RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for POTED (Homo sapiens)

Ensembl gene IDs: ENSG00000166351

Ensembl transcript IDs: ENST00000299443.6, ENST00000620442.4

Found 42 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS-3UTR CCA 90 bp TATAGGAGCTCAGTCATGCCTGTTTGCTTACATATAATCATGGTGGCTTTCACACTTCCTGGCATTGTATaGCCTTTATCAGAGCTGTCC +
Preference number: 4 (lower is better)
Translates to: YRSSVMPVCLHIIMVAFTLPGIV*PLSELS
Trigger: GGACAGCTCTGATAAAGGCCATACAATGCCAGGAAG...TGTGAAAGCCACCATGATTATATGTAAGCAAACAGGCATGACTGAGCTCCTATA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000620442.4
CDS GCA 90 bp GGCATGGTCCGCTTGTACAGAAGCTATGGTGTGGGCACCCGAAAGTaGCCTCTAAGCAGGTGTGGCCTGGCTGGGGTCCTGGGAGAGGCA +
Preference number: 5 (lower is better)
Translates to: GMVRLYRSYGVGTRK*PLSRCGLAGVLGEA
Trigger: TGCCTCTCCCAGGACCCCAGCCAGGCCACACCTGCTTAGAGGGCACTTTCGGGTGCCCACACCATAGCTTCTGTACAAGCGGACCATGCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000299443.6
CDS CCA 90 bp AGGTTTGGAGTCCACTGCACTGAGGGGACCAAAGTGCGGCAGCTGTaGCAGAATGCTACCAGATGCAAAAGTCCCTGCCTCCCTGTGGGC +
Preference number: 5 (lower is better)
Translates to: RFGVHCTEGTKVRQL*QNATRCKSPCLPVG
Trigger: GCCCACAGGGAGGCAGGGACTTTTGCATCTGGTAGCATTCTGCCACAGCTGCCGCACTTTGGTCCCCTCAGTGCAGTGGACTCCAAACCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000299443.6
CDS TCA 90 bp ACTGGTGGGTGTAGCTGGAGGCCTCAGGTGGGAGATCCTGTCCAGTaGCAAGGAACAGGATCAGGGGCCTGCTTACAGAAGCATTCTGGC +
Preference number: 5 (lower is better)
Translates to: TGGCSWRPQVGDPVQ*QGTGSGACLQKHSG
Trigger: GCCAGAATGCTTCTGTAAGCAGGCCCCTGATCCTGTTCCTTGTCACTGGACAGGATCTCCCACCTGAGGCCTCCAGCTACACCCACCAGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000299443.6
CDS TCA 90 bp AGGCTAGTGCGTGGCTGTAGAGGTCACCTTGCTGCAGCTCTCCATTaGTCAGGCATGGTCCGCTTGTACAGAAGCTATGGTGTGGGCACC +
Preference number: 5 (lower is better)
Translates to: RLVRGCRGHLAAALH*SGMVRLYRSYGVGT
Trigger: GGTGCCCACACCATAGCTTCTGTACAAGCGGACCATGCCTGATCAATGGAGAGCTGCAGCAAGGTGACCTCTACAGCCACGCACTAGCCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000299443.6
CDS CCA 90 bp GTGGCTGTAGAGGTCACCTTGCTGCAGCTCTCCATTGATCAGGCATaGTCCGCTTGTACAGAAGCTATGGTGTGGGCACCCGAAAGTGCC +
Preference number: 5 (lower is better)
Translates to: VAVEVTLLQLSIDQA*SACTEAMVWAPESA
Trigger: GGCACTTTCGGGTGCCCACACCATAGCTTCTGTACAAGCGGACCATGCCTGATCAATGGAGAGCTGCAGCAAGGTGACCTCTACAGCCAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000299443.6
CDS TCA 90 bp AGCAGTGAAGGTGGCTGGAGACCCTGGTTGAAAGGCTCCAGCCAGTaGTTAGAAATGTGGTTGGGGACTGGCTTAAACAAGAATCTGGCC +
Preference number: 5 (lower is better)
Translates to: SSEGGWRPWLKGSSQ*LEMWLGTGLNKNLA
Trigger: GGCCAGATTCTTGTTTAAGCCAGTCCCCAACCACATTTCTAATCACTGGCTGGAGCCTTTCAACCAGGGTCTCCAGCCACCTTCACTGCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000299443.6
CDS GCA 90 bp ATTGCCTCGTATTTTCCAGTGGCTGAAGGTATCAGCAGTGAAGCCTaGGAAAAAGCAAAGACGATAACCTGCCCTTCCCTCTGGGAGCTC +
