTGC +
Preference number: 4 (lower is better)
Translates to: VSLSHSQMSSLVVFSCAVIIKSS*FPLFKC
Trigger: GCACTTGAACAGAGGGAACCACGAAGATTTTATGAT...TACAGCACAAGAGAAAACTACTAAGCTTGACATCTGTGAGTGACTGAGGGAGAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000349874.9
ENST00000361511.8
CDS-3UTR CCA 90 bp ACTAGGTCCAACCCAGTTTCTCACTGGCAATATGTAGGTACTAATGCTGAAACCGTTTGTTTCCGTTGGTaGTATCAGCACAGATTTCAT +
Preference number: 4 (lower is better)
Translates to: TRSNPVSHWQYVGTNAETVCFRW*YQHRFH
Trigger: ATGAAATCTGTGCTGATACCACCAACGGAAACAAAC...GGTTTCAGCATTAGTACCTACATATTGCCAGTGAGAAACTGGGTTGGACCTAGT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000349874.9
ENST00000361511.8
CDS-3UTR CCA 90 bp TACTATGCATCTGTTTGTGGGATGAATTGGGATCTGCTTTTCTCTGCTACTGACATGCAAAAAGCCCACTaGCTCACAGAAAGTTTTCCT +
Preference number: 4 (lower is better)
Translates to: YYASVCGMNWDLLFSATDMQKAH*LTESFP
Trigger: AGGAAAACTTTCTGTGAGCCAGTGGGCTTTTTGCAT...GTCAGTAGCAGAGAAAAGCAGATCCCAATTCATCCCACAAACAGATGCATAGTA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000349874.9
ENST00000361511.8
CDS-3UTR TCA 90 bp AAGATGGAAAGACTTTATTCCATGAATAACCTGGTATTCCTCCTGTCTCCCTCATACCAGAACATAGTTTaGTGTAAGCTCCTCGATTGC +
Preference number: 4 (lower is better)
Translates to: KMERLYSMNNLVFLLSPSYQNIV*CKLLDC
Trigger: GCAATCGAGGAGCTTACATCAAACTATGTTCTGGTA...TGAGGGAGACAGGAGGAATACCAGGTTATTCATGGAATAAAGTCTTTCCATCTT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000349874.9
ENST00000361511.8
CDS-3UTR TCA 90 bp AGTTTTCTCTTGTGCTGTATGAGTTCCTTTCAGGATGTTTTCAAACCGCTCTGGTGTTGGCAAGCTTATTaGCTTGGGAATCATCAATGT +
Preference number: 4 (lower is better)
Translates to: SFLLCCMSSFQDVFKPLWCWQAY*LGNHQC
Trigger: ACATTGATGATTCCCAAGTCAATAAGCTTGCCAACA...CCAGAGCGGTTTGAAAACATCCTGAAAGGAACTCATACAGCACAAGAGAAAACT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000349874.9
ENST00000361511.8
CDS-3UTR TCA 90 bp TACTATGCATCTGTTTGTGGGATGAATTGGGATCTGCTTTTCTCTGCTACTGACTGTTGGCAAGCTTATTaGCTTGGGAATCATCAATGT +
Preference number: 4 (lower is better)
Translates to: YYASVCGMNWDLLFSATDCWQAY*LGNHQC
Trigger: ACATTGATGATTCCCAAGTCAATAAGCTTGCCAACA...GTCAGTAGCAGAGAAAAGCAGATCCCAATTCATCCCACAAACAGATGCATAGTA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000349874.9
ENST00000361511.8
CDS-3UTR CCA 90 bp AGACTTTATTCCATGAATAACCTGGTATTCCTCCTGTCTCCCTCAGTCACTCACAGATTGTTACCTCTTTaGAGGGAGAAGTTTGTATGT +
Preference number: 4 (lower is better)
Translates to: RLYSMNNLVFLLSPSVTHRLLPL*REKFVC
Trigger: ACATACAAACTTCTCCCTCCAAAGAGGTAACAATCT...GTGAGTGACTGAGGGAGACAGGAGGAATACCAGGTTATTCATGGAATAAAGTCT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000349874.9
ENST00000361511.8
CDS-3UTR CCA 90 bp AGTTTTCTCTTGTGCTGTATGAGTTCCTTTCAGGATGTTTTCAAACCGCTCTGGGTAAATTCAAGTCTGTaGTCTCTGATATCCCACCAT +
Preference number: 4 (lower is better)
Translates to: SFLLCCMSSFQDVFKPLWVNSSL*SLISHH
Trigger: ATGGTGGGATATCAGAGACCACAGACTTGAATTTAC...CCAGAGCGGTTTGAAAACATCCTGAAAGGAACTCATACAGCACAAGAGAAAACT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000349874.9
ENST00000361511.8
CDS-3UTR CCA 90 bp AAGATGGAAAGACTTTATTCCATGAATAACCTGGTATTCCTCCTGTCTCCCTCATTCCTCTCTACACGGTaGAGTAAATTCAAGTCTGTG +
Preference number: 4 (lower is better)
Translates to: KMERLYSMNNLVFLLSPSFLSTR*SKFKSV
Trigger: CACAGACTTGAATTTACTCCACCGTGTAGAGAGGAA...TGAGGGAGACAGGAGGAATACCAGGTTATTCATGGAATAAAGTCTTTCCATCTT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000349874.9
ENST00000361511.8
CDS-3UTR CCA 90 bp TCCAACCCAGTTTCTCACTGGCAATATGTAGGTACTAATGCTGAAACCAAATCCGGATATTCTGGAAGCTaGACATGTATTCAACGTTTC +
Preference number: 4 (lower is better)
Translates to: SNPVSHWQYVGTNAETKSGYSGS*TCIQRF
Trigger: GAAACGTTGAATACATGTCCAGCTTCCAGAATATCC...GGATTTGGTTTCAGCATTAGTACCTACATATTGCCAGTGAGAAACTGGGTTGGA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000349874.9
ENST00000361511.8
CDS-3UTR CCA 90 bp TCCAACCCAGTTTCTCACTGGCAATATGTAGGTACTAATGCTGAAACCAAATCCTCAATGCGGATATTCTaGAAGCTGGACATGTATTCA +
Preference number: 4 (lower is better)
Translates to: SNPVSHWQYVGTNAETKSSMRIF*KLDMYS
Trigger: TGAATACATGTCCAGCTTCCAGAATATCCGCATTGA...GGATTTGGTTTCAGCATTAGTACCTACATATTGCCAGTGAGAAACTGGGTTGGA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000349874.9
ENST00000361511.8
CDS-3UTR TCA 90 bp TCCAACCCAGTTTCTCACTGGCAATATGTAGGTACTAATGCTGAAACCAAATCCTCGCTTTCAAGAGACTaGTTTCTTAATTCTAGCTCT +
Preference number: 4 (lower is better)
Translates to: SNPVSHWQYVGTNAETKSSLSRD*FLNSSS
Trigger: AGAGCTAGAATTAAGAAATCAGTCTCTTGAAAGCGA...GGATTTGGTTTCAGCATTAGTACCTACATATTGCCAGTGAGAAACTGGGTTGGA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000349874.9
ENST00000361511.8
CDS-3UTR TCA 90 bp TCCAACCCAGTTTCTCACTGGCAATATGTAGGTACTAATGCTGAAACCAAATCCAAGTTTGTATGTGAGTaGAATTCGGCATTTGCTTCA +
Preference number: 4 (lower is better)
Translates to: SNPVSHWQYVGTNAETKSKFVCE*NSAFAS
Trigger: TGAAGCAAATGCCGAATTTCACTCACATACAAACTT...GGATTTGGTTTCAGCATTAGTACCTACATATTGCCAGTGAGAAACTGGGTTGGA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000349874.9
ENST00000361511.8
CDS-3UTR TCA 90 bp AAGATGGAAAGACTTTATTCCATGAATAACCTGGTATTCCTCCTGTCTCCCTCATCAACTAGAGTAGAATaGGCCTCTTGTACAGGTTTT +
Preference number: 4 (lower is better)
Translates to: KMERLYSMNNLVFLLSPSSTRVE*ASCTGF
Trigger: AAAACCTGTACAAGAGGCTCATTCTACTCTAGTTGA...TGAGGGAGACAGGAGGAATACCAGGTTATTCATGGAATAAAGTCTTTCCATCTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000349874.9
ENST00000361511.8
CDS-3UTR CCA 90 bp AGACTTTATTCCATGAATAACCTGGTATTCCTCCTGTCTCCCTCAGTCACTCACTCATTAGGATCTCTATaGAATTCTTTCCTCGATCTA +
Preference number: 4 (lower is better)
Translates to: RLYSMNNLVFLLSPSVTHSLGSL*NSFLDL
Trigger: TAGATCGAGGAAAGAATTCCATAGAGATCCTAATGA...GTGAGTGACTGAGGGAGACAGGAGGAATACCAGGTTATTCATGGAATAAAGTCT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000349874.9
ENST00000361511.8
CDS-3UTR CCA 90 bp AAGATGGAAAGACTTTATTCCATGAATAACCTGGTATTCCTCCTGTCTCCCTCAGTAAATTCAAGTCTGTaGTCTCTGATATCCCACCAT +
Preference number: 4 (lower is better)
Translates to: KMERLYSMNNLVFLLSPSVNSSL*SLISHH
Trigger: ATGGTGGGATATCAGAGACCACAGACTTGAATTTAC...TGAGGGAGACAGGAGGAATACCAGGTTATTCATGGAATAAAGTCTTTCCATCTT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000349874.9
ENST00000361511.8
CDS-3UTR CCA 90 bp GAAAGACTTTATTCCATGAATAACCTGGTATTCCTCCTGTCTCCCTCAGTCACTGTTGCTTTAGTTACTTaGTACTGGAAAAATCGAGGA +
Preference number: 4 (lower is better)
Translates to: ERLYSMNNLVFLLSPSVTVALVT*YWKNRG
Trigger: TCCTCGATTTTTCCAGTACCAAGTAACTAAAGCAAC...AGTGACTGAGGGAGACAGGAGGAATACCAGGTTATTCATGGAATAAAGTCTTTC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000349874.9
ENST00000361511.8
CDS-3UTR CCA 90 bp GATGTCAAGCTTAGTAGTTTTCTCTTGTGCTGTATGAGTTCCTTTCAGGATGTTATCATAAAATCTTCGTaGTTCCCTCTGTTCAAGTGC +
Preference number: 4 (lower is better)
