RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for POLR3D (Homo sapiens)

Ensembl gene IDs: ENSG00000168495

Ensembl transcript IDs: ENST00000306433.9, ENST00000397802.8, ENST00000517789.2, ENST00000518039.1, ENST00000519237.5

Found 351 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp GAGGTTGCTGGAGCTGCTGACGGTTATTCCCGGATAAGGGCAGAATaGGAAGGCTCCTGTACTACTGTCCACTCTGGCTGTGGACACCAT +
Preference number: 1 (lower is better)
Translates to: EVAGAADGYSRIRAE*EGSCTTVHSGCGHH
Trigger: ATGGTGTCCACAGCCAGAGTGGACAGTAGTACAGGAGCCTTCTCATTCTGCCCTTATCCGGGAATAACCGTCAGCAGCTCCAGCAACCTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000306433.9
ENST00000397802.8
3UTR GCA 90 bp CAGCAAAGGGAAGTTGTGCCATCAGCGTCTAACAGCCACACACGCTaGCGCATGAGACCTTTTTCTAACCTGCAAACGTCTCCCCAGCTG +
Preference number: 1 (lower is better)
Translates to: QQREVVPSASNSHTR*RMRPFSNLQTSPQL
Trigger: CAGCTGGGGAGACGTTTGCAGGTTAGAAAAAGGTCTCATGCGGCAGCGTGTGTGGCTGTTAGACGCTGATGGCACAACTTCCCTTTGCTG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000306433.9
ENST00000397802.8
3UTR TCA 90 bp CTGTACTACTGTCCACTCTGGCTGTGGACACCATCATTTGCAGAATaGTGCTTGGCGCAGGAGCAGCCATTCTGCAATACTGAGGATGGC +
Preference number: 1 (lower is better)
Translates to: LYYCPLWLWTPSFAE*CLAQEQPFCNTEDG
Trigger: GCCATCCTCAGTATTGCAGAATGGCTGCTCCTGCGCCAAGCATCATTCTGCAAATGATGGTGTCCACAGCCAGAGTGGACAGTAGTACAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000306433.9
ENST00000397802.8
3UTR TCA 90 bp CAGCACAGGTTTCCAAGGAACCCTTTCTGCTCCAGTCCTCTACAGTaGGAAGAGCCCAGAATAACACTGTCCAATGGAGCTGACATGAGC +
Preference number: 1 (lower is better)
Translates to: QHRFPRNPFCSSPLQ*EEPRITLSNGADMS
Trigger: GCTCATGTCAGCTCCATTGGACAGTGTTATTCTGGGCTCTTCTCACTGTAGAGGACTGGAGCAGAAAGGGTTCCTTGGAAACCTGTGCTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000306433.9
ENST00000397802.8
3UTR TCA 90 bp GCCTGCTGGTTCTGGCCTTGTGCAGTTTTCATCTATAATAGCCCATaGATCCTCACGCCAACCCTGGAGGTAGGTATCATCCCCATTTGT +
Preference number: 1 (lower is better)
Translates to: ACWFWPCAVFIYNSP*ILTPTLEVGIIPIC
Trigger: ACAAATGGGGATGATACCTACCTCCAGGGTTGGCGTGAGGATTCATGGGCTATTATAGATGAAAACTGCACAAGGCCAGAACCAGCAGGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000306433.9
ENST00000397802.8
3UTR CCA 90 bp GTTACTGGTGGAGTCAGATTCAAACCCAACCGTGACTCGACAGCCTaGACTCTGCCACTTAAACATGTAGTTAGAAAAGTGTGCAAGCCT +
Preference number: 1 (lower is better)
Translates to: VTGGVRFKPNRDSTA*TLPLKHVVRKVCKP
Trigger: AGGCTTGCACACTTTTCTAACTACATGTTTAAGTGGCAGAGTCCAGGCTGTCGAGTCACGGTTGGGTTTGAATCTGACTCCACCAGTAAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000306433.9
ENST00000397802.8
3UTR TCA 90 bp GTCATCTGTCCATATTCCTTGGTAGAAATGCATGCCTCAGGGGCCTaGCCAAGAAGGTGGACTCTCCTCTCTTTTCCCACACTTATTAAT +
Preference number: 1 (lower is better)
Translates to: VICPYSLVEMHASGA*PRRWTLLSFPTLIN
Trigger: ATTAATAAGTGTGGGAAAAGAGAGGAGAGTCCACCTTCTTGGTCAGGCCCCTGAGGCATGCATTTCTACCAAGGAATATGGACAGATGAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000306433.9
ENST00000397802.8
3UTR GCA 90 bp TTTTTGTTAGCAATATATGACTTCGGCTCATACATGAGTACTAACTaGAAAGGAAAGAGTGCAGGGAACATGTCCTGGGCCCAACATGTC +
Preference number: 1 (lower is better)
Translates to: FLLAIYDFGSYMSTN*KGKSAGNMSWAQHV
Trigger: GACATGTTGGGCCCAGGACATGTTCCCTGCACTCTTTCCTTTGCAGTTAGTACTCATGTATGAGCCGAAGTCATATATTGCTAACAAAAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000306433.9
ENST00000397802.8
3UTR GCA 90 bp GGACTCTCCTCTCTTTTCCCACACTTATTAATAAGACCTAATTTGTaGATCAGGGATCTGAGACAGGTTGTGAGGACTTTGATACGGAGT +
Preference number: 1 (lower is better)
Translates to: GLSSLFPHLLIRPNL*IRDLRQVVRTLIRS
Trigger: ACTCCGTATCAAAGTCCTCACAACCTGTCTCAGATCCCTGATGCACAAATTAGGTCTTATTAATAAGTGTGGGAAAAGAGAGGAGAGTCC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000306433.9
ENST00000397802.8
3UTR GCA 90 bp GTATTTAACAGAAAGCATATACACAGATGCAGGGAGCAACAAATTTaGATCCACTTGCACTCATGTATAAATTTGGCTTTGGGCTCTTCT +
Preference number: 1 (lower is better)
Translates to: VFNRKHIHRCREQQI*IHLHSCINLALGSS
Trigger: AGAAGAGCCCAAAGCCAAATTTATACATGAGTGCAAGTGGATGCAAATTTGTTGCTCCCTGCATCTGTGTATATGCTTTCTGTTAAATAC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000306433.9
ENST00000397802.8
3UTR GCA 90 bp CTATTGTTCCTTCTTTCTGTATTTAACAGAAAGCATATACACAGATaGAGGGAGCAACAAATTTGCATCCACTTGCACTCATGTATAAAT +
Preference number: 1 (lower is better)
Translates to: LLFLLSVFNRKHIHR*REQQICIHLHSCIN
Trigger: ATTTATACATGAGTGCAAGTGGATGCAAATTTGTTGCTCCCTGCATCTGTGTATATGCTTTCTGTTAAATACAGAAAGAAGGAACAATAG
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000306433.9
ENST00000397802.8
3UTR-3UTR CCA 90 bp GCCCCTGCAACCCAGCAGGCACCAAGAGAAGCCGGCCCCTTCACACAGACCCTCAGCAGGCAGCAGCCGTaGGCACAGGCGCCGTCCTCC +
Preference number: 2 (lower is better)
Translates to: APATQQAPREAGPFTQTLSRQQP*AQAPSS
Trigger: GGAGGACGGCGCCTGTGCCCACGGCTGCTGCCTGCT...GAGGGTCTGTGTGAAGGGGCCGGCTTCTCTTGGTGCCTGCTGGGTTGCAGGGGC
69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000306433.9
ENST00000397802.8
ENST00000518039.1
3UTR-3UTR GCA 90 bp GCAGTCCACACGCTTCCTGCCCCTGCAACCCAGCAGGCACCAAGAGAAGCCGGCAGTCCACACGCTTCCTaGCCCTGCAACCCAGCAGGC +
Preference number: 2 (lower is better)
Translates to: AVHTLPAPATQQAPREAGSPHAS*PCNPAG
Trigger: GCCTGCTGGGTTGCAGGGGCAGGAAGCGTGTGGACT...GCCGGCTTCTCTTGGTGCCTGCTGGGTTGCAGGGGCAGGAAGCGTGTGGACTGC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000306433.9
ENST00000397802.8
ENST00000518039.1
3UTR-3UTR CCA 90 bp GAAGCCGGCCCCTTCACACAGACCCTCCCCATCTACCCTTGGAGGATGCATCAGAGCAGGCAGCAGCCGTaGGCACAGGCGCCGTCCTCC +
Preference number: 2 (lower is better)
Translates to: EAGPFTQTLPIYPWRMHQSRQQP*AQAPSS
Trigger: GGAGGACGGCGCCTGTGCCCACGGCTGCTGCCTGCT...CTGATGCATCCTCCAAGGGTAGATGGGGAGGGTCTGTGTGAAGGGGCCGGCTTC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000306433.9
ENST00000397802.8
ENST00000518039.1
3UTR-3UTR GCA 90 bp TCTGGAGCAGGCAGCAGCCGTGGGCACAGGCGCCGTCCTCCTCCACCTGCTCATTTGCCCAAGAGGAGTTaGACCCTTCCAGACTTGCGG +
Preference number: 2 (lower is better)
Translates to: SGAGSSRGHRRRPPPPAHLPKRS*TLPDLR
Trigger: CCGCAAGTCTGGAAGGGTGCAACTCCTCTTGGGCAA...ATGAGCAGGTGGAGGAGGACGGCGCCTGTGCCCACGGCTGCTGCCTGCTCCAGA
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000518039.1
3UTR-3UTR CCA 90 bp CCTGCAACCCAGCAGGCACCAAGAGAAGCCGGCCCCTTCACACAGACCCTCCCCAAAGGCTGGAGTGAGTaGGCTCAGTGGGCCCCTTCT +
Preference number: 2 (lower is better)
Translates to: PATQQAPREAGPFTQTLPKGWSE*AQWAPS
Trigger: AGAAGGGGCCCACTGAGCCCACTCACTCCAGCCTTT...GGGGAGGGTCTGTGTGAAGGGGCCGGCTTCTCTTGGTGCCTGCTGGGTTGCAGG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENST00000306433.9
ENST00000397802.8
ENST00000518039.1
3UTR-3UTR CCA 90 bp GCCCCTGCAACCCAGCAGGCACCAAGAGAAGCCGGCCCCTTCACACAGACCCTCAAAGGCTGGAGTGAGTaGGCTCAGTGGGCCCCTTCT +
Preference number: 2 (lower is better)
Translates to: APATQQAPREAGPFTQTLKGWSE*AQWAPS
Trigger: AGAAGGGGCCCACTGAGCCCACTCACTCCAGCCTTT...GAGGGTCTGTGTGAAGGGGCCGGCTTCTCTTGGTGCCTGCTGGGTTGCAGGGGC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENST00000306433.9
ENST00000397802.8
ENST00000518039.1
3UTR-3UTR CCA 90 bp TCTGGAGCAGGCAGCAGCCGTGGGCACAGGCGCCGTCCTCCTCCACCTGCTCATCTCCCCATCTACCCTTaGAGGATGCATCAGTGGAAG +
Preference number: 2 (lower is better)
Translates to: SGAGSSRGHRRRPPPPAHLPIYP*RMHQWK
Trigger: CTTCCACTGATGCATCCTCCAAGGGTAGATGGGGAG...ATGAGCAGGTGGAGGAGGACGGCGCCTGTGCCCACGGCTGCTGCCTGCTCCAGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000306433.9
ENST00000397802.8
ENST00000518039.1
3UTR-3UTR CCA 90 bp TGCAGTCCACACGCTTCCTGCCCCTGCAACCCAGCAGGCACCAAGAGAAGCCGGAAGCCCTGGGGGACCTaGAACAATGGTTGCCAAAGG +
Preference number: 2 (lower is better)
Translates to: CSPHASCPCNPAGTKRSRKPWGT*NNGCQR
Trigger: CCTTTGGCAACCATTGTTCCAGGTCCCCCAGGGCTT...CCGGCTTCTCTTGGTGCCTGCTGGGTTGCAGGGGCAGGAAGCGTGTGGACTGCA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000306433.9
ENST00000397802.8
ENST00000518039.1
3UTR-3UTR CCA 90 bp TGCAGTCCACACGCTTCCTGCCCCTGCAACCCAGCAGGCACCAAGAGAAGCCGGCTCCCCATCTACCCTTaGAGGATGCATCAGTGGAAG +
Preference number: 2 (lower is better)
Translates to: CSPHASCPCNPAGTKRSRLPIYP*RMHQWK
Trigger: CTTCCACTGATGCATCCTCCAAGGGTAGATGGGGAG...CCGGCTTCTCTTGGTGCCTGCTGGGTTGCAGGGGCAGGAAGCGTGTGGACTGCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000306433.9
ENST00000397802.8
ENST00000518039.1
3UTR-3UTR CCA 90 bp CCAGGGGATACACTAGTCGACCCATCCCCCTTTGCCAGGGCCTGGTCCAAGAGTCACACAGGAGGCACCTaGCTAACAGGAGCCAGGAGA +
Preference number: 2 (lower is better)
Translates to: PGDTLVDPSPFARAWSKSHTGGT*LTGARR
Trigger: TCTCCTGGCTCCTGTTAGCCAGGTGCCTCCTGTGTG...ACTCTTGGACCAGGCCCTGGCAAAGGGGGATGGGTCGACTAGTGTATCCCCTGG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000306433.9
ENST00000397802.8
3UTR-3UTR CCA 90 bp AGCCGGCCCCTTCACACAGACCCTCCCCATCTACCCTTGGAGGATGCATCAGTGAAGCCCTGGGGGACCTaGAACAATGGTTGCCAAAGG +
Preference number: 2 (lower is better)
Translates to: SRPLHTDPPHLPLEDASVKPWGT*NNGCQR
Trigger: CCTTTGGCAACCATTGTTCCAGGTCCCCCAGGGCTT...CACTGATGCATCCTCCAAGGGTAGATGGGGAGGGTCTGTGTGAAGGGGCCGGCT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENST00000306433.9
ENST00000397802.8
ENST00000518039.1
3UTR-3UTR CCA 90 bp TGCAGTCCACACGCTTCCTGCCCCTGCAACCCAGCAGGCACCAAGAGAAGCCGGAGTGCCTGCTGGTTCTaGCCTTGTGCAGTTTTCATC +
Preference number: 2 (lower is better)
Translates to: CSPHASCPCNPAGTKRSRSACWF*PCAVFI
Trigger: GATGAAAACTGCACAAGGCCAGAACCAGCAGGCACT...CCGGCTTCTCTTGGTGCCTGCTGGGTTGCAGGGGCAGGAAGCGTGTGGACTGCA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000306433.9
ENST00000397802.8
3UTR-3UTR CCA 90 bp CGGTTCTTCCTGAGCCCCTATGGTTCATACTGTCCCAGAGGCCAGGTGCCACGAGCAGGGAACATGTCCTaGGCCCAACATGTCCCCCAA +
Preference number: 2 (lower is better)
Translates to: RFFLSPYGSYCPRGQVPRAGNMS*AQHVPQ
Trigger: TTGGGGGACATGTTGGGCCCAGGACATGTTCCCTGC...TCGTGGCACCTGGCCTCTGGGACAGTATGAACCATAGGGGCTCAGGAAGAACCG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000306433.9
ENST00000397802.8
3UTR-3UTR TCA 90 bp CCAGGGGATACACTAGTCGACCCATCCCCCTTTGCCAGGGCCTGGTCCAAGAGTACTGTCCAATGGAGCTaGCATGAGCTTCAGCACCAG +
Preference number: 2 (lower is better)
Translates to: PGDTLVDPSPFARAWSKSTVQWS*HELQHQ
Trigger: CTGGTGCTGAAGCTCATGTCAGCTCCATTGGACAGT...ACTCTTGGACCAGGCCCTGGCAAAGGGGGATGGGTCGACTAGTGTATCCCCTGG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000306433.9
ENST00000397802.8
3UTR-3UTR GCA 90 bp CAATCCCCACCAGTACGCAATATACACAAACACGCACATGTGGCTGGGCGCAGTAGTCCACACGCTTCCTaGCCCTGCAACCCAGCAGGC +
Preference number: 2 (lower is better)
Translates to: QSPPVRNIHKHAHVAGRSSPHAS*PCNPAG
Trigger: GCCTGCTGGGTTGCAGGGGCAGGAAGCGTGTGGACT...ACTGCGCCCAGCCACATGTGCGTGTTTGTGTATATTGCGTACTGGTGGGGATTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000306433.9
ENST00000397802.8
3UTR-3UTR CCA 90 bp GGTATGACAGAAGCCCAATCCCCACCAGTACGCAATATACACAAACACGCACATAGCAGGCAGCAGCCGTaGGCACAGGCGCCGTCCTCC +
Preference number: 2 (lower is better)
Translates to: GMTEAQSPPVRNIHKHAHSRQQP*AQAPSS
Trigger: GGAGGACGGCGCCTGTGCCCACGGCTGCTGCCTGCT...ATGTGCGTGTTTGTGTATATTGCGTACTGGTGGGGATTGGGCTTCTGTCATACC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000306433.9
ENST00000397802.8
3UTR-3UTR CCA 90 bp TGCAACCCAGCAGGCACCAAGAGAAGCCGGCCCCTTCACACAGACCCTCCCCATTCAGTGGGCCCCTTCTaGGTCTCACAGATTCAAGAA +
Preference number: 2 (lower is better)
Translates to: CNPAGTKRSRPLHTDPPHSVGPF*VSQIQE
Trigger: TTCTTGAATCTGTGAGACCCAGAAGGGGCCCACTGA...ATGGGGAGGGTCTGTGTGAAGGGGCCGGCTTCTCTTGGTGCCTGCTGGGTTGCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENST00000306433.9
ENST00000397802.8
ENST00000518039.1
3UTR-3UTR CCA 90 bp CCCAGCAGGCACCAAGAGAAGCCGGCCCCTTCACACAGACCCTCCCCATCTACCTTATTGAGTGCCTGCTaGTTCTGGCCTTGTGCAGTT +
Preference number: 2 (lower is better)
Translates to: PSRHQEKPAPSHRPSPSTLLSAC*FWPCAV
Trigger: AACTGCACAAGGCCAGAACCAGCAGGCACTCAATAA...GGTAGATGGGGAGGGTCTGTGTGAAGGGGCCGGCTTCTCTTGGTGCCTGCTGGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000306433.9
ENST00000397802.8
3UTR-3UTR CCA 90 bp CAATCCCCACCAGTACGCAATATACACAAACACGCACATGTGGCTGGGCGCAGTCCCTTTGCCAGGGCCTaGTCCAAGAGTGGGCACGTG +
Preference number: 2 (lower is better)
Translates to: QSPPVRNIHKHAHVAGRSPFARA*SKSGHV
Trigger: CACGTGCCCACTCTTGGACCAGGCCCTGGCAAAGGG...ACTGCGCCCAGCCACATGTGCGTGTTTGTGTATATTGCGTACTGGTGGGGATTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000306433.9
ENST00000397802.8
3UTR-3UTR CCA 90 bp GCCCCTGCAACCCAGCAGGCACCAAGAGAAGCCGGCCCCTTCACACAGACCCTCCATTCTCTGCCAATTTaGCTTCCTTTCACAGCAGGT +
Preference number: 2 (lower is better)
Translates to: APATQQAPREAGPFTQTLHSLPI*LPFTAG
Trigger: ACCTGCTGTGAAAGGAAGCCAAATTGGCAGAGAATG...GAGGGTCTGTGTGAAGGGGCCGGCTTCTCTTGGTGCCTGCTGGGTTGCAGGGGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000518039.1
3UTR-3UTR TCA 90 bp CCAGGGGATACACTAGTCGACCCATCCCCCTTTGCCAGGGCCTGGTCCAAGAGTGCTGGGAGGGGTCTCTaGCTTCTTCCTTTCTATTAC +
Preference number: 2 (lower is better)
Translates to: PGDTLVDPSPFARAWSKSAGRGL*LLPFYY
Trigger: GTAATAGAAAGGAAGAAGTCAGAGACCCCTCCCAGC...ACTCTTGGACCAGGCCCTGGCAAAGGGGGATGGGTCGACTAGTGTATCCCCTGG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000306433.9
ENST00000397802.8
3UTR-3UTR GCA 90 bp CCCAGCAGGCACCAAGAGAAGCCGGCCCCTTCACACAGACCCTCCCCATCTACCGAACATACAAGTTTGTaGTTCACGTGTCCCAGGACT +
Preference number: 2 (lower is better)
Translates to: PSRHQEKPAPSHRPSPSTEHTSL*FTCPRT
Trigger: AGTCCTGGGACACGTGAAGCACAAACTTGTATGTTC...GGTAGATGGGGAGGGTCTGTGTGAAGGGGCCGGCTTCTCTTGGTGCCTGCTGGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000518039.1
3UTR-3UTR GCA 90 bp AAGCCGGCCCCTTCACACAGACCCTCCCCATCTACCCTTGGAGGATGCATCAGTCCGTCCTCCTCCACCTaGTCATTTTACCGGTGTTTG +
Preference number: 2 (lower is better)
Translates to: KPAPSHRPSPSTLGGCISPSSST*SFYRCL
Trigger: CAAACACCGGTAAAATGAGCAGGTGGAGGAGGACGG...ACTGATGCATCCTCCAAGGGTAGATGGGGAGGGTCTGTGTGAAGGGGCCGGCTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000518039.1
3UTR-3UTR CCA 90 bp GAGTCAGATTCAAACCCAACCGTGACTCGACAGCCTGGACTCTGCCACTTAAACCAGCCTCACAGCTGCTaGCTGGGCAGGTTGAGGGCT +
Preference number: 2 (lower is better)
Translates to: ESDSNPTVTRQPGLCHLNQPHSC*LGRLRA
Trigger: AGCCCTCAACCTGCCCAGCCAGCAGCTGTGAGGCTG...GTTTAAGTGGCAGAGTCCAGGCTGTCGAGTCACGGTTGGGTTTGAATCTGACTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000306433.9
ENST00000397802.8
3UTR-3UTR GCA 90 bp CAATCCCCACCAGTACGCAATATACACAAACACGCACATGTGGCTGGGCGCAGTGTGCCATCTCCACGCTaGAGGAAGGTCACTGTGCCA +
Preference number: 2 (lower is better)
Translates to: QSPPVRNIHKHAHVAGRSVPSPR*RKVTVP
Trigger: TGGCACAGTGACCTTCCTGCAGCGTGGAGATGGCAC...ACTGCGCCCAGCCACATGTGCGTGTTTGTGTATATTGCGTACTGGTGGGGATTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000306433.9
ENST00000397802.8
3UTR-3UTR GCA 90 bp ACCAGGGAAAACCCCAGCCCTACTGTCAAGACAAGAGGAGAAGCTGTTCCTCCAGTGCCATCTCCACGCTaGAGGAAGGTCACTGTGCCA +
Preference number: 2 (lower is better)
Translates to: TRENPSPTVKTRGEAVPPVPSPR*RKVTVP
Trigger: TGGCACAGTGACCTTCCTGCAGCGTGGAGATGGCAC...TGGAGGAACAGCTTCTCCTCTTGTCTTGACAGTAGGGCTGGGGTTTTCCCTGGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000306433.9
ENST00000397802.8
3UTR-3UTR GCA 90 bp ACACGCTGCCGCATGAGACCTTTTTCTAACCTGCAAACGTCTCCCCAGCTGAACAGCACCAGCAGAAGCTaGAGTCCACACGCTTCCTGC +
Preference number: 2 (lower is better)
Translates to: TRCRMRPFSNLQTSPQLNSTSRS*SPHASC
Trigger: GCAGGAAGCGTGTGGACTGCAGCTTCTGCTGGTGCT...GTTCAGCTGGGGAGACGTTTGCAGGTTAGAAAAAGGTCTCATGCGGCAGCGTGT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000306433.9
ENST00000397802.8
3UTR-3UTR CCA 90 bp CAATCCCCACCAGTACGCAATATACACAAACACGCACATGTGGCTGGGCGCAGTAAAGGCTGGAGTGAGTaGGCTCAGTGGGCCCCTTCT +
Preference number: 2 (lower is better)
Translates to: QSPPVRNIHKHAHVAGRSKGWSE*AQWAPS
Trigger: AGAAGGGGCCCACTGAGCCCACTCACTCCAGCCTTT...ACTGCGCCCAGCCACATGTGCGTGTTTGTGTATATTGCGTACTGGTGGGGATTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000306433.9
ENST00000397802.8
3UTR-3UTR CCA 90 bp AGCCGGCCCCTTCACACAGACCCTCCCCATCTACCCTTGGAGGATGCATCAGTGTTATTGAGTGCCTGCTaGTTCTGGCCTTGTGCAGTT +
Preference number: 2 (lower is better)
Translates to: SRPLHTDPPHLPLEDASVLLSAC*FWPCAV
Trigger: AACTGCACAAGGCCAGAACCAGCAGGCACTCAATAA...CACTGATGCATCCTCCAAGGGTAGATGGGGAGGGTCTGTGTGAAGGGGCCGGCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000306433.9
ENST00000397802.8
3UTR-3UTR CCA 90 bp CCAGGGGATACACTAGTCGACCCATCCCCCTTTGCCAGGGCCTGGTCCAAGAGTAGAATGGAGACCTGCTaGCCGTGCATCAGCTATTTA +
Preference number: 2 (lower is better)