Preference number: 5 (lower is better)
Translates to: IASYFPVAEGISSEA*EKAKTITCPSLWEL
Trigger: GAGCTCCCAGAGGGAAGGGCAGGTTATCGTCTTTGCTTTTTCGCAGGCTTCACTGCTGATACCTTCAGCCACTGGAAAATACGAGGCAAT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000299443.6
CDS GCA 90 bp TGTAGGAAGTTTCCATATAAAGGGCTGCAGTATGGAGAGGTAATGTaGAGGCTAGTGCGTGGCTGTAGAGGTCACCTTGCTGCAGCTCTC +
Preference number: 5 (lower is better)
Translates to: CRKFPYKGLQYGEVM*RLVRGCRGHLAAAL
Trigger: GAGAGCTGCAGCAAGGTGACCTCTACAGCCACGCACTAGCCTGCACATTACCTCTCCATACTGCAGCCCTTTATATGGAAACTTCCTACA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000299443.6
CDS TCA 90 bp AGCTTGTTGGAGGTGTCAATATGGTACTTAGGGTCTTTGCTCCCTTaGTATTCTGAGGGTAGCAAGGGCAGTTCCACTGCAGAGGCAGTG +
Preference number: 5 (lower is better)
Translates to: SLLEVSIWYLGSLLP*YSEGSKGSSTAEAV
Trigger: CACTGCCTCTGCAGTGGAACTGCCCTTGCTACCCTCAGAATATCAAGGGAGCAAAGACCCTAAGTACCATATTGACACCTCCAACAAGCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000299443.6
CDS CCA 90 bp AGGTATGAACCTGTTGCCAATCTGAACACACCTGTAGGATGTGACTaGAAGCAAGTTGAGAAGTCTTGCCTAGTAAGGAGGAACAGGAAT +
Preference number: 5 (lower is better)
Translates to: RYEPVANLNTPVGCD*KQVEKSCLVRRNRN
Trigger: ATTCCTGTTCCTCCTTACTAGGCAAGACTTCTCAACTTGCTTCCAGTCACATCCTACAGGTGTGTTCAGATTGGCAACAGGTTCATACCT
46% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000299443.6
CDS CCA 90 bp ATCACTTGTCTGTGTACTTCAGTGTGTTTCTGTAGTGGCTGGTGGTaGTCTTTTCTTTCCATATTTAGTGCTTCCTTCAGGAGCTCTTGT +
Preference number: 5 (lower is better)
Translates to: ITCLCTSVCFCSGWW*SFLSIFSASFRSSC
Trigger: ACAAGAGCTCCTGAAGGAAGCACTAAATATGGAAAGAAAAGACCACCACCAGCCACTACAGAAACACACTGAAGTACACAGACAAGTGAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000299443.6
CDS TCA 90 bp GTTGAATGTTGGCCTGTCTGGCTAGGTTGGGGACATTCTCATGAATaGTATTCTGAAATGTGTTTTCCAAGTTGGTTCCATTCTCATCTC +
Preference number: 5 (lower is better)
Translates to: VECWPVWLGWGHSHE*YSEMCFPSWFHSHL
Trigger: GAGATGAGAATGGAACCAACTTGGAAAACACATTTCAGAATATCATTCATGAGAATGTCCCCAACCTAGCCAGACAGGCCAACATTCAAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000299443.6
CDS CCA 90 bp TCTTTATGGGCTTATCCATCTTCAATCTTTGAGGTTGCTGACGTTTaGACAGGGTATTTTTCCTTTATTATATCTGATGACCTTGAGGAT +
Preference number: 5 (lower is better)
Translates to: SLWAYPSSIFEVADV*TGYFSFIISDDLED
Trigger: ATCCTCAAGGTCATCAGATATAATAAAGGAAAAATACCCTGTCCAAACGTCAGCAACCTCAAAGATTGAAGATGGATAAGCCCATAAAGA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000299443.6
CDS TCA 90 bp CACACACAATCACCATGTGACTGCATTATGAAAATTCTTCTAGTGTaGTTTACAGCTCTGTCAGGTCAGTTATTTTCTTCTTTATACTTG +
Preference number: 5 (lower is better)
Translates to: HTQSPCDCIMKILLV*FTALSGQLFSSLYL
Trigger: CAAGTATAAAGAAGAAAATAACTGACCTGACAGAGCTGTAAATCACACTAGAAGAATTTTCATAATGCAGTCACATGGTGATTGTGTGTG
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000299443.6
CDS TCA 72 bp GGAGGCCTGAAACCTCTGTCAGCCAGAGAACAGCAGTaGAGGTGGCTGGAGACCCTGGTTGAAAGGCTCCAG +
Preference number: 6 (lower is better)
Translates to: GGLKPLSAREQQ*RWLETLVERLQ
Trigger: CTGGAGCCTTTCAACCAGGGTCTCCAGCCACCTTCACTGCTGTTCTCTGGCTGACAGAGGTTTCAGGCCTCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000299443.6
CDS CCA 72 bp CAGGGAACACTGGTGGGTGTAGCTGGAGGCCTCAGGTaGGAGATCCTGTCCAGTGACAAGGAACAGGATCAG +
Preference number: 6 (lower is better)
Translates to: QGTLVGVAGGLR*EILSSDKEQDQ
Trigger: CTGATCCTGTTCCTTGTCACTGGACAGGATCTCCCACCTGAGGCCTCCAGCTACACCCACCAGTGTTCCCTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000299443.6
CDS TCA 72 bp TGTAGCTGGAGGCCTCAGGTGGGAGATCCTGTCCAGTaGCAAGGAACAGGATCAGGGGCCTGCTTACAGAAG +
Preference number: 6 (lower is better)
Translates to: CSWRPQVGDPVQ*QGTGSGACLQK
Trigger: CTTCTGTAAGCAGGCCCCTGATCCTGTTCCTTGTCACTGGACAGGATCTCCCACCTGAGGCCTCCAGCTACA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000299443.6
CDS CCA 72 bp AGCTGTGCTATGCCACAGGATCTCTTCTGCCCCTGGTaGGTTTGTACTCTCCAAAGCCCGCACGCTGGAATG +
Preference number: 6 (lower is better)
Translates to: SCAMPQDLFCPW*VCTLQSPHAGM
Trigger: CATTCCAGCGTGCGGGCTTTGGAGAGTACAAACCCACCAGGGGCAGAAGAGATCCTGTGGCATAGCACAGCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000299443.6
CDS GCA 72 bp CGAGGTTTGGAGTCCACTGCACTGAGGGGACCAAAGTaGGGCAGCTGTGGCAGAATGCTACCAGATGCAAAA +
Preference number: 6 (lower is better)
Translates to: RGLESTALRGPK*GSCGRMLPDAK
Trigger: TTTTGCATCTGGTAGCATTCTGCCACAGCTGCCGCACTTTGGTCCCCTCAGTGCAGTGGACTCCAAACCTCG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000299443.6
CDS CCA 72 bp AGACCTGATCTGTGCTGGGCAATCCTGCATGTGAGATaGGGCTGGTCTGACCTCAGCACTCCTAAAGTGCTG +
Preference number: 6 (lower is better)
Translates to: RPDLCWAILHVR*GWSDLSTPKVL
Trigger: CAGCACTTTAGGAGTGCTGAGGTCAGACCAGCCCCATCTCACATGCAGGATTGCCCAGCACAGATCAGGTCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000299443.6
CDS CCA 72 bp CCATTGATCAGGCATGGTCCGCTTGTACAGAAGCTATaGTGTGGGCACCCGAAAGTGCCCTCTAAGCAGGTG +
Preference number: 6 (lower is better)
Translates to: PLIRHGPLVQKL*CGHPKVPSKQV
Trigger: CACCTGCTTAGAGGGCACTTTCGGGTGCCCACACCATAGCTTCTGTACAAGCGGACCATGCCTGATCAATGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000299443.6
CDS TCA 72 bp CTCTTAGACCTGATCTGTGCTGGGCAATCCTGCATGTaGGATGGGGCTGGTCTGACCTCAGCACTCCTAAAG +
Preference number: 6 (lower is better)
Translates to: LLDLICAGQSCM*DGAGLTSALLK
Trigger: CTTTAGGAGTGCTGAGGTCAGACCAGCCCCATCTCACATGCAGGATTGCCCAGCACAGATCAGGTCTAAGAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000299443.6
CDS TCA 72 bp CGTGGCTGTAGAGGTCACCTTGCTGCAGCTCTCCATTaGTCAGGCATGGTCCGCTTGTACAGAAGCTATGGT +
Preference number: 6 (lower is better)
Translates to: RGCRGHLAAALH*SGMVRLYRSYG
Trigger: ACCATAGCTTCTGTACAAGCGGACCATGCCTGATCAATGGAGAGCTGCAGCAAGGTGACCTCTACAGCCACG
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000299443.6