Translates to: DVKLSSFLLCCMSSFQDVIIKSS*FPLFKC
Trigger: GCACTTGAACAGAGGGAACCACGAAGATTTTATGAT...AACATCCTGAAAGGAACTCATACAGCACAAGAGAAAACTACTAAGCTTGACATC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000349874.9
ENST00000361511.8
CDS-3UTR CAA 90 bp ATGTTTTCAAACCGCTCTGGCCTCCTGGTTAGGTGGCACTCACGACAACACCACGGTGAGGGCATAGTGTaGTCTGGCCTTCAGTCGAGC +
Preference number: 5 (lower is better)
Translates to: MFSNRSGLLVRWHSRQHHGEGIV*SGLQSS
Trigger: GCTCGACTGAAGGCCAGACAACACTATGCCCTCACC...GTGGTGTTGTCGTGAGTGCCACCTAACCAGGAGGCCAGAGCGGTTTGAAAACAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000349874.9
ENST00000361511.8
CDS-3UTR CAA 90 bp TCAGGATGTTTTCAAACCGCTCTGGCCTCCTGGTTAGGTGGCACTCACGACAACCCTTTCCCTCGAGGTTaGATCAGGTCCACACAGGTT +
Preference number: 5 (lower is better)
Translates to: SGCFQTALASWLGGTHDNPFPRG*IRSTQV
Trigger: AACCTGTGTGGACCTGATCAAACCTCGAGGGAAAGG...GTTGTCGTGAGTGCCACCTAACCAGGAGGCCAGAGCGGTTTGAAAACATCCTGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000349874.9
ENST00000361511.8
CDS-3UTR CAA 90 bp CTGGCCTCCTGGTTAGGTGGCACTCACGACAACACCACTAGGTCCAACCCAGTTCATAGTATCCACTCTTaGGCGAAGAGGCTGAAAGCA +
Preference number: 5 (lower is better)
Translates to: LASWLGGTHDNTTRSNPVHSIHS*AKRLKA
Trigger: TGCTTTCAGCCTCTTCGCCAAAGAGTGGATACTATG...AACTGGGTTGGACCTAGTGGTGTTGTCGTGAGTGCCACCTAACCAGGAGGCCAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000349874.9
ENST00000361511.8
CDS GCA 90 bp CCAGAGGCCTTCCCAGGAAGACAGGAGTTGGCTGAAGGGAGTTCCTaGCACAAAATCAGTATCACTTATCAACCTACCGACCTCAGCAGA +
Preference number: 5 (lower is better)
Translates to: PEAFPGRQELAEGSS*HKISITYQPTDLSR
Trigger: TCTGCTGAGGTCGGTAGGTTGATAAGTGATACTGATTTTGTGGCAGGAACTCCCTTCAGCCAACTCCTGTCTTCCTGGGAAGGCCTCTGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000486029.1
CDS-3UTR CAA 90 bp CTGGCCTCCTGGTTAGGTGGCACTCACGACAACACCACTAGGTCCAACCCAGTTCTTACCAATAACAGCTaGCTAGGGACTTCCAAAACC +
Preference number: 5 (lower is better)
Translates to: LASWLGGTHDNTTRSNPVLTNNS*LGTSKT
Trigger: GGTTTTGGAAGTCCCTAGCAAGCTGTTATTGGTAAG...AACTGGGTTGGACCTAGTGGTGTTGTCGTGAGTGCCACCTAACCAGGAGGCCAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000349874.9
ENST00000361511.8
CDS TCA 90 bp GTCTGGCCTTCAGTCGAGCTTTGTAACCTCGGTACCAGTTCTGGATaGTCAACGCAGCTCTCAGTGATGTGTCAGATCTCCTGGTTTTCG +
Preference number: 5 (lower is better)
Translates to: VWPSVELCNLGTSSG*STQLSVMCQISWFS
Trigger: CGAAAACCAGGAGATCTGACACATCACTGAGAGCTGCGTTGATCATCCAGAACTGGTACCGAGGTTACAAAGCTCGACTGAAGGCCAGAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000349874.9
ENST00000361511.8
ENST00000471570.5
ENST00000496616.5
CDS-3UTR CAA 90 bp ATGTTTTCAAACCGCTCTGGCCTCCTGGTTAGGTGGCACTCACGACAACACCACCAACGATTGTACCGATaGGGAGCCAGGCATAGAATT +
Preference number: 5 (lower is better)
Translates to: MFSNRSGLLVRWHSRQHHQRLYR*GARHRI
Trigger: AATTCTATGCCTGGCTCCCAATCGGTACAATCGTTG...GTGGTGTTGTCGTGAGTGCCACCTAACCAGGAGGCCAGAGCGGTTTGAAAACAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000349874.9
ENST00000361511.8
CDS-3UTR CAA 90 bp ATGTTTTCAAACCGCTCTGGCCTCCTGGTTAGGTGGCACTCACGACAACACCACCATAGTATCCACTCTTaGGCGAAGAGGCTGAAAGCA +
Preference number: 5 (lower is better)
Translates to: MFSNRSGLLVRWHSRQHHHSIHS*AKRLKA
Trigger: TGCTTTCAGCCTCTTCGCCAAAGAGTGGATACTATG...GTGGTGTTGTCGTGAGTGCCACCTAACCAGGAGGCCAGAGCGGTTTGAAAACAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000349874.9
ENST00000361511.8
CDS-3UTR CAA 90 bp ATTCCTCCTGTCTCCCTCAGTCACTCACAGATGTCAAGCTTAGTAGTTTTCTCTGGTGAGGGCATAGTGTaGTCTGGCCTTCAGTCGAGC +
Preference number: 5 (lower is better)
Translates to: IPPVSLSHSQMSSLVVFSGEGIV*SGLQSS
Trigger: GCTCGACTGAAGGCCAGACAACACTATGCCCTCACC...AGAGAAAACTACTAAGCTTGACATCTGTGAGTGACTGAGGGAGACAGGAGGAAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000349874.9
ENST00000361511.8
CDS-3UTR CAA 90 bp TCAGGATGTTTTCAAACCGCTCTGGCCTCCTGGTTAGGTGGCACTCACGACAACCTCTGTTTGTTTCCGTaGGTGGTATCAGCACAGATT +
Preference number: 5 (lower is better)
Translates to: SGCFQTALASWLGGTHDNLCLFP*VVSAQI
Trigger: AATCTGTGCTGATACCACCAACGGAAACAAACAGAG...GTTGTCGTGAGTGCCACCTAACCAGGAGGCCAGAGCGGTTTGAAAACATCCTGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000349874.9
ENST00000361511.8
CDS-3UTR CAA 90 bp TTCCTTTCAGGATGTTTTCAAACCGCTCTGGCCTCCTGGTTAGGTGGCACTCACCTCCTCGGCACGTATTaGGAAAACAGCCATTTTTGC +
Preference number: 5 (lower is better)
Translates to: FLSGCFQTALASWLGGTHLLGTY*ENSHFC
Trigger: GCAAAAATGGCTGTTTTCCAAATACGTGCCGAGGAG...GTGAGTGCCACCTAACCAGGAGGCCAGAGCGGTTTGAAAACATCCTGAAAGGAA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000361511.8
CDS-3UTR CAA 90 bp TTCCTTTCAGGATGTTTTCAAACCGCTCTGGCCTCCTGGTTAGGTGGCACTCACTCTGTGGTCTTGAAGTaGGAAAGCACGAGTAAGGTC +
Preference number: 5 (lower is better)
Translates to: FLSGCFQTALASWLGGTHSVVLK*ESTSKV
Trigger: GACCTTACTCGTGCTTTCCAACTTCAAGACCACAGA...GTGAGTGCCACCTAACCAGGAGGCCAGAGCGGTTTGAAAACATCCTGAAAGGAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000349874.9
ENST00000361511.8
CDS-3UTR CAA 90 bp CTGGCCTCCTGGTTAGGTGGCACTCACGACAACACCACTAGGTCCAACCCAGTTATACTATGCATCTGTTaGTGGGATGAATTGGGATCT +
Preference number: 5 (lower is better)
Translates to: LASWLGGTHDNTTRSNPVILCIC*WDELGS
Trigger: AGATCCCAATTCATCCCACAAACAGATGCATAGTAT...AACTGGGTTGGACCTAGTGGTGTTGTCGTGAGTGCCACCTAACCAGGAGGCCAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000349874.9
ENST00000361511.8
CDS TCA 90 bp AGGTTCAAGGGGAACAGACTCCTAGATCTTCACTTTGCTGGTTGTTaGCTCTTTCAGCCTGACCTGCGGGCTCAGGACACAATCTATCAT +
Preference number: 5 (lower is better)
Translates to: RFKGNRLLDLHFAGC*LFQPDLRAQDTIYH
Trigger: ATGATAGATTGTGTCCTGAGCCCGCAGGTCAGGCTGAAAGAGTCAACAACCAGCAAAGTGAAGATCTAGGAGTCTGTTCCCCTTGAACCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000349874.9
ENST00000361511.8
ENST00000486029.1
CDS GCA 90 bp AGGGCTTGTGTGTTTGCAAAATTCAAGCTTCAGCCTCTTCTCAAATaGTCTCTGGCTTTCCTACAGCTGACCAGGGATGTGTTCTCCCAG +
Preference number: 5 (lower is better)
Translates to: RACVFAKFKLQPLLK*SLAFLQLTRDVFSQ
Trigger: CTGGGAGAACACATCCCTGGTCAGCTGTAGGAAAGCCAGAGAGCATTTGAGAAGAGGCTGAAGCTTGAATTTTGCAAACACACAAGCCCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000349874.9
ENST00000361511.8
CDS-3UTR CAA 90 bp ATGTTTTCAAACCGCTCTGGCCTCCTGGTTAGGTGGCACTCACGACAACACCACTGCTTCAGGACTTTCTaGGTTTCAAATAGCACCTCT +
Preference number: 5 (lower is better)
Translates to: MFSNRSGLLVRWHSRQHHCFRTF*VSNSTS
Trigger: AGAGGTGCTATTTGAAACCAAGAAAGTCCTGAAGCA...GTGGTGTTGTCGTGAGTGCCACCTAACCAGGAGGCCAGAGCGGTTTGAAAACAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000349874.9
ENST00000361511.8
CDS-3UTR CAA 90 bp TCAGGATGTTTTCAAACCGCTCTGGCCTCCTGGTTAGGTGGCACTCACGACAACTTTGGAGGGAGAAGTTaGTATGTGAGTGAAATTCGG +
Preference number: 5 (lower is better)
Translates to: SGCFQTALASWLGGTHDNFGGRS*YVSEIR