Translates to: PGDTLVDPSPFARAWSKSRMETC*PCISYL
Trigger: TAAATAGCTGATGCACGGCCAGCAGGTCTCCATTCT...ACTCTTGGACCAGGCCCTGGCAAAGGGGGATGGGTCGACTAGTGTATCCCCTGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000306433.9
ENST00000397802.8
3UTR-3UTR CCA 90 bp GAACCTGGGAGACAGAGTTGCAGTAAGCCAAGATCACACCACTGGGCGACAGAGCTCCCCATCTACCCTTaGAGGATGCATCAGTGGAAG +
Preference number: 2 (lower is better)
Translates to: EPGRQSCSKPRSHHWATELPIYP*RMHQWK
Trigger: CTTCCACTGATGCATCCTCCAAGGGTAGATGGGGAG...CTCTGTCGCCCAGTGGTGTGATCTTGGCTTACTGCAACTCTGTCTCCCAGGTTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000306433.9
ENST00000397802.8
3UTR-3UTR CCA 90 bp GAGTCAGATTCAAACCCAACCGTGACTCGACAGCCTGGACTCTGCCACTTAAACGCAGGGAACATGTCCTaGGCCCAACATGTCCCCCAA +
Preference number: 2 (lower is better)
Translates to: ESDSNPTVTRQPGLCHLNAGNMS*AQHVPQ
Trigger: TTGGGGGACATGTTGGGCCCAGGACATGTTCCCTGC...GTTTAAGTGGCAGAGTCCAGGCTGTCGAGTCACGGTTGGGTTTGAATCTGACTC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000306433.9
ENST00000397802.8
3UTR-3UTR GCA 90 bp ACCAGGGAAAACCCCAGCCCTACTGTCAAGACAAGAGGAGAAGCTGTTCCTCCAAAGGCTTTTGTAGGGTaGTGGGAGGGGTCTCTGACT +
Preference number: 2 (lower is better)
Translates to: TRENPSPTVKTRGEAVPPKAFVG*WEGSLT
Trigger: AGTCAGAGACCCCTCCCAGCACCCTACAAAAGCCTT...TGGAGGAACAGCTTCTCCTCTTGTCTTGACAGTAGGGCTGGGGTTTTCCCTGGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENST00000306433.9
ENST00000397802.8
3UTR-3UTR GCA 90 bp AGCCGGCCCCTTCACACAGACCCTCCCCATCTACCCTTGGAGGATGCATCAGTGGGTACAAGCATTCTCTaGCAATTTGGCTTCCTTTCA +
Preference number: 2 (lower is better)
Translates to: SRPLHTDPPHLPLEDASVGTSIL*QFGFLS
Trigger: TGAAAGGAAGCCAAATTGGCAGAGAATGCTTGTACC...CACTGATGCATCCTCCAAGGGTAGATGGGGAGGGTCTGTGTGAAGGGGCCGGCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000518039.1
3UTR-3UTR CCA 90 bp GAACCTGGGAGACAGAGTTGCAGTAAGCCAAGATCACACCACTGGGCGACAGAGTCAGTGGGCCCCTTCTaGGTCTCACAGATTCAAGAA +
Preference number: 2 (lower is better)
Translates to: EPGRQSCSKPRSHHWATESVGPF*VSQIQE
Trigger: TTCTTGAATCTGTGAGACCCAGAAGGGGCCCACTGA...CTCTGTCGCCCAGTGGTGTGATCTTGGCTTACTGCAACTCTGTCTCCCAGGTTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000306433.9
ENST00000397802.8
3UTR CAA 90 bp GAAGGCTCCTGTACTACTGTCCACTCTGGCTGTGGACACCATCATTaGCAGAATGATGCTTGGCGCAGGAGCAGCCATTCTGCAATACTG +
Preference number: 2 (lower is better)
Translates to: EGSCTTVHSGCGHHH*QNDAWRRSSHSAIL
Trigger: CAGTATTGCAGAATGGCTGCTCCTGCGCCAAGCATCATTCTGCAAATGATGGTGTCCACAGCCAGAGTGGACAGTAGTACAGGAGCCTTC
52% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000306433.9
ENST00000397802.8
3UTR-3UTR TCA 90 bp ACCAGGGAAAACCCCAGCCCTACTGTCAAGACAAGAGGAGAAGCTGTTCCTCCAGCTGGGAGGGGTCTCTaGCTTCTTCCTTTCTATTAC +
Preference number: 2 (lower is better)
Translates to: TRENPSPTVKTRGEAVPPAGRGL*LLPFYY
Trigger: GTAATAGAAAGGAAGAAGTCAGAGACCCCTCCCAGC...TGGAGGAACAGCTTCTCCTCTTGTCTTGACAGTAGGGCTGGGGTTTTCCCTGGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000306433.9
ENST00000397802.8
3UTR-3UTR TCA 90 bp GAGTCAGATTCAAACCCAACCGTGACTCGACAGCCTGGACTCTGCCACTTAAACGGAAGCGGTTCTTCCTaGGCCCCTATGGTTCATACT +
Preference number: 2 (lower is better)
Translates to: ESDSNPTVTRQPGLCHLNGSGSS*APMVHT
Trigger: AGTATGAACCATAGGGGCTCAGGAAGAACCGCTTCC...GTTTAAGTGGCAGAGTCCAGGCTGTCGAGTCACGGTTGGGTTTGAATCTGACTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000306433.9
ENST00000397802.8
3UTR-3UTR CCA 90 bp GGTATGACAGAAGCCCAATCCCCACCAGTACGCAATATACACAAACACGCACATCACACAGGAGGCACCTaGCTAACAGGAGCCAGGAGA +
Preference number: 2 (lower is better)
Translates to: GMTEAQSPPVRNIHKHAHHTGGT*LTGARR
Trigger: TCTCCTGGCTCCTGTTAGCCAGGTGCCTCCTGTGTG...ATGTGCGTGTTTGTGTATATTGCGTACTGGTGGGGATTGGGCTTCTGTCATACC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000306433.9
ENST00000397802.8
3UTR-3UTR GCA 90 bp ACCCTCCCCATCTACCCTTGGAGGATGCATCAGTGGAAGAGATTAAGACATAAAGTGCCATCTCCACGCTaGAGGAAGGTCACTGTGCCA +
Preference number: 2 (lower is better)
Translates to: TLPIYPWRMHQWKRLRHKVPSPR*RKVTVP
Trigger: TGGCACAGTGACCTTCCTGCAGCGTGGAGATGGCAC...TTTATGTCTTAATCTCTTCCACTGATGCATCCTCCAAGGGTAGATGGGGAGGGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000306433.9
ENST00000397802.8
ENST00000518039.1
3UTR-3UTR GCA 90 bp GAGTCAGATTCAAACCCAACCGTGACTCGACAGCCTGGACTCTGCCACTTAAACAGCAAAGGGAAGTTGTaGCATCAGCGTCTAACAGCC +
Preference number: 2 (lower is better)
Translates to: ESDSNPTVTRQPGLCHLNSKGKL*HQRLTA
Trigger: GGCTGTTAGACGCTGATGGCACAACTTCCCTTTGCT...GTTTAAGTGGCAGAGTCCAGGCTGTCGAGTCACGGTTGGGTTTGAATCTGACTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000306433.9
ENST00000397802.8
3UTR-3UTR CCA 90 bp GAACCTGGGAGACAGAGTTGCAGTAAGCCAAGATCACACCACTGGGCGACAGAGCCAAAGTTTTTGAAGTaGGCATCATCGGCCAAGTGT +
Preference number: 2 (lower is better)
Translates to: EPGRQSCSKPRSHHWATEPKFLK*ASSAKC
Trigger: ACACTTGGCCGATGATGCCCACTTCAAAAACTTTGG...CTCTGTCGCCCAGTGGTGTGATCTTGGCTTACTGCAACTCTGTCTCCCAGGTTC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000306433.9
ENST00000397802.8
3UTR-3UTR GCA 90 bp GGTATGACAGAAGCCCAATCCCCACCAGTACGCAATATACACAAACACGCACATCTGCAAAGGAAAGAGTaGAGGGAACATGTCCTGGGC +
Preference number: 2 (lower is better)
Translates to: GMTEAQSPPVRNIHKHAHLQRKE*REHVLG
Trigger: GCCCAGGACATGTTCCCTGCACTCTTTCCTTTGCAG...ATGTGCGTGTTTGTGTATATTGCGTACTGGTGGGGATTGGGCTTCTGTCATACC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000306433.9
ENST00000397802.8
3UTR-3UTR CCA 90 bp ACCCTCCCCATCTACCCTTGGAGGATGCATCAGTGGAAGAGATTAAGACATAAAAAGCCCTGGGGGACCTaGAACAATGGTTGCCAAAGG +
Preference number: 2 (lower is better)
Translates to: TLPIYPWRMHQWKRLRHKKPWGT*NNGCQR
Trigger: CCTTTGGCAACCATTGTTCCAGGTCCCCCAGGGCTT...TTTATGTCTTAATCTCTTCCACTGATGCATCCTCCAAGGGTAGATGGGGAGGGT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENST00000306433.9
ENST00000397802.8
ENST00000518039.1
3UTR-3UTR CCA 90 bp CAATCCCCACCAGTACGCAATATACACAAACACGCACATGTGGCTGGGCGCAGTTACTACTGTCCACTCTaGCTGTGGACACCATCATTT +
Preference number: 2 (lower is better)
Translates to: QSPPVRNIHKHAHVAGRSYYCPL*LWTPSF
Trigger: AAATGATGGTGTCCACAGCCAGAGTGGACAGTAGTA...ACTGCGCCCAGCCACATGTGCGTGTTTGTGTATATTGCGTACTGGTGGGGATTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000306433.9
ENST00000397802.8
3UTR-3UTR TCA 90 bp CACCTCAGCTCCAGAGTAGCTGGGAACGAAGAATTGTATGTATTTCTGAGTGAGCCAATGGAGCTGACATaGGCTTCAGCACCAGAAAGG +
Preference number: 2 (lower is better)
Translates to: HLSSRVAGNEELYVFLSEPMELT*ASAPER
Trigger: CCTTTCTGGTGCTGAAGCTCATGTCAGCTCCATTGG...CTCACTCAGAAATACATACAATTCTTCGTTCCCAGCTACTCTGGAGCTGAGGTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000306433.9
ENST00000397802.8
3UTR-3UTR GCA 90 bp CACCTCAGCTCCAGAGTAGCTGGGAACGAAGAATTGTATGTATTTCTGAGTGAGAAGGCTTTTGTAGGGTaGTGGGAGGGGTCTCTGACT +
Preference number: 2 (lower is better)
Translates to: HLSSRVAGNEELYVFLSEKAFVG*WEGSLT
Trigger: AGTCAGAGACCCCTCCCAGCACCCTACAAAAGCCTT...CTCACTCAGAAATACATACAATTCTTCGTTCCCAGCTACTCTGGAGCTGAGGTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000306433.9
ENST00000397802.8
3UTR-3UTR GCA 90 bp GCAACAAATTTGCATCCACTTGCACTCATGTATAAATTTGGCTTTGGGCTCTTCAGTCAGCCTCACAGCTaGTGGCTGGGCAGGTTGAGG +
Preference number: 2 (lower is better)
Translates to: ATNLHPLALMYKFGFGLFSQPHS*WLGRLR
Trigger: CCTCAACCTGCCCAGCCAGCAGCTGTGAGGCTGACT...GAAGAGCCCAAAGCCAAATTTATACATGAGTGCAAGTGGATGCAAATTTGTTGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000306433.9
ENST00000397802.8
3UTR-3UTR CCA 90 bp TTAGACCAAACAGGGCTTCCCAGCACAGGTTTCCAAGGAACCCTTTCTGCTCCACCAAAGTTTTTGAAGTaGGCATCATCGGCCAAGTGT +
Preference number: 2 (lower is better)
Translates to: LDQTGLPSTGFQGTLSAPPKFLK*ASSAKC
Trigger: ACACTTGGCCGATGATGCCCACTTCAAAAACTTTGG...TGGAGCAGAAAGGGTTCCTTGGAAACCTGTGCTGGGAAGCCCTGTTTGGTCTAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000306433.9
ENST00000397802.8
3UTR-3UTR GCA 90 bp CGGCCAAGTGTCAAAGAGGCCATTATTCAATACATCCCTAACTTCTCTTATGAAAGCACCAGCAGAAGCTaGAGTCCACACGCTTCCTGC +
Preference number: 2 (lower is better)
Translates to: RPSVKEAIIQYIPNFSYESTSRS*SPHASC
Trigger: GCAGGAAGCGTGTGGACTGCAGCTTCTGCTGGTGCT...TTCATAAGAGAAGTTAGGGATGTATTGAATAATGGCCTCTTTGACACTTGGCCG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000306433.9
ENST00000397802.8
3UTR-3UTR GCA 90 bp CACCTCAGCTCCAGAGTAGCTGGGAACGAAGAATTGTATGTATTTCTGAGTGAGATGAGAATGGAGACCTaGTGGCCGTGCATCAGCTAT +
Preference number: 2 (lower is better)
Translates to: HLSSRVAGNEELYVFLSEMRMET*WPCISY
Trigger: ATAGCTGATGCACGGCCAGCAGGTCTCCATTCTCAT...CTCACTCAGAAATACATACAATTCTTCGTTCCCAGCTACTCTGGAGCTGAGGTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000306433.9
ENST00000397802.8
3UTR-3UTR TCA 90 bp CACCTCAGCTCCAGAGTAGCTGGGAACGAAGAATTGTATGTATTTCTGAGTGAGTGGCAGCAGCTACTATaGATTGTCTATCCAACTGCC +
Preference number: 2 (lower is better)
Translates to: HLSSRVAGNEELYVFLSEWQQLL*IVYPTA
Trigger: GGCAGTTGGATAGACAATTCATAGTAGCTGCTGCCA...CTCACTCAGAAATACATACAATTCTTCGTTCCCAGCTACTCTGGAGCTGAGGTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000306433.9
ENST00000397802.8
3UTR-3UTR GCA 90 bp GAGTCAGATTCAAACCCAACCGTGACTCGACAGCCTGGACTCTGCCACTTAAACAAGCATATACACAGATaGAGGGAGCAACAAATTTGC +
Preference number: 2 (lower is better)
Translates to: ESDSNPTVTRQPGLCHLNKHIHR*REQQIC
Trigger: GCAAATTTGTTGCTCCCTGCATCTGTGTATATGCTT...GTTTAAGTGGCAGAGTCCAGGCTGTCGAGTCACGGTTGGGTTTGAATCTGACTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000306433.9
ENST00000397802.8
3UTR-3UTR CCA 90 bp GGTATGACAGAAGCCCAATCCCCACCAGTACGCAATATACACAAACACGCACATAAAGGAAGAAAGGGCTaGAGCCCAGAGTTAACCAAA +
Preference number: 2 (lower is better)
Translates to: GMTEAQSPPVRNIHKHAHKGRKG*SPELTK
Trigger: TTTGGTTAACTCTGGGCTCCAGCCCTTTCTTCCTTT...ATGTGCGTGTTTGTGTATATTGCGTACTGGTGGGGATTGGGCTTCTGTCATACC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000306433.9
ENST00000397802.8
3UTR-3UTR TCA 90 bp GGTATGACAGAAGCCCAATCCCCACCAGTACGCAATATACACAAACACGCACATACTTCGGCTCATACATaGGTACTAACTGCAAAGGAA +
Preference number: 2 (lower is better)
Translates to: GMTEAQSPPVRNIHKHAHTSAHT*VLTAKE
Trigger: TTCCTTTGCAGTTAGTACTCATGTATGAGCCGAAGT...ATGTGCGTGTTTGTGTATATTGCGTACTGGTGGGGATTGGGCTTCTGTCATACC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000306433.9
ENST00000397802.8
3UTR-3UTR GCA 90 bp GAGTCAGATTCAAACCCAACCGTGACTCGACAGCCTGGACTCTGCCACTTAAACGTAGTTAGAAAAGTGTaGAAGCCTATTGTTCCTTCT +
Preference number: 2 (lower is better)
Translates to: ESDSNPTVTRQPGLCHLNVVRKV*KPIVPS
Trigger: AGAAGGAACAATAGGCTTGCACACTTTTCTAACTAC...GTTTAAGTGGCAGAGTCCAGGCTGTCGAGTCACGGTTGGGTTTGAATCTGACTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000306433.9
ENST00000397802.8
3UTR CAA 90 bp GGTGGACTCTCCTCTCTTTTCCCACACTTATTAATAAGACCTAATTaGTGCATCAGGGATCTGAGACAGGTTGTGAGGACTTTGATACGG +
Preference number: 2 (lower is better)
Translates to: GGLSSLFPHLLIRPN*CIRDLRQVVRTLIR
Trigger: CCGTATCAAAGTCCTCACAACCTGTCTCAGATCCCTGATGCACAAATTAGGTCTTATTAATAAGTGTGGGAAAAGAGAGGAGAGTCCACC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000306433.9
ENST00000397802.8
3UTR-3UTR TCA 90 bp GGTATGACAGAAGCCCAATCCCCACCAGTACGCAATATACACAAACACGCACATTTTGTTAGCAATATATaGCTTCGGCTCATACATGAG +
Preference number: 2 (lower is better)
Translates to: GMTEAQSPPVRNIHKHAHFVSNI*LRLIHE
Trigger: CTCATGTATGAGCCGAAGTCATATATTGCTAACAAA...ATGTGCGTGTTTGTGTATATTGCGTACTGGTGGGGATTGGGCTTCTGTCATACC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000306433.9
ENST00000397802.8
3UTR-3UTR TCA 90 bp GCAACAAATTTGCATCCACTTGCACTCATGTATAAATTTGGCTTTGGGCTCTTCGAAACCCAAAGTTTTTaGAGTGGGCATCATCGGCCA +
Preference number: 2 (lower is better)
Translates to: ATNLHPLALMYKFGFGLFETQSF*SGHHRP
Trigger: TGGCCGATGATGCCCACTTCAAAAACTTTGGGTTTC...GAAGAGCCCAAAGCCAAATTTATACATGAGTGCAAGTGGATGCAAATTTGTTGC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000306433.9
ENST00000397802.8
3UTR-3UTR GCA 90 bp CACCTCAGCTCCAGAGTAGCTGGGAACGAAGAATTGTATGTATTTCTGAGTGAGTACAATGAAATCATGTaGTTTGCAGCCACATGGATG +
Preference number: 2 (lower is better)
Translates to: HLSSRVAGNEELYVFLSEYNEIM*FAATWM
Trigger: CATCCATGTGGCTGCAAAGCACATGATTTCATTGTA...CTCACTCAGAAATACATACAATTCTTCGTTCCCAGCTACTCTGGAGCTGAGGTG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000306433.9
ENST00000397802.8
3UTR CAA 90 bp AGAAAGCATATACACAGATGCAGGGAGCAACAAATTTGCATCCACTaGCACTCATGTATAAATTTGGCTTTGGGCTCTTCTCCTCTGTCA +
Preference number: 2 (lower is better)
Translates to: RKHIHRCREQQICIH*HSCINLALGSSPLS
Trigger: TGACAGAGGAGAAGAGCCCAAAGCCAAATTTATACATGAGTGCAAGTGGATGCAAATTTGTTGCTCCCTGCATCTGTGTATATGCTTTCT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000306433.9
ENST00000397802.8
3UTR GCA 72 bp AGTGCCAGGGGATACACTAGTCGACCCATCCCCCTTTaGCAGGGCCTGGTCCAAGAGTGGGCACGTGGCCCC +
Preference number: 3 (lower is better)
Translates to: SARGYTSRPIPL*QGLVQEWARGP
Trigger: GGGGCCACGTGCCCACTCTTGGACCAGGCCCTGGCAAAGGGGGATGGGTCGACTAGTGTATCCCCTGGCACT
65% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000306433.9
ENST00000397802.8
3UTR-3UTR CAA 90 bp TCTGGAGCAGGCAGCAGCCGTGGGCACAGGCGCCGTCCTCCTCCACCTGCTCATTGCACCCTTCCAGACTaGCGGATGAGTAGCTTGCCA +
Preference number: 3 (lower is better)
Translates to: SGAGSSRGHRRRPPPPAHCTLPD*RMSSLP
Trigger: TGGCAAGCTACTCATCCGCAAGTCTGGAAGGGTGCA...ATGAGCAGGTGGAGGAGGACGGCGCCTGTGCCCACGGCTGCTGCCTGCTCCAGA
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000518039.1
3UTR-3UTR CAA 90 bp CCTGCAACCCAGCAGGCACCAAGAGAAGCCGGCCCCTTCACACAGACCCTCCCCCCTCCCCATCTACCCTaGGAGGATGCATCAGTGGAA +
Preference number: 3 (lower is better)
Translates to: PATQQAPREAGPFTQTLPPPHLP*EDASVE
Trigger: TTCCACTGATGCATCCTCCAAGGGTAGATGGGGAGG...GGGGAGGGTCTGTGTGAAGGGGCCGGCTTCTCTTGGTGCCTGCTGGGTTGCAGG
62% GC, longest homopolymer 6 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENST00000306433.9
ENST00000397802.8
ENST00000518039.1
3UTR-3UTR CAA 90 bp TGCAGTCCACACGCTTCCTGCCCCTGCAACCCAGCAGGCACCAAGAGAAGCCGGCTTGCCCAAGAGGAGTaGCACCCTTCCAGACTTGCG +
Preference number: 3 (lower is better)
Translates to: CSPHASCPCNPAGTKRSRLAQEE*HPSRLA
Trigger: CGCAAGTCTGGAAGGGTGCAACTCCTCTTGGGCAAG...CCGGCTTCTCTTGGTGCCTGCTGGGTTGCAGGGGCAGGAAGCGTGTGGACTGCA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000518039.1
3UTR GCA 72 bp GAGGCCAGGTGCCACGACGCCAGCAAAGGGAAGTTGTaGCATCAGCGTCTAACAGCCACACACGCTGCCGCA +
Preference number: 3 (lower is better)
Translates to: EARCHDASKGKL*HQRLTATHAAA
Trigger: TGCGGCAGCGTGTGTGGCTGTTAGACGCTGATGGCACAACTTCCCTTTGCTGGCGTCGTGGCACCTGGCCTC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000306433.9
ENST00000397802.8
3UTR-3UTR CAA 90 bp AGGCAGCAGCCGTGGGCACAGGCGCCGTCCTCCTCCACCTGCTCATTTTACCGGGGGGAACATACAAGTTaGTGCTTCACGTGTCCCAGG +
Preference number: 3 (lower is better)
Translates to: RQQPWAQAPSSSTCSFYRGEHTS*CFTCPR
Trigger: CCTGGGACACGTGAAGCACAAACTTGTATGTTCCCC...CCGGTAAAATGAGCAGGTGGAGGAGGACGGCGCCTGTGCCCACGGCTGCTGCCT
61% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENST00000518039.1
3UTR-3UTR CAA 90 bp GCCGGCCCCTTCACACAGACCCTCCCCATCTACCCTTGGAGGATGCATCAGTGGCCTCCCCATCTACCCTaGGAGGATGCATCAGTGGAA +
Preference number: 3 (lower is better)
Translates to: AGPFTQTLPIYPWRMHQWPPHLP*EDASVE
Trigger: TTCCACTGATGCATCCTCCAAGGGTAGATGGGGAGG...CCACTGATGCATCCTCCAAGGGTAGATGGGGAGGGTCTGTGTGAAGGGGCCGGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENST00000306433.9
ENST00000397802.8
ENST00000518039.1
3UTR-3UTR CAA 90 bp GCAGTCCACACGCTTCCTGCCCCTGCAACCCAGCAGGCACCAAGAGAAGCCGGCGCATTCTCTGCCAATTaGGCTTCCTTTCACAGCAGG +
Preference number: 3 (lower is better)
Translates to: AVHTLPAPATQQAPREAGAFSAN*ASFHSR
Trigger: CCTGCTGTGAAAGGAAGCCAAATTGGCAGAGAATGC...GCCGGCTTCTCTTGGTGCCTGCTGGGTTGCAGGGGCAGGAAGCGTGTGGACTGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000518039.1
3UTR-3UTR CAA 90 bp AGCCGGCCCCTTCACACAGACCCTCCCCATCTACCCTTGGAGGATGCATCAGTGGGACATGAACGTTTATaGAGTGCCTGCTGGTTCTGG +
Preference number: 3 (lower is better)
Translates to: SRPLHTDPPHLPLEDASVGHERL*SACWFW
Trigger: CCAGAACCAGCAGGCACTCAATAAACGTTCATGTCC...CACTGATGCATCCTCCAAGGGTAGATGGGGAGGGTCTGTGTGAAGGGGCCGGCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000306433.9
ENST00000397802.8
3UTR GCA 72 bp GCTGGGACCGAGTGCTTAAGTCTCAGACTCAATCCTTaGTCTCTCTCCTATACTGCCTCCAGGAGGACGGGG +
Preference number: 3 (lower is better)
Translates to: AGTECLSLRLNP*SLSYTASRRTG
Trigger: CCCCGTCCTCCTGGAGGCAGTATAGGAGAGAGAGCAAGGATTGAGTCTGAGACTTAAGCACTCGGTCCCAGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000306433.9
ENST00000397802.8
3UTR TCA 72 bp TGCCATCAGCGTCTAACAGCCACACACGCTGCCGCATaGGACCTTTTTCTAACCTGCAAACGTCTCCCCAGC +
Preference number: 3 (lower is better)
Translates to: CHQRLTATHAAA*DLFLTCKRLPS
Trigger: GCTGGGGAGACGTTTGCAGGTTAGAAAAAGGTCTCATGCGGCAGCGTGTGTGGCTGTTAGACGCTGATGGCA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000306433.9
ENST00000397802.8
3UTR TCA 72 bp TATTCAGTCAGCCTCACAGCTGCTGGCTGGGCAGGTTaGGGGCTTTGTAGGAGAAGCCCAGCCTTGACAAAT +
Preference number: 3 (lower is better)
Translates to: YSVSLTAAGWAG*GLCRRSPALTN
Trigger: ATTTGTCAAGGCTGGGCTTCTCCTACAAAGCCCTCAACCTGCCCAGCCAGCAGCTGTGAGGCTGACTGAATA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000306433.9
ENST00000397802.8
3UTR TCA 72 bp GGAGCTGCTGACGGTTATTCCCGGATAAGGGCAGAATaGGAAGGCTCCTGTACTACTGTCCACTCTGGCTGT +
Preference number: 3 (lower is better)
Translates to: GAADGYSRIRAE*EGSCTTVHSGC
Trigger: ACAGCCAGAGTGGACAGTAGTACAGGAGCCTTCTCATTCTGCCCTTATCCGGGAATAACCGTCAGCAGCTCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000306433.9
ENST00000397802.8
3UTR-3UTR CAA 90 bp GGCTTTTGTAGGGTGCTGGGAGGGGTCTCTGACTTCTTCCTTTCTATTACCTGCCCTCCCCATCTACCCTaGGAGGATGCATCAGTGGAA +
Preference number: 3 (lower is better)
Translates to: GFCRVLGGVSDFFLSITCPPHLP*EDASVE
Trigger: TTCCACTGATGCATCCTCCAAGGGTAGATGGGGAGG...GCAGGTAATAGAAAGGAAGAAGTCAGAGACCCCTCCCAGCACCCTACAAAAGCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000306433.9
ENST00000397802.8
3UTR GCA 72 bp GTACTACTGTCCACTCTGGCTGTGGACACCATCATTTaGAGAATGATGCTTGGCGCAGGAGCAGCCATTCTG +
Preference number: 3 (lower is better)
Translates to: VLLSTLAVDTII*RMMLGAGAAIL
Trigger: CAGAATGGCTGCTCCTGCGCCAAGCATCATTCTGCAAATGATGGTGTCCACAGCCAGAGTGGACAGTAGTAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000306433.9
ENST00000397802.8
3UTR CCA 72 bp GCCGGCCCCTTCACACAGACCCTCCCCATCTACCCTTaGAGGATGCATCAGTGGAAGAGATTAAGACATAAA +
Preference number: 3 (lower is better)
Translates to: AGPFTQTLPIYP*RMHQWKRLRHK
Trigger: TTTATGTCTTAATCTCTTCCACTGATGCATCCTCCAAGGGTAGATGGGGAGGGTCTGTGTGAAGGGGCCGGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000306433.9
ENST00000397802.8
ENST00000518039.1
3UTR-3UTR CAA 90 bp GAACCTGGGAGACAGAGTTGCAGTAAGCCAAGATCACACCACTGGGCGACAGAGTCTCAGACTCAATCCTaGCTCTCTCTCCTATACTGC +
Preference number: 3 (lower is better)
Translates to: EPGRQSCSKPRSHHWATESQTQS*LSLLYC
Trigger: GCAGTATAGGAGAGAGAGCAAGGATTGAGTCTGAGA...CTCTGTCGCCCAGTGGTGTGATCTTGGCTTACTGCAACTCTGTCTCCCAGGTTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000306433.9
ENST00000397802.8
3UTR-3UTR CAA 90 bp GAGTCAGATTCAAACCCAACCGTGACTCGACAGCCTGGACTCTGCCACTTAAACGGACATGAACGTTTATaGAGTGCCTGCTGGTTCTGG +
Preference number: 3 (lower is better)
Translates to: ESDSNPTVTRQPGLCHLNGHERL*SACWFW
Trigger: CCAGAACCAGCAGGCACTCAATAAACGTTCATGTCC...GTTTAAGTGGCAGAGTCCAGGCTGTCGAGTCACGGTTGGGTTTGAATCTGACTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000306433.9
ENST00000397802.8
3UTR TCA 72 bp CCATATTCCTTGGTAGAAATGCATGCCTCAGGGGCCTaGCCAAGAAGGTGGACTCTCCTCTCTTTTCCCACA +
Preference number: 3 (lower is better)
Translates to: PYSLVEMHASGA*PRRWTLLSFPT
Trigger: TGTGGGAAAAGAGAGGAGAGTCCACCTTCTTGGTCAGGCCCCTGAGGCATGCATTTCTACCAAGGAATATGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000306433.9
ENST00000397802.8
3UTR TCA 72 bp TGTCCACTCTGGCTGTGGACACCATCATTTGCAGAATaGTGCTTGGCGCAGGAGCAGCCATTCTGCAATACT +
Preference number: 3 (lower is better)
Translates to: CPLWLWTPSFAE*CLAQEQPFCNT
Trigger: AGTATTGCAGAATGGCTGCTCCTGCGCCAAGCATCATTCTGCAAATGATGGTGTCCACAGCCAGAGTGGACA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000306433.9
ENST00000397802.8
3UTR GCA 72 bp GAAGTTGTGCCATCAGCGTCTAACAGCCACACACGCTaGCGCATGAGACCTTTTTCTAACCTGCAAACGTCT +
Preference number: 3 (lower is better)
Translates to: EVVPSASNSHTR*RMRPFSNLQTS
Trigger: AGACGTTTGCAGGTTAGAAAAAGGTCTCATGCGGCAGCGTGTGTGGCTGTTAGACGCTGATGGCACAACTTC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000306433.9
ENST00000397802.8
3UTR CCA 72 bp GTTTGTCCAAGGACACAGAACCAGGAACTGGCAAGCTaGGACCGAGTGCTTAAGTCTCAGACTCAATCCTTG +
Preference number: 3 (lower is better)
Translates to: VCPRTQNQELAS*DRVLKSQTQSL
Trigger: CAAGGATTGAGTCTGAGACTTAAGCACTCGGTCCCAGCTTGCCAGTTCCTGGTTCTGTGTCCTTGGACAAAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000306433.9
ENST00000397802.8
3UTR CCA 72 bp TCTGGCTGTGGACACCATCATTTGCAGAATGATGCTTaGCGCAGGAGCAGCCATTCTGCAATACTGAGGATG +
Preference number: 3 (lower is better)
Translates to: SGCGHHHLQNDA*RRSSHSAILRM
Trigger: CATCCTCAGTATTGCAGAATGGCTGCTCCTGCGCCAAGCATCATTCTGCAAATGATGGTGTCCACAGCCAGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000306433.9
ENST00000397802.8
3UTR-3UTR CAA 90 bp GGAGGCTCAGAAAGGTTAGGTAGTTTGTCCAAGGACACAGAACCAGGAACTGGCTCTCAGACTCAATCCTaGCTCTCTCTCCTATACTGC +
Preference number: 3 (lower is better)
Translates to: GGSERLGSLSKDTEPGTGSQTQS*LSLLYC
Trigger: GCAGTATAGGAGAGAGAGCAAGGATTGAGTCTGAGA...GCCAGTTCCTGGTTCTGTGTCCTTGGACAAACTACCTAACCTTTCTGAGCCTCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000306433.9
ENST00000397802.8
3UTR CCA 72 bp CCTGCAGCTATTACAGTAACTCACACAGGAGGCACCTaGCTAACAGGAGCCAGGAGAAAAAGGCATAGAACA +
Preference number: 3 (lower is better)
Translates to: PAAITVTHTGGT*LTGARRKRHRT
Trigger: TGTTCTATGCCTTTTTCTCCTGGCTCCTGTTAGCCAGGTGCCTCCTGTGTGAGTTACTGTAATAGCTGCAGG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000306433.9
ENST00000397802.8
3UTR TCA 72 bp AGGAGAAGCTGTTCCTCCAGGGACAACACAGTACAATaGCCTGGTAAAGGGAACAGGATCACAGACCCAAAA +
Preference number: 3 (lower is better)
Translates to: RRSCSSRDNTVQ*PGKGNRITDPK
Trigger: TTTTGGGTCTGTGATCCTGTTCCCTTTACCAGGTCATTGTACTGTGTTGTCCCTGGAGGAACAGCTTCTCCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000306433.9
ENST00000397802.8
3UTR TCA 72 bp TTTCCAAGGAACCCTTTCTGCTCCAGTCCTCTACAGTaGGAAGAGCCCAGAATAACACTGTCCAATGGAGCT +
Preference number: 3 (lower is better)
Translates to: FPRNPFCSSPLQ*EEPRITLSNGA
Trigger: AGCTCCATTGGACAGTGTTATTCTGGGCTCTTCTCACTGTAGAGGACTGGAGCAGAAAGGGTTCCTTGGAAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000306433.9
ENST00000397802.8
3UTR TCA 72 bp TTCTGGCCTTGTGCAGTTTTCATCTATAATAGCCCATaGATCCTCACGCCAACCCTGGAGGTAGGTATCATC +
Preference number: 3 (lower is better)
Translates to: FWPCAVFIYNSP*ILTPTLEVGII
Trigger: GATGATACCTACCTCCAGGGTTGGCGTGAGGATTCATGGGCTATTATAGATGAAAACTGCACAAGGCCAGAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000306433.9
ENST00000397802.8
3UTR GCA 72 bp GCAATATATGACTTCGGCTCATACATGAGTACTAACTaGAAAGGAAAGAGTGCAGGGAACATGTCCTGGGCC +
Preference number: 3 (lower is better)
Translates to: AIYDFGSYMSTN*KGKSAGNMSWA
Trigger: GGCCCAGGACATGTTCCCTGCACTCTTTCCTTTGCAGTTAGTACTCATGTATGAGCCGAAGTCATATATTGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000306433.9
ENST00000397802.8
3UTR GCA 72 bp AACATGGCAGCAGCTACTATGAATTGTCTATCCAACTaGCACTCCAGCTTCCTCCCTACTAACAAAACCCCA +
Preference number: 3 (lower is better)
Translates to: NMAAATMNCLSN*HSSFLPTNKTP
Trigger: TGGGGTTTTGTTAGTAGGGAGGAAGCTGGAGTGGCAGTTGGATAGACAATTCATAGTAGCTGCTGCCATGTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000306433.9
ENST00000397802.8
3UTR CCA 72 bp GGAGTCAGATTCAAACCCAACCGTGACTCGACAGCCTaGACTCTGCCACTTAAACATGTAGTTAGAAAAGTG +
Preference number: 3 (lower is better)
Translates to: GVRFKPNRDSTA*TLPLKHVVRKV
Trigger: CACTTTTCTAACTACATGTTTAAGTGGCAGAGTCCAGGCTGTCGAGTCACGGTTGGGTTTGAATCTGACTCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000306433.9
ENST00000397802.8
3UTR CCA 72 bp GGGTTGAAATGCTACCTGAGTACAATGTTCACTATTTaGGTGATAGGTATGACAGAAGCCCAATCCCCACCA +
Preference number: 3 (lower is better)
Translates to: GLKCYLSTMFTI*VIGMTEAQSPP
Trigger: TGGTGGGGATTGGGCTTCTGTCATACCTATCACCCAAATAGTGAACATTGTACTCAGGTAGCATTTCAACCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000306433.9
ENST00000397802.8
3UTR GCA 72 bp TCTCTTTTCCCACACTTATTAATAAGACCTAATTTGTaGATCAGGGATCTGAGACAGGTTGTGAGGACTTTG +
Preference number: 3 (lower is better)
Translates to: SLFPHLLIRPNL*IRDLRQVVRTL
Trigger: CAAAGTCCTCACAACCTGTCTCAGATCCCTGATGCACAAATTAGGTCTTATTAATAAGTGTGGGAAAAGAGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000306433.9
ENST00000397802.8
3UTR TCA 72 bp ACTCTAGAACCATCTATTTACAGACTTTTTGCTATGTaGGATAAACATTCCCATTGCTTAAGCCACCGTCAG +
Preference number: 3 (lower is better)
Translates to: TLEPSIYRLFAM*DKHSHCLSHRQ
Trigger: CTGACGGTGGCTTAAGCAATGGGAATGTTTATCTCACATAGCAAAAAGTCTGTAAATAGATGGTTCTAGAGT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000306433.9
ENST00000397802.8
3UTR GCA 72 bp CTTCTTTCTGTATTTAACAGAAAGCATATACACAGATaGAGGGAGCAACAAATTTGCATCCACTTGCACTCA +
Preference number: 3 (lower is better)
Translates to: LLSVFNRKHIHR*REQQICIHLHS
Trigger: TGAGTGCAAGTGGATGCAAATTTGTTGCTCCCTGCATCTGTGTATATGCTTTCTGTTAAATACAGAAAGAAG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000306433.9
ENST00000397802.8
CDS-3UTR TCA 90 bp CCTGCAACCCAGCAGGCACCAAGAGAAGCCGGCCCCTTCACACAGACCCTCCCCCCGGGACCACCCAGGTaGGAGCCTTTGGCTCGCGAC +
Preference number: 4 (lower is better)
Translates to: PATQQAPREAGPFTQTLPPGPPR*EPLARD
Trigger: GTCGCGAGCCAAAGGCTCTCACCTGGGTGGTCCCGG...GGGGAGGGTCTGTGTGAAGGGGCCGGCTTCTCTTGGTGCCTGCTGGGTTGCAGG
68% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENST00000397802.8
CDS-3UTR GCA 90 bp CCTGCAACCCAGCAGGCACCAAGAGAAGCCGGCCCCTTCACACAGACCCTCCCCGTCCCAGAGGCCAGGTaGCACGACGCCAGCAAAGGG +
Preference number: 4 (lower is better)
Translates to: PATQQAPREAGPFTQTLPVPEAR*HDASKG
Trigger: CCCTTTGCTGGCGTCGTGGCACCTGGCCTCTGGGAC...GGGGAGGGTCTGTGTGAAGGGGCCGGCTTCTCTTGGTGCCTGCTGGGTTGCAGG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000306433.9
ENST00000397802.8
CDS-3UTR CCA 90 bp GCCGGCCCCTTCACACAGACCCTCCCCATCTACCCTTGGAGGATGCATCAGTGGGGTCCCTGGAACGGATaGAGGGAAGGCGGCCGGGGG +
Preference number: 4 (lower is better)
Translates to: AGPFTQTLPIYPWRMHQWGPWNG*REGGRG
Trigger: CCCCCGGCCGCCTTCCCTCCATCCGTTCCAGGGACC...CCACTGATGCATCCTCCAAGGGTAGATGGGGAGGGTCTGTGTGAAGGGGCCGGC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENST00000306433.9
ENST00000397802.8
ENST00000518039.1
CDS-3UTR TCA 90 bp TGCAGTCCACACGCTTCCTGCCCCTGCAACCCAGCAGGCACCAAGAGAAGCCGGATCACCAGAGGGGACTaGCACGCGGACCCTGGCGGA +
Preference number: 4 (lower is better)
Translates to: CSPHASCPCNPAGTKRSRITRGD*HADPGG
Trigger: TCCGCCAGGGTCCGCGTGTCAGTCCCCTCTGGTGAT...CCGGCTTCTCTTGGTGCCTGCTGGGTTGCAGGGGCAGGAAGCGTGTGGACTGCA
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000397802.8
CDS-3UTR GCA 90 bp CCTGCAACCCAGCAGGCACCAAGAGAAGCCGGCCCCTTCACACAGACCCTCCCCCCTCGCCCTCGTCCATaGCCCTCTCGTTGTCGGTCT +
Preference number: 4 (lower is better)
Translates to: PATQQAPREAGPFTQTLPPRPRP*PSRCRS
Trigger: AGACCGACAACGAGAGGGGCATGGACGAGGGCGAGG...GGGGAGGGTCTGTGTGAAGGGGCCGGCTTCTCTTGGTGCCTGCTGGGTTGCAGG
66% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENST00000306433.9
ENST00000397802.8
ENST00000518039.1
CDS-3UTR GCA 90 bp CCTGCAACCCAGCAGGCACCAAGAGAAGCCGGCCCCTTCACACAGACCCTCCCCAGTCCACACGCTTCCTaGCCCTGCAACCCAGCAGGC +
Preference number: 4 (lower is better)
Translates to: PATQQAPREAGPFTQTLPSPHAS*PCNPAG
Trigger: GCCTGCTGGGTTGCAGGGGCAGGAAGCGTGTGGACT...GGGGAGGGTCTGTGTGAAGGGGCCGGCTTCTCTTGGTGCCTGCTGGGTTGCAGG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000306433.9
ENST00000397802.8
ENST00000518039.1
CDS-3UTR GCA 90 bp CCCAGCAGGCACCAAGAGAAGCCGGCCCCTTCACACAGACCCTCCCCATCTACCCCTCGCCCTCGTCCATaGCCCTCTCGTTGTCGGTCT +
Preference number: 4 (lower is better)
Translates to: PSRHQEKPAPSHRPSPSTPRPRP*PSRCRS
Trigger: AGACCGACAACGAGAGGGGCATGGACGAGGGCGAGG...GGTAGATGGGGAGGGTCTGTGTGAAGGGGCCGGCTTCTCTTGGTGCCTGCTGGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENST00000306433.9
ENST00000397802.8
ENST00000518039.1
CDS-3UTR CCA 90 bp TGCAGTCCACACGCTTCCTGCCCCTGCAACCCAGCAGGCACCAAGAGAAGCCGGCCCTTTGCCAGGGCCTaGTCCAAGAGTGGGCACGTG +
Preference number: 4 (lower is better)
Translates to: CSPHASCPCNPAGTKRSRPFARA*SKSGHV
Trigger: CACGTGCCCACTCTTGGACCAGGCCCTGGCAAAGGG...CCGGCTTCTCTTGGTGCCTGCTGGGTTGCAGGGGCAGGAAGCGTGTGGACTGCA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000306433.9
ENST00000397802.8
CDS-3UTR TCA 90 bp GCAGTCCACACGCTTCCTGCCCCTGCAACCCAGCAGGCACCAAGAGAAGCCGGCGCATCAGGCCCAGGGTaGGGACGGGATATAAAGCAG +
Preference number: 4 (lower is better)
Translates to: AVHTLPAPATQQAPREAGASGPG*GRDIKQ
Trigger: CTGCTTTATATCCCGTCCTCACCCTGGGCCTGATGC...GCCGGCTTCTCTTGGTGCCTGCTGGGTTGCAGGGGCAGGAAGCGTGTGGACTGC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000306433.9
ENST00000397802.8
CDS-3UTR GCA 90 bp AAGCCGGCCCCTTCACACAGACCCTCCCCATCTACCCTTGGAGGATGCATCAGTCGGTCCCCCAGTCGGTaGGTCCCTCCAGTGGCCTCT +
Preference number: 4 (lower is better)
Translates to: KPAPSHRPSPSTLGGCISRSPSR*VPPVAS
Trigger: AGAGGCCACTGGAGGGACGCACCGACTGGGGGACCG...ACTGATGCATCCTCCAAGGGTAGATGGGGAGGGTCTGTGTGAAGGGGCCGGCTT
63% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000397802.8
CDS-3UTR CCA 90 bp GCCGGCCCCTTCACACAGACCCTCCCCATCTACCCTTGGAGGATGCATCAGTGGCAGCCTCACAGCTGCTaGCTGGGCAGGTTGAGGGCT +
Preference number: 4 (lower is better)
Translates to: AGPFTQTLPIYPWRMHQWQPHSC*LGRLRA
Trigger: AGCCCTCAACCTGCCCAGCCAGCAGCTGTGAGGCTG...CCACTGATGCATCCTCCAAGGGTAGATGGGGAGGGTCTGTGTGAAGGGGCCGGC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000306433.9
ENST00000397802.8
CDS-3UTR CCA 90 bp TGCAACCCAGCAGGCACCAAGAGAAGCCGGCCCCTTCACACAGACCCTCCCCATCCCTTTGCCAGGGCCTaGTCCAAGAGTGGGCACGTG +
Preference number: 4 (lower is better)
Translates to: CNPAGTKRSRPLHTDPPHPFARA*SKSGHV
Trigger: CACGTGCCCACTCTTGGACCAGGCCCTGGCAAAGGG...ATGGGGAGGGTCTGTGTGAAGGGGCCGGCTTCTCTTGGTGCCTGCTGGGTTGCA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000306433.9
ENST00000397802.8
CDS-3UTR TCA 90 bp TCTGGAGCAGGCAGCAGCCGTGGGCACAGGCGCCGTCCTCCTCCACCTGCTCATGGAAGCGGTTCTTCCTaGGCCCCTATGGTTCATACT +
Preference number: 4 (lower is better)
Translates to: SGAGSSRGHRRRPPPPAHGSGSS*APMVHT
Trigger: AGTATGAACCATAGGGGCTCAGGAAGAACCGCTTCC...ATGAGCAGGTGGAGGAGGACGGCGCCTGTGCCCACGGCTGCTGCCTGCTCCAGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000306433.9
ENST00000397802.8
CDS-3UTR TCA 90 bp TCTGGAGCAGGCAGCAGCCGTGGGCACAGGCGCCGTCCTCCTCCACCTGCTCATCCAATGGAGCTGACATaGGCTTCAGCACCAGAAAGG +
Preference number: 4 (lower is better)
Translates to: SGAGSSRGHRRRPPPPAHPMELT*ASAPER
Trigger: CCTTTCTGGTGCTGAAGCTCATGTCAGCTCCATTGG...ATGAGCAGGTGGAGGAGGACGGCGCCTGTGCCCACGGCTGCTGCCTGCTCCAGA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000306433.9
ENST00000397802.8
CDS-3UTR TCA 90 bp TGCAGTCCACACGCTTCCTGCCCCTGCAACCCAGCAGGCACCAAGAGAAGCCGGGGCGGGAGGATCACTTaGACCTGGGAGACAGAGTTG +
Preference number: 4 (lower is better)
Translates to: CSPHASCPCNPAGTKRSRGGRIT*TWETEL
Trigger: CAACTCTGTCTCCCAGGTTCAAGTGATCCTCCCGCC...CCGGCTTCTCTTGGTGCCTGCTGGGTTGCAGGGGCAGGAAGCGTGTGGACTGCA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000306433.9
ENST00000397802.8
CDS-3UTR GCA 90 bp TGCAGTCCACACGCTTCCTGCCCCTGCAACCCAGCAGGCACCAAGAGAAGCCGGTGTCCGTCCTCGCCCTaGACCTCTGTCTTGATAGGC +
Preference number: 4 (lower is better)
Translates to: CSPHASCPCNPAGTKRSRCPSSP*TSVLIG
Trigger: GCCTATCAAGACAGAGGTGCAGGGCGAGGACGGACA...CCGGCTTCTCTTGGTGCCTGCTGGGTTGCAGGGGCAGGAAGCGTGTGGACTGCA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000306433.9
ENST00000397802.8
CDS-3UTR GCA 90 bp GCAGTCCACACGCTTCCTGCCCCTGCAACCCAGCAGGCACCAAGAGAAGCCGGCTTCCTTCCGACATGTTaGCTGGGAGAGAAGGGGCGA +
Preference number: 4 (lower is better)
Translates to: AVHTLPAPATQQAPREAGFLPTC*LGEKGR
Trigger: TCGCCCCTTCTCTCCCAGGCAACATGTCGGAAGGAA...GCCGGCTTCTCTTGGTGCCTGCTGGGTTGCAGGGGCAGGAAGCGTGTGGACTGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000397802.8
CDS-3UTR CCA 90 bp TGCAGTCCACACGCTTCCTGCCCCTGCAACCCAGCAGGCACCAAGAGAAGCCGGAAAGGCTGGAGTGAGTaGGCTCAGTGGGCCCCTTCT +
Preference number: 4 (lower is better)
Translates to: CSPHASCPCNPAGTKRSRKGWSE*AQWAPS
Trigger: AGAAGGGGCCCACTGAGCCCACTCACTCCAGCCTTT...CCGGCTTCTCTTGGTGCCTGCTGGGTTGCAGGGGCAGGAAGCGTGTGGACTGCA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000306433.9
ENST00000397802.8
ENST00000518039.1
CDS-3UTR CCA 90 bp GCCCCTGCAACCCAGCAGGCACCAAGAGAAGCCGGCCCCTTCACACAGACCCTCAAGCCCTGGGGGACCTaGAACAATGGTTGCCAAAGG +
Preference number: 4 (lower is better)
Translates to: APATQQAPREAGPFTQTLKPWGT*NNGCQR
Trigger: CCTTTGGCAACCATTGTTCCAGGTCCCCCAGGGCTT...GAGGGTCTGTGTGAAGGGGCCGGCTTCTCTTGGTGCCTGCTGGGTTGCAGGGGC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENST00000306433.9
ENST00000397802.8
ENST00000518039.1
CDS-3UTR CCA 90 bp CCCAGCAGGCACCAAGAGAAGCCGGCCCCTTCACACAGACCCTCCCCATCTACCGCAGGGAACATGTCCTaGGCCCAACATGTCCCCCAA +
Preference number: 4 (lower is better)
Translates to: PSRHQEKPAPSHRPSPSTAGNMS*AQHVPQ
Trigger: TTGGGGGACATGTTGGGCCCAGGACATGTTCCCTGC...GGTAGATGGGGAGGGTCTGTGTGAAGGGGCCGGCTTCTCTTGGTGCCTGCTGGG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000306433.9
ENST00000397802.8
3UTR CAA 72 bp CCAGAGGCCAGGTGCCACGACGCCAGCAAAGGGAAGTaGTGCCATCAGCGTCTAACAGCCACACACGCTGCC +
Preference number: 4 (lower is better)
Translates to: PEARCHDASKGK*CHQRLTATHAA
Trigger: GGCAGCGTGTGTGGCTGTTAGACGCTGATGGCACAACTTCCCTTTGCTGGCGTCGTGGCACCTGGCCTCTGG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000306433.9
ENST00000397802.8
CDS-3UTR TCA 90 bp CCAGGGGATACACTAGTCGACCCATCCCCCTTTGCCAGGGCCTGGTCCAAGAGTGCTGGCTGGGCAGGTTaGGGGCTTTGTAGGAGAAGC +
Preference number: 4 (lower is better)
Translates to: PGDTLVDPSPFARAWSKSAGWAG*GLCRRS
Trigger: GCTTCTCCTACAAAGCCCTCAACCTGCCCAGCCAGC...ACTCTTGGACCAGGCCCTGGCAAAGGGGGATGGGTCGACTAGTGTATCCCCTGG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000306433.9
ENST00000397802.8
CDS-3UTR TCA 90 bp GCCCCTGCAACCCAGCAGGCACCAAGAGAAGCCGGCCCCTTCACACAGACCCTCACTGTCCAATGGAGCTaGCATGAGCTTCAGCACCAG +
Preference number: 4 (lower is better)
Translates to: APATQQAPREAGPFTQTLTVQWS*HELQHQ
Trigger: CTGGTGCTGAAGCTCATGTCAGCTCCATTGGACAGT...GAGGGTCTGTGTGAAGGGGCCGGCTTCTCTTGGTGCCTGCTGGGTTGCAGGGGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000306433.9
ENST00000397802.8
CDS-3UTR TCA 90 bp TGCAACCCAGCAGGCACCAAGAGAAGCCGGCCCCTTCACACAGACCCTCCCCATGGCGGGAGGATCACTTaGACCTGGGAGACAGAGTTG +
Preference number: 4 (lower is better)
Translates to: CNPAGTKRSRPLHTDPPHGGRIT*TWETEL
Trigger: CAACTCTGTCTCCCAGGTTCAAGTGATCCTCCCGCC...ATGGGGAGGGTCTGTGTGAAGGGGCCGGCTTCTCTTGGTGCCTGCTGGGTTGCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000306433.9
ENST00000397802.8
CDS-3UTR GCA 90 bp CCTGCAACCCAGCAGGCACCAAGAGAAGCCGGCCCCTTCACACAGACCCTCCCCCTTGGTAGAAATGCATaGCTCAGGGGCCTGACCAAG +
Preference number: 4 (lower is better)
Translates to: PATQQAPREAGPFTQTLPLGRNA*LRGLTK
Trigger: CTTGGTCAGGCCCCTGAGGCATGCATTTCTACCAAG...GGGGAGGGTCTGTGTGAAGGGGCCGGCTTCTCTTGGTGCCTGCTGGGTTGCAGG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000306433.9
ENST00000397802.8
CDS-3UTR CCA 90 bp TCTGGAGCAGGCAGCAGCCGTGGGCACAGGCGCCGTCCTCCTCCACCTGCTCATTCAGTGGGCCCCTTCTaGGTCTCACAGATTCAAGAA +
Preference number: 4 (lower is better)
Translates to: SGAGSSRGHRRRPPPPAHSVGPF*VSQIQE
Trigger: TTCTTGAATCTGTGAGACCCAGAAGGGGCCCACTGA...ATGAGCAGGTGGAGGAGGACGGCGCCTGTGCCCACGGCTGCTGCCTGCTCCAGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000306433.9
ENST00000397802.8
ENST00000518039.1
CDS-3UTR CCA 90 bp GCAGTCCACACGCTTCCTGCCCCTGCAACCCAGCAGGCACCAAGAGAAGCCGGCCTCCCCATCTACCCTTaGAGGATGCATCAGTGGAAG +
Preference number: 4 (lower is better)
Translates to: AVHTLPAPATQQAPREAGLPIYP*RMHQWK
Trigger: CTTCCACTGATGCATCCTCCAAGGGTAGATGGGGAG...GCCGGCTTCTCTTGGTGCCTGCTGGGTTGCAGGGGCAGGAAGCGTGTGGACTGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000306433.9
ENST00000397802.8
ENST00000518039.1
CDS-3UTR CCA 90 bp GCCCCTGCAACCCAGCAGGCACCAAGAGAAGCCGGCCCCTTCACACAGACCCTCGCTTTTGTAGGGTGCTaGGAGGGGTCTCTGACTTCT +
Preference number: 4 (lower is better)
Translates to: APATQQAPREAGPFTQTLAFVGC*EGSLTS
Trigger: AGAAGTCAGAGACCCCTCCCAGCACCCTACAAAAGC...GAGGGTCTGTGTGAAGGGGCCGGCTTCTCTTGGTGCCTGCTGGGTTGCAGGGGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENST00000306433.9
ENST00000397802.8
CDS-3UTR TCA 90 bp GCCCCTGCAACCCAGCAGGCACCAAGAGAAGCCGGCCCCTTCACACAGACCCTCGCTGGGAGGGGTCTCTaGCTTCTTCCTTTCTATTAC +
Preference number: 4 (lower is better)
Translates to: APATQQAPREAGPFTQTLAGRGL*LLPFYY
Trigger: GTAATAGAAAGGAAGAAGTCAGAGACCCCTCCCAGC...GAGGGTCTGTGTGAAGGGGCCGGCTTCTCTTGGTGCCTGCTGGGTTGCAGGGGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000306433.9
ENST00000397802.8
CDS-3UTR TCA 90 bp TGCAGTCCACACGCTTCCTGCCCCTGCAACCCAGCAGGCACCAAGAGAAGCCGGACACACGCTGCCGCATaGGACCTTTTTCTAACCTGC +
Preference number: 4 (lower is better)
Translates to: CSPHASCPCNPAGTKRSRTHAAA*DLFLTC
Trigger: GCAGGTTAGAAAAAGGTCTCATGCGGCAGCGTGTGT...CCGGCTTCTCTTGGTGCCTGCTGGGTTGCAGGGGCAGGAAGCGTGTGGACTGCA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000306433.9
ENST00000397802.8
CDS-3UTR TCA 90 bp TGCAGTCCACACGCTTCCTGCCCCTGCAACCCAGCAGGCACCAAGAGAAGCCGGCCATCATTTGCAGAATaGTGCTTGGCGCAGGAGCAG +
Preference number: 4 (lower is better)
Translates to: CSPHASCPCNPAGTKRSRPSFAE*CLAQEQ
Trigger: CTGCTCCTGCGCCAAGCATCATTCTGCAAATGATGG...CCGGCTTCTCTTGGTGCCTGCTGGGTTGCAGGGGCAGGAAGCGTGTGGACTGCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000306433.9
ENST00000397802.8
CDS-3UTR GCA 90 bp GCCGGCCCCTTCACACAGACCCTCCCCATCTACCCTTGGAGGATGCATCAGTGGCTCCCTCAGCAGCTCTaGCACAGATACATCCTTCGG +
Preference number: 4 (lower is better)
Translates to: AGPFTQTLPIYPWRMHQWLPQQL*HRYILR
Trigger: CCGAAGGATGTATCTGTGGCAGAGCTGCTGAGGGAG...CCACTGATGCATCCTCCAAGGGTAGATGGGGAGGGTCTGTGTGAAGGGGCCGGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000306433.9
ENST00000397802.8
CDS-3UTR GCA 90 bp CCCAGCAGGCACCAAGAGAAGCCGGCCCCTTCACACAGACCCTCCCCATCTACCCCGTCCTCCTCCACCTaGTCATTTTACCGGTGTTTG +
Preference number: 4 (lower is better)
Translates to: PSRHQEKPAPSHRPSPSTPSSST*SFYRCL
Trigger: CAAACACCGGTAAAATGAGCAGGTGGAGGAGGACGG...GGTAGATGGGGAGGGTCTGTGTGAAGGGGCCGGCTTCTCTTGGTGCCTGCTGGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 3 transcripts:
ENST00000306433.9
ENST00000397802.8
ENST00000518039.1
CDS-3UTR GCA 90 bp CCAGGGGATACACTAGTCGACCCATCCCCCTTTGCCAGGGCCTGGTCCAAGAGTGTGCCATCTCCACGCTaGAGGAAGGTCACTGTGCCA +
Preference number: 4 (lower is better)
Translates to: PGDTLVDPSPFARAWSKSVPSPR*RKVTVP
Trigger: TGGCACAGTGACCTTCCTGCAGCGTGGAGATGGCAC...ACTCTTGGACCAGGCCCTGGCAAAGGGGGATGGGTCGACTAGTGTATCCCCTGG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000306433.9
ENST00000397802.8
CDS-3UTR GCA 90 bp GCCGGCCCCTTCACACAGACCCTCCCCATCTACCCTTGGAGGATGCATCAGTGGGCTCAAGGGCAAGTGTaGTCAGTGCCAGGGGATACA +
Preference number: 4 (lower is better)
Translates to: AGPFTQTLPIYPWRMHQWAQGQV*SVPGDT
Trigger: TGTATCCCCTGGCACTGAGCACACTTGCCCTTGAGC...CCACTGATGCATCCTCCAAGGGTAGATGGGGAGGGTCTGTGTGAAGGGGCCGGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000306433.9
ENST00000397802.8
CDS-3UTR CCA 90 bp GAGTCAGATTCAAACCCAACCGTGACTCGACAGCCTGGACTCTGCCACTTAAACGGTCCCTGGAACGGATaGAGGGAAGGCGGCCGGGGG +
Preference number: 4 (lower is better)
Translates to: ESDSNPTVTRQPGLCHLNGPWNG*REGGRG
Trigger: CCCCCGGCCGCCTTCCCTCCATCCGTTCCAGGGACC...GTTTAAGTGGCAGAGTCCAGGCTGTCGAGTCACGGTTGGGTTTGAATCTGACTC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000306433.9
ENST00000397802.8
CDS-3UTR CCA 90 bp TTAGACCAAACAGGGCTTCCCAGCACAGGTTTCCAAGGAACCCTTTCTGCTCCAAGCAGGCAGCAGCCGTaGGCACAGGCGCCGTCCTCC +
Preference number: 4 (lower is better)
Translates to: LDQTGLPSTGFQGTLSAPSRQQP*AQAPSS
Trigger: GGAGGACGGCGCCTGTGCCCACGGCTGCTGCCTGCT...TGGAGCAGAAAGGGTTCCTTGGAAACCTGTGCTGGGAAGCCCTGTTTGGTCTAA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000306433.9
ENST00000397802.8
CDS-3UTR CCA 90 bp AGCCGGCCCCTTCACACAGACCCTCCCCATCTACCCTTGGAGGATGCATCAGTGCACACAGGAGGCACCTaGCTAACAGGAGCCAGGAGA +
Preference number: 4 (lower is better)
Translates to: SRPLHTDPPHLPLEDASVHTGGT*LTGARR
Trigger: TCTCCTGGCTCCTGTTAGCCAGGTGCCTCCTGTGTG...CACTGATGCATCCTCCAAGGGTAGATGGGGAGGGTCTGTGTGAAGGGGCCGGCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000306433.9
ENST00000397802.8
CDS-3UTR CCA 90 bp TCTGGAGCAGGCAGCAGCCGTGGGCACAGGCGCCGTCCTCCTCCACCTGCTCATTGTCCACTCTGGCTGTaGACACCATCATTTGCAGAA +
Preference number: 4 (lower is better)
Translates to: SGAGSSRGHRRRPPPPAHCPLWL*TPSFAE
Trigger: TTCTGCAAATGATGGTGTCCACAGCCAGAGTGGACA...ATGAGCAGGTGGAGGAGGACGGCGCCTGTGCCCACGGCTGCTGCCTGCTCCAGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000306433.9
ENST00000397802.8
CDS-3UTR CCA 90 bp AGCCGGCCCCTTCACACAGACCCTCCCCATCTACCCTTGGAGGATGCATCAGTGTTCCGACATGTTGCCTaGGAGAGAAGGGGCGACGAG +
Preference number: 4 (lower is better)
Translates to: SRPLHTDPPHLPLEDASVFRHVA*ERRGDE
Trigger: CTCGTCGCCCCTTCTCTCCCAGGCAACATGTCGGAA...CACTGATGCATCCTCCAAGGGTAGATGGGGAGGGTCTGTGTGAAGGGGCCGGCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000397802.8
CDS-3UTR TCA 90 bp GCAGTCCACACGCTTCCTGCCCCTGCAACCCAGCAGGCACCAAGAGAAGCCGGCTCCAGTCCTCTACAGTaGGAAGAGCCCAGAATAACA +
Preference number: 4 (lower is better)
Translates to: AVHTLPAPATQQAPREAGSSPLQ*EEPRIT
Trigger: TGTTATTCTGGGCTCTTCTCACTGTAGAGGACTGGA...GCCGGCTTCTCTTGGTGCCTGCTGGGTTGCAGGGGCAGGAAGCGTGTGGACTGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000306433.9
ENST00000397802.8
CDS-3UTR GCA 90 bp GAAGCCGGCCCCTTCACACAGACCCTCCCCATCTACCCTTGGAGGATGCATCAGCTCCCTCAGCAGCTCTaGCACAGATACATCCTTCGG +
Preference number: 4 (lower is better)
Translates to: EAGPFTQTLPIYPWRMHQLPQQL*HRYILR
Trigger: CCGAAGGATGTATCTGTGGCAGAGCTGCTGAGGGAG...CTGATGCATCCTCCAAGGGTAGATGGGGAGGGTCTGTGTGAAGGGGCCGGCTTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000306433.9
ENST00000397802.8
CDS-3UTR GCA 90 bp TCTGGAGCAGGCAGCAGCCGTGGGCACAGGCGCCGTCCTCCTCCACCTGCTCATGAACATACAAGTTTGTaGTTCACGTGTCCCAGGACT +
Preference number: 4 (lower is better)
Translates to: SGAGSSRGHRRRPPPPAHEHTSL*FTCPRT
Trigger: AGTCCTGGGACACGTGAAGCACAAACTTGTATGTTC...ATGAGCAGGTGGAGGAGGACGGCGCCTGTGCCCACGGCTGCTGCCTGCTCCAGA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000306433.9
ENST00000397802.8
ENST00000518039.1
CDS-3UTR GCA 90 bp TGCAACCCAGCAGGCACCAAGAGAAGCCGGCCCCTTCACACAGACCCTCCCCATCCGTCCTCCTCCACCTaGTCATTTTACCGGTGTTTG +
Preference number: 4 (lower is better)
Translates to: CNPAGTKRSRPLHTDPPHPSSST*SFYRCL
Trigger: CAAACACCGGTAAAATGAGCAGGTGGAGGAGGACGG...ATGGGGAGGGTCTGTGTGAAGGGGCCGGCTTCTCTTGGTGCCTGCTGGGTTGCA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENST00000306433.9
ENST00000397802.8
ENST00000518039.1
CDS-3UTR GCA 90 bp AAGCCGGCCCCTTCACACAGACCCTCCCCATCTACCCTTGGAGGATGCATCAGTGTGCCATCTCCACGCTaGAGGAAGGTCACTGTGCCA +
Preference number: 4 (lower is better)
Translates to: KPAPSHRPSPSTLGGCISVPSPR*RKVTVP
Trigger: TGGCACAGTGACCTTCCTGCAGCGTGGAGATGGCAC...ACTGATGCATCCTCCAAGGGTAGATGGGGAGGGTCTGTGTGAAGGGGCCGGCTT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000306433.9
ENST00000397802.8
ENST00000518039.1
CDS-3UTR GCA 90 bp TGCAGTCCACACGCTTCCTGCCCCTGCAACCCAGCAGGCACCAAGAGAAGCCGGAGCAAAGGGAAGTTGTaGCATCAGCGTCTAACAGCC +
Preference number: 4 (lower is better)
Translates to: CSPHASCPCNPAGTKRSRSKGKL*HQRLTA
Trigger: GGCTGTTAGACGCTGATGGCACAACTTCCCTTTGCT...CCGGCTTCTCTTGGTGCCTGCTGGGTTGCAGGGGCAGGAAGCGTGTGGACTGCA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000306433.9
ENST00000397802.8
CDS-3UTR GCA 90 bp GAAGTTGTGCCATCAGCGTCTAACAGCCACACACGCTGCCGCATGAGACCTTTTGTCCCAGAGGCCAGGTaGCACGACGCCAGCAAAGGG +
Preference number: 4 (lower is better)
Translates to: EVVPSASNSHTRCRMRPFVPEAR*HDASKG
Trigger: CCCTTTGCTGGCGTCGTGGCACCTGGCCTCTGGGAC...AAAAGGTCTCATGCGGCAGCGTGTGTGGCTGTTAGACGCTGATGGCACAACTTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000306433.9
ENST00000397802.8
CDS-3UTR GCA 90 bp GCAGTCCACACGCTTCCTGCCCCTGCAACCCAGCAGGCACCAAGAGAAGCCGGCGTGGACACCATCATTTaGAGAATGATGCTTGGCGCA +
Preference number: 4 (lower is better)
Translates to: AVHTLPAPATQQAPREAGVDTII*RMMLGA
Trigger: TGCGCCAAGCATCATTCTGCAAATGATGGTGTCCAC...GCCGGCTTCTCTTGGTGCCTGCTGGGTTGCAGGGGCAGGAAGCGTGTGGACTGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000306433.9
ENST00000397802.8
CDS-3UTR CCA 90 bp CCCAGCAGGCACCAAGAGAAGCCGGCCCCTTCACACAGACCCTCCCCATCTACCTCAGTGGGCCCCTTCTaGGTCTCACAGATTCAAGAA +
Preference number: 4 (lower is better)
Translates to: PSRHQEKPAPSHRPSPSTSVGPF*VSQIQE
Trigger: TTCTTGAATCTGTGAGACCCAGAAGGGGCCCACTGA...GGTAGATGGGGAGGGTCTGTGTGAAGGGGCCGGCTTCTCTTGGTGCCTGCTGGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENST00000306433.9
ENST00000397802.8
ENST00000518039.1
CDS-3UTR TCA 90 bp CCCAGCAGGCACCAAGAGAAGCCGGCCCCTTCACACAGACCCTCCCCATCTACCGACAACACAGTACAATaGCCTGGTAAAGGGAACAGG +
Preference number: 4 (lower is better)
Translates to: PSRHQEKPAPSHRPSPSTDNTVQ*PGKGNR
Trigger: CCTGTTCCCTTTACCAGGTCATTGTACTGTGTTGTC...GGTAGATGGGGAGGGTCTGTGTGAAGGGGCCGGCTTCTCTTGGTGCCTGCTGGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000306433.9
ENST00000397802.8
CDS-3UTR TCA 90 bp CCAGGGGATACACTAGTCGACCCATCCCCCTTTGCCAGGGCCTGGTCCAAGAGTCCATCATTTGCAGAATaGTGCTTGGCGCAGGAGCAG +
Preference number: 4 (lower is better)
Translates to: PGDTLVDPSPFARAWSKSPSFAE*CLAQEQ
Trigger: CTGCTCCTGCGCCAAGCATCATTCTGCAAATGATGG...ACTCTTGGACCAGGCCCTGGCAAAGGGGGATGGGTCGACTAGTGTATCCCCTGG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000306433.9
ENST00000397802.8
CDS-3UTR GCA 90 bp AGCCGGCCCCTTCACACAGACCCTCCCCATCTACCCTTGGAGGATGCATCAGTGCTGCAAAGGAAAGAGTaGAGGGAACATGTCCTGGGC +
Preference number: 4 (lower is better)
Translates to: SRPLHTDPPHLPLEDASVLQRKE*REHVLG
Trigger: GCCCAGGACATGTTCCCTGCACTCTTTCCTTTGCAG...CACTGATGCATCCTCCAAGGGTAGATGGGGAGGGTCTGTGTGAAGGGGCCGGCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000306433.9
ENST00000397802.8
CDS-3UTR GCA 90 bp GCCGGCCCCTTCACACAGACCCTCCCCATCTACCCTTGGAGGATGCATCAGTGGAGCAAAGGGAAGTTGTaGCATCAGCGTCTAACAGCC +
Preference number: 4 (lower is better)
Translates to: AGPFTQTLPIYPWRMHQWSKGKL*HQRLTA
Trigger: GGCTGTTAGACGCTGATGGCACAACTTCCCTTTGCT...CCACTGATGCATCCTCCAAGGGTAGATGGGGAGGGTCTGTGTGAAGGGGCCGGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000306433.9
ENST00000397802.8
CDS-3UTR GCA 90 bp TGCAGTCCACACGCTTCCTGCCCCTGCAACCCAGCAGGCACCAAGAGAAGCCGGAATTGTCTATCCAACTaGCACTCCAGCTTCCTCCCT +
Preference number: 4 (lower is better)
Translates to: CSPHASCPCNPAGTKRSRNCLSN*HSSFLP
Trigger: AGGGAGGAAGCTGGAGTGGCAGTTGGATAGACAATT...CCGGCTTCTCTTGGTGCCTGCTGGGTTGCAGGGGCAGGAAGCGTGTGGACTGCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000306433.9
ENST00000397802.8
CDS-3UTR GCA 90 bp TCTGGAGCAGGCAGCAGCCGTGGGCACAGGCGCCGTCCTCCTCCACCTGCTCATGGTACAAGCATTCTCTaGCAATTTGGCTTCCTTTCA +
Preference number: 4 (lower is better)
Translates to: SGAGSSRGHRRRPPPPAHGTSIL*QFGFLS
Trigger: TGAAAGGAAGCCAAATTGGCAGAGAATGCTTGTACC...ATGAGCAGGTGGAGGAGGACGGCGCCTGTGCCCACGGCTGCTGCCTGCTCCAGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000518039.1
CDS-3UTR CCA 90 bp GCCGGCCCCTTCACACAGACCCTCCCCATCTACCCTTGGAGGATGCATCAGTGGAGTGCCTGCTGGTTCTaGCCTTGTGCAGTTTTCATC +
Preference number: 4 (lower is better)
Translates to: AGPFTQTLPIYPWRMHQWSACWF*PCAVFI
Trigger: GATGAAAACTGCACAAGGCCAGAACCAGCAGGCACT...CCACTGATGCATCCTCCAAGGGTAGATGGGGAGGGTCTGTGTGAAGGGGCCGGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000306433.9
ENST00000397802.8
CDS-3UTR CCA 90 bp ACACGCTGCCGCATGAGACCTTTTTCTAACCTGCAAACGTCTCCCCAGCTGAACCAGCCTCACAGCTGCTaGCTGGGCAGGTTGAGGGCT +
Preference number: 4 (lower is better)
Translates to: TRCRMRPFSNLQTSPQLNQPHSC*LGRLRA
Trigger: AGCCCTCAACCTGCCCAGCCAGCAGCTGTGAGGCTG...GTTCAGCTGGGGAGACGTTTGCAGGTTAGAAAAAGGTCTCATGCGGCAGCGTGT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000306433.9
ENST00000397802.8
CDS-3UTR CCA 90 bp GCAGTCCACACGCTTCCTGCCCCTGCAACCCAGCAGGCACCAAGAGAAGCCGGCTACTACTGTCCACTCTaGCTGTGGACACCATCATTT +
Preference number: 4 (lower is better)
Translates to: AVHTLPAPATQQAPREAGYYCPL*LWTPSF
Trigger: AAATGATGGTGTCCACAGCCAGAGTGGACAGTAGTA...GCCGGCTTCTCTTGGTGCCTGCTGGGTTGCAGGGGCAGGAAGCGTGTGGACTGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000306433.9
ENST00000397802.8
CDS-3UTR CCA 90 bp AGCCGGCCCCTTCACACAGACCCTCCCCATCTACCCTTGGAGGATGCATCAGTGCCAAGAGTGGGCACGTaGCCCCACTCTATAAAGAGA +
Preference number: 4 (lower is better)
Translates to: SRPLHTDPPHLPLEDASVPRVGT*PHSIKR
Trigger: TCTCTTTATAGAGTGGGGCCACGTGCCCACTCTTGG...CACTGATGCATCCTCCAAGGGTAGATGGGGAGGGTCTGTGTGAAGGGGCCGGCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000306433.9
ENST00000397802.8
CDS-3UTR CCA 90 bp GCCGGCCCCTTCACACAGACCCTCCCCATCTACCCTTGGAGGATGCATCAGTGGGGAAATAGCAAACACTaGGCACTCCAAAAGGGGGTG +
Preference number: 4 (lower is better)
Translates to: AGPFTQTLPIYPWRMHQWGNSKH*ALQKGV
Trigger: CACCCCCTTTTGGAGTGCCCAGTGTTTGCTATTTCC...CCACTGATGCATCCTCCAAGGGTAGATGGGGAGGGTCTGTGTGAAGGGGCCGGC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 21 nt.
Matches the following 2 transcripts:
ENST00000306433.9
ENST00000397802.8
CDS-3UTR CCA 90 bp ACCAGGGAAAACCCCAGCCCTACTGTCAAGACAAGAGGAGAAGCTGTTCCTCCACCAGGTGAGAGCCTTTaGCTCGCGACACGCCCTCTC +
Preference number: 4 (lower is better)
Translates to: TRENPSPTVKTRGEAVPPPGESL*LATRPL
Trigger: GAGAGGGCGTGTCGCGAGCCAAAGGCTCTCACCTGG...TGGAGGAACAGCTTCTCCTCTTGTCTTGACAGTAGGGCTGGGGTTTTCCCTGGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000397802.8
CDS-3UTR CCA 90 bp ATAGAACAATCTGACACCATAAATTTAGGGCATCAGGCCCAGGGTGAGGACGGGCTGACACGCGGACCCTaGCGGAACCCCACCCCCTTG +
Preference number: 4 (lower is better)
Translates to: IEQSDTINLGHQAQGEDGLTRGP*RNPTPL
Trigger: CAAGGGGGTGGGGTTCCGCCAGGGTCCGCGTGTCAG...CCCGTCCTCACCCTGGGCCTGATGCCCTAAATTTATGGTGTCAGATTGTTCTAT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000397802.8
CDS-3UTR TCA 90 bp CCTGCAACCCAGCAGGCACCAAGAGAAGCCGGCCCCTTCACACAGACCCTCCCCACTTCGGCTCATACATaGGTACTAACTGCAAAGGAA +
Preference number: 4 (lower is better)
Translates to: PATQQAPREAGPFTQTLPTSAHT*VLTAKE
Trigger: TTCCTTTGCAGTTAGTACTCATGTATGAGCCGAAGT...GGGGAGGGTCTGTGTGAAGGGGCCGGCTTCTCTTGGTGCCTGCTGGGTTGCAGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000306433.9
ENST00000397802.8
CDS-3UTR TCA 90 bp TGCAACCCAGCAGGCACCAAGAGAAGCCGGCCCCTTCACACAGACCCTCCCCATTCCAGTCCTCTACAGTaGGAAGAGCCCAGAATAACA +
Preference number: 4 (lower is better)
Translates to: CNPAGTKRSRPLHTDPPHSSPLQ*EEPRIT
Trigger: TGTTATTCTGGGCTCTTCTCACTGTAGAGGACTGGA...ATGGGGAGGGTCTGTGTGAAGGGGCCGGCTTCTCTTGGTGCCTGCTGGGTTGCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000306433.9
ENST00000397802.8
CDS-3UTR TCA 90 bp TGCAACCCAGCAGGCACCAAGAGAAGCCGGCCCCTTCACACAGACCCTCCCCATTCAAGCCAAGACATCTaGATGGGCGAAATGAACGTG +
Preference number: 4 (lower is better)
Translates to: CNPAGTKRSRPLHTDPPHSSQDI*MGEMNV
Trigger: CACGTTCATTTCGCCCATTCAGATGTCTTGGCTTGA...ATGGGGAGGGTCTGTGTGAAGGGGCCGGCTTCTCTTGGTGCCTGCTGGGTTGCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000306433.9
ENST00000397802.8
CDS-3UTR GCA 90 bp GAGTCAGATTCAAACCCAACCGTGACTCGACAGCCTGGACTCTGCCACTTAAACCCTCGCCCTCGTCCATaGCCCTCTCGTTGTCGGTCT +
Preference number: 4 (lower is better)
Translates to: ESDSNPTVTRQPGLCHLNPRPRP*PSRCRS
Trigger: AGACCGACAACGAGAGGGGCATGGACGAGGGCGAGG...GTTTAAGTGGCAGAGTCCAGGCTGTCGAGTCACGGTTGGGTTTGAATCTGACTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000306433.9
ENST00000397802.8
CDS-3UTR GCA 90 bp GGAGGCTCAGAAAGGTTAGGTAGTTTGTCCAAGGACACAGAACCAGGAACTGGCAGTCCACACGCTTCCTaGCCCTGCAACCCAGCAGGC +
Preference number: 4 (lower is better)
Translates to: GGSERLGSLSKDTEPGTGSPHAS*PCNPAG
Trigger: GCCTGCTGGGTTGCAGGGGCAGGAAGCGTGTGGACT...GCCAGTTCCTGGTTCTGTGTCCTTGGACAAACTACCTAACCTTTCTGAGCCTCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000306433.9
ENST00000397802.8
CDS-3UTR GCA 90 bp GAAGCCGGCCCCTTCACACAGACCCTCCCCATCTACCCTTGGAGGATGCATCAGAACAGCCACACACGCTaGCGCATGAGACCTTTTTCT +
Preference number: 4 (lower is better)
Translates to: EAGPFTQTLPIYPWRMHQNSHTR*RMRPFS
Trigger: AGAAAAAGGTCTCATGCGGCAGCGTGTGTGGCTGTT...CTGATGCATCCTCCAAGGGTAGATGGGGAGGGTCTGTGTGAAGGGGCCGGCTTC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000306433.9
ENST00000397802.8
CDS-3UTR GCA 90 bp CCAGGGGATACACTAGTCGACCCATCCCCCTTTGCCAGGGCCTGGTCCAAGAGTATGAGAATGGAGACCTaGTGGCCGTGCATCAGCTAT +
Preference number: 4 (lower is better)
Translates to: PGDTLVDPSPFARAWSKSMRMET*WPCISY
Trigger: ATAGCTGATGCACGGCCAGCAGGTCTCCATTCTCAT...ACTCTTGGACCAGGCCCTGGCAAAGGGGGATGGGTCGACTAGTGTATCCCCTGG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000306433.9
ENST00000397802.8
CDS-3UTR CCA 90 bp ACACGCTGCCGCATGAGACCTTTTTCTAACCTGCAAACGTCTCCCCAGCTGAACAGACTGGATCACTTCTaGACGGCCTCGCCCTCGTCC +
Preference number: 4 (lower is better)
Translates to: TRCRMRPFSNLQTSPQLNRLDHF*TASPSS
Trigger: GGACGAGGGCGAGGCCGTCCAGAAGTGATCCAGTCT...GTTCAGCTGGGGAGACGTTTGCAGGTTAGAAAAAGGTCTCATGCGGCAGCGTGT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000306433.9
ENST00000397802.8
CDS-3UTR CCA 90 bp CACCTCAGCTCCAGAGTAGCTGGGAACGAAGAATTGTATGTATTTCTGAGTGAGAGCAGGCAGCAGCCGTaGGCACAGGCGCCGTCCTCC +
Preference number: 4 (lower is better)
Translates to: HLSSRVAGNEELYVFLSESRQQP*AQAPSS
Trigger: GGAGGACGGCGCCTGTGCCCACGGCTGCTGCCTGCT...CTCACTCAGAAATACATACAATTCTTCGTTCCCAGCTACTCTGGAGCTGAGGTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000306433.9
ENST00000397802.8
CDS-3UTR CCA 90 bp CGGTTCTTCCTGAGCCCCTATGGTTCATACTGTCCCAGAGGCCAGGTGCCACGACTCCCCATCTACCCTTaGAGGATGCATCAGTGGAAG +
Preference number: 4 (lower is better)
Translates to: RFFLSPYGSYCPRGQVPRLPIYP*RMHQWK
Trigger: CTTCCACTGATGCATCCTCCAAGGGTAGATGGGGAG...TCGTGGCACCTGGCCTCTGGGACAGTATGAACCATAGGGGCTCAGGAAGAACCG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000306433.9
ENST00000397802.8
CDS-3UTR CCA 90 bp CCCAGCAGGCACCAAGAGAAGCCGGCCCCTTCACACAGACCCTCCCCATCTACCAAAGGAAGAAAGGGCTaGAGCCCAGAGTTAACCAAA +
Preference number: 4 (lower is better)
Translates to: PSRHQEKPAPSHRPSPSTKGRKG*SPELTK
Trigger: TTTGGTTAACTCTGGGCTCCAGCCCTTTCTTCCTTT...GGTAGATGGGGAGGGTCTGTGTGAAGGGGCCGGCTTCTCTTGGTGCCTGCTGGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000306433.9
ENST00000397802.8
CDS-3UTR CCA 90 bp TCTGGAGCAGGCAGCAGCCGTGGGCACAGGCGCCGTCCTCCTCCACCTGCTCATAACCAAAGTTACTGGTaGAGTCAGATTCAAACCCAA +
Preference number: 4 (lower is better)
Translates to: SGAGSSRGHRRRPPPPAHNQSYW*SQIQTQ
Trigger: TTGGGTTTGAATCTGACTCCACCAGTAACTTTGGTT...ATGAGCAGGTGGAGGAGGACGGCGCCTGTGCCCACGGCTGCTGCCTGCTCCAGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000306433.9
ENST00000397802.8
CDS-3UTR CCA 90 bp CCCAGCAGGCACCAAGAGAAGCCGGCCCCTTCACACAGACCCTCCCCATCTACCCATTCTCTGCCAATTTaGCTTCCTTTCACAGCAGGT +
Preference number: 4 (lower is better)
Translates to: PSRHQEKPAPSHRPSPSTHSLPI*LPFTAG
Trigger: ACCTGCTGTGAAAGGAAGCCAAATTGGCAGAGAATG...GGTAGATGGGGAGGGTCTGTGTGAAGGGGCCGGCTTCTCTTGGTGCCTGCTGGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000518039.1
CDS-3UTR TCA 90 bp ACCAGGGAAAACCCCAGCCCTACTGTCAAGACAAGAGGAGAAGCTGTTCCTCCAGCATCAGGCCCAGGGTaGGGACGGGATATAAAGCAG +
Preference number: 4 (lower is better)
Translates to: TRENPSPTVKTRGEAVPPASGPG*GRDIKQ
Trigger: CTGCTTTATATCCCGTCCTCACCCTGGGCCTGATGC...TGGAGGAACAGCTTCTCCTCTTGTCTTGACAGTAGGGCTGGGGTTTTCCCTGGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000306433.9
ENST00000397802.8
CDS-3UTR TCA 90 bp AGCCGGCCCCTTCACACAGACCCTCCCCATCTACCCTTGGAGGATGCATCAGTGGAAACCCAAAGTTTTTaGAGTGGGCATCATCGGCCA +
Preference number: 4 (lower is better)
Translates to: SRPLHTDPPHLPLEDASVETQSF*SGHHRP
Trigger: TGGCCGATGATGCCCACTTCAAAAACTTTGGGTTTC...CACTGATGCATCCTCCAAGGGTAGATGGGGAGGGTCTGTGTGAAGGGGCCGGCT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000306433.9
ENST00000397802.8
CDS-3UTR TCA 90 bp GGCTTTTGTAGGGTGCTGGGAGGGGTCTCTGACTTCTTCCTTTCTATTACCTGCGCTGGCTGGGCAGGTTaGGGGCTTTGTAGGAGAAGC +
Preference number: 4 (lower is better)
Translates to: GFCRVLGGVSDFFLSITCAGWAG*GLCRRS
Trigger: GCTTCTCCTACAAAGCCCTCAACCTGCCCAGCCAGC...GCAGGTAATAGAAAGGAAGAAGTCAGAGACCCCTCCCAGCACCCTACAAAAGCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000306433.9
ENST00000397802.8
CDS-3UTR TCA 90 bp GGCTTTTGTAGGGTGCTGGGAGGGGTCTCTGACTTCTTCCTTTCTATTACCTGCCATGCCTCAGGGGCCTaGCCAAGAAGGTGGACTCTC +
Preference number: 4 (lower is better)
Translates to: GFCRVLGGVSDFFLSITCHASGA*PRRWTL
Trigger: GAGAGTCCACCTTCTTGGTCAGGCCCCTGAGGCATG...GCAGGTAATAGAAAGGAAGAAGTCAGAGACCCCTCCCAGCACCCTACAAAAGCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000306433.9
ENST00000397802.8
CDS-3UTR GCA 90 bp CAATCCCCACCAGTACGCAATATACACAAACACGCACATGTGGCTGGGCGCAGTTGTCCGTCCTCGCCCTaGACCTCTGTCTTGATAGGC +
Preference number: 4 (lower is better)
Translates to: QSPPVRNIHKHAHVAGRSCPSSP*TSVLIG
Trigger: GCCTATCAAGACAGAGGTGCAGGGCGAGGACGGACA...ACTGCGCCCAGCCACATGTGCGTGTTTGTGTATATTGCGTACTGGTGGGGATTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000306433.9
ENST00000397802.8
CDS-3UTR GCA 90 bp ACCAGGGAAAACCCCAGCCCTACTGTCAAGACAAGAGGAGAAGCTGTTCCTCCAAGCACCAGCAGAAGCTaGAGTCCACACGCTTCCTGC +
Preference number: 4 (lower is better)
Translates to: TRENPSPTVKTRGEAVPPSTSRS*SPHASC
Trigger: GCAGGAAGCGTGTGGACTGCAGCTTCTGCTGGTGCT...TGGAGGAACAGCTTCTCCTCTTGTCTTGACAGTAGGGCTGGGGTTTTCCCTGGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000306433.9
ENST00000397802.8
CDS-3UTR GCA 90 bp GAAGTTGTGCCATCAGCGTCTAACAGCCACACACGCTGCCGCATGAGACCTTTTAGCACCAGCAGAAGCTaGAGTCCACACGCTTCCTGC +
Preference number: 4 (lower is better)
Translates to: EVVPSASNSHTRCRMRPFSTSRS*SPHASC
Trigger: GCAGGAAGCGTGTGGACTGCAGCTTCTGCTGGTGCT...AAAAGGTCTCATGCGGCAGCGTGTGTGGCTGTTAGACGCTGATGGCACAACTTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000306433.9
ENST00000397802.8
CDS-3UTR GCA 90 bp GGCTTTTGTAGGGTGCTGGGAGGGGTCTCTGACTTCTTCCTTTCTATTACCTGCAGTCAGCCTCACAGCTaGTGGCTGGGCAGGTTGAGG +
Preference number: 4 (lower is better)
Translates to: GFCRVLGGVSDFFLSITCSQPHS*WLGRLR
Trigger: CCTCAACCTGCCCAGCCAGCAGCTGTGAGGCTGACT...GCAGGTAATAGAAAGGAAGAAGTCAGAGACCCCTCCCAGCACCCTACAAAAGCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000306433.9
ENST00000397802.8
CDS-3UTR GCA 90 bp GAAGCCGGCCCCTTCACACAGACCCTCCCCATCTACCCTTGGAGGATGCATCAGGAGACCTGCTGGCCGTaGATCAGCTATTTAAAGGAA +
Preference number: 4 (lower is better)
Translates to: EAGPFTQTLPIYPWRMHQETCWP*ISYLKE
Trigger: TTCCTTTAAATAGCTGATGCACGGCCAGCAGGTCTC...CTGATGCATCCTCCAAGGGTAGATGGGGAGGGTCTGTGTGAAGGGGCCGGCTTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000306433.9
ENST00000397802.8
CDS-3UTR GCA 90 bp GCCCCTGCAACCCAGCAGGCACCAAGAGAAGCCGGCCCCTTCACACAGACCCTCAAGCATATACACAGATaGAGGGAGCAACAAATTTGC +
Preference number: 4 (lower is better)
Translates to: APATQQAPREAGPFTQTLKHIHR*REQQIC
Trigger: GCAAATTTGTTGCTCCCTGCATCTGTGTATATGCTT...GAGGGTCTGTGTGAAGGGGCCGGCTTCTCTTGGTGCCTGCTGGGTTGCAGGGGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000306433.9
ENST00000397802.8
CDS-3UTR GCA 90 bp CCTGCAACCCAGCAGGCACCAAGAGAAGCCGGCCCCTTCACACAGACCCTCCCCTACAATGAAATCATGTaGTTTGCAGCCACATGGATG +
Preference number: 4 (lower is better)
Translates to: PATQQAPREAGPFTQTLPYNEIM*FAATWM
Trigger: CATCCATGTGGCTGCAAAGCACATGATTTCATTGTA...GGGGAGGGTCTGTGTGAAGGGGCCGGCTTCTCTTGGTGCCTGCTGGGTTGCAGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000306433.9
ENST00000397802.8
CDS-3UTR CCA 90 bp GCCCCTGCAACCCAGCAGGCACCAAGAGAAGCCGGCCCCTTCACACAGACCCTCCCAGAAAGGGTGATATaGTCACCAAATATTCAGTCA +
Preference number: 4 (lower is better)
Translates to: APATQQAPREAGPFTQTLPERVI*SPNIQS
Trigger: TGACTGAATATTTGGTGACCATATCACCCTTTCTGG...GAGGGTCTGTGTGAAGGGGCCGGCTTCTCTTGGTGCCTGCTGGGTTGCAGGGGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000306433.9
ENST00000397802.8
CDS-3UTR CCA 90 bp AGCCGGCCCCTTCACACAGACCCTCCCCATCTACCCTTGGAGGATGCATCAGTGTGTCCACTCTGGCTGTaGACACCATCATTTGCAGAA +
Preference number: 4 (lower is better)
Translates to: SRPLHTDPPHLPLEDASVCPLWL*TPSFAE
Trigger: TTCTGCAAATGATGGTGTCCACAGCCAGAGTGGACA...CACTGATGCATCCTCCAAGGGTAGATGGGGAGGGTCTGTGTGAAGGGGCCGGCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000306433.9
ENST00000397802.8
3UTR CAA 72 bp AGCTGGGACCGAGTGCTTAAGTCTCAGACTCAATCCTaGCTCTCTCTCCTATACTGCCTCCAGGAGGACGGG +
Preference number: 4 (lower is better)
Translates to: SWDRVLKSQTQS*LSLLYCLQEDG
Trigger: CCCGTCCTCCTGGAGGCAGTATAGGAGAGAGAGCAAGGATTGAGTCTGAGACTTAAGCACTCGGTCCCAGCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000306433.9
ENST00000397802.8
CDS-3UTR TCA 90 bp GCCCCTGCAACCCAGCAGGCACCAAGAGAAGCCGGCCCCTTCACACAGACCCTCTTTGTTAGCAATATATaGCTTCGGCTCATACATGAG +
Preference number: 4 (lower is better)
Translates to: APATQQAPREAGPFTQTLFVSNI*LRLIHE
Trigger: CTCATGTATGAGCCGAAGTCATATATTGCTAACAAA...GAGGGTCTGTGTGAAGGGGCCGGCTTCTCTTGGTGCCTGCTGGGTTGCAGGGGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000306433.9
ENST00000397802.8
CDS-3UTR GCA 90 bp CAATCCCCACCAGTACGCAATATACACAAACACGCACATGTGGCTGGGCGCAGTTTGCCCAAGAGGAGTTaGACCCTTCCAGACTTGCGG +
Preference number: 4 (lower is better)
Translates to: QSPPVRNIHKHAHVAGRSLPKRS*TLPDLR
Trigger: CCGCAAGTCTGGAAGGGTGCAACTCCTCTTGGGCAA...ACTGCGCCCAGCCACATGTGCGTGTTTGTGTATATTGCGTACTGGTGGGGATTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000306433.9
ENST00000397802.8
CDS-3UTR GCA 90 bp ACACGCTGCCGCATGAGACCTTTTTCTAACCTGCAAACGTCTCCCCAGCTGAACTTGCCCAAGAGGAGTTaGACCCTTCCAGACTTGCGG +
Preference number: 4 (lower is better)
Translates to: TRCRMRPFSNLQTSPQLNLPKRS*TLPDLR
Trigger: CCGCAAGTCTGGAAGGGTGCAACTCCTCTTGGGCAA...GTTCAGCTGGGGAGACGTTTGCAGGTTAGAAAAAGGTCTCATGCGGCAGCGTGT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000306433.9
ENST00000397802.8
CDS-3UTR GCA 90 bp GGAGGCTCAGAAAGGTTAGGTAGTTTGTCCAAGGACACAGAACCAGGAACTGGCGTGCCATCTCCACGCTaGAGGAAGGTCACTGTGCCA +
Preference number: 4 (lower is better)
Translates to: GGSERLGSLSKDTEPGTGVPSPR*RKVTVP
Trigger: TGGCACAGTGACCTTCCTGCAGCGTGGAGATGGCAC...GCCAGTTCCTGGTTCTGTGTCCTTGGACAAACTACCTAACCTTTCTGAGCCTCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000306433.9
ENST00000397802.8
CDS-3UTR GCA 90 bp ACCAGGGAAAACCCCAGCCCTACTGTCAAGACAAGAGGAGAAGCTGTTCCTCCAGCTCAAGGGCAAGTGTaGTCAGTGCCAGGGGATACA +
Preference number: 4 (lower is better)
Translates to: TRENPSPTVKTRGEAVPPAQGQV*SVPGDT
Trigger: TGTATCCCCTGGCACTGAGCACACTTGCCCTTGAGC...TGGAGGAACAGCTTCTCCTCTTGTCTTGACAGTAGGGCTGGGGTTTTCCCTGGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000306433.9
ENST00000397802.8
CDS-3UTR GCA 90 bp AGCCGGCCCCTTCACACAGACCCTCCCCATCTACCCTTGGAGGATGCATCAGTGGGGCAAGGGTTGAAATaGTACCTGAGTACAATGTTC +
Preference number: 4 (lower is better)
Translates to: SRPLHTDPPHLPLEDASVGQGLK*YLSTMF
Trigger: GAACATTGTACTCAGGTAGCATTTCAACCCTTGCCC...CACTGATGCATCCTCCAAGGGTAGATGGGGAGGGTCTGTGTGAAGGGGCCGGCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000306433.9
ENST00000397802.8
CDS-3UTR CCA 90 bp ATAGAACAATCTGACACCATAAATTTAGGGCATCAGGCCCAGGGTGAGGACGGGAGACTGGATCACTTCTaGACGGCCTCGCCCTCGTCC +
Preference number: 4 (lower is better)
Translates to: IEQSDTINLGHQAQGEDGRLDHF*TASPSS
Trigger: GGACGAGGGCGAGGCCGTCCAGAAGTGATCCAGTCT...CCCGTCCTCACCCTGGGCCTGATGCCCTAAATTTATGGTGTCAGATTGTTCTAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000306433.9
ENST00000397802.8
CDS-3UTR CCA 90 bp CCAGGGGATACACTAGTCGACCCATCCCCCTTTGCCAGGGCCTGGTCCAAGAGTCATTCTCTGCCAATTTaGCTTCTCGGTCTTTCTCCT +
Preference number: 4 (lower is better)
Translates to: PGDTLVDPSPFARAWSKSHSLPI*LLGLSP
Trigger: AGGAGAAAGACCGAGAAGCCAAATTGGCAGAGAATG...ACTCTTGGACCAGGCCCTGGCAAAGGGGGATGGGTCGACTAGTGTATCCCCTGG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000306433.9
ENST00000397802.8
CDS-3UTR CCA 90 bp AGCCGGCCCCTTCACACAGACCCTCCCCATCTACCCTTGGAGGATGCATCAGTGCCAAAGTTTTTGAAGTaGGCATCATCGGCCAAGTGT +
Preference number: 4 (lower is better)
Translates to: SRPLHTDPPHLPLEDASVPKFLK*ASSAKC
Trigger: ACACTTGGCCGATGATGCCCACTTCAAAAACTTTGG...CACTGATGCATCCTCCAAGGGTAGATGGGGAGGGTCTGTGTGAAGGGGCCGGCT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000306433.9
ENST00000397802.8
CDS-3UTR CCA 90 bp AAGCCGGCCCCTTCACACAGACCCTCCCCATCTACCCTTGGAGGATGCATCAGTAGAATGGAGACCTGCTaGCCGTGCATCAGCTATTTA +
Preference number: 4 (lower is better)
Translates to: KPAPSHRPSPSTLGGCISRMETC*PCISYL
Trigger: TAAATAGCTGATGCACGGCCAGCAGGTCTCCATTCT...ACTGATGCATCCTCCAAGGGTAGATGGGGAGGGTCTGTGTGAAGGGGCCGGCTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000306433.9
ENST00000397802.8
CDS-3UTR CCA 90 bp CCTGCAACCCAGCAGGCACCAAGAGAAGCCGGCCCCTTCACACAGACCCTCCCCTTCCTCAAACTTTCTTaGAAGGGTCAGAAAACAGAA +
Preference number: 4 (lower is better)
Translates to: PATQQAPREAGPFTQTLPFLKLS*KGQKTE
Trigger: TTCTGTTTTCTGACCCTTCCAAGAAAGTTTGAGGAA...GGGGAGGGTCTGTGTGAAGGGGCCGGCTTCTCTTGGTGCCTGCTGGGTTGCAGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000306433.9
ENST00000397802.8
CDS-3UTR CCA 90 bp TGCAACCCAGCAGGCACCAAGAGAAGCCGGCCCCTTCACACAGACCCTCCCCATTCCAACCAAAGTTACTaGTGGAGTCAGATTCAAACC +
Preference number: 4 (lower is better)
Translates to: CNPAGTKRSRPLHTDPPHSNQSY*WSQIQT
Trigger: GGTTTGAATCTGACTCCACCAGTAACTTTGGTTGGA...ATGGGGAGGGTCTGTGTGAAGGGGCCGGCTTCTCTTGGTGCCTGCTGGGTTGCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000306433.9
ENST00000397802.8
CDS-3UTR TCA 90 bp ACACGCTGCCGCATGAGACCTTTTTCTAACCTGCAAACGTCTCCCCAGCTGAACACACACGCTGCCGCATaGGACCTTTTTCTAACCTGC +
Preference number: 4 (lower is better)
Translates to: TRCRMRPFSNLQTSPQLNTHAAA*DLFLTC
Trigger: GCAGGTTAGAAAAAGGTCTCATGCGGCAGCGTGTGT...GTTCAGCTGGGGAGACGTTTGCAGGTTAGAAAAAGGTCTCATGCGGCAGCGTGT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENST00000306433.9
ENST00000397802.8
CDS-3UTR TCA 90 bp GTTGTGCCATCAGCGTCTAACAGCCACACACGCTGCCGCATGAGACCTTTTTCTATTCAAACCCAACCGTaGCTCGACAGCCTGGACTCT +
Preference number: 4 (lower is better)
Translates to: VVPSASNSHTRCRMRPFSIQTQP*LDSLDS
Trigger: AGAGTCCAGGCTGTCGAGTCACGGTTGGGTTTGAAT...AGAAAAAGGTCTCATGCGGCAGCGTGTGTGGCTGTTAGACGCTGATGGCACAAC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000306433.9
ENST00000397802.8
CDS-3UTR GCA 90 bp GAACCTGGGAGACAGAGTTGCAGTAAGCCAAGATCACACCACTGGGCGACAGAGTCTCGGTCTTTCTCCTaGTTGATGAGCACCACCTGT +
Preference number: 4 (lower is better)
Translates to: EPGRQSCSKPRSHHWATESRSFS*LMSTTC
Trigger: ACAGGTGGTGCTCATCAAGCAGGAGAAAGACCGAGA...CTCTGTCGCCCAGTGGTGTGATCTTGGCTTACTGCAACTCTGTCTCCCAGGTTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000306433.9
ENST00000397802.8
CDS-3UTR GCA 90 bp ACACGCTGCCGCATGAGACCTTTTTCTAACCTGCAAACGTCTCCCCAGCTGAACCTGCAAAGGAAAGAGTaGAGGGAACATGTCCTGGGC +
Preference number: 4 (lower is better)
Translates to: TRCRMRPFSNLQTSPQLNLQRKE*REHVLG
Trigger: GCCCAGGACATGTTCCCTGCACTCTTTCCTTTGCAG...GTTCAGCTGGGGAGACGTTTGCAGGTTAGAAAAAGGTCTCATGCGGCAGCGTGT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000306433.9
ENST00000397802.8
CDS-3UTR GCA 90 bp ACACGCTGCCGCATGAGACCTTTTTCTAACCTGCAAACGTCTCCCCAGCTGAACCTTGGTAGAAATGCATaGCTCAGGGGCCTGACCAAG +
Preference number: 4 (lower is better)
Translates to: TRCRMRPFSNLQTSPQLNLGRNA*LRGLTK
Trigger: CTTGGTCAGGCCCCTGAGGCATGCATTTCTACCAAG...GTTCAGCTGGGGAGACGTTTGCAGGTTAGAAAAAGGTCTCATGCGGCAGCGTGT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000306433.9
ENST00000397802.8
CDS-3UTR GCA 90 bp CCAGGGGATACACTAGTCGACCCATCCCCCTTTGCCAGGGCCTGGTCCAAGAGTAGGGAGCAACAAATTTaGATCCACTTGCACTCATGT +
Preference number: 4 (lower is better)
Translates to: PGDTLVDPSPFARAWSKSREQQI*IHLHSC
Trigger: ACATGAGTGCAAGTGGATGCAAATTTGTTGCTCCCT...ACTCTTGGACCAGGCCCTGGCAAAGGGGGATGGGTCGACTAGTGTATCCCCTGG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000306433.9
ENST00000397802.8
CDS-3UTR GCA 90 bp TGCAGTCCACACGCTTCCTGCCCCTGCAACCCAGCAGGCACCAAGAGAAGCCGGGTAGTTAGAAAAGTGTaGAAGCCTATTGTTCCTTCT +
Preference number: 4 (lower is better)
Translates to: CSPHASCPCNPAGTKRSRVVRKV*KPIVPS
Trigger: AGAAGGAACAATAGGCTTGCACACTTTTCTAACTAC...CCGGCTTCTCTTGGTGCCTGCTGGGTTGCAGGGGCAGGAAGCGTGTGGACTGCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000306433.9
ENST00000397802.8
CDS-3UTR GCA 90 bp GCCGGCCCCTTCACACAGACCCTCCCCATCTACCCTTGGAGGATGCATCAGTGGTACAATGAAATCATGTaGTTTGCAGCCACATGGATG +
Preference number: 4 (lower is better)
Translates to: AGPFTQTLPIYPWRMHQWYNEIM*FAATWM
Trigger: CATCCATGTGGCTGCAAAGCACATGATTTCATTGTA...CCACTGATGCATCCTCCAAGGGTAGATGGGGAGGGTCTGTGTGAAGGGGCCGGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000306433.9
ENST00000397802.8
CDS-3UTR CCA 90 bp CGGCCAAGTGTCAAAGAGGCCATTATTCAATACATCCCTAACTTCTCTTATGAAGGTCCCTGGAACGGATaGAGGGAAGGCGGCCGGGGG +
Preference number: 4 (lower is better)
Translates to: RPSVKEAIIQYIPNFSYEGPWNG*REGGRG
Trigger: CCCCCGGCCGCCTTCCCTCCATCCGTTCCAGGGACC...TTCATAAGAGAAGTTAGGGATGTATTGAATAATGGCCTCTTTGACACTTGGCCG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000306433.9
ENST00000397802.8
CDS-3UTR CCA 90 bp ATAGAACAATCTGACACCATAAATTTAGGGCATCAGGCCCAGGGTGAGGACGGGCACACAGGAGGCACCTaGCTAACAGGAGCCAGGAGA +
Preference number: 4 (lower is better)
Translates to: IEQSDTINLGHQAQGEDGHTGGT*LTGARR
Trigger: TCTCCTGGCTCCTGTTAGCCAGGTGCCTCCTGTGTG...CCCGTCCTCACCCTGGGCCTGATGCCCTAAATTTATGGTGTCAGATTGTTCTAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000306433.9
ENST00000397802.8
CDS-3UTR CCA 90 bp TGCAGTCCACACGCTTCCTGCCCCTGCAACCCAGCAGGCACCAAGAGAAGCCGGTTCCTCAAACTTTCTTaGAAGGGTCAGAAAACAGAA +
Preference number: 4 (lower is better)
Translates to: CSPHASCPCNPAGTKRSRFLKLS*KGQKTE
Trigger: TTCTGTTTTCTGACCCTTCCAAGAAAGTTTGAGGAA...CCGGCTTCTCTTGGTGCCTGCTGGGTTGCAGGGGCAGGAAGCGTGTGGACTGCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000306433.9
ENST00000397802.8
CDS-3UTR CCA 90 bp ACACGCTGCCGCATGAGACCTTTTTCTAACCTGCAAACGTCTCCCCAGCTGAACCCAAGAGTGGGCACGTaGCCCCACTCTATAAAGAGA +
Preference number: 4 (lower is better)
Translates to: TRCRMRPFSNLQTSPQLNPRVGT*PHSIKR
Trigger: TCTCTTTATAGAGTGGGGCCACGTGCCCACTCTTGG...GTTCAGCTGGGGAGACGTTTGCAGGTTAGAAAAAGGTCTCATGCGGCAGCGTGT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000306433.9
ENST00000397802.8
CDS-3UTR CCA 90 bp TGCAGTCCACACGCTTCCTGCCCCTGCAACCCAGCAGGCACCAAGAGAAGCCGGACATACTCATTAACATaGAAGAACTGGATGTGTGTG +
Preference number: 4 (lower is better)
Translates to: CSPHASCPCNPAGTKRSRTYSLT*KNWMCV
Trigger: CACACACATCCAGTTCTTCCATGTTAATGAGTATGT...CCGGCTTCTCTTGGTGCCTGCTGGGTTGCAGGGGCAGGAAGCGTGTGGACTGCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000306433.9
ENST00000397802.8
3UTR CAA 72 bp CCTCACGCCAACCCTGGAGGTAGGTATCATCCCCATTaGTGTCGGATGAGGTATAGGAGGCTCAGAAAGGTT +
Preference number: 4 (lower is better)
Translates to: PHANPGGRYHPH*CRMRYRRLRKV
Trigger: AACCTTTCTGAGCCTCCTATACCTCATCCGACACAAATGGGGATGATACCTACCTCCAGGGTTGGCGTGAGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000306433.9
ENST00000397802.8
CDS-3UTR TCA 90 bp GAACCTGGGAGACAGAGTTGCAGTAAGCCAAGATCACACCACTGGGCGACAGAGTGGCAGCAGCTACTATaGATTGTCTATCCAACTGCC +
Preference number: 4 (lower is better)
Translates to: EPGRQSCSKPRSHHWATEWQQLL*IVYPTA
Trigger: GGCAGTTGGATAGACAATTCATAGTAGCTGCTGCCA...CTCTGTCGCCCAGTGGTGTGATCTTGGCTTACTGCAACTCTGTCTCCCAGGTTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000306433.9
ENST00000397802.8
CDS-3UTR GCA 90 bp CGGTTCTTCCTGAGCCCCTATGGTTCATACTGTCCCAGAGGCCAGGTGCCACGATACATGAGTACTAACTaGAAAGGAAAGAGTGCAGGG +
Preference number: 4 (lower is better)
Translates to: RFFLSPYGSYCPRGQVPRYMSTN*KGKSAG
Trigger: CCCTGCACTCTTTCCTTTGCAGTTAGTACTCATGTA...TCGTGGCACCTGGCCTCTGGGACAGTATGAACCATAGGGGCTCAGGAAGAACCG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000306433.9
ENST00000397802.8
CDS-3UTR GCA 90 bp GAACCTGGGAGACAGAGTTGCAGTAAGCCAAGATCACACCACTGGGCGACAGAGGAGACCTGCTGGCCGTaGATCAGCTATTTAAAGGAA +
Preference number: 4 (lower is better)
Translates to: EPGRQSCSKPRSHHWATEETCWP*ISYLKE
Trigger: TTCCTTTAAATAGCTGATGCACGGCCAGCAGGTCTC...CTCTGTCGCCCAGTGGTGTGATCTTGGCTTACTGCAACTCTGTCTCCCAGGTTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000306433.9
ENST00000397802.8
CDS-3UTR GCA 90 bp ACCAGGGAAAACCCCAGCCCTACTGTCAAGACAAGAGGAGAAGCTGTTCCTCCAATGAGAATGGAGACCTaGTGGCCGTGCATCAGCTAT +
Preference number: 4 (lower is better)
Translates to: TRENPSPTVKTRGEAVPPMRMET*WPCISY
Trigger: ATAGCTGATGCACGGCCAGCAGGTCTCCATTCTCAT...TGGAGGAACAGCTTCTCCTCTTGTCTTGACAGTAGGGCTGGGGTTTTCCCTGGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000306433.9
ENST00000397802.8
CDS-3UTR CCA 90 bp GAAGTTGTGCCATCAGCGTCTAACAGCCACACACGCTGCCGCATGAGACCTTTTAGTGCCTGCTGGTTCTaGCCTTGTGCAGTTTTCATC +
Preference number: 4 (lower is better)
Translates to: EVVPSASNSHTRCRMRPFSACWF*PCAVFI
Trigger: GATGAAAACTGCACAAGGCCAGAACCAGCAGGCACT...AAAAGGTCTCATGCGGCAGCGTGTGTGGCTGTTAGACGCTGATGGCACAACTTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000306433.9
ENST00000397802.8
CDS-3UTR CCA 90 bp GAACCTGGGAGACAGAGTTGCAGTAAGCCAAGATCACACCACTGGGCGACAGAGTTATTGAGTGCCTGCTaGTTCTGGCCTTGTGCAGTT +
Preference number: 4 (lower is better)
Translates to: EPGRQSCSKPRSHHWATELLSAC*FWPCAV
Trigger: AACTGCACAAGGCCAGAACCAGCAGGCACTCAATAA...CTCTGTCGCCCAGTGGTGTGATCTTGGCTTACTGCAACTCTGTCTCCCAGGTTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000306433.9
ENST00000397802.8
CDS-3UTR CCA 90 bp GGTATGACAGAAGCCCAATCCCCACCAGTACGCAATATACACAAACACGCACATGCAGGGAACATGTCCTaGGCCCAACATGTCCCCCAA +
Preference number: 4 (lower is better)
Translates to: GMTEAQSPPVRNIHKHAHAGNMS*AQHVPQ
Trigger: TTGGGGGACATGTTGGGCCCAGGACATGTTCCCTGC...ATGTGCGTGTTTGTGTATATTGCGTACTGGTGGGGATTGGGCTTCTGTCATACC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000306433.9
ENST00000397802.8
CDS-3UTR CCA 90 bp AAGCCGGCCCCTTCACACAGACCCTCCCCATCTACCCTTGGAGGATGCATCAGTTCCAACCAAAGTTACTaGTGGAGTCAGATTCAAACC +
Preference number: 4 (lower is better)
Translates to: KPAPSHRPSPSTLGGCISSNQSY*WSQIQT
Trigger: GGTTTGAATCTGACTCCACCAGTAACTTTGGTTGGA...ACTGATGCATCCTCCAAGGGTAGATGGGGAGGGTCTGTGTGAAGGGGCCGGCTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000306433.9
ENST00000397802.8
CDS-3UTR CCA 90 bp CGGCCAAGTGTCAAAGAGGCCATTATTCAATACATCCCTAACTTCTCTTATGAATCCTCCCCTCCCACGTaGCGAGACTCCCGGGACCAC +
Preference number: 4 (lower is better)
Translates to: RPSVKEAIIQYIPNFSYESSPPT*RDSRDH
Trigger: GTGGTCCCGGGAGTCTCGCCACGTGGGAGGGGAGGA...TTCATAAGAGAAGTTAGGGATGTATTGAATAATGGCCTCTTTGACACTTGGCCG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000397802.8
CDS-3UTR TCA 90 bp GTTGTGCCATCAGCGTCTAACAGCCACACACGCTGCCGCATGAGACCTTTTTCTGAAACCCAAAGTTTTTaGAGTGGGCATCATCGGCCA +
Preference number: 4 (lower is better)
Translates to: VVPSASNSHTRCRMRPFSETQSF*SGHHRP
Trigger: TGGCCGATGATGCCCACTTCAAAAACTTTGGGTTTC...AGAAAAAGGTCTCATGCGGCAGCGTGTGTGGCTGTTAGACGCTGATGGCACAAC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000306433.9
ENST00000397802.8
CDS-3UTR TCA 90 bp ATAGAACAATCTGACACCATAAATTTAGGGCATCAGGCCCAGGGTGAGGACGGGGGAAGCGGTTCTTCCTaGGCCCCTATGGTTCATACT +
Preference number: 4 (lower is better)
Translates to: IEQSDTINLGHQAQGEDGGSGSS*APMVHT
Trigger: AGTATGAACCATAGGGGCTCAGGAAGAACCGCTTCC...CCCGTCCTCACCCTGGGCCTGATGCCCTAAATTTATGGTGTCAGATTGTTCTAT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000306433.9
ENST00000397802.8
CDS-3UTR TCA 90 bp GGCTTTTGTAGGGTGCTGGGAGGGGTCTCTGACTTCTTCCTTTCTATTACCTGCGGAGAAGCCCAGCCTTaGCAAATGAGTAACAGGCTT +
Preference number: 4 (lower is better)
Translates to: GFCRVLGGVSDFFLSITCGEAQP*QMSNRL
Trigger: AAGCCTGTTACTCATTTGTCAAGGCTGGGCTTCTCC...GCAGGTAATAGAAAGGAAGAAGTCAGAGACCCCTCCCAGCACCCTACAAAAGCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000306433.9
ENST00000397802.8
CDS-3UTR TCA 90 bp ACCAGGGAAAACCCCAGCCCTACTGTCAAGACAAGAGGAGAAGCTGTTCCTCCATCAAGCCAAGACATCTaGATGGGCGAAATGAACGTG +
Preference number: 4 (lower is better)
Translates to: TRENPSPTVKTRGEAVPPSSQDI*MGEMNV
Trigger: CACGTTCATTTCGCCCATTCAGATGTCTTGGCTTGA...TGGAGGAACAGCTTCTCCTCTTGTCTTGACAGTAGGGCTGGGGTTTTCCCTGGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000306433.9
ENST00000397802.8
CDS-3UTR TCA 90 bp GAAGTTGTGCCATCAGCGTCTAACAGCCACACACGCTGCCGCATGAGACCTTTTTGGCAGCAGCTACTATaGATTGTCTATCCAACTGCC +
Preference number: 4 (lower is better)
Translates to: EVVPSASNSHTRCRMRPFWQQLL*IVYPTA
Trigger: GGCAGTTGGATAGACAATTCATAGTAGCTGCTGCCA...AAAAGGTCTCATGCGGCAGCGTGTGTGGCTGTTAGACGCTGATGGCACAACTTC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000306433.9
ENST00000397802.8
CDS-3UTR GCA 90 bp GAACCTGGGAGACAGAGTTGCAGTAAGCCAAGATCACACCACTGGGCGACAGAGGAACATACAAGTTTGTaGTTCACGTGTCCCAGGACT +
Preference number: 4 (lower is better)
Translates to: EPGRQSCSKPRSHHWATEEHTSL*FTCPRT
Trigger: AGTCCTGGGACACGTGAAGCACAAACTTGTATGTTC...CTCTGTCGCCCAGTGGTGTGATCTTGGCTTACTGCAACTCTGTCTCCCAGGTTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000306433.9
ENST00000397802.8
CDS-3UTR GCA 90 bp ATAGAACAATCTGACACCATAAATTTAGGGCATCAGGCCCAGGGTGAGGACGGGAAGGCTTTTGTAGGGTaGTGGGAGGGGTCTCTGACT +
Preference number: 4 (lower is better)
Translates to: IEQSDTINLGHQAQGEDGKAFVG*WEGSLT
Trigger: AGTCAGAGACCCCTCCCAGCACCCTACAAAAGCCTT...CCCGTCCTCACCCTGGGCCTGATGCCCTAAATTTATGGTGTCAGATTGTTCTAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000306433.9
ENST00000397802.8
CDS-3UTR CCA 90 bp GAACCTGGGAGACAGAGTTGCAGTAAGCCAAGATCACACCACTGGGCGACAGAGCATTCTCTGCCAATTTaGCTTCTCGGTCTTTCTCCT +
Preference number: 4 (lower is better)
Translates to: EPGRQSCSKPRSHHWATEHSLPI*LLGLSP
Trigger: AGGAGAAAGACCGAGAAGCCAAATTGGCAGAGAATG...CTCTGTCGCCCAGTGGTGTGATCTTGGCTTACTGCAACTCTGTCTCCCAGGTTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000306433.9
ENST00000397802.8
CDS-3UTR CCA 90 bp ACCCTCCCCATCTACCCTTGGAGGATGCATCAGTGGAAGAGATTAAGACATAAAAAAGGCTGGAGTGAGTaGGCTCAGTGGGCCCCTTCT +
Preference number: 4 (lower is better)
Translates to: TLPIYPWRMHQWKRLRHKKGWSE*AQWAPS
Trigger: AGAAGGGGCCCACTGAGCCCACTCACTCCAGCCTTT...TTTATGTCTTAATCTCTTCCACTGATGCATCCTCCAAGGGTAGATGGGGAGGGT
51% GC, longest homopolymer 6 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENST00000306433.9
ENST00000397802.8
ENST00000518039.1
CDS-3UTR CCA 90 bp CAATCCCCACCAGTACGCAATATACACAAACACGCACATGTGGCTGGGCGCAGTAGAATGGAGACCTGCTaGCCGTGCATCAGCTATTTA +
Preference number: 4 (lower is better)
Translates to: QSPPVRNIHKHAHVAGRSRMETC*PCISYL
Trigger: TAAATAGCTGATGCACGGCCAGCAGGTCTCCATTCT...ACTGCGCCCAGCCACATGTGCGTGTTTGTGTATATTGCGTACTGGTGGGGATTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000306433.9
ENST00000397802.8
CDS-3UTR CCA 90 bp TGCAACCCAGCAGGCACCAAGAGAAGCCGGCCCCTTCACACAGACCCTCCCCATACAATGTTCACTATTTaGGTGATAGGTATGACAGAA +
Preference number: 4 (lower is better)
Translates to: CNPAGTKRSRPLHTDPPHTMFTI*VIGMTE
Trigger: TTCTGTCATACCTATCACCCAAATAGTGAACATTGT...ATGGGGAGGGTCTGTGTGAAGGGGCCGGCTTCTCTTGGTGCCTGCTGGGTTGCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000306433.9
ENST00000397802.8
CDS-3UTR CCA 90 bp GGCTTTTGTAGGGTGCTGGGAGGGGTCTCTGACTTCTTCCTTTCTATTACCTGCGGAAATAGCAAACACTaGGCACTCCAAAAGGGGGTG +
Preference number: 4 (lower is better)
Translates to: GFCRVLGGVSDFFLSITCGNSKH*ALQKGV
Trigger: CACCCCCTTTTGGAGTGCCCAGTGTTTGCTATTTCC...GCAGGTAATAGAAAGGAAGAAGTCAGAGACCCCTCCCAGCACCCTACAAAAGCC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENST00000306433.9
ENST00000397802.8
CDS-3UTR CCA 90 bp GCAACAAATTTGCATCCACTTGCACTCATGTATAAATTTGGCTTTGGGCTCTTCGGTGCGTCCCTCCAGTaGCCTCTCAGCTCCTCCCCT +
Preference number: 4 (lower is better)
Translates to: ATNLHPLALMYKFGFGLFGASLQ*PLSSSP
Trigger: AGGGGAGGAGCTGAGAGGCCACTGGAGGGACGCACC...GAAGAGCCCAAAGCCAAATTTATACATGAGTGCAAGTGGATGCAAATTTGTTGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000397802.8
3UTR CAA 72 bp TGTACTACTGTCCACTCTGGCTGTGGACACCATCATTaGCAGAATGATGCTTGGCGCAGGAGCAGCCATTCT +
Preference number: 4 (lower is better)
Translates to: CTTVHSGCGHHH*QNDAWRRSSHS
Trigger: AGAATGGCTGCTCCTGCGCCAAGCATCATTCTGCAAATGATGGTGTCCACAGCCAGAGTGGACAGTAGTACA
51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000306433.9
ENST00000397802.8
CDS-3UTR TCA 90 bp ATAGAACAATCTGACACCATAAATTTAGGGCATCAGGCCCAGGGTGAGGACGGGAGACGGGCAGGCCTCTaGAACCCAAAGTTTTTGAAG +
Preference number: 4 (lower is better)
Translates to: IEQSDTINLGHQAQGEDGRRAGL*NPKFLK
Trigger: CTTCAAAAACTTTGGGTTTCAGAGGCCTGCCCGTCT...CCCGTCCTCACCCTGGGCCTGATGCCCTAAATTTATGGTGTCAGATTGTTCTAT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000306433.9
ENST00000397802.8
CDS-3UTR GCA 90 bp ACCCTCCCCATCTACCCTTGGAGGATGCATCAGTGGAAGAGATTAAGACATAAATTGCCCAAGAGGAGTTaGACCCTTCCAGACTTGCGG +
Preference number: 4 (lower is better)
Translates to: TLPIYPWRMHQWKRLRHKLPKRS*TLPDLR
Trigger: CCGCAAGTCTGGAAGGGTGCAACTCCTCTTGGGCAA...TTTATGTCTTAATCTCTTCCACTGATGCATCCTCCAAGGGTAGATGGGGAGGGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000306433.9
ENST00000397802.8
ENST00000518039.1
CDS-3UTR CCA 90 bp CACCTCAGCTCCAGAGTAGCTGGGAACGAAGAATTGTATGTATTTCTGAGTGAGAAGCCCTGGGGGACCTaGAACAATGGTTGCCAAAGG +
Preference number: 4 (lower is better)
Translates to: HLSSRVAGNEELYVFLSEKPWGT*NNGCQR
Trigger: CCTTTGGCAACCATTGTTCCAGGTCCCCCAGGGCTT...CTCACTCAGAAATACATACAATTCTTCGTTCCCAGCTACTCTGGAGCTGAGGTG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000306433.9
ENST00000397802.8
CDS-3UTR CCA 90 bp GGTATGACAGAAGCCCAATCCCCACCAGTACGCAATATACACAAACACGCACATCTCCCCATCTACCCTTaGAGGATGCATCAGTGGAAG +
Preference number: 4 (lower is better)
Translates to: GMTEAQSPPVRNIHKHAHLPIYP*RMHQWK
Trigger: CTTCCACTGATGCATCCTCCAAGGGTAGATGGGGAG...ATGTGCGTGTTTGTGTATATTGCGTACTGGTGGGGATTGGGCTTCTGTCATACC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000306433.9
ENST00000397802.8
CDS-3UTR CCA 90 bp GGCTTTTGTAGGGTGCTGGGAGGGGTCTCTGACTTCTTCCTTTCTATTACCTGCTTATTGAGTGCCTGCTaGTTCTGGCCTTGTGCAGTT +
Preference number: 4 (lower is better)
Translates to: GFCRVLGGVSDFFLSITCLLSAC*FWPCAV
Trigger: AACTGCACAAGGCCAGAACCAGCAGGCACTCAATAA...GCAGGTAATAGAAAGGAAGAAGTCAGAGACCCCTCCCAGCACCCTACAAAAGCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000306433.9
ENST00000397802.8
CDS-3UTR CCA 90 bp ACACGCTGCCGCATGAGACCTTTTTCTAACCTGCAAACGTCTCCCCAGCTGAACTACTACTGTCCACTCTaGCTGTGGACACCATCATTT +
Preference number: 4 (lower is better)
Translates to: TRCRMRPFSNLQTSPQLNYYCPL*LWTPSF
Trigger: AAATGATGGTGTCCACAGCCAGAGTGGACAGTAGTA...GTTCAGCTGGGGAGACGTTTGCAGGTTAGAAAAAGGTCTCATGCGGCAGCGTGT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000306433.9
ENST00000397802.8
CDS-3UTR CCA 90 bp CCAGGGGATACACTAGTCGACCCATCCCCCTTTGCCAGGGCCTGGTCCAAGAGTACAATGTTCACTATTTaGGTGATAGGTATGACAGAA +
Preference number: 4 (lower is better)
Translates to: PGDTLVDPSPFARAWSKSTMFTI*VIGMTE
Trigger: TTCTGTCATACCTATCACCCAAATAGTGAACATTGT...ACTCTTGGACCAGGCCCTGGCAAAGGGGGATGGGTCGACTAGTGTATCCCCTGG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000306433.9
ENST00000397802.8
CDS-3UTR TCA 90 bp GGTATGACAGAAGCCCAATCCCCACCAGTACGCAATATACACAAACACGCACATGGAGAAGCCCAGCCTTaGCAAATGAGTAACAGGCTT +
Preference number: 4 (lower is better)
Translates to: GMTEAQSPPVRNIHKHAHGEAQP*QMSNRL
Trigger: AAGCCTGTTACTCATTTGTCAAGGCTGGGCTTCTCC...ATGTGCGTGTTTGTGTATATTGCGTACTGGTGGGGATTGGGCTTCTGTCATACC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000306433.9
ENST00000397802.8
CDS-3UTR TCA 90 bp ACCCTCCCCATCTACCCTTGGAGGATGCATCAGTGGAAGAGATTAAGACATAAAACTGTCCAATGGAGCTaGCATGAGCTTCAGCACCAG +
Preference number: 4 (lower is better)
Translates to: TLPIYPWRMHQWKRLRHKTVQWS*HELQHQ
Trigger: CTGGTGCTGAAGCTCATGTCAGCTCCATTGGACAGT...TTTATGTCTTAATCTCTTCCACTGATGCATCCTCCAAGGGTAGATGGGGAGGGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000306433.9
ENST00000397802.8
CDS-3UTR TCA 90 bp CGGCCAAGTGTCAAAGAGGCCATTATTCAATACATCCCTAACTTCTCTTATGAACATGCCTCAGGGGCCTaGCCAAGAAGGTGGACTCTC +
Preference number: 4 (lower is better)
Translates to: RPSVKEAIIQYIPNFSYEHASGA*PRRWTL
Trigger: GAGAGTCCACCTTCTTGGTCAGGCCCCTGAGGCATG...TTCATAAGAGAAGTTAGGGATGTATTGAATAATGGCCTCTTTGACACTTGGCCG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000306433.9
ENST00000397802.8
CDS-3UTR TCA 90 bp CACCTCAGCTCCAGAGTAGCTGGGAACGAAGAATTGTATGTATTTCTGAGTGAGATTCAAACCCAACCGTaGCTCGACAGCCTGGACTCT +
Preference number: 4 (lower is better)
Translates to: HLSSRVAGNEELYVFLSEIQTQP*LDSLDS
Trigger: AGAGTCCAGGCTGTCGAGTCACGGTTGGGTTTGAAT...CTCACTCAGAAATACATACAATTCTTCGTTCCCAGCTACTCTGGAGCTGAGGTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000306433.9
ENST00000397802.8
CDS-3UTR GCA 90 bp GGTATGACAGAAGCCCAATCCCCACCAGTACGCAATATACACAAACACGCACATTCTCGGTCTTTCTCCTaGTTGATGAGCACCACCTGT +
Preference number: 4 (lower is better)
Translates to: GMTEAQSPPVRNIHKHAHSRSFS*LMSTTC
Trigger: ACAGGTGGTGCTCATCAAGCAGGAGAAAGACCGAGA...ATGTGCGTGTTTGTGTATATTGCGTACTGGTGGGGATTGGGCTTCTGTCATACC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000306433.9
ENST00000397802.8
CDS-3UTR GCA 90 bp ACACGCTGCCGCATGAGACCTTTTTCTAACCTGCAAACGTCTCCCCAGCTGAACTACATGAGTACTAACTaGAAAGGAAAGAGTGCAGGG +
Preference number: 4 (lower is better)
Translates to: TRCRMRPFSNLQTSPQLNYMSTN*KGKSAG
Trigger: CCCTGCACTCTTTCCTTTGCAGTTAGTACTCATGTA...GTTCAGCTGGGGAGACGTTTGCAGGTTAGAAAAAGGTCTCATGCGGCAGCGTGT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000306433.9
ENST00000397802.8
CDS-3UTR GCA 90 bp CGGCCAAGTGTCAAAGAGGCCATTATTCAATACATCCCTAACTTCTCTTATGAAAGTCAGCCTCACAGCTaGTGGCTGGGCAGGTTGAGG +
Preference number: 4 (lower is better)
Translates to: RPSVKEAIIQYIPNFSYESQPHS*WLGRLR
Trigger: CCTCAACCTGCCCAGCCAGCAGCTGTGAGGCTGACT...TTCATAAGAGAAGTTAGGGATGTATTGAATAATGGCCTCTTTGACACTTGGCCG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000306433.9
ENST00000397802.8
CDS-3UTR CCA 90 bp GAGTCAGATTCAAACCCAACCGTGACTCGACAGCCTGGACTCTGCCACTTAAACAAAGGAAGAAAGGGCTaGAGCCCAGAGTTAACCAAA +
Preference number: 4 (lower is better)
Translates to: ESDSNPTVTRQPGLCHLNKGRKG*SPELTK
Trigger: TTTGGTTAACTCTGGGCTCCAGCCCTTTCTTCCTTT...GTTTAAGTGGCAGAGTCCAGGCTGTCGAGTCACGGTTGGGTTTGAATCTGACTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000306433.9
ENST00000397802.8
CDS-3UTR CCA 90 bp GGCTTTTGTAGGGTGCTGGGAGGGGTCTCTGACTTCTTCCTTTCTATTACCTGCTGCTTTGCAGCCACATaGATGGAGCTTGAGGTAATT +
Preference number: 4 (lower is better)
Translates to: GFCRVLGGVSDFFLSITCCFAAT*MELEVI
Trigger: AATTACCTCAAGCTCCATCCATGTGGCTGCAAAGCA...GCAGGTAATAGAAAGGAAGAAGTCAGAGACCCCTCCCAGCACCCTACAAAAGCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000306433.9
ENST00000397802.8
CDS-3UTR TCA 90 bp CACCTCAGCTCCAGAGTAGCTGGGAACGAAGAATTGTATGTATTTCTGAGTGAGAGACGGGCAGGCCTCTaGAACCCAAAGTTTTTGAAG +
Preference number: 4 (lower is better)
Translates to: HLSSRVAGNEELYVFLSERRAGL*NPKFLK
Trigger: CTTCAAAAACTTTGGGTTTCAGAGGCCTGCCCGTCT...CTCACTCAGAAATACATACAATTCTTCGTTCCCAGCTACTCTGGAGCTGAGGTG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000306433.9
ENST00000397802.8
CDS-3UTR GCA 90 bp ACCCTCCCCATCTACCCTTGGAGGATGCATCAGTGGAAGAGATTAAGACATAAAAACAGCCACACACGCTaGCGCATGAGACCTTTTTCT +
Preference number: 4 (lower is better)
Translates to: TLPIYPWRMHQWKRLRHKNSHTR*RMRPFS
Trigger: AGAAAAAGGTCTCATGCGGCAGCGTGTGTGGCTGTT...TTTATGTCTTAATCTCTTCCACTGATGCATCCTCCAAGGGTAGATGGGGAGGGT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENST00000306433.9
ENST00000397802.8
CDS-3UTR CCA 90 bp CACCTCAGCTCCAGAGTAGCTGGGAACGAAGAATTGTATGTATTTCTGAGTGAGTCAGTGGGCCCCTTCTaGGTCTCACAGATTCAAGAA +
Preference number: 4 (lower is better)
Translates to: HLSSRVAGNEELYVFLSESVGPF*VSQIQE
Trigger: TTCTTGAATCTGTGAGACCCAGAAGGGGCCCACTGA...CTCACTCAGAAATACATACAATTCTTCGTTCCCAGCTACTCTGGAGCTGAGGTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000306433.9
ENST00000397802.8
CDS-3UTR CCA 90 bp CGGCCAAGTGTCAAAGAGGCCATTATTCAATACATCCCTAACTTCTCTTATGAAAAAGGCTGGAGTGAGTaGGCTCAGTGGGCCCCTTCT +
Preference number: 4 (lower is better)
Translates to: RPSVKEAIIQYIPNFSYEKGWSE*AQWAPS
Trigger: AGAAGGGGCCCACTGAGCCCACTCACTCCAGCCTTT...TTCATAAGAGAAGTTAGGGATGTATTGAATAATGGCCTCTTTGACACTTGGCCG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000306433.9
ENST00000397802.8
CDS-3UTR TCA 90 bp GTTGTGCCATCAGCGTCTAACAGCCACACACGCTGCCGCATGAGACCTTTTTCTTTTGTTAGCAATATATaGCTTCGGCTCATACATGAG +
Preference number: 4 (lower is better)
Translates to: VVPSASNSHTRCRMRPFSFVSNI*LRLIHE
Trigger: CTCATGTATGAGCCGAAGTCATATATTGCTAACAAA...AGAAAAAGGTCTCATGCGGCAGCGTGTGTGGCTGTTAGACGCTGATGGCACAAC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000306433.9
ENST00000397802.8
CDS-3UTR GCA 90 bp ATAGAACAATCTGACACCATAAATTTAGGGCATCAGGCCCAGGGTGAGGACGGGAGGGAGCAACAAATTTaGATCCACTTGCACTCATGT +
Preference number: 4 (lower is better)
Translates to: IEQSDTINLGHQAQGEDGREQQI*IHLHSC
Trigger: ACATGAGTGCAAGTGGATGCAAATTTGTTGCTCCCT...CCCGTCCTCACCCTGGGCCTGATGCCCTAAATTTATGGTGTCAGATTGTTCTAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000306433.9
ENST00000397802.8
CDS-3UTR GCA 90 bp TTAGACCAAACAGGGCTTCCCAGCACAGGTTTCCAAGGAACCCTTTCTGCTCCAAAGCATATACACAGATaGAGGGAGCAACAAATTTGC +
Preference number: 4 (lower is better)
Translates to: LDQTGLPSTGFQGTLSAPKHIHR*REQQIC
Trigger: GCAAATTTGTTGCTCCCTGCATCTGTGTATATGCTT...TGGAGCAGAAAGGGTTCCTTGGAAACCTGTGCTGGGAAGCCCTGTTTGGTCTAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000306433.9
ENST00000397802.8
CDS-3UTR GCA 90 bp GAAGTTGTGCCATCAGCGTCTAACAGCCACACACGCTGCCGCATGAGACCTTTTGTAGTTAGAAAAGTGTaGAAGCCTATTGTTCCTTCT +
Preference number: 4 (lower is better)
Translates to: EVVPSASNSHTRCRMRPFVVRKV*KPIVPS
Trigger: AGAAGGAACAATAGGCTTGCACACTTTTCTAACTAC...AAAAGGTCTCATGCGGCAGCGTGTGTGGCTGTTAGACGCTGATGGCACAACTTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000306433.9
ENST00000397802.8
CDS-3UTR CCA 90 bp GAAGTTGTGCCATCAGCGTCTAACAGCCACACACGCTGCCGCATGAGACCTTTTGTTCTCACTTATAAGTaGGAGCTAAATAATGGGTAC +
Preference number: 4 (lower is better)
Translates to: EVVPSASNSHTRCRMRPFVLTYK*ELNNGY
Trigger: GTACCCATTATTTAGCTCCCACTTATAAGTGAGAAC...AAAAGGTCTCATGCGGCAGCGTGTGTGGCTGTTAGACGCTGATGGCACAACTTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000306433.9
ENST00000397802.8
CDS-3UTR TCA 90 bp GAGTCAGATTCAAACCCAACCGTGACTCGACAGCCTGGACTCTGCCACTTAAACAGACTTTTTGCTATGTaGGATAAACATTCCCATTGC +
Preference number: 4 (lower is better)
Translates to: ESDSNPTVTRQPGLCHLNRLFAM*DKHSHC
Trigger: GCAATGGGAATGTTTATCTCACATAGCAAAAAGTCT...GTTTAAGTGGCAGAGTCCAGGCTGTCGAGTCACGGTTGGGTTTGAATCTGACTC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000306433.9
ENST00000397802.8
CDS-3UTR GCA 90 bp CGGCCAAGTGTCAAAGAGGCCATTATTCAATACATCCCTAACTTCTCTTATGAACCGTCCTCCTCCACCTaGTCATTTTACCGGTGTTTG +
Preference number: 4 (lower is better)
Translates to: RPSVKEAIIQYIPNFSYEPSSST*SFYRCL
Trigger: CAAACACCGGTAAAATGAGCAGGTGGAGGAGGACGG...TTCATAAGAGAAGTTAGGGATGTATTGAATAATGGCCTCTTTGACACTTGGCCG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000306433.9
ENST00000397802.8
CDS-3UTR CCA 90 bp GCAACAAATTTGCATCCACTTGCACTCATGTATAAATTTGGCTTTGGGCTCTTCGCTTTTGTAGGGTGCTaGGAGGGGTCTCTGACTTCT +
Preference number: 4 (lower is better)
Translates to: ATNLHPLALMYKFGFGLFAFVGC*EGSLTS
Trigger: AGAAGTCAGAGACCCCTCCCAGCACCCTACAAAAGC...GAAGAGCCCAAAGCCAAATTTATACATGAGTGCAAGTGGATGCAAATTTGTTGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000306433.9
ENST00000397802.8
CDS-3UTR CCA 90 bp CACCTCAGCTCCAGAGTAGCTGGGAACGAAGAATTGTATGTATTTCTGAGTGAGCCAAAGTTTTTGAAGTaGGCATCATCGGCCAAGTGT +
Preference number: 4 (lower is better)
Translates to: HLSSRVAGNEELYVFLSEPKFLK*ASSAKC
Trigger: ACACTTGGCCGATGATGCCCACTTCAAAAACTTTGG...CTCACTCAGAAATACATACAATTCTTCGTTCCCAGCTACTCTGGAGCTGAGGTG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000306433.9
ENST00000397802.8
CDS-3UTR CCA 90 bp ACCCTCCCCATCTACCCTTGGAGGATGCATCAGTGGAAGAGATTAAGACATAAATGCTTTGCAGCCACATaGATGGAGCTTGAGGTAATT +
Preference number: 4 (lower is better)
Translates to: TLPIYPWRMHQWKRLRHKCFAAT*MELEVI
Trigger: AATTACCTCAAGCTCCATCCATGTGGCTGCAAAGCA...TTTATGTCTTAATCTCTTCCACTGATGCATCCTCCAAGGGTAGATGGGGAGGGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000306433.9
ENST00000397802.8
3UTR CAA 72 bp TTGTGCATCAGGGATCTGAGACAGGTTGTGAGGACTTaGATACGGAGTCATAAGGTTCAAGCCAAGACATCT +
Preference number: 4 (lower is better)
Translates to: LCIRDLRQVVRT*IRSHKVQAKTS
Trigger: AGATGTCTTGGCTTGAACCTTATGACTCCGTATCAAAGTCCTCACAACCTGTCTCAGATCCCTGATGCACAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000306433.9
ENST00000397802.8
3UTR CAA 72 bp AGGGTTGAAATGCTACCTGAGTACAATGTTCACTATTaGGGTGATAGGTATGACAGAAGCCCAATCCCCACC +
Preference number: 4 (lower is better)
Translates to: RVEMLPEYNVHY*GDRYDRSPIPT
Trigger: GGTGGGGATTGGGCTTCTGTCATACCTATCACCCAAATAGTGAACATTGTACTCAGGTAGCATTTCAACCCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000306433.9
ENST00000397802.8
CDS-3UTR TCA 90 bp GCAACAAATTTGCATCCACTTGCACTCATGTATAAATTTGGCTTTGGGCTCTTCGCTGGGAGGGGTCTCTaGCTTCTTCCTTTCTATTAC +
Preference number: 4 (lower is better)
Translates to: ATNLHPLALMYKFGFGLFAGRGL*LLPFYY
Trigger: GTAATAGAAAGGAAGAAGTCAGAGACCCCTCCCAGC...GAAGAGCCCAAAGCCAAATTTATACATGAGTGCAAGTGGATGCAAATTTGTTGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000306433.9
ENST00000397802.8
3UTR CAA 72 bp TCCCACCTCAGCTCCAGAGTAGCTGGGAACGAAGAATaGTATGTATTTCTGAGTGAGATAGAGTACACGATA +
Preference number: 4 (lower is better)
Translates to: SHLSSRVAGNEE*YVFLSEIEYTI
Trigger: TATCGTGTACTCTATCTCACTCAGAAATACATACAATTCTTCGTTCCCAGCTACTCTGGAGCTGAGGTGGGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000306433.9
ENST00000397802.8
CDS-3UTR TCA 90 bp CGGCCAAGTGTCAAAGAGGCCATTATTCAATACATCCCTAACTTCTCTTATGAAGACAACACAGTACAATaGCCTGGTAAAGGGAACAGG +
Preference number: 4 (lower is better)
Translates to: RPSVKEAIIQYIPNFSYEDNTVQ*PGKGNR
Trigger: CCTGTTCCCTTTACCAGGTCATTGTACTGTGTTGTC...TTCATAAGAGAAGTTAGGGATGTATTGAATAATGGCCTCTTTGACACTTGGCCG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000306433.9
ENST00000397802.8
CDS-3UTR GCA 90 bp CGGCCAAGTGTCAAAGAGGCCATTATTCAATACATCCCTAACTTCTCTTATGAAGTGGACACCATCATTTaGAGAATGATGCTTGGCGCA +
Preference number: 4 (lower is better)
Translates to: RPSVKEAIIQYIPNFSYEVDTII*RMMLGA
Trigger: TGCGCCAAGCATCATTCTGCAAATGATGGTGTCCAC...TTCATAAGAGAAGTTAGGGATGTATTGAATAATGGCCTCTTTGACACTTGGCCG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000306433.9
ENST00000397802.8
CDS-3UTR CCA 90 bp CACCTCAGCTCCAGAGTAGCTGGGAACGAAGAATTGTATGTATTTCTGAGTGAGAACCAAAGTTACTGGTaGAGTCAGATTCAAACCCAA +
Preference number: 4 (lower is better)
Translates to: HLSSRVAGNEELYVFLSENQSYW*SQIQTQ
Trigger: TTGGGTTTGAATCTGACTCCACCAGTAACTTTGGTT...CTCACTCAGAAATACATACAATTCTTCGTTCCCAGCTACTCTGGAGCTGAGGTG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000306433.9
ENST00000397802.8
CDS-3UTR CCA 90 bp GGTATGACAGAAGCCCAATCCCCACCAGTACGCAATATACACAAACACGCACATACATACTCATTAACATaGAAGAACTGGATGTGTGTG +
Preference number: 4 (lower is better)
Translates to: GMTEAQSPPVRNIHKHAHTYSLT*KNWMCV
Trigger: CACACACATCCAGTTCTTCCATGTTAATGAGTATGT...ATGTGCGTGTTTGTGTATATTGCGTACTGGTGGGGATTGGGCTTCTGTCATACC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000306433.9
ENST00000397802.8
CDS-3UTR TCA 90 bp ACCCTCCCCATCTACCCTTGGAGGATGCATCAGTGGAAGAGATTAAGACATAAAAGACTTTTTGCTATGTaGGATAAACATTCCCATTGC +
Preference number: 4 (lower is better)
Translates to: TLPIYPWRMHQWKRLRHKRLFAM*DKHSHC
Trigger: GCAATGGGAATGTTTATCTCACATAGCAAAAAGTCT...TTTATGTCTTAATCTCTTCCACTGATGCATCCTCCAAGGGTAGATGGGGAGGGT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000306433.9
ENST00000397802.8
CDS-3UTR GCA 90 bp GCAACAAATTTGCATCCACTTGCACTCATGTATAAATTTGGCTTTGGGCTCTTCGGGCAAGGGTTGAAATaGTACCTGAGTACAATGTTC +
Preference number: 4 (lower is better)
Translates to: ATNLHPLALMYKFGFGLFGQGLK*YLSTMF
Trigger: GAACATTGTACTCAGGTAGCATTTCAACCCTTGCCC...GAAGAGCCCAAAGCCAAATTTATACATGAGTGCAAGTGGATGCAAATTTGTTGC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000306433.9
ENST00000397802.8
3UTR CAA 72 bp TCCTCTCTTTTCCCACACTTATTAATAAGACCTAATTaGTGCATCAGGGATCTGAGACAGGTTGTGAGGACT +
Preference number: 4 (lower is better)
Translates to: SSLFPHLLIRPN*CIRDLRQVVRT
Trigger: AGTCCTCACAACCTGTCTCAGATCCCTGATGCACAAATTAGGTCTTATTAATAAGTGTGGGAAAAGAGAGGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000306433.9
ENST00000397802.8
3UTR CAA 72 bp ATACACAGATGCAGGGAGCAACAAATTTGCATCCACTaGCACTCATGTATAAATTTGGCTTTGGGCTCTTCT +
Preference number: 4 (lower is better)
Translates to: IHRCREQQICIH*HSCINLALGSS
Trigger: AGAAGAGCCCAAAGCCAAATTTATACATGAGTGCAAGTGGATGCAAATTTGTTGCTCCCTGCATCTGTGTAT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000306433.9
ENST00000397802.8
CDS-3UTR GCA 90 bp CGGCCAAGTGTCAAAGAGGCCATTATTCAATACATCCCTAACTTCTCTTATGAAATAAGACCTAATTTGTaGATCAGGGATCTGAGACAG +
Preference number: 4 (lower is better)
Translates to: RPSVKEAIIQYIPNFSYEIRPNL*IRDLRQ
Trigger: CTGTCTCAGATCCCTGATGCACAAATTAGGTCTTAT...TTCATAAGAGAAGTTAGGGATGTATTGAATAATGGCCTCTTTGACACTTGGCCG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000306433.9
ENST00000397802.8
CDS-3UTR GCA 90 bp GCAACAAATTTGCATCCACTTGCACTCATGTATAAATTTGGCTTTGGGCTCTTCATAAGACCTAATTTGTaGATCAGGGATCTGAGACAG +
Preference number: 4 (lower is better)
Translates to: ATNLHPLALMYKFGFGLFIRPNL*IRDLRQ
Trigger: CTGTCTCAGATCCCTGATGCACAAATTAGGTCTTAT...GAAGAGCCCAAAGCCAAATTTATACATGAGTGCAAGTGGATGCAAATTTGTTGC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000306433.9
ENST00000397802.8
CDS-3UTR CCA 90 bp GCAACAAATTTGCATCCACTTGCACTCATGTATAAATTTGGCTTTGGGCTCTTCCCAGAAAGGGTGATATaGTCACCAAATATTCAGTCA +
Preference number: 4 (lower is better)
Translates to: ATNLHPLALMYKFGFGLFPERVI*SPNIQS
Trigger: TGACTGAATATTTGGTGACCATATCACCCTTTCTGG...GAAGAGCCCAAAGCCAAATTTATACATGAGTGCAAGTGGATGCAAATTTGTTGC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000306433.9
ENST00000397802.8
CDS-3UTR CCA 90 bp CGGCCAAGTGTCAAAGAGGCCATTATTCAATACATCCCTAACTTCTCTTATGAAGTTCTCACTTATAAGTaGGAGCTAAATAATGGGTAC +
Preference number: 4 (lower is better)
Translates to: RPSVKEAIIQYIPNFSYEVLTYK*ELNNGY
Trigger: GTACCCATTATTTAGCTCCCACTTATAAGTGAGAAC...TTCATAAGAGAAGTTAGGGATGTATTGAATAATGGCCTCTTTGACACTTGGCCG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000306433.9
ENST00000397802.8
CDS TCA 90 bp CAGCTCCTCCCCTCCCACGTGGCGAGACTCCCGGGACCACCCAGGTaGGAGCCTTTGGCTCGCGACACGCCCTCTCCAGGAACCCCGCCC +
Preference number: 5 (lower is better)
Translates to: QLLPSHVARLPGPPR*EPLARDTPSPGTPP
Trigger: GGGCGGGGTTCCTGGAGAGGGCGTGTCGCGAGCCAAAGGCTCTCACCTGGGTGGTCCCGGGAGTCTCGCCACGTGGGAGGGGAGGAGCTG
71% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000397802.8
CDS-3UTR CAA 90 bp TCTGGAGCAGGCAGCAGCCGTGGGCACAGGCGCCGTCCTCCTCCACCTGCTCATTCGACCCATCCCCCTTaGCCAGGGCCTGGTCCAAGA +
Preference number: 5 (lower is better)
Translates to: SGAGSSRGHRRRPPPPAHSTHPP*PGPGPR
Trigger: TCTTGGACCAGGCCCTGGCAAAGGGGGATGGGTCGA...ATGAGCAGGTGGAGGAGGACGGCGCCTGTGCCCACGGCTGCTGCCTGCTCCAGA
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000306433.9
ENST00000397802.8
CDS-3UTR CAA 90 bp GCAGTCCACACGCTTCCTGCCCCTGCAACCCAGCAGGCACCAAGAGAAGCCGGCTCGACCCATCCCCCTTaGCCAGGGCCTGGTCCAAGA +
Preference number: 5 (lower is better)
Translates to: AVHTLPAPATQQAPREAGSTHPP*PGPGPR
Trigger: TCTTGGACCAGGCCCTGGCAAAGGGGGATGGGTCGA...GCCGGCTTCTCTTGGTGCCTGCTGGGTTGCAGGGGCAGGAAGCGTGTGGACTGC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000306433.9
ENST00000397802.8
CDS-3UTR CAA 90 bp TCTGGAGCAGGCAGCAGCCGTGGGCACAGGCGCCGTCCTCCTCCACCTGCTCATCTTGCCCAAGAGGAGTaGCACCCTTCCAGACTTGCG +
Preference number: 5 (lower is better)
Translates to: SGAGSSRGHRRRPPPPAHLAQEE*HPSRLA
Trigger: CGCAAGTCTGGAAGGGTGCAACTCCTCTTGGGCAAG...ATGAGCAGGTGGAGGAGGACGGCGCCTGTGCCCACGGCTGCTGCCTGCTCCAGA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000306433.9
ENST00000397802.8
ENST00000518039.1
CDS-3UTR CAA 90 bp GCCCCTGCAACCCAGCAGGCACCAAGAGAAGCCGGCCCCTTCACACAGACCCTCTTTCCTTCCGACATGTaGCCTGCAACGCGACCAGCC +
Preference number: 5 (lower is better)
Translates to: APATQQAPREAGPFTQTLFPSDM*PATRPA
Trigger: GGCTGGTCGCGTTGCAGGCAACATGTCGGAAGGAAA...GAGGGTCTGTGTGAAGGGGCCGGCTTCTCTTGGTGCCTGCTGGGTTGCAGGGGC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000306433.9
CDS-3UTR CAA 90 bp TCTGGAGCAGGCAGCAGCCGTGGGCACAGGCGCCGTCCTCCTCCACCTGCTCATGTGAAGGTTTTCTTCTaGACTCCCCCGAGGGTGAGG +
Preference number: 5 (lower is better)
Translates to: SGAGSSRGHRRRPPPPAHVKVFF*TPPRVR
Trigger: CCTCACCCTCGGGGGAGTCAAGAAGAAAACCTTCAC...ATGAGCAGGTGGAGGAGGACGGCGCCTGTGCCCACGGCTGCTGCCTGCTCCAGA
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000306433.9
ENST00000397802.8
ENST00000518039.1
CDS-3UTR CAA 90 bp GCCCCTGCAACCCAGCAGGCACCAAGAGAAGCCGGCCCCTTCACACAGACCCTCTCCATGCCCCTCTCGTaGTCGGTCTCTGTCCCTTTC +
Preference number: 5 (lower is better)
Translates to: APATQQAPREAGPFTQTLSMPLS*SVSVPF
Trigger: GAAAGGGACAGAGACCGACAACGAGAGGGGCATGGA...GAGGGTCTGTGTGAAGGGGCCGGCTTCTCTTGGTGCCTGCTGGGTTGCAGGGGC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENST00000306433.9
ENST00000397802.8
ENST00000518039.1
CDS-3UTR CAA 90 bp GCAGTCCACACGCTTCCTGCCCCTGCAACCCAGCAGGCACCAAGAGAAGCCGGCCTTGCCCAAGAGGAGTaGCACCCTTCCAGACTTGCG +
Preference number: 5 (lower is better)
Translates to: AVHTLPAPATQQAPREAGLAQEE*HPSRLA
Trigger: CGCAAGTCTGGAAGGGTGCAACTCCTCTTGGGCAAG...GCCGGCTTCTCTTGGTGCCTGCTGGGTTGCAGGGGCAGGAAGCGTGTGGACTGC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000306433.9
ENST00000397802.8
ENST00000518039.1
CDS-3UTR CAA 90 bp GCCGGCCCCTTCACACAGACCCTCCCCATCTACCCTTGGAGGATGCATCAGTGGCGGTCTTTCTCCTGCTaGATGAGCACCACCTGTCCG +
Preference number: 5 (lower is better)
Translates to: AGPFTQTLPIYPWRMHQWRSFSC*MSTTCP
Trigger: CGGACAGGTGGTGCTCATCAAGCAGGAGAAAGACCG...CCACTGATGCATCCTCCAAGGGTAGATGGGGAGGGTCTGTGTGAAGGGGCCGGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000306433.9
ENST00000397802.8
CDS-3UTR CAA 90 bp TGCAGTCCACACGCTTCCTGCCCCTGCAACCCAGCAGGCACCAAGAGAAGCCGGCCTCCCCATCTACCCTaGGAGGATGCATCAGTGGAA +
Preference number: 5 (lower is better)
Translates to: CSPHASCPCNPAGTKRSRPPHLP*EDASVE
Trigger: TTCCACTGATGCATCCTCCAAGGGTAGATGGGGAGG...CCGGCTTCTCTTGGTGCCTGCTGGGTTGCAGGGGCAGGAAGCGTGTGGACTGCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000306433.9
ENST00000397802.8
ENST00000518039.1
CDS-3UTR CAA 90 bp TGCAGTCCACACGCTTCCTGCCCCTGCAACCCAGCAGGCACCAAGAGAAGCCGGAGGCGGGAGGATCACTaGAACCTGGGAGACAGAGTT +
Preference number: 5 (lower is better)
Translates to: CSPHASCPCNPAGTKRSRRREDH*NLGDRV
Trigger: AACTCTGTCTCCCAGGTTCAAGTGATCCTCCCGCCT...CCGGCTTCTCTTGGTGCCTGCTGGGTTGCAGGGGCAGGAAGCGTGTGGACTGCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000306433.9
ENST00000397802.8
CDS-3UTR CAA 90 bp AGCCGGCCCCTTCACACAGACCCTCCCCATCTACCCTTGGAGGATGCATCAGTGCGGTCTTTCTCCTGCTaGATGAGCACCACCTGTCCG +
Preference number: 5 (lower is better)
Translates to: SRPLHTDPPHLPLEDASVRSFSC*MSTTCP
Trigger: CGGACAGGTGGTGCTCATCAAGCAGGAGAAAGACCG...CACTGATGCATCCTCCAAGGGTAGATGGGGAGGGTCTGTGTGAAGGGGCCGGCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000306433.9
ENST00000397802.8
CDS-3UTR CAA 90 bp TGCAACCCAGCAGGCACCAAGAGAAGCCGGCCCCTTCACACAGACCCTCCCCATTGCACCCTTCCAGACTaGCGGATGAGTAGCTTGCCA +
Preference number: 5 (lower is better)
Translates to: CNPAGTKRSRPLHTDPPHCTLPD*RMSSLP
Trigger: TGGCAAGCTACTCATCCGCAAGTCTGGAAGGGTGCA...ATGGGGAGGGTCTGTGTGAAGGGGCCGGCTTCTCTTGGTGCCTGCTGGGTTGCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000306433.9
ENST00000397802.8
ENST00000518039.1
CDS-3UTR CAA 90 bp CCAGGGGATACACTAGTCGACCCATCCCCCTTTGCCAGGGCCTGGTCCAAGAGTCTTGCCCAAGAGGAGTaGCACCCTTCCAGACTTGCG +
Preference number: 5 (lower is better)
Translates to: PGDTLVDPSPFARAWSKSLAQEE*HPSRLA
Trigger: CGCAAGTCTGGAAGGGTGCAACTCCTCTTGGGCAAG...ACTCTTGGACCAGGCCCTGGCAAAGGGGGATGGGTCGACTAGTGTATCCCCTGG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000306433.9
ENST00000397802.8
CDS-3UTR CAA 90 bp AGCCGGCCCCTTCACACAGACCCTCCCCATCTACCCTTGGAGGATGCATCAGTGGTGAAGGTTTTCTTCTaGACTCCCCCGAGGGTGAGG +
Preference number: 5 (lower is better)
Translates to: SRPLHTDPPHLPLEDASVVKVFF*TPPRVR
Trigger: CCTCACCCTCGGGGGAGTCAAGAAGAAAACCTTCAC...CACTGATGCATCCTCCAAGGGTAGATGGGGAGGGTCTGTGTGAAGGGGCCGGCT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 3 transcripts:
ENST00000306433.9
ENST00000397802.8
ENST00000518039.1
CDS-3UTR CAA 90 bp AGCCGGCCCCTTCACACAGACCCTCCCCATCTACCCTTGGAGGATGCATCAGTGTGCACCCTTCCAGACTaGCGGATGAGTAGCTTGCCA +
Preference number: 5 (lower is better)
Translates to: SRPLHTDPPHLPLEDASVCTLPD*RMSSLP
Trigger: TGGCAAGCTACTCATCCGCAAGTCTGGAAGGGTGCA...CACTGATGCATCCTCCAAGGGTAGATGGGGAGGGTCTGTGTGAAGGGGCCGGCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000306433.9
ENST00000397802.8
ENST00000518039.1
CDS-3UTR CAA 90 bp CCCAGCAGGCACCAAGAGAAGCCGGCCCCTTCACACAGACCCTCCCCATCTACCGCATTCTCTGCCAATTaGGCTTCCTTTCACAGCAGG +
Preference number: 5 (lower is better)
Translates to: PSRHQEKPAPSHRPSPSTAFSAN*ASFHSR
Trigger: CCTGCTGTGAAAGGAAGCCAAATTGGCAGAGAATGC...GGTAGATGGGGAGGGTCTGTGTGAAGGGGCCGGCTTCTCTTGGTGCCTGCTGGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000518039.1
CDS-3UTR CAA 90 bp AAGCCGGCCCCTTCACACAGACCCTCCCCATCTACCCTTGGAGGATGCATCAGTTGCACCCTTCCAGACTaGCGGATGAGTAGCTTGCCA +
Preference number: 5 (lower is better)
Translates to: KPAPSHRPSPSTLGGCISCTLPD*RMSSLP
Trigger: TGGCAAGCTACTCATCCGCAAGTCTGGAAGGGTGCA...ACTGATGCATCCTCCAAGGGTAGATGGGGAGGGTCTGTGTGAAGGGGCCGGCTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000306433.9
ENST00000397802.8
ENST00000518039.1
CDS-3UTR CAA 90 bp GAAGCCGGCCCCTTCACACAGACCCTCCCCATCTACCCTTGGAGGATGCATCAGGGGGAACATACAAGTTaGTGCTTCACGTGTCCCAGG +
Preference number: 5 (lower is better)
Translates to: EAGPFTQTLPIYPWRMHQGEHTS*CFTCPR
Trigger: CCTGGGACACGTGAAGCACAAACTTGTATGTTCCCC...CTGATGCATCCTCCAAGGGTAGATGGGGAGGGTCTGTGTGAAGGGGCCGGCTTC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENST00000306433.9
ENST00000397802.8
ENST00000518039.1
CDS-3UTR CAA 90 bp GAAGCCGGCCCCTTCACACAGACCCTCCCCATCTACCCTTGGAGGATGCATCAGGCATTCTCTGCCAATTaGGCTTCTCGGTCTTTCTCC +
Preference number: 5 (lower is better)
Translates to: EAGPFTQTLPIYPWRMHQAFSAN*ASRSFS
Trigger: GGAGAAAGACCGAGAAGCCAAATTGGCAGAGAATGC...CTGATGCATCCTCCAAGGGTAGATGGGGAGGGTCTGTGTGAAGGGGCCGGCTTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000306433.9
ENST00000397802.8
CDS-3UTR CAA 90 bp GCCCCTGCAACCCAGCAGGCACCAAGAGAAGCCGGCCCCTTCACACAGACCCTCGCTGGGAACGAAGAATaGTATGTATTTCTGAGTGAG +
Preference number: 5 (lower is better)
Translates to: APATQQAPREAGPFTQTLAGNEE*YVFLSE
Trigger: CTCACTCAGAAATACATACAATTCTTCGTTCCCAGC...GAGGGTCTGTGTGAAGGGGCCGGCTTCTCTTGGTGCCTGCTGGGTTGCAGGGGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000306433.9
ENST00000397802.8
CDS-3UTR CAA 90 bp GAACCTGGGAGACAGAGTTGCAGTAAGCCAAGATCACACCACTGGGCGACAGAGGTGAAGGTTTTCTTCTaGACTCCCCCGAGGGTGAGG +
Preference number: 5 (lower is better)
Translates to: EPGRQSCSKPRSHHWATEVKVFF*TPPRVR
Trigger: CCTCACCCTCGGGGGAGTCAAGAAGAAAACCTTCAC...CTCTGTCGCCCAGTGGTGTGATCTTGGCTTACTGCAACTCTGTCTCCCAGGTTC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000306433.9
ENST00000397802.8
CDS-3UTR CAA 90 bp TGCAACCCAGCAGGCACCAAGAGAAGCCGGCCCCTTCACACAGACCCTCCCCATACAGTTACTTCTTCCTaGGGCTCTTCCTTGATCTTC +
Preference number: 5 (lower is better)
Translates to: CNPAGTKRSRPLHTDPPHTVTSS*GSSLIF
Trigger: GAAGATCAAGGAAGAGCCCAAGGAAGAAGTAACTGT...ATGGGGAGGGTCTGTGTGAAGGGGCCGGCTTCTCTTGGTGCCTGCTGGGTTGCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000306433.9
ENST00000397802.8
ENST00000518039.1
CDS-3UTR CAA 90 bp ACCAGGGAAAACCCCAGCCCTACTGTCAAGACAAGAGGAGAAGCTGTTCCTCCATCCATGCCCCTCTCGTaGTCGGTCTCTGTCCCTTTC +
Preference number: 5 (lower is better)
Translates to: TRENPSPTVKTRGEAVPPSMPLS*SVSVPF
Trigger: GAAAGGGACAGAGACCGACAACGAGAGGGGCATGGA...TGGAGGAACAGCTTCTCCTCTTGTCTTGACAGTAGGGCTGGGGTTTTCCCTGGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000306433.9
ENST00000397802.8
CDS-3UTR CAA 90 bp GAACCTGGGAGACAGAGTTGCAGTAAGCCAAGATCACACCACTGGGCGACAGAGTCTGTCTTGATAