Pregenerated sensors for POTED (Homo sapiens)
Ensembl gene IDs: ENSG00000166351Ensembl transcript IDs: ENST00000299443.6, ENST00000620442.4
Found 42 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
Type | Sensor | Details |
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CDS-3UTR CCA 90 bp | TATAGGAGCTCAGTCATGCCTGTTTGCTTACATATAATCATGGTGGCTTTCACACTTCCTGGCATTGTATaGCCTTTATCAGAGCTGTCC | + |
Preference number: 4 (lower is better) Translates to: YRSSVMPVCLHIIMVAFTLPGIV*PLSELS Trigger: GGACAGCTCTGATAAAGGCCATACAATGCCAGGAAG...TGTGAAAGCCACCATGATTATATGTAAGCAAACAGGCATGACTGAGCTCCTATA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000620442.4 |
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CDS GCA 90 bp | GGCATGGTCCGCTTGTACAGAAGCTATGGTGTGGGCACCCGAAAGTaGCCTCTAAGCAGGTGTGGCCTGGCTGGGGTCCTGGGAGAGGCA | + |
Preference number: 5 (lower is better) Translates to: GMVRLYRSYGVGTRK*PLSRCGLAGVLGEA Trigger: TGCCTCTCCCAGGACCCCAGCCAGGCCACACCTGCTTAGAGGGCACTTTCGGGTGCCCACACCATAGCTTCTGTACAAGCGGACCATGCC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000299443.6 |
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CDS CCA 90 bp | AGGTTTGGAGTCCACTGCACTGAGGGGACCAAAGTGCGGCAGCTGTaGCAGAATGCTACCAGATGCAAAAGTCCCTGCCTCCCTGTGGGC | + |
Preference number: 5 (lower is better) Translates to: RFGVHCTEGTKVRQL*QNATRCKSPCLPVG Trigger: GCCCACAGGGAGGCAGGGACTTTTGCATCTGGTAGCATTCTGCCACAGCTGCCGCACTTTGGTCCCCTCAGTGCAGTGGACTCCAAACCT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000299443.6 |
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CDS TCA 90 bp | ACTGGTGGGTGTAGCTGGAGGCCTCAGGTGGGAGATCCTGTCCAGTaGCAAGGAACAGGATCAGGGGCCTGCTTACAGAAGCATTCTGGC | + |
Preference number: 5 (lower is better) Translates to: TGGCSWRPQVGDPVQ*QGTGSGACLQKHSG Trigger: GCCAGAATGCTTCTGTAAGCAGGCCCCTGATCCTGTTCCTTGTCACTGGACAGGATCTCCCACCTGAGGCCTCCAGCTACACCCACCAGT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000299443.6 |
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CDS TCA 90 bp | AGGCTAGTGCGTGGCTGTAGAGGTCACCTTGCTGCAGCTCTCCATTaGTCAGGCATGGTCCGCTTGTACAGAAGCTATGGTGTGGGCACC | + |
Preference number: 5 (lower is better) Translates to: RLVRGCRGHLAAALH*SGMVRLYRSYGVGT Trigger: GGTGCCCACACCATAGCTTCTGTACAAGCGGACCATGCCTGATCAATGGAGAGCTGCAGCAAGGTGACCTCTACAGCCACGCACTAGCCT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000299443.6 |
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CDS CCA 90 bp | GTGGCTGTAGAGGTCACCTTGCTGCAGCTCTCCATTGATCAGGCATaGTCCGCTTGTACAGAAGCTATGGTGTGGGCACCCGAAAGTGCC | + |
Preference number: 5 (lower is better) Translates to: VAVEVTLLQLSIDQA*SACTEAMVWAPESA Trigger: GGCACTTTCGGGTGCCCACACCATAGCTTCTGTACAAGCGGACCATGCCTGATCAATGGAGAGCTGCAGCAAGGTGACCTCTACAGCCAC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000299443.6 |
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CDS TCA 90 bp | AGCAGTGAAGGTGGCTGGAGACCCTGGTTGAAAGGCTCCAGCCAGTaGTTAGAAATGTGGTTGGGGACTGGCTTAAACAAGAATCTGGCC | + |
Preference number: 5 (lower is better) Translates to: SSEGGWRPWLKGSSQ*LEMWLGTGLNKNLA Trigger: GGCCAGATTCTTGTTTAAGCCAGTCCCCAACCACATTTCTAATCACTGGCTGGAGCCTTTCAACCAGGGTCTCCAGCCACCTTCACTGCT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000299443.6 |
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CDS GCA 90 bp | ATTGCCTCGTATTTTCCAGTGGCTGAAGGTATCAGCAGTGAAGCCTaGGAAAAAGCAAAGACGATAACCTGCCCTTCCCTCTGGGAGCTC | + |
Preference number: 5 (lower is better) Translates to: IASYFPVAEGISSEA*EKAKTITCPSLWEL Trigger: GAGCTCCCAGAGGGAAGGGCAGGTTATCGTCTTTGCTTTTTCGCAGGCTTCACTGCTGATACCTTCAGCCACTGGAAAATACGAGGCAAT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000299443.6 |
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CDS GCA 90 bp | TGTAGGAAGTTTCCATATAAAGGGCTGCAGTATGGAGAGGTAATGTaGAGGCTAGTGCGTGGCTGTAGAGGTCACCTTGCTGCAGCTCTC | + |
Preference number: 5 (lower is better) Translates to: CRKFPYKGLQYGEVM*RLVRGCRGHLAAAL Trigger: GAGAGCTGCAGCAAGGTGACCTCTACAGCCACGCACTAGCCTGCACATTACCTCTCCATACTGCAGCCCTTTATATGGAAACTTCCTACA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000299443.6 |
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CDS TCA 90 bp | AGCTTGTTGGAGGTGTCAATATGGTACTTAGGGTCTTTGCTCCCTTaGTATTCTGAGGGTAGCAAGGGCAGTTCCACTGCAGAGGCAGTG | + |
Preference number: 5 (lower is better) Translates to: SLLEVSIWYLGSLLP*YSEGSKGSSTAEAV Trigger: CACTGCCTCTGCAGTGGAACTGCCCTTGCTACCCTCAGAATATCAAGGGAGCAAAGACCCTAAGTACCATATTGACACCTCCAACAAGCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000299443.6 |
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CDS CCA 90 bp | AGGTATGAACCTGTTGCCAATCTGAACACACCTGTAGGATGTGACTaGAAGCAAGTTGAGAAGTCTTGCCTAGTAAGGAGGAACAGGAAT | + |
Preference number: 5 (lower is better) Translates to: RYEPVANLNTPVGCD*KQVEKSCLVRRNRN Trigger: ATTCCTGTTCCTCCTTACTAGGCAAGACTTCTCAACTTGCTTCCAGTCACATCCTACAGGTGTGTTCAGATTGGCAACAGGTTCATACCT 46% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000299443.6 |
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CDS CCA 90 bp | ATCACTTGTCTGTGTACTTCAGTGTGTTTCTGTAGTGGCTGGTGGTaGTCTTTTCTTTCCATATTTAGTGCTTCCTTCAGGAGCTCTTGT | + |
Preference number: 5 (lower is better) Translates to: ITCLCTSVCFCSGWW*SFLSIFSASFRSSC Trigger: ACAAGAGCTCCTGAAGGAAGCACTAAATATGGAAAGAAAAGACCACCACCAGCCACTACAGAAACACACTGAAGTACACAGACAAGTGAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000299443.6 |
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CDS TCA 90 bp | GTTGAATGTTGGCCTGTCTGGCTAGGTTGGGGACATTCTCATGAATaGTATTCTGAAATGTGTTTTCCAAGTTGGTTCCATTCTCATCTC | + |
Preference number: 5 (lower is better) Translates to: VECWPVWLGWGHSHE*YSEMCFPSWFHSHL Trigger: GAGATGAGAATGGAACCAACTTGGAAAACACATTTCAGAATATCATTCATGAGAATGTCCCCAACCTAGCCAGACAGGCCAACATTCAAC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000299443.6 |
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CDS CCA 90 bp | TCTTTATGGGCTTATCCATCTTCAATCTTTGAGGTTGCTGACGTTTaGACAGGGTATTTTTCCTTTATTATATCTGATGACCTTGAGGAT | + |
Preference number: 5 (lower is better) Translates to: SLWAYPSSIFEVADV*TGYFSFIISDDLED Trigger: ATCCTCAAGGTCATCAGATATAATAAAGGAAAAATACCCTGTCCAAACGTCAGCAACCTCAAAGATTGAAGATGGATAAGCCCATAAAGA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000299443.6 |
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CDS TCA 90 bp | CACACACAATCACCATGTGACTGCATTATGAAAATTCTTCTAGTGTaGTTTACAGCTCTGTCAGGTCAGTTATTTTCTTCTTTATACTTG | + |
Preference number: 5 (lower is better) Translates to: HTQSPCDCIMKILLV*FTALSGQLFSSLYL Trigger: CAAGTATAAAGAAGAAAATAACTGACCTGACAGAGCTGTAAATCACACTAGAAGAATTTTCATAATGCAGTCACATGGTGATTGTGTGTG 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000299443.6 |
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CDS TCA 72 bp | GGAGGCCTGAAACCTCTGTCAGCCAGAGAACAGCAGTaGAGGTGGCTGGAGACCCTGGTTGAAAGGCTCCAG | + |
Preference number: 6 (lower is better) Translates to: GGLKPLSAREQQ*RWLETLVERLQ Trigger: CTGGAGCCTTTCAACCAGGGTCTCCAGCCACCTTCACTGCTGTTCTCTGGCTGACAGAGGTTTCAGGCCTCC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000299443.6 |
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CDS CCA 72 bp | CAGGGAACACTGGTGGGTGTAGCTGGAGGCCTCAGGTaGGAGATCCTGTCCAGTGACAAGGAACAGGATCAG | + |
Preference number: 6 (lower is better) Translates to: QGTLVGVAGGLR*EILSSDKEQDQ Trigger: CTGATCCTGTTCCTTGTCACTGGACAGGATCTCCCACCTGAGGCCTCCAGCTACACCCACCAGTGTTCCCTG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000299443.6 |
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CDS TCA 72 bp | TGTAGCTGGAGGCCTCAGGTGGGAGATCCTGTCCAGTaGCAAGGAACAGGATCAGGGGCCTGCTTACAGAAG | + |
Preference number: 6 (lower is better) Translates to: CSWRPQVGDPVQ*QGTGSGACLQK Trigger: CTTCTGTAAGCAGGCCCCTGATCCTGTTCCTTGTCACTGGACAGGATCTCCCACCTGAGGCCTCCAGCTACA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000299443.6 |
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CDS CCA 72 bp | AGCTGTGCTATGCCACAGGATCTCTTCTGCCCCTGGTaGGTTTGTACTCTCCAAAGCCCGCACGCTGGAATG | + |
Preference number: 6 (lower is better) Translates to: SCAMPQDLFCPW*VCTLQSPHAGM Trigger: CATTCCAGCGTGCGGGCTTTGGAGAGTACAAACCCACCAGGGGCAGAAGAGATCCTGTGGCATAGCACAGCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000299443.6 |
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CDS GCA 72 bp | CGAGGTTTGGAGTCCACTGCACTGAGGGGACCAAAGTaGGGCAGCTGTGGCAGAATGCTACCAGATGCAAAA | + |
Preference number: 6 (lower is better) Translates to: RGLESTALRGPK*GSCGRMLPDAK Trigger: TTTTGCATCTGGTAGCATTCTGCCACAGCTGCCGCACTTTGGTCCCCTCAGTGCAGTGGACTCCAAACCTCG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000299443.6 |
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CDS CCA 72 bp | AGACCTGATCTGTGCTGGGCAATCCTGCATGTGAGATaGGGCTGGTCTGACCTCAGCACTCCTAAAGTGCTG | + |
Preference number: 6 (lower is better) Translates to: RPDLCWAILHVR*GWSDLSTPKVL Trigger: CAGCACTTTAGGAGTGCTGAGGTCAGACCAGCCCCATCTCACATGCAGGATTGCCCAGCACAGATCAGGTCT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000299443.6 |
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CDS CCA 72 bp | CCATTGATCAGGCATGGTCCGCTTGTACAGAAGCTATaGTGTGGGCACCCGAAAGTGCCCTCTAAGCAGGTG | + |
Preference number: 6 (lower is better) Translates to: PLIRHGPLVQKL*CGHPKVPSKQV Trigger: CACCTGCTTAGAGGGCACTTTCGGGTGCCCACACCATAGCTTCTGTACAAGCGGACCATGCCTGATCAATGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000299443.6 |
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CDS TCA 72 bp | CTCTTAGACCTGATCTGTGCTGGGCAATCCTGCATGTaGGATGGGGCTGGTCTGACCTCAGCACTCCTAAAG | + |
Preference number: 6 (lower is better) Translates to: LLDLICAGQSCM*DGAGLTSALLK Trigger: CTTTAGGAGTGCTGAGGTCAGACCAGCCCCATCTCACATGCAGGATTGCCCAGCACAGATCAGGTCTAAGAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000299443.6 |
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CDS TCA 72 bp | CGTGGCTGTAGAGGTCACCTTGCTGCAGCTCTCCATTaGTCAGGCATGGTCCGCTTGTACAGAAGCTATGGT | + |
Preference number: 6 (lower is better) Translates to: RGCRGHLAAALH*SGMVRLYRSYG Trigger: ACCATAGCTTCTGTACAAGCGGACCATGCCTGATCAATGGAGAGCTGCAGCAAGGTGACCTCTACAGCCACG 54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000299443.6 |
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CDS TCA 72 bp | GGTGGCTGGAGACCCTGGTTGAAAGGCTCCAGCCAGTaGTTAGAAATGTGGTTGGGGACTGGCTTAAACAAG | + |
Preference number: 6 (lower is better) Translates to: GGWRPWLKGSSQ*LEMWLGTGLNK Trigger: CTTGTTTAAGCCAGTCCCCAACCACATTTCTAATCACTGGCTGGAGCCTTTCAACCAGGGTCTCCAGCCACC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000299443.6 |
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CDS TCA 72 bp | TGCCCTTCCCTCTGGGAGCTCTGTACCTCTGAGGTATaGACCTGTTGCCAATCTGAACACACCTGTAGGATG | + |
Preference number: 6 (lower is better) Translates to: CPSLWELCTSEV*TCCQSEHTCRM Trigger: CATCCTACAGGTGTGTTCAGATTGGCAACAGGTTCATACCTCAGAGGTACAGAGCTCCCAGAGGGAAGGGCA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000299443.6 |
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CDS GCA 72 bp | AGCAGTGAAGCCTGCGAAAAAGCAAAGACGATAACCTaGCCTTCCCTCTGGGAGCTCTGTACCTCTGAGGTA | + |
Preference number: 6 (lower is better) Translates to: SSEACEKAKTIT*PSLWELCTSEV Trigger: TACCTCAGAGGTACAGAGCTCCCAGAGGGAAGGGCAGGTTATCGTCTTTGCTTTTTCGCAGGCTTCACTGCT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000299443.6 |
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CDS CCA 72 bp | AGGCTCCAGCCAGTGATTAGAAATGTGGTTGGGGACTaGCTTAAACAAGAATCTGGCCACGTTTTCGCAGGG | + |
Preference number: 6 (lower is better) Translates to: RLQPVIRNVVGD*LKQESGHVFAG Trigger: CCCTGCGAAAACGTGGCCAGATTCTTGTTTAAGCCAGTCCCCAACCACATTTCTAATCACTGGCTGGAGCCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000299443.6 |
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CDS CCA 72 bp | GTCCACTCCAGTCGCCAATTGCCTCGTATTTTCCAGTaGCTGAAGGTATCAGCAGTGAAGCCTGCGAAAAAG | + |
Preference number: 6 (lower is better) Translates to: VHSSRQLPRIFQ*LKVSAVKPAKK Trigger: CTTTTTCGCAGGCTTCACTGCTGATACCTTCAGCCACTGGAAAATACGAGGCAATTGGCGACTGGAGTGGAC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000299443.6 |
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CDS TCA 72 bp | GAGGTGTCAATATGGTACTTAGGGTCTTTGCTCCCTTaGTATTCTGAGGGTAGCAAGGGCAGTTCCACTGCA | + |
Preference number: 6 (lower is better) Translates to: EVSIWYLGSLLP*YSEGSKGSSTA Trigger: TGCAGTGGAACTGCCCTTGCTACCCTCAGAATATCAAGGGAGCAAAGACCCTAAGTACCATATTGACACCTC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000299443.6 |
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CDS GCA 72 bp | TATTTTCCAGTGGCTGAAGGTATCAGCAGTGAAGCCTaGGAAAAAGCAAAGACGATAACCTGCCCTTCCCTC | + |
Preference number: 6 (lower is better) Translates to: YFPVAEGISSEA*EKAKTITCPSL Trigger: GAGGGAAGGGCAGGTTATCGTCTTTGCTTTTTCGCAGGCTTCACTGCTGATACCTTCAGCCACTGGAAAATA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000299443.6 |
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CDS CCA 72 bp | CCTGTTGCCAATCTGAACACACCTGTAGGATGTGACTaGAAGCAAGTTGAGAAGTCTTGCCTAGTAAGGAGG | + |
Preference number: 6 (lower is better) Translates to: PVANLNTPVGCD*KQVEKSCLVRR Trigger: CCTCCTTACTAGGCAAGACTTCTCAACTTGCTTCCAGTCACATCCTACAGGTGTGTTCAGATTGGCAACAGG 49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000299443.6 |
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CDS CCA 72 bp | CTTGGACTGTGTGCTTTAACTCTGGGGAACTTGTATTaGGCCACAACTTTGTTCTCTGGCTCCTCGAGGTTT | + |
Preference number: 6 (lower is better) Translates to: LGLCALTLGNLY*ATTLFSGSSRF Trigger: AAACCTCGAGGAGCCAGAGAACAAAGTTGTGGCCCAATACAAGTTCCCCAGAGTTAAAGCACACAGTCCAAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000299443.6 |
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CDS CCA 72 bp | AGACATCTCAGCCTCAGCCCAGTTCTGAACACTTGCTaGAGAGTTGATGCAGTCATTTGGAGAAAAGAAGGC | + |
Preference number: 6 (lower is better) Translates to: RHLSLSPVLNTC*RVDAVIWRKEG Trigger: GCCTTCTTTTCTCCAAATGACTGCATCAACTCTCCAGCAAGTGTTCAGAACTGGGCTGAGGCTGAGATGTCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000299443.6 |
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CDS CCA 72 bp | GCTCTGGGATTCTTTCCTCTTCTTGGTCTATTCTGTTaGATGGTCTTGCACATGAGATGGAGCTGGTCTGAC | + |
Preference number: 6 (lower is better) Translates to: ALGFFPLLGLFC*MVLHMRWSWSD Trigger: GTCAGACCAGCTCCATCTCATGTGCAAGACCATCCAACAGAATAGACCAAGAAGAGGAAAGAATCCCAGAGC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000299443.6 |
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CDS CAA 72 bp | TCTTGGACTGTGTGCTTTAACTCTGGGGAACTTGTATaGGGCCACAACTTTGTTCTCTGGCTCCTCGAGGTT | + |
Preference number: 6 (lower is better) Translates to: SWTVCFNSGELV*GHNFVLWLLEV Trigger: AACCTCGAGGAGCCAGAGAACAAAGTTGTGGCCCAATACAAGTTCCCCAGAGTTAAAGCACACAGTCCAAGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000299443.6 |
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CDS CAA 72 bp | CCAATTCTTGGACTGTGTGCTTTAACTCTGGGGAACTaGTATTGGGCCACAACTTTGTTCTCTGGCTCCTCG | + |
Preference number: 6 (lower is better) Translates to: PILGLCALTLGN*YWATTLFSGSS Trigger: CGAGGAGCCAGAGAACAAAGTTGTGGCCCAATACAAGTTCCCCAGAGTTAAAGCACACAGTCCAAGAATTGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000299443.6 |
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CDS CCA 72 bp | CACGCTGGAATGGCTAAGTTGCCCAAACAGGAAAGATaGTGGCCTGCCTCATCTTTTCTCTCAGAATTTATC | + |
Preference number: 6 (lower is better) Translates to: HAGMAKLPKQER*WPASSFLSEFI Trigger: GATAAATTCTGAGAGAAAAGATGAGGCAGGCCACCATCTTTCCTGTTTGGGCAACTTAGCCATTCCAGCGTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000299443.6 |
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CDS GCA 72 bp | AAGGTAGGTCTGGTGATAACGAATTCCCTCAGCATTTaGTTGTCTGAAAAGGATCTTGTTTCTCCTTCACTT | + |
Preference number: 6 (lower is better) Translates to: KVGLVITNSLSI*LSEKDLVSPSL Trigger: AAGTGAAGGAGAAACAAGATCCTTTTCAGACAAGCAAATGCTGAGGGAATTCGTTATCACCAGACCTACCTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000299443.6 |
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CDS CAA 72 bp | GTAGGTCTGGTGATAACGAATTCCCTCAGCATTTGCTaGTCTGAAAAGGATCTTGTTTCTCCTTCACTTATG | + |
Preference number: 6 (lower is better) Translates to: VGLVITNSLSIC*SEKDLVSPSLM Trigger: CATAAGTGAAGGAGAAACAAGATCCTTTTCAGACAAGCAAATGCTGAGGGAATTCGTTATCACCAGACCTAC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000299443.6 |
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CDS TCA 72 bp | TCTGGTGATAACGAATTCCCTCAGCATTTGCTTGTCTaGAAAGGATCTTGTTTCTCCTTCACTTATGATGCT | + |
Preference number: 6 (lower is better) Translates to: SGDNEFPQHLLV*KGSCFSFTYDA Trigger: AGCATCATAAGTGAAGGAGAAACAAGATCCTTTTCAGACAAGCAAATGCTGAGGGAATTCGTTATCACCAGA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000299443.6 |
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CDS TCA 72 bp | TCACCATGTGACTGCATTATGAAAATTCTTCTAGTGTaGTTTACAGCTCTGTCAGGTCAGTTATTTTCTTCT | + |
Preference number: 6 (lower is better) Translates to: SPCDCIMKILLV*FTALSGQLFSS Trigger: AGAAGAAAATAACTGACCTGACAGAGCTGTAAATCACACTAGAAGAATTTTCATAATGCAGTCACATGGTGA 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000299443.6 |