Trigger: CCGAATTTCACTCACATACAAACTTCTCCCTCCAAA...GTTGTCGTGAGTGCCACCTAACCAGGAGGCCAGAGCGGTTTGAAAACATCCTGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000349874.9
ENST00000361511.8
CDS-3UTR CAA 90 bp TATGAGTTCCTTTCAGGATGTTTTCAAACCGCTCTGGCCTCCTGGTTAGGTGGCGCAAATCACCACAGATaGTTACCTCTTTGGAGGGAG +
Preference number: 5 (lower is better)
Translates to: YEFLSGCFQTALASWLGGANHHR*LPLWRE
Trigger: CTCCCTCCAAAGAGGTAACAATCTGTGGTGATTTGC...GCCACCTAACCAGGAGGCCAGAGCGGTTTGAAAACATCCTGAAAGGAACTCATA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000349874.9
ENST00000361511.8
CDS-3UTR CAA 90 bp GAGTTCCTTTCAGGATGTTTTCAAACCGCTCTGGCCTCCTGGTTAGGTGGCACTTGTCATGGTCTCTGTTaGTTTCCGTTGGTGGTATCA +
Preference number: 5 (lower is better)
Translates to: EFLSGCFQTALASWLGGTCHGLC*FPLVVS
Trigger: TGATACCACCAACGGAAACAAACAGAGACCATGACA...AGTGCCACCTAACCAGGAGGCCAGAGCGGTTTGAAAACATCCTGAAAGGAACTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000349874.9
ENST00000361511.8
CDS-3UTR CAA 90 bp ACCTGGTATTCCTCCTGTCTCCCTCAGTCACTCACAGATGTCAAGCTTAGTAGTGGAAAACAGCCATTTTaGCCTCTGGGATCACTCCAC +
Preference number: 5 (lower is better)
Translates to: TWYSSCLPQSLTDVKLSSGKQPF*PLGSLH
Trigger: GTGGAGTGATCCCAGAGGCAAAAATGGCTGTTTTCC...ACTACTAAGCTTGACATCTGTGAGTGACTGAGGGAGACAGGAGGAATACCAGGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000361511.8
CDS-3UTR CAA 90 bp ATGTTTTCAAACCGCTCTGGCCTCCTGGTTAGGTGGCACTCACGACAACACCACCGTTGCTTTAGTTACTaGGTACTGGAAAAATCGAGG +
Preference number: 5 (lower is better)
Translates to: MFSNRSGLLVRWHSRQHHRCFSY*VLEKSR
Trigger: CCTCGATTTTTCCAGTACCAAGTAACTAAAGCAACG...GTGGTGTTGTCGTGAGTGCCACCTAACCAGGAGGCCAGAGCGGTTTGAAAACAT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000349874.9
ENST00000361511.8
CDS-3UTR CAA 90 bp ACTTGTGATTTGGGCCTAGCTGTTTCAGGGAGCCTGAGGGAAGCTCTCATTTGTTCTGTGGTCTTGAAGTaGGAAAGCACGAGTAAGGTC +
Preference number: 5 (lower is better)
Translates to: TCDLGLAVSGSLREALICSVVLK*ESTSKV
Trigger: GACCTTACTCGTGCTTTCCAACTTCAAGACCACAGA...ACAAATGAGAGCTTCCCTCAGGCTCCCTGAAACAGCTAGGCCCAAATCACAAGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000349874.9
ENST00000361511.8
ENST00000470157.1
CDS TCA 90 bp CAGACTCCTAGATCTTCACTTTGCTGGTTGTTGACTCTTTCAGCCTaGCCTGCGGGCTCAGGACACAATCTATCATCACACAGGTCTTAT +
Preference number: 5 (lower is better)
Translates to: QTPRSSLCWLLTLSA*PAGSGHNLSSHRSY
Trigger: ATAAGACCTGTGTGATGATAGATTGTGTCCTGAGCCCGCAGGTCAGGCTGAAAGAGTCAACAACCAGCAAAGTGAAGATCTAGGAGTCTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000349874.9
ENST00000361511.8
ENST00000486029.1
CDS TCA 90 bp AAATGCAGAGGGCTGAAAGAAAAGAGGTACAATTTCAGCCCTCTCTaGAGCACCCCACACAAACACACACACACACACACACACACACAC +
Preference number: 5 (lower is better)
Translates to: KCRGLKEKRYNFSPL*STPHKHTHTHTHTH
Trigger: GTGTGTGTGTGTGTGTGTGTGTGTGTGTTTGTGTGGGGTGCTTCAGAGAGGGCTGAAATTGTACCTCTTTTCTTTCAGCCCTCTGCATTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000471570.5
ENST00000496616.5
CDS CCA 90 bp TCTGATACTGGTTTCTTCCAGAGGCCTTCCCAGGAAGACAGGAGTTaGCTGAAGGGAGTTCCTGCCACAAAATCAGTATCACTTATCAAC +
Preference number: 5 (lower is better)
Translates to: SDTGFFQRPSQEDRS*LKGVPATKSVSLIN
Trigger: GTTGATAAGTGATACTGATTTTGTGGCAGGAACTCCCTTCAGCCAACTCCTGTCTTCCTGGGAAGGCCTCTGGAAGAAACCAGTATCAGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000486029.1
CDS-3UTR CAA 90 bp CCTGGTATTCCTCCTGTCTCCCTCAGTCACTCACAGATGTCAAGCTTAGTAGTTATCTCCTGGTTTTCGTaGAAGAACTGCTGCATCCCA +
Preference number: 5 (lower is better)
Translates to: PGIPPVSLSHSQMSSLVVISWFS*KNCCIP
Trigger: TGGGATGCAGCAGTTCTTCAACGAAAACCAGGAGAT...AACTACTAAGCTTGACATCTGTGAGTGACTGAGGGAGACAGGAGGAATACCAGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000349874.9
ENST00000361511.8
CDS-3UTR CAA 90 bp CTGTATGAGTTCCTTTCAGGATGTTTTCAAACCGCTCTGGCCTCCTGGTTAGGTGGCATGAAGTATCTGTaGTTCCTTGAAGGCCTCAAG +
Preference number: 5 (lower is better)
Translates to: LYEFLSGCFQTALASWLGGMKYL*FLEGLK
Trigger: CTTGAGGCCTTCAAGGAACAACAGATACTTCATGCC...ACCTAACCAGGAGGCCAGAGCGGTTTGAAAACATCCTGAAAGGAACTCATACAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000349874.9
ENST00000361511.8
CDS-3UTR CAA 90 bp TTCCTTTCAGGATGTTTTCAAACCGCTCTGGCCTCCTGGTTAGGTGGCACTCACAGTGAAATTCGGCATTaGCTTCAGGACTTTCTTGGT +
Preference number: 5 (lower is better)
Translates to: FLSGCFQTALASWLGGTHSEIRH*LQDFLG
Trigger: ACCAAGAAAGTCCTGAAGCAAATGCCGAATTTCACT...GTGAGTGCCACCTAACCAGGAGGCCAGAGCGGTTTGAAAACATCCTGAAAGGAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000349874.9
ENST00000361511.8
CDS-3UTR CAA 90 bp ATGTTTTCAAACCGCTCTGGCCTCCTGGTTAGGTGGCACTCACGACAACACCACCTCTCTCTTAATATCTaGATGGCGCTGTTTTCCATA +
Preference number: 5 (lower is better)
Translates to: MFSNRSGLLVRWHSRQHHLSLNI*MALFSI
Trigger: TATGGAAAACAGCGCCATCAAGATATTAAGAGAGAG...GTGGTGTTGTCGTGAGTGCCACCTAACCAGGAGGCCAGAGCGGTTTGAAAACAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000349874.9
ENST00000361511.8
CDS-3UTR CAA 90 bp TCAGGATGTTTTCAAACCGCTCTGGCCTCCTGGTTAGGTGGCACTCACGACAACATGTTGGCAAGCTTATaGACTTGGGAATCATCAATG +
Preference number: 5 (lower is better)
Translates to: SGCFQTALASWLGGTHDNMLASL*TWESSM
Trigger: CATTGATGATTCCCAAGTCAATAAGCTTGCCAACAT...GTTGTCGTGAGTGCCACCTAACCAGGAGGCCAGAGCGGTTTGAAAACATCCTGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000349874.9
ENST00000361511.8
CDS-3UTR CAA 90 bp AGTTTTCTCTTGTGCTGTATGAGTTCCTTTCAGGATGTTTTCAAACCGCTCTGGCCTTTCCCTCGAGGTTaGATCAGGTCCACACAGGTT +
Preference number: 5 (lower is better)
Translates to: SFLLCCMSSFQDVFKPLWPFPRG*IRSTQV
Trigger: AACCTGTGTGGACCTGATCAAACCTCGAGGGAAAGG...CCAGAGCGGTTTGAAAACATCCTGAAAGGAACTCATACAGCACAAGAGAAAACT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000349874.9
ENST00000361511.8
CDS-3UTR CAA 90 bp ACTTGTGATTTGGGCCTAGCTGTTTCAGGGAGCCTGAGGGAAGCTCTCATTTGTTGCTTCAGGACTTTCTaGGTTTCAAATAGCACCTCT +
Preference number: 5 (lower is better)
Translates to: TCDLGLAVSGSLREALICCFRTF*VSNSTS
Trigger: AGAGGTGCTATTTGAAACCAAGAAAGTCCTGAAGCA...ACAAATGAGAGCTTCCCTCAGGCTCCCTGAAACAGCTAGGCCCAAATCACAAGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000349874.9
ENST00000361511.8
CDS-3UTR CAA 90 bp ACTTGTGATTTGGGCCTAGCTGTTTCAGGGAGCCTGAGGGAAGCTCTCATTTGTGGCAAGCTTATTGACTaGGGAATCATCAATGTGAAC +
Preference number: 5 (lower is better)
Translates to: TCDLGLAVSGSLREALICGKLID*GIINVN
Trigger: GTTCACATTGATGATTCCCAAGTCAATAAGCTTGCC...ACAAATGAGAGCTTCCCTCAGGCTCCCTGAAACAGCTAGGCCCAAATCACAAGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000349874.9
ENST00000361511.8
ENST00000470157.1
CDS-3UTR CAA 90 bp TGTACTTGTGATTTGGGCCTAGCTGTTTCAGGGAGCCTGAGGGAAGCTCTCATTGGCAAGCTTATTGACTaGGGAATCATCAATGTGAAC +
Preference number: 5 (lower is better)
Translates to: CTCDLGLAVSGSLREALIGKLID*GIINVN
Trigger: GTTCACATTGATGATTCCCAAGTCAATAAGCTTGCC...AATGAGAGCTTCCCTCAGGCTCCCTGAAACAGCTAGGCCCAAATCACAAGTACA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000349874.9
ENST00000361511.8
ENST00000470157.1
CDS-3UTR CAA 90 bp ATGTTTTCAAACCGCTCTGGCCTCCTGGTTAGGTGGCACTCACGACAACACCACTCAATGCTTCCATCTTaGTTCAAGTCCATTATGTTG +
Preference number: 5 (lower is better)
Translates to: MFSNRSGLLVRWHSRQHHSMLPS*FKSIML
Trigger: CAACATAATGGACTTGAACAAAGATGGAAGCATTGA...GTGGTGTTGTCGTGAGTGCCACCTAACCAGGAGGCCAGAGCGGTTTGAAAACAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000349874.9
ENST00000361511.8
CDS-3UTR CAA 90 bp ATGTTTTCAAACCGCTCTGGCCTCCTGGTTAGGTGGCACTCACGACAACACCACCTTAGTAGTTTTCTCTaGTGCTGTATGAGTTCCTTT +
Preference number: 5 (lower is better)
Translates to: MFSNRSGLLVRWHSRQHHLSSFL*CCMSSF
Trigger: AAAGGAACTCATACAGCACAAGAGAAAACTACTAAG...GTGGTGTTGTCGTGAGTGCCACCTAACCAGGAGGCCAGAGCGGTTTGAAAACAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000349874.9
ENST00000361511.8
CDS-3UTR CAA 90 bp ACTAGGTCCAACCCAGTTTCTCACTGGCAATATGTAGGTACTAATGCTGAAACCGGCATGAAGTATCTGTaGTTCCTTGAAGGCCTCAAG +
Preference number: 5 (lower is better)
Translates to: TRSNPVSHWQYVGTNAETGMKYL*FLEGLK
Trigger: CTTGAGGCCTTCAAGGAACAACAGATACTTCATGCC...GGTTTCAGCATTAGTACCTACATATTGCCAGTGAGAAACTGGGTTGGACCTAGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000349874.9
ENST00000361511.8
CDS-3UTR CAA 90 bp ACCTGGTATTCCTCCTGTCTCCCTCAGTCACTCACAGATGTCAAGCTTAGTAGTTTTGGAGGGAGAAGTTaGTATGTGAGTGAAATTCGG +
Preference number: 5 (lower is better)
Translates to: TWYSSCLPQSLTDVKLSSFGGRS*YVSEIR
Trigger: CCGAATTTCACTCACATACAAACTTCTCCCTCCAAA...ACTACTAAGCTTGACATCTGTGAGTGACTGAGGGAGACAGGAGGAATACCAGGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000349874.9
ENST00000361511.8
CDS-3UTR CAA 90 bp AGACTTTATTCCATGAATAACCTGGTATTCCTCCTGTCTCCCTCAGTCACTCACGCAAATCACCACAGATaGTTACCTCTTTGGAGGGAG +
Preference number: 5 (lower is better)
Translates to: RLYSMNNLVFLLSPSVTHANHHR*LPLWRE
Trigger: CTCCCTCCAAAGAGGTAACAATCTGTGGTGATTTGC...GTGAGTGACTGAGGGAGACAGGAGGAATACCAGGTTATTCATGGAATAAAGTCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000349874.9
ENST00000361511.8
CDS-3UTR CAA 90 bp ACTAGGTCCAACCCAGTTTCTCACTGGCAATATGTAGGTACTAATGCTGAAACCAGCACAGATTTCATCTaGTTCCTCTCTACACGGTGG +
Preference number: 5 (lower is better)
Translates to: TRSNPVSHWQYVGTNAETSTDFI*FLSTRW
Trigger: CCACCGTGTAGAGAGGAACAAGATGAAATCTGTGCT...GGTTTCAGCATTAGTACCTACATATTGCCAGTGAGAAACTGGGTTGGACCTAGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000349874.9
ENST00000361511.8
CDS-3UTR CAA 90 bp CCCATACTATGCATCTGTTTGTGGGATGAATTGGGATCTGCTTTTCTCTGCTACAGCACAGATTTCATCTaGTTCCTCTCTACACGGTGG +
Preference number: 5 (lower is better)
Translates to: PILCICLWDELGSAFLCYSTDFI*FLSTRW
Trigger: CCACCGTGTAGAGAGGAACAAGATGAAATCTGTGCT...GTAGCAGAGAAAAGCAGATCCCAATTCATCCCACAAACAGATGCATAGTATGGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000349874.9
ENST00000361511.8
CDS-3UTR CAA 90 bp TGTACTTGTGATTTGGGCCTAGCTGTTTCAGGGAGCCTGAGGGAAGCTCTCATTCTCTCTCTTAATATCTaGATGGCGCTGTTTTCCATA +
Preference number: 5 (lower is better)
Translates to: CTCDLGLAVSGSLREALILSLNI*MALFSI
Trigger: TATGGAAAACAGCGCCATCAAGATATTAAGAGAGAG...AATGAGAGCTTCCCTCAGGCTCCCTGAAACAGCTAGGCCCAAATCACAAGTACA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000349874.9
ENST00000361511.8
CDS-3UTR CAA 90 bp AGACTTTATTCCATGAATAACCTGGTATTCCTCCTGTCTCCCTCAGTCACTCACTCTGTGGTCTTGAAGTaGGAAAGCACGAGTAAGGTC +
Preference number: 5 (lower is better)
Translates to: RLYSMNNLVFLLSPSVTHSVVLK*ESTSKV
Trigger: GACCTTACTCGTGCTTTCCAACTTCAAGACCACAGA...GTGAGTGACTGAGGGAGACAGGAGGAATACCAGGTTATTCATGGAATAAAGTCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000349874.9
ENST00000361511.8
CDS-3UTR CAA 90 bp ACTTGTGATTTGGGCCTAGCTGTTTCAGGGAGCCTGAGGGAAGCTCTCATTTGTATGTTGGCAAGCTTATaGACTTGGGAATCATCAATG +
Preference number: 5 (lower is better)
Translates to: TCDLGLAVSGSLREALICMLASL*TWESSM
Trigger: CATTGATGATTCCCAAGTCAATAAGCTTGCCAACAT...ACAAATGAGAGCTTCCCTCAGGCTCCCTGAAACAGCTAGGCCCAAATCACAAGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000349874.9
ENST00000361511.8
ENST00000470157.1
CDS-3UTR CAA 90 bp TGTACTTGTGATTTGGGCCTAGCTGTTTCAGGGAGCCTGAGGGAAGCTCTCATTTTCAAGTCCATTATGTaGGCAAGCTTATTGACTTGG +
Preference number: 5 (lower is better)
Translates to: CTCDLGLAVSGSLREALIFKSIM*ASLLTW
Trigger: CCAAGTCAATAAGCTTGCCAACATAATGGACTTGAA...AATGAGAGCTTCCCTCAGGCTCCCTGAAACAGCTAGGCCCAAATCACAAGTACA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000349874.9
ENST00000361511.8
ENST00000470157.1
CDS-3UTR CAA 90 bp TCCAACCCAGTTTCTCACTGGCAATATGTAGGTACTAATGCTGAAACCAAATCCGACTGTACTTGTGATTaGGGCCTAGCTGTTTCAGGG +
Preference number: 5 (lower is better)
Translates to: SNPVSHWQYVGTNAETKSDCTCD*GLAVSG
Trigger: CCCTGAAACAGCTAGGCCCAAATCACAAGTACAGTC...GGATTTGGTTTCAGCATTAGTACCTACATATTGCCAGTGAGAAACTGGGTTGGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000349874.9
ENST00000361511.8
CDS-3UTR CAA 90 bp TACTATGCATCTGTTTGTGGGATGAATTGGGATCTGCTTTTCTCTGCTACTGACGACTGTACTTGTGATTaGGGCCTAGCTGTTTCAGGG +
Preference number: 5 (lower is better)
Translates to: YYASVCGMNWDLLFSATDDCTCD*GLAVSG
Trigger: CCCTGAAACAGCTAGGCCCAAATCACAAGTACAGTC...GTCAGTAGCAGAGAAAAGCAGATCCCAATTCATCCCACAAACAGATGCATAGTA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000349874.9
ENST00000361511.8
CDS CCA 90 bp TTTATTGTGCTTCGAGTCAGTGTCATGGTCTCTGTTTGTTTCCGTTaGTGGTATCAGCACAGATTTCATCTTGTTCCTCTCTACACGGTG +
Preference number: 5 (lower is better)
Translates to: FIVLRVSVMVSVCFR*WYQHRFHLVPLYTV
Trigger: CACCGTGTAGAGAGGAACAAGATGAAATCTGTGCTGATACCACCAACGGAAACAAACAGAGACCATGACACTGACTCGAAGCACAATAAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000349874.9
ENST00000361511.8
ENST00000379962.3
ENST00000496075.2
CDS-3UTR CAA 90 bp ATTCCTCCTGTCTCCCTCAGTCACTCACAGATGTCAAGCTTAGTAGTTTTCTCTAGAGGGCTTGTGTGTTaGCAAAATTCAAGCTTCAGC +
Preference number: 5 (lower is better)
Translates to: IPPVSLSHSQMSSLVVFSRGLVC*QNSSFS
Trigger: GCTGAAGCTTGAATTTTGCAAACACACAAGCCCTCT...AGAGAAAACTACTAAGCTTGACATCTGTGAGTGACTGAGGGAGACAGGAGGAAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000349874.9
ENST00000361511.8
CDS-3UTR CAA 90 bp GTCTCCCTCAGTCACTCACAGATGTCAAGCTTAGTAGTTTTCTCTTGTGCTGTAAGAGGGCTTGTGTGTTaGCAAAATTCAAGCTTCAGC +
Preference number: 5 (lower is better)
Translates to: VSLSHSQMSSLVVFSCAVRGLVC*QNSSFS
Trigger: GCTGAAGCTTGAATTTTGCAAACACACAAGCCCTCT...TACAGCACAAGAGAAAACTACTAAGCTTGACATCTGTGAGTGACTGAGGGAGAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000349874.9
ENST00000361511.8
CDS-3UTR CAA 90 bp TCCAACCCAGTTTCTCACTGGCAATATGTAGGTACTAATGCTGAAACCAAATCCCAACGATTGTACCGATaGGGAGCCAGGCATAGAATT +
Preference number: 5 (lower is better)
Translates to: SNPVSHWQYVGTNAETKSQRLYR*GARHRI
Trigger: AATTCTATGCCTGGCTCCCAATCGGTACAATCGTTG...GGATTTGGTTTCAGCATTAGTACCTACATATTGCCAGTGAGAAACTGGGTTGGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000349874.9
ENST00000361511.8
CDS-3UTR CAA 90 bp CCCATACTATGCATCTGTTTGTGGGATGAATTGGGATCTGCTTTTCTCTGCTACCTCTGTTTGTTTCCGTaGGTGGTATCAGCACAGATT +
Preference number: 5 (lower is better)
Translates to: PILCICLWDELGSAFLCYLCLFP*VVSAQI
Trigger: AATCTGTGCTGATACCACCAACGGAAACAAACAGAG...GTAGCAGAGAAAAGCAGATCCCAATTCATCCCACAAACAGATGCATAGTATGGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000349874.9
ENST00000361511.8
CDS-3UTR CAA 90 bp AGACTTTATTCCATGAATAACCTGGTATTCCTCCTGTCTCCCTCAGTCACTCACGTCACACCTACTTTATaGTGCTTCGAGTCAGTGTCA +
Preference number: 5 (lower is better)
Translates to: RLYSMNNLVFLLSPSVTHVTPTL*CFESVS
Trigger: TGACACTGACTCGAAGCACAATAAAGTAGGTGTGAC...GTGAGTGACTGAGGGAGACAGGAGGAATACCAGGTTATTCATGGAATAAAGTCT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000349874.9
ENST00000361511.8
CDS-3UTR CAA 90 bp ACTAGGTCCAACCCAGTTTCTCACTGGCAATATGTAGGTACTAATGCTGAAACCGTCACACCTACTTTATaGTGCTTCGAGTCAGTGTCA +
Preference number: 5 (lower is better)
Translates to: TRSNPVSHWQYVGTNAETVTPTL*CFESVS
Trigger: TGACACTGACTCGAAGCACAATAAAGTAGGTGTGAC...GGTTTCAGCATTAGTACCTACATATTGCCAGTGAGAAACTGGGTTGGACCTAGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000349874.9
ENST00000361511.8
CDS-3UTR CAA 90 bp ACTTGTGATTTGGGCCTAGCTGTTTCAGGGAGCCTGAGGGAAGCTCTCATTTGTTCAATGCTTCCATCTTaGTTCAAGTCCATTATGTTG +
Preference number: 5 (lower is better)
Translates to: TCDLGLAVSGSLREALICSMLPS*FKSIML
Trigger: CAACATAATGGACTTGAACAAAGATGGAAGCATTGA...ACAAATGAGAGCTTCCCTCAGGCTCCCTGAAACAGCTAGGCCCAAATCACAAGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000349874.9
ENST00000361511.8
ENST00000470157.1
CDS GCA 90 bp GTGTTCATGAATTCAACTTCTGATTTTAAGACAGAGTGTGAAAAGTaGCTCCCTTTAAGCTGCGAGGAACCACTCTTAGCCGATCCTCTT +
Preference number: 5 (lower is better)
Translates to: VFMNSTSDFKTECEK*LPLSCEEPLLADPL
Trigger: AAGAGGATCGGCTAAGAGTGGTTCCTCGCAGCTTAAAGGGAGGCACTTTTCACACTCTGTCTTAAAATCAGAAGTTGAATTCATGAACAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENST00000349874.9
ENST00000361511.8
ENST00000471570.5
ENST00000472826.5
ENST00000496075.2
ENST00000496616.5
CDS GCA 90 bp GTTTTCCATAGTATCCACTCTTTGGCGAAGAGGCTGAAAGCACGTTaGTTTAGTTACTTGGTACTGGAAAAATCGAGGAGTTGTACCAGA +
Preference number: 5 (lower is better)
Translates to: VFHSIHSLAKRLKAR*FSYLVLEKSRSCTR
Trigger: TCTGGTACAACTCCTCGATTTTTCCAGTACCAAGTAACTAAAGCAACGTGCTTTCAGCCTCTTCGCCAAAGAGTGGATACTATGGAAAAC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000349874.9
ENST00000361511.8
ENST00000379962.3
CDS-3UTR CAA 90 bp ACTAGGTCCAACCCAGTTTCTCACTGGCAATATGTAGGTACTAATGCTGAAACCAGTGAAATTCGGCATTaGCTTCAGGACTTTCTTGGT +
Preference number: 5 (lower is better)
Translates to: TRSNPVSHWQYVGTNAETSEIRH*LQDFLG
Trigger: ACCAAGAAAGTCCTGAAGCAAATGCCGAATTTCACT...GGTTTCAGCATTAGTACCTACATATTGCCAGTGAGAAACTGGGTTGGACCTAGT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000349874.9
ENST00000361511.8
CDS-3UTR CAA 90 bp AAGATGGAAAGACTTTATTCCATGAATAACCTGGTATTCCTCCTGTCTCCCTCATTTCATTGTCAACGATaGTACCGATTGGGAGCCAGG +
Preference number: 5 (lower is better)
Translates to: KMERLYSMNNLVFLLSPSFHCQR*YRLGAR
Trigger: CCTGGCTCCCAATCGGTACAATCGTTGACAATGAAA...TGAGGGAGACAGGAGGAATACCAGGTTATTCATGGAATAAAGTCTTTCCATCTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000349874.9
ENST00000361511.8
CDS-3UTR CAA 90 bp TCCAACCCAGTTTCTCACTGGCAATATGTAGGTACTAATGCTGAAACCAAATCCTGTTTGTGGGATGAATaGGGATCTGCTTTTCTCTGC +
Preference number: 5 (lower is better)
Translates to: SNPVSHWQYVGTNAETKSCLWDE*GSAFLC
Trigger: GCAGAGAAAAGCAGATCCCAATTCATCCCACAAACA...GGATTTGGTTTCAGCATTAGTACCTACATATTGCCAGTGAGAAACTGGGTTGGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000349874.9
ENST00000361511.8
CDS-3UTR CAA 90 bp TACTATGCATCTGTTTGTGGGATGAATTGGGATCTGCTTTTCTCTGCTACTGACCTTACCAATAACAGCTaGCTAGGGACTTCCAAAACC +
Preference number: 5 (lower is better)
Translates to: YYASVCGMNWDLLFSATDLTNNS*LGTSKT
Trigger: GGTTTTGGAAGTCCCTAGCAAGCTGTTATTGGTAAG...GTCAGTAGCAGAGAAAAGCAGATCCCAATTCATCCCACAAACAGATGCATAGTA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000349874.9
ENST00000361511.8
CDS CCA 90 bp GCATTAAAAGTCACACCTACTTTATTGTGCTTCGAGTCAGTGTCATaGTCTCTGTTTGTTTCCGTTGGTGGTATCAGCACAGATTTCATC +
Preference number: 5 (lower is better)
Translates to: ALKVTPTLLCFESVS*SLFVSVGGISTDFI
Trigger: GATGAAATCTGTGCTGATACCACCAACGGAAACAAACAGAGACCATGACACTGACTCGAAGCACAATAAAGTAGGTGTGACTTTTAATGC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000349874.9
ENST00000361511.8
ENST00000379962.3
CDS CCA 90 bp ATGCGGATATTCTGGAAGCTGGACATGTATTCAACGTTTCCATTTTaGTCTATGTTTACCAGATTCGAACTGAGGGATCTCCATGGTAAG +
Preference number: 5 (lower is better)
Translates to: MRIFWKLDMYSTFPF*SMFTRFELRDLHGK
Trigger: CTTACCATGGAGATCCCTCAGTTCGAATCTGGTAAACATAGACCAAAATGGAAACGTTGAATACATGTCCAGCTTCCAGAATATCCGCAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000349874.9
ENST00000361511.8
ENST00000379962.3
CDS-3UTR CAA 90 bp TACTATGCATCTGTTTGTGGGATGAATTGGGATCTGCTTTTCTCTGCTACTGACGGAAATGCAGAGGGCTaGTGTGTTTGCAAAATTCAA +
Preference number: 5 (lower is better)
Translates to: YYASVCGMNWDLLFSATDGNAEG*CVCKIQ
Trigger: TTGAATTTTGCAAACACACAAGCCCTCTGCATTTCC...GTCAGTAGCAGAGAAAAGCAGATCCCAATTCATCCCACAAACAGATGCATAGTA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000349874.9
ENST00000361511.8
CDS-3UTR CAA 90 bp GTCTCCCTCAGTCACTCACAGATGTCAAGCTTAGTAGTTTTCTCTTGTGCTGTATTCTGTTTCTTCTGCTaGGCCAATGTAGAGGTTTTT +
Preference number: 5 (lower is better)
Translates to: VSLSHSQMSSLVVFSCAVFCFFC*ANVEVF
Trigger: AAAAACCTCTACATTGGCCAAGCAGAAGAAACAGAA...TACAGCACAAGAGAAAACTACTAAGCTTGACATCTGTGAGTGACTGAGGGAGAC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000349874.9
ENST00000361511.8
CDS-3UTR CAA 90 bp AGACTTTATTCCATGAATAACCTGGTATTCCTCCTGTCTCCCTCAGTCACTCACTTCTGTTTCTTCTGCTaGGCCAATGTAGAGGTTTTT +
Preference number: 5 (lower is better)
Translates to: RLYSMNNLVFLLSPSVTHFCFFC*ANVEVF
Trigger: AAAAACCTCTACATTGGCCAAGCAGAAGAAACAGAA...GTGAGTGACTGAGGGAGACAGGAGGAATACCAGGTTATTCATGGAATAAAGTCT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000349874.9
ENST00000361511.8
CDS-3UTR CAA 90 bp TCCAACCCAGTTTCTCACTGGCAATATGTAGGTACTAATGCTGAAACCAAATCCCAGATTGTTACCTCTTaGGAGGGAGAAGTTTGTATG +
Preference number: 5 (lower is better)
Translates to: SNPVSHWQYVGTNAETKSQIVTS*EGEVCM
Trigger: CATACAAACTTCTCCCTCCAAAGAGGTAACAATCTG...GGATTTGGTTTCAGCATTAGTACCTACATATTGCCAGTGAGAAACTGGGTTGGA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000349874.9
ENST00000361511.8
CDS-3UTR CAA 90 bp GATGTCAAGCTTAGTAGTTTTCTCTTGTGCTGTATGAGTTCCTTTCAGGATGTTTTTCATTGTCAACGATaGTACCGATTGGGAGCCAGG +
Preference number: 5 (lower is better)
Translates to: DVKLSSFLLCCMSSFQDVFHCQR*YRLGAR
Trigger: CCTGGCTCCCAATCGGTACAATCGTTGACAATGAAA...AACATCCTGAAAGGAACTCATACAGCACAAGAGAAAACTACTAAGCTTGACATC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000349874.9
ENST00000361511.8
CDS-3UTR CAA 90 bp AGACTTTATTCCATGAATAACCTGGTATTCCTCCTGTCTCCCTCAGTCACTCACATGACCAGGATTTCATaGTCAACGATTGTACCGATT +
Preference number: 5 (lower is better)
Translates to: RLYSMNNLVFLLSPSVTHMTRIS*STIVPI
Trigger: AATCGGTACAATCGTTGACAATGAAATCCTGGTCAT...GTGAGTGACTGAGGGAGACAGGAGGAATACCAGGTTATTCATGGAATAAAGTCT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000349874.9
ENST00000361511.8
CDS-3UTR CAA 90 bp AGTTTTCTCTTGTGCTGTATGAGTTCCTTTCAGGATGTTTTCAAACCGCTCTGGCGTTGCTTTAGTTACTaGGTACTGGAAAAATCGAGG +
Preference number: 5 (lower is better)
Translates to: SFLLCCMSSFQDVFKPLWRCFSY*VLEKSR
Trigger: CCTCGATTTTTCCAGTACCAAGTAACTAAAGCAACG...CCAGAGCGGTTTGAAAACATCCTGAAAGGAACTCATACAGCACAAGAGAAAACT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000349874.9
ENST00000361511.8
CDS-3UTR CAA 90 bp TACTATGCATCTGTTTGTGGGATGAATTGGGATCTGCTTTTCTCTGCTACTGACGGCAAGCTTATTGACTaGGGAATCATCAATGTGAAC +
Preference number: 5 (lower is better)
Translates to: YYASVCGMNWDLLFSATDGKLID*GIINVN
Trigger: GTTCACATTGATGATTCCCAAGTCAATAAGCTTGCC...GTCAGTAGCAGAGAAAAGCAGATCCCAATTCATCCCACAAACAGATGCATAGTA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000349874.9
ENST00000361511.8
CDS-3UTR CAA 90 bp GTCTCCCTCAGTCACTCACAGATGTCAAGCTTAGTAGTTTTCTCTTGTGCTGTATTCAAGTCCATTATGTaGGCAAGCTTATTGACTTGG +
Preference number: 5 (lower is better)
Translates to: VSLSHSQMSSLVVFSCAVFKSIM*ASLLTW
Trigger: CCAAGTCAATAAGCTTGCCAACATAATGGACTTGAA...TACAGCACAAGAGAAAACTACTAAGCTTGACATCTGTGAGTGACTGAGGGAGAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000349874.9
ENST00000361511.8
CDS-3UTR CAA 90 bp AGACTTTATTCCATGAATAACCTGGTATTCCTCCTGTCTCCCTCAGTCACTCACTTCAAGTCCATTATGTaGGCAAGCTTATTGACTTGG +
Preference number: 5 (lower is better)
Translates to: RLYSMNNLVFLLSPSVTHFKSIM*ASLLTW
Trigger: CCAAGTCAATAAGCTTGCCAACATAATGGACTTGAA...GTGAGTGACTGAGGGAGACAGGAGGAATACCAGGTTATTCATGGAATAAAGTCT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000349874.9
ENST00000361511.8
CDS-3UTR CAA 90 bp GTCTCCCTCAGTCACTCACAGATGTCAAGCTTAGTAGTTTTCTCTTGTGCTGTAATACTATGCATCTGTTaGTGGGATGAATTGGGATCT +
Preference number: 5 (lower is better)
Translates to: VSLSHSQMSSLVVFSCAVILCIC*WDELGS
Trigger: AGATCCCAATTCATCCCACAAACAGATGCATAGTAT...TACAGCACAAGAGAAAACTACTAAGCTTGACATCTGTGAGTGACTGAGGGAGAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000349874.9
ENST00000361511.8
CDS GCA 90 bp GTTTTGATTCTTCCATGTGCATTAAAAGTCACACCTACTTTATTGTaGTTCGAGTCAGTGTCATGGTCTCTGTTTGTTTCCGTTGGTGGT +
Preference number: 5 (lower is better)
Translates to: VLILPCALKVTPTLL*FESVSWSLFVSVGG
Trigger: ACCACCAACGGAAACAAACAGAGACCATGACACTGACTCGAAGCACAATAAAGTAGGTGTGACTTTTAATGCACATGGAAGAATCAAAAC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000349874.9
ENST00000361511.8
ENST00000379962.3
CDS-3UTR CAA 90 bp GATGTCAAGCTTAGTAGTTTTCTCTTGTGCTGTATGAGTTCCTTTCAGGATGTTTGTCATGGTCTCTGTTaGTTTCCGTTGGTGGTATCA +
Preference number: 5 (lower is better)
Translates to: DVKLSSFLLCCMSSFQDVCHGLC*FPLVVS
Trigger: TGATACCACCAACGGAAACAAACAGAGACCATGACA...AACATCCTGAAAGGAACTCATACAGCACAAGAGAAAACTACTAAGCTTGACATC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000349874.9
ENST00000361511.8
CDS-3UTR CAA 90 bp CCCATACTATGCATCTGTTTGTGGGATGAATTGGGATCTGCTTTTCTCTGCTACGGAGATCCATTTGTTTaGATTCTTCCATGTGCATTA +
Preference number: 5 (lower is better)
Translates to: PILCICLWDELGSAFLCYGDPFV*ILPCAL
Trigger: TAATGCACATGGAAGAATCAAAACAAATGGATCTCC...GTAGCAGAGAAAAGCAGATCCCAATTCATCCCACAAACAGATGCATAGTATGGG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000349874.9
ENST00000361511.8
CDS-3UTR CAA 90 bp GTCTCCCTCAGTCACTCACAGATGTCAAGCTTAGTAGTTTTCTCTTGTGCTGTAGGAGATCCATTTGTTTaGATTCTTCCATGTGCATTA +
Preference number: 5 (lower is better)
Translates to: VSLSHSQMSSLVVFSCAVGDPFV*ILPCAL
Trigger: TAATGCACATGGAAGAATCAAAACAAATGGATCTCC...TACAGCACAAGAGAAAACTACTAAGCTTGACATCTGTGAGTGACTGAGGGAGAC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000349874.9
ENST00000361511.8
CDS-3UTR CAA 90 bp GATGTCAAGCTTAGTAGTTTTCTCTTGTGCTGTATGAGTTCCTTTCAGGATGTTTGTTTGTGGGATGAATaGGGATCTGCTTTTCTCTGC +
Preference number: 5 (lower is better)
Translates to: DVKLSSFLLCCMSSFQDVCLWDE*GSAFLC
Trigger: GCAGAGAAAAGCAGATCCCAATTCATCCCACAAACA...AACATCCTGAAAGGAACTCATACAGCACAAGAGAAAACTACTAAGCTTGACATC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000349874.9
ENST00000361511.8
CDS-3UTR CAA 90 bp AAGATGGAAAGACTTTATTCCATGAATAACCTGGTATTCCTCCTGTCTCCCTCAATGTTGGCAAGCTTATaGACTTGGGAATCATCAATG +
Preference number: 5 (lower is better)
Translates to: KMERLYSMNNLVFLLSPSMLASL*TWESSM
Trigger: CATTGATGATTCCCAAGTCAATAAGCTTGCCAACAT...TGAGGGAGACAGGAGGAATACCAGGTTATTCATGGAATAAAGTCTTTCCATCTT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000349874.9
ENST00000361511.8
CDS-3UTR CAA 90 bp TCCAACCCAGTTTCTCACTGGCAATATGTAGGTACTAATGCTGAAACCAAATCCTCAATGCTTCCATCTTaGTTCAAGTCCATTATGTTG +
Preference number: 5 (lower is better)
Translates to: SNPVSHWQYVGTNAETKSSMLPS*FKSIML
Trigger: CAACATAATGGACTTGAACAAAGATGGAAGCATTGA...GGATTTGGTTTCAGCATTAGTACCTACATATTGCCAGTGAGAAACTGGGTTGGA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000349874.9
ENST00000361511.8
CDS TCA 90 bp AAATCACCACAGATTGTTACCTCTTTGGAGGGAGAAGTTTGTATGTaGGTGAAATTCGGCATTTGCTTCAGGACTTTCTTGGTTTCAAAT +
Preference number: 5 (lower is better)
Translates to: KSPQIVTSLEGEVCM*VKFGICFRTFLVSN
Trigger: ATTTGAAACCAAGAAAGTCCTGAAGCAAATGCCGAATTTCACTCACATACAAACTTCTCCCTCCAAAGAGGTAACAATCTGTGGTGATTT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENST00000349874.9
ENST00000361511.8
ENST00000379962.3
ENST00000472826.5
ENST00000496075.2
CDS CCA 90 bp AATGAGCCTCTTGTACAGGTTTTTCAATGCGGATATTCTGGAAGCTaGACATGTATTCAACGTTTCCATTTTGGTCTATGTTTACCAGAT +
Preference number: 5 (lower is better)
Translates to: NEPLVQVFQCGYSGS*TCIQRFHFGLCLPD
Trigger: ATCTGGTAAACATAGACCAAAATGGAAACGTTGAATACATGTCCAGCTTCCAGAATATCCGCATTGAAAAACCTGTACAAGAGGCTCATT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000349874.9
ENST00000361511.8
ENST00000379962.3
CDS TCA 90 bp TTAATTCTAGCTCTTCCTTATGTATATGTGTGTAGTTTTCCAACATaGAGGAAAAGAAGGTGGATAACTGCATTTGGCCTTGTTCATCAG +
Preference number: 5 (lower is better)
Translates to: LILALPYVYVCSFPT*RKRRWITAFGLVHQ
Trigger: CTGATGAACAAGGCCAAATGCAGTTATCCACCTTCTTTTCCTTCATGTTGGAAAACTACACACATATACATAAGGAAGAGCTAGAATTAA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENST00000349874.9
ENST00000361511.8
ENST00000379962.3
ENST00000471570.5
ENST00000496616.5
CDS TCA 72 bp GGGAACAGACTCCTAGATCTTCACTTTGCTGGTTGTTaGCTCTTTCAGCCTGACCTGCGGGCTCAGGACACA +
Preference number: 6 (lower is better)
Translates to: GNRLLDLHFAGC*LFQPDLRAQDT
Trigger: TGTGTCCTGAGCCCGCAGGTCAGGCTGAAAGAGTCAACAACCAGCAAAGTGAAGATCTAGGAGTCTGTTCCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000349874.9
ENST00000361511.8
ENST00000486029.1
CDS TCA 72 bp TCAGTCGAGCTTTGTAACCTCGGTACCAGTTCTGGATaGTCAACGCAGCTCTCAGTGCTGCAGACCCACAGA +
Preference number: 6 (lower is better)
Translates to: SVELCNLGTSSG*STQLSVLQTHR
Trigger: TCTGTGGGTCTGCAGCACTGAGAGCTGCGTTGATCATCCAGAACTGGTACCGAGGTTACAAAGCTCGACTGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000379962.3
CDS TCA 72 bp TCAGTCGAGCTTTGTAACCTCGGTACCAGTTCTGGATaGTCAACGCAGCTCTCAGTGATGTGTCAGATCTCC +
Preference number: 6 (lower is better)
Translates to: SVELCNLGTSSG*STQLSVMCQIS
Trigger: GGAGATCTGACACATCACTGAGAGCTGCGTTGATCATCCAGAACTGGTACCGAGGTTACAAAGCTCGACTGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000349874.9
ENST00000361511.8
ENST00000471570.5
ENST00000496616.5
CDS CAA 90 bp TTCATCAGCATATTCGATGGACTGGAAGATGGTGAGGGCATAGTGTaGTCTGGCCTTCAGTCGAGCTTTGTAACCTCGGTACCAGTTCTG +
Preference number: 6 (lower is better)
Translates to: FISIFDGLEDGEGIV*SGLQSSFVTSVPVL
Trigger: CAGAACTGGTACCGAGGTTACAAAGCTCGACTGAAGGCCAGACAACACTATGCCCTCACCATCTTCCAGTCCATCGAATATGCTGATGAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENST00000349874.9
ENST00000361511.8
ENST00000379962.3
ENST00000471570.5
ENST00000496616.5
CDS TCA 72 bp AGATCTTCACTTTGCTGGTTGTTGACTCTTTCAGCCTaGCCTGCGGGCTCAGGACACAATCTATCATCACAC +
Preference number: 6 (lower is better)
Translates to: RSSLCWLLTLSA*PAGSGHNLSSH
Trigger: GTGTGATGATAGATTGTGTCCTGAGCCCGCAGGTCAGGCTGAAAGAGTCAACAACCAGCAAAGTGAAGATCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000349874.9
ENST00000361511.8
ENST00000486029.1
CDS TCA 72 bp CTTGTTCATCAGCATATTCGATGGACTGGAAGATGGTaGGGGCATAGTGTTGTCTGGCCTTCAGTCGAGCTT +
Preference number: 6 (lower is better)
Translates to: LVHQHIRWTGRW*GHSVVWPSVEL
Trigger: AAGCTCGACTGAAGGCCAGACAACACTATGCCCTCACCATCTTCCAGTCCATCGAATATGCTGATGAACAAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENST00000349874.9
ENST00000361511.8
ENST00000379962.3
ENST00000471570.5
ENST00000496616.5
CDS TCA 72 bp GGGCTGAAAGAAAAGAGGTACAATTTCAGCCCTCTCTaGAGCACCCCACACAAACACACACACACACACACA +
Preference number: 6 (lower is better)
Translates to: GLKEKRYNFSPL*STPHKHTHTHT
Trigger: TGTGTGTGTGTGTGTGTGTTTGTGTGGGGTGCTTCAGAGAGGGCTGAAATTGTACCTCTTTTCTTTCAGCCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000471570.5
ENST00000496616.5
CDS GCA 72 bp TTCCCAGGAAGACAGGAGTTGGCTGAAGGGAGTTCCTaGCACAAAATCAGTATCACTTATCAACCTACCGAC +
Preference number: 6 (lower is better)
Translates to: FPGRQELAEGSS*HKISITYQPTD
Trigger: GTCGGTAGGTTGATAAGTGATACTGATTTTGTGGCAGGAACTCCCTTCAGCCAACTCCTGTCTTCCTGGGAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000486029.1
CDS CAA 72 bp ATATTCGATGGACTGGAAGATGGTGAGGGCATAGTGTaGTCTGGCCTTCAGTCGAGCTTTGTAACCTCGGTA +
Preference number: 6 (lower is better)
Translates to: IFDGLEDGEGIV*SGLQSSFVTSV
Trigger: TACCGAGGTTACAAAGCTCGACTGAAGGCCAGACAACACTATGCCCTCACCATCTTCCAGTCCATCGAATAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENST00000349874.9
ENST00000361511.8
ENST00000379962.3
ENST00000471570.5
ENST00000496616.5
CDS CAA 72 bp CCTAGCTGTTTCAGGGAGCCTGAGGGAAGCTCTCATTaGTGTTTAGCCAAGGTTGGTGACATCAGGTTTCAT +
Preference number: 6 (lower is better)
Translates to: PSCFREPEGSSH*CLAKVGDIRFH
Trigger: ATGAAACCTGATGTCACCAACCTTGGCTAAACACAAATGAGAGCTTCCCTCAGGCTCCCTGAAACAGCTAGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000349874.9
ENST00000361511.8
ENST00000379962.3
ENST00000470157.1
CDS GCA 72 bp TTTAAGACAGAGTGTGAAAAGTGCCTCCCTTTAAGCTaGGAGGAACCACTCTTAGCCGATCCTCTTCAGTCA +
Preference number: 6 (lower is better)
Translates to: FKTECEKCLPLS*EEPLLADPLQS
Trigger: TGACTGAAGAGGATCGGCTAAGAGTGGTTCCTCGCAGCTTAAAGGGAGGCACTTTTCACACTCTGTCTTAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENST00000349874.9
ENST00000361511.8
ENST00000471570.5
ENST00000472826.5
ENST00000496075.2
ENST00000496616.5
CDS CCA 72 bp CTTCGAGTCAGTGTCATGGTCTCTGTTTGTTTCCGTTaGTGGTATCAGCACAGATTTCATCTTGTTCCTCTC +
Preference number: 6 (lower is better)
Translates to: LRVSVMVSVCFR*WYQHRFHLVPL
Trigger: GAGAGGAACAAGATGAAATCTGTGCTGATACCACCAACGGAAACAAACAGAGACCATGACACTGACTCGAAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000349874.9
ENST00000361511.8
ENST00000379962.3
ENST00000496075.2
CDS CAA 72 bp TCGGAAGTTTCAAACCAGATTCGTTTGAAACTGGTTTaGCTCAGTTTGGGTCGGATCTTCTGCCACAGGCAA +
Preference number: 6 (lower is better)
Translates to: SEVSNQIRLKLV*LSLGRIFCHRQ
Trigger: TTGCCTGTGGCAGAAGATCCGACCCAAACTGAGCAAAACCAGTTTCAAACGAATCTGGTTTGAAACTTCCGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000486029.1
CDS CAA 90 bp CTTTATTGTGCTTCGAGTCAGTGTCATGGTCTCTGTTTGTTTCCGTaGGTGGTATCAGCACAGATTTCATCTTGTTCCTCTCTACACGGT +
Preference number: 6 (lower is better)
Translates to: LYCASSQCHGLCLFP*VVSAQISSCSSLHG
Trigger: ACCGTGTAGAGAGGAACAAGATGAAATCTGTGCTGATACCACCAACGGAAACAAACAGAGACCATGACACTGACTCGAAGCACAATAAAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000349874.9
ENST00000361511.8
ENST00000379962.3
ENST00000496075.2
CDS GCA 72 bp AGTATCCACTCTTTGGCGAAGAGGCTGAAAGCACGTTaGTTTAGTTACTTGGTACTGGAAAAATCGAGGAGT +
Preference number: 6 (lower is better)
Translates to: SIHSLAKRLKAR*FSYLVLEKSRS
Trigger: ACTCCTCGATTTTTCCAGTACCAAGTAACTAAAGCAACGTGCTTTCAGCCTCTTCGCCAAAGAGTGGATACT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000349874.9
ENST00000361511.8
ENST00000379962.3
CDS CCA 72 bp AATCTTCGTGGTTCCCTCTGTTCAAGTGCAGGTCATTaGGGTAGACAAGAAAACTCACACACAGGATCATTA +
Preference number: 6 (lower is better)
Translates to: NLRGSLCSSAGH*GRQENSHTGSL
Trigger: TAATGATCCTGTGTGTGAGTTTTCTTGTCTACCCCAATGACCTGCACTTGAACAGAGGGAACCACGAAGATT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000349874.9
ENST00000361511.8
ENST00000379962.3
ENST00000496075.2
CDS CAA 72 bp TTGGCGAAGAGGCTGAAAGCACGTTGCTTTAGTTACTaGGTACTGGAAAAATCGAGGAGTTGTACCAGAACA +
Preference number: 6 (lower is better)
Translates to: LAKRLKARCFSY*VLEKSRSCTRT
Trigger: TGTTCTGGTACAACTCCTCGATTTTTCCAGTACCAAGTAACTAAAGCAACGTGCTTTCAGCCTCTTCGCCAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000349874.9
ENST00000361511.8
ENST00000379962.3
CDS CAA 72 bp TCAAACCAGATTCGTTTGAAACTGGTTTTGCTCAGTTaGGGTCGGATCTTCTGCCACAGGCAACTACAAGAT +
Preference number: 6 (lower is better)
Translates to: SNQIRLKLVLLS*GRIFCHRQLQD
Trigger: ATCTTGTAGTTGCCTGTGGCAGAAGATCCGACCCAAACTGAGCAAAACCAGTTTCAAACGAATCTGGTTTGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000486029.1
CDS CAA 90 bp CCCATGCAAATCACCACAGATTGTTACCTCTTTGGAGGGAGAAGTTaGTATGTGAGTGAAATTCGGCATTTGCTTCAGGACTTTCTTGGT +
Preference number: 6 (lower is better)
Translates to: PMQITTDCYLFGGRS*YVSEIRHLLQDFLG
Trigger: ACCAAGAAAGTCCTGAAGCAAATGCCGAATTTCACTCACATACAAACTTCTCCCTCCAAAGAGGTAACAATCTGTGGTGATTTGCATGGG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENST00000349874.9
ENST00000361511.8
ENST00000379962.3
ENST00000472826.5
ENST00000496075.2
CDS CAA 90 bp CGAGTAAGGTCACTTTTTCGTGAAATCACTCTCTCTCTTAATATCTaGATGGCGCTGTTTTCCATAGTATCCACTCTTTGGCGAAGAGGC +
Preference number: 6 (lower is better)
Translates to: RVRSLFREITLSLNI*MALFSIVSTLWRRG
Trigger: GCCTCTTCGCCAAAGAGTGGATACTATGGAAAACAGCGCCATCAAGATATTAAGAGAGAGAGTGATTTCACGAAAAAGTGACCTTACTCG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000349874.9
ENST00000361511.8
ENST00000379962.3
CDS GCA 72 bp AATTCAACTTCTGATTTTAAGACAGAGTGTGAAAAGTaGCTCCCTTTAAGCTGCGAGGAACCACTCTTAGCC +
Preference number: 6 (lower is better)
Translates to: NSTSDFKTECEK*LPLSCEEPLLA
Trigger: GGCTAAGAGTGGTTCCTCGCAGCTTAAAGGGAGGCACTTTTCACACTCTGTCTTAAAATCAGAAGTTGAATT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENST00000349874.9
ENST00000361511.8
ENST00000471570.5
ENST00000472826.5
ENST00000496075.2
ENST00000496616.5
CDS CCA 72 bp CAACTGGTATTTATTAAGAATCTTGGAAGTAACATCTaGTCCAAAATAGCAGCCCCCTCCTCGGCACGTATT +
Preference number: 6 (lower is better)
Translates to: QLVFIKNLGSNI*SKIAAPSSARI
Trigger: AATACGTGCCGAGGAGGGGGCTGCTATTTTGGACCAGATGTTACTTCCAAGATTCTTAATAAATACCAGTTG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000361511.8
ENST00000379962.3
CDS CAA 72 bp ATCACCACAGATTGTTACCTCTTTGGAGGGAGAAGTTaGTATGTGAGTGAAATTCGGCATTTGCTTCAGGAC +
Preference number: 6 (lower is better)
Translates to: ITTDCYLFGGRS*YVSEIRHLLQD
Trigger: GTCCTGAAGCAAATGCCGAATTTCACTCACATACAAACTTCTCCCTCCAAAGAGGTAACAATCTGTGGTGAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENST00000349874.9
ENST00000361511.8
ENST00000379962.3
ENST00000472826.5
ENST00000496075.2
CDS CAA 72 bp GAGGTAGATTCTTCGGAAGTTTCAAACCAGATTCGTTaGAAACTGGTTTTGCTCAGTTTGGGTCGGATCTTC +
Preference number: 6 (lower is better)
Translates to: EVDSSEVSNQIR*KLVLLSLGRIF
Trigger: GAAGATCCGACCCAAACTGAGCAAAACCAGTTTCAAACGAATCTGGTTTGAAACTTCCGAAGAATCTACCTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000486029.1
CDS TCA 72 bp CAGATTGTTACCTCTTTGGAGGGAGAAGTTTGTATGTaGGTGAAATTCGGCATTTGCTTCAGGACTTTCTTG +
Preference number: 6 (lower is better)
Translates to: QIVTSLEGEVCM*VKFGICFRTFL
Trigger: CAAGAAAGTCCTGAAGCAAATGCCGAATTTCACTCACATACAAACTTCTCCCTCCAAAGAGGTAACAATCTG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENST00000349874.9
ENST00000361511.8
ENST00000379962.3
ENST00000472826.5
ENST00000496075.2
CDS GCA 72 bp CTTCCATGTGCATTAAAAGTCACACCTACTTTATTGTaGTTCGAGTCAGTGTCATGGTCTCTGTTTGTTTCC +
Preference number: 6 (lower is better)
Translates to: LPCALKVTPTLL*FESVSWSLFVS
Trigger: GGAAACAAACAGAGACCATGACACTGACTCGAAGCACAATAAAGTAGGTGTGACTTTTAATGCACATGGAAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000349874.9
ENST00000361511.8
ENST00000379962.3
CDS CCA 72 bp TTCTGGAAGCTGGACATGTATTCAACGTTTCCATTTTaGTCTATGTTTACCAGATTCGAACTGAGGGATCTC +
Preference number: 6 (lower is better)
Translates to: FWKLDMYSTFPF*SMFTRFELRDL
Trigger: GAGATCCCTCAGTTCGAATCTGGTAAACATAGACCAAAATGGAAACGTTGAATACATGTCCAGCTTCCAGAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000349874.9
ENST00000361511.8
ENST00000379962.3
CDS TCA 72 bp ACTGGAAAAATCGAGGAGTTGTACCAGAACATAGTTTaGTGTAAGCTCCTCGATTGCTGCCTTCTTCATAAT +
Preference number: 6 (lower is better)
Translates to: TGKIEELYQNIV*CKLLDCCLLHN
Trigger: ATTATGAAGAAGGCAGCAATCGAGGAGCTTACATCAAACTATGTTCTGGTACAACTCCTCGATTTTTCCAGT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000349874.9
ENST00000361511.8
ENST00000379962.3
CDS CAA 72 bp ATTCTGGAAGCTGGACATGTATTCAACGTTTCCATTTaGGTCTATGTTTACCAGATTCGAACTGAGGGATCT +
Preference number: 6 (lower is better)
Translates to: ILEAGHVFNVSI*VYVYQIRTEGS
Trigger: AGATCCCTCAGTTCGAATCTGGTAAACATAGACCAAAATGGAAACGTTGAATACATGTCCAGCTTCCAGAAT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000349874.9
ENST00000361511.8
ENST00000379962.3
CDS CAA 90 bp TTTGTTTTGATTCTTCCATGTGCATTAAAAGTCACACCTACTTTATaGTGCTTCGAGTCAGTGTCATGGTCTCTGTTTGTTTCCGTTGGT +
Preference number: 6 (lower is better)
Translates to: FVLILPCALKVTPTL*CFESVSWSLFVSVG
Trigger: ACCAACGGAAACAAACAGAGACCATGACACTGACTCGAAGCACAATAAAGTAGGTGTGACTTTTAATGCACATGGAAGAATCAAAACAAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000349874.9
ENST00000361511.8
ENST00000379962.3
CDS CCA 72 bp CTTGTACAGGTTTTTCAATGCGGATATTCTGGAAGCTaGACATGTATTCAACGTTTCCATTTTGGTCTATGT +
Preference number: 6 (lower is better)
Translates to: LVQVFQCGYSGS*TCIQRFHFGLC
Trigger: ACATAGACCAAAATGGAAACGTTGAATACATGTCCAGCTTCCAGAATATCCGCATTGAAAAACCTGTACAAG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000349874.9
ENST00000361511.8
ENST00000379962.3
CDS CAA 72 bp ATTCTTCCATGTGCATTAAAAGTCACACCTACTTTATaGTGCTTCGAGTCAGTGTCATGGTCTCTGTTTGTT +
Preference number: 6 (lower is better)
Translates to: ILPCALKVTPTL*CFESVSWSLFV
Trigger: AACAAACAGAGACCATGACACTGACTCGAAGCACAATAAAGTAGGTGTGACTTTTAATGCACATGGAAGAAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000349874.9
ENST00000361511.8
ENST00000379962.3
CDS CAA 72 bp TCACTTTTTCGTGAAATCACTCTCTCTCTTAATATCTaGATGGCGCTGTTTTCCATAGTATCCACTCTTTGG +
Preference number: 6 (lower is better)
Translates to: SLFREITLSLNI*MALFSIVSTLW
Trigger: CCAAAGAGTGGATACTATGGAAAACAGCGCCATCAAGATATTAAGAGAGAGAGTGATTTCACGAAAAAGTGA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000349874.9
ENST00000361511.8
ENST00000379962.3
CDS CAA 90 bp TCCCATTCATGCTCTGTTAAGTGTTCAGTAGGAGATCCATTTGTTTaGATTCTTCCATGTGCATTAAAAGTCACACCTACTTTATTGTGC +
Preference number: 6 (lower is better)
Translates to: SHSCSVKCSVGDPFV*ILPCALKVTPTLLC
Trigger: GCACAATAAAGTAGGTGTGACTTTTAATGCACATGGAAGAATCAAAACAAATGGATCTCCTACTGAACACTTAACAGAGCATGAATGGGA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000349874.9
ENST00000361511.8
ENST00000379962.3
CDS CAA 90 bp GCTTCCATCTTTGTTCAAGTCCATTATGTTGGCAAGCTTATTGACTaGGGAATCATCAATGTGAACATTGTAGTGAGAACTAAAAAGTTT +
Preference number: 6 (lower is better)
Translates to: ASIFVQVHYVGKLID*GIINVNIVVRTKKF
Trigger: AAACTTTTTAGTTCTCACTACAATGTTCACATTGATGATTCCCAAGTCAATAAGCTTGCCAACATAATGGACTTGAACAAAGATGGAAGC
36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENST00000349874.9
ENST00000361511.8
ENST00000379962.3
ENST00000470157.1
CDS CAA 72 bp TTTGTTCAAGTCCATTATGTTGGCAAGCTTATTGACTaGGGAATCATCAATGTGAACATTGTAGTGAGAACT +
Preference number: 6 (lower is better)
Translates to: FVQVHYVGKLID*GIINVNIVVRT
Trigger: AGTTCTCACTACAATGTTCACATTGATGATTCCCAAGTCAATAAGCTTGCCAACATAATGGACTTGAACAAA
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000349874.9
ENST00000361511.8
ENST00000379962.3
ENST00000470157.1