CDS TCA 72 bp GGTGGCTGGAGACCCTGGTTGAAAGGCTCCAGCCAGTaGTTAGAAATGTGGTTGGGGACTGGCTTAAACAAG +
Preference number: 6 (lower is better)
Translates to: GGWRPWLKGSSQ*LEMWLGTGLNK
Trigger: CTTGTTTAAGCCAGTCCCCAACCACATTTCTAATCACTGGCTGGAGCCTTTCAACCAGGGTCTCCAGCCACC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000299443.6
CDS TCA 72 bp TGCCCTTCCCTCTGGGAGCTCTGTACCTCTGAGGTATaGACCTGTTGCCAATCTGAACACACCTGTAGGATG +
Preference number: 6 (lower is better)
Translates to: CPSLWELCTSEV*TCCQSEHTCRM
Trigger: CATCCTACAGGTGTGTTCAGATTGGCAACAGGTTCATACCTCAGAGGTACAGAGCTCCCAGAGGGAAGGGCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000299443.6
CDS GCA 72 bp AGCAGTGAAGCCTGCGAAAAAGCAAAGACGATAACCTaGCCTTCCCTCTGGGAGCTCTGTACCTCTGAGGTA +
Preference number: 6 (lower is better)
Translates to: SSEACEKAKTIT*PSLWELCTSEV
Trigger: TACCTCAGAGGTACAGAGCTCCCAGAGGGAAGGGCAGGTTATCGTCTTTGCTTTTTCGCAGGCTTCACTGCT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000299443.6
CDS CCA 72 bp AGGCTCCAGCCAGTGATTAGAAATGTGGTTGGGGACTaGCTTAAACAAGAATCTGGCCACGTTTTCGCAGGG +
Preference number: 6 (lower is better)
Translates to: RLQPVIRNVVGD*LKQESGHVFAG
Trigger: CCCTGCGAAAACGTGGCCAGATTCTTGTTTAAGCCAGTCCCCAACCACATTTCTAATCACTGGCTGGAGCCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000299443.6
CDS CCA 72 bp GTCCACTCCAGTCGCCAATTGCCTCGTATTTTCCAGTaGCTGAAGGTATCAGCAGTGAAGCCTGCGAAAAAG +
Preference number: 6 (lower is better)
Translates to: VHSSRQLPRIFQ*LKVSAVKPAKK
Trigger: CTTTTTCGCAGGCTTCACTGCTGATACCTTCAGCCACTGGAAAATACGAGGCAATTGGCGACTGGAGTGGAC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000299443.6
CDS TCA 72 bp GAGGTGTCAATATGGTACTTAGGGTCTTTGCTCCCTTaGTATTCTGAGGGTAGCAAGGGCAGTTCCACTGCA +
Preference number: 6 (lower is better)
Translates to: EVSIWYLGSLLP*YSEGSKGSSTA
Trigger: TGCAGTGGAACTGCCCTTGCTACCCTCAGAATATCAAGGGAGCAAAGACCCTAAGTACCATATTGACACCTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000299443.6
CDS GCA 72 bp TATTTTCCAGTGGCTGAAGGTATCAGCAGTGAAGCCTaGGAAAAAGCAAAGACGATAACCTGCCCTTCCCTC +
Preference number: 6 (lower is better)
Translates to: YFPVAEGISSEA*EKAKTITCPSL
Trigger: GAGGGAAGGGCAGGTTATCGTCTTTGCTTTTTCGCAGGCTTCACTGCTGATACCTTCAGCCACTGGAAAATA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000299443.6
CDS CCA 72 bp CCTGTTGCCAATCTGAACACACCTGTAGGATGTGACTaGAAGCAAGTTGAGAAGTCTTGCCTAGTAAGGAGG +
Preference number: 6 (lower is better)
Translates to: PVANLNTPVGCD*KQVEKSCLVRR
Trigger: CCTCCTTACTAGGCAAGACTTCTCAACTTGCTTCCAGTCACATCCTACAGGTGTGTTCAGATTGGCAACAGG
49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000299443.6
CDS CCA 72 bp CTTGGACTGTGTGCTTTAACTCTGGGGAACTTGTATTaGGCCACAACTTTGTTCTCTGGCTCCTCGAGGTTT +
Preference number: 6 (lower is better)
Translates to: LGLCALTLGNLY*ATTLFSGSSRF
Trigger: AAACCTCGAGGAGCCAGAGAACAAAGTTGTGGCCCAATACAAGTTCCCCAGAGTTAAAGCACACAGTCCAAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000299443.6
CDS CCA 72 bp AGACATCTCAGCCTCAGCCCAGTTCTGAACACTTGCTaGAGAGTTGATGCAGTCATTTGGAGAAAAGAAGGC +
Preference number: 6 (lower is better)
Translates to: RHLSLSPVLNTC*RVDAVIWRKEG
Trigger: GCCTTCTTTTCTCCAAATGACTGCATCAACTCTCCAGCAAGTGTTCAGAACTGGGCTGAGGCTGAGATGTCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000299443.6
CDS CCA 72 bp GCTCTGGGATTCTTTCCTCTTCTTGGTCTATTCTGTTaGATGGTCTTGCACATGAGATGGAGCTGGTCTGAC +
Preference number: 6 (lower is better)
Translates to: ALGFFPLLGLFC*MVLHMRWSWSD
Trigger: GTCAGACCAGCTCCATCTCATGTGCAAGACCATCCAACAGAATAGACCAAGAAGAGGAAAGAATCCCAGAGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000299443.6
CDS CAA 72 bp TCTTGGACTGTGTGCTTTAACTCTGGGGAACTTGTATaGGGCCACAACTTTGTTCTCTGGCTCCTCGAGGTT +
Preference number: 6 (lower is better)
Translates to: SWTVCFNSGELV*GHNFVLWLLEV
Trigger: AACCTCGAGGAGCCAGAGAACAAAGTTGTGGCCCAATACAAGTTCCCCAGAGTTAAAGCACACAGTCCAAGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000299443.6
CDS CAA 72 bp CCAATTCTTGGACTGTGTGCTTTAACTCTGGGGAACTaGTATTGGGCCACAACTTTGTTCTCTGGCTCCTCG +
Preference number: 6 (lower is better)
Translates to: PILGLCALTLGN*YWATTLFSGSS
Trigger: CGAGGAGCCAGAGAACAAAGTTGTGGCCCAATACAAGTTCCCCAGAGTTAAAGCACACAGTCCAAGAATTGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000299443.6
CDS CCA 72 bp CACGCTGGAATGGCTAAGTTGCCCAAACAGGAAAGATaGTGGCCTGCCTCATCTTTTCTCTCAGAATTTATC +
Preference number: 6 (lower is better)
Translates to: HAGMAKLPKQER*WPASSFLSEFI
Trigger: GATAAATTCTGAGAGAAAAGATGAGGCAGGCCACCATCTTTCCTGTTTGGGCAACTTAGCCATTCCAGCGTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000299443.6
CDS GCA 72 bp AAGGTAGGTCTGGTGATAACGAATTCCCTCAGCATTTaGTTGTCTGAAAAGGATCTTGTTTCTCCTTCACTT +
Preference number: 6 (lower is better)
Translates to: KVGLVITNSLSI*LSEKDLVSPSL
Trigger: AAGTGAAGGAGAAACAAGATCCTTTTCAGACAAGCAAATGCTGAGGGAATTCGTTATCACCAGACCTACCTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000299443.6
CDS CAA 72 bp GTAGGTCTGGTGATAACGAATTCCCTCAGCATTTGCTaGTCTGAAAAGGATCTTGTTTCTCCTTCACTTATG +
Preference number: 6 (lower is better)
Translates to: VGLVITNSLSIC*SEKDLVSPSLM
Trigger: CATAAGTGAAGGAGAAACAAGATCCTTTTCAGACAAGCAAATGCTGAGGGAATTCGTTATCACCAGACCTAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000299443.6
CDS TCA 72 bp TCTGGTGATAACGAATTCCCTCAGCATTTGCTTGTCTaGAAAGGATCTTGTTTCTCCTTCACTTATGATGCT +
Preference number: 6 (lower is better)
Translates to: SGDNEFPQHLLV*KGSCFSFTYDA
Trigger: AGCATCATAAGTGAAGGAGAAACAAGATCCTTTTCAGACAAGCAAATGCTGAGGGAATTCGTTATCACCAGA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000299443.6
CDS TCA 72 bp TCACCATGTGACTGCATTATGAAAATTCTTCTAGTGTaGTTTACAGCTCTGTCAGGTCAGTTATTTTCTTCT +
Preference number: 6 (lower is better)
Translates to: SPCDCIMKILLV*FTALSGQLFSS
Trigger: AGAAGAAAATAACTGACCTGACAGAGCTGTAAATCACACTAGAAGAATTTTCATAATGCAGTCACATGGTGA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000299443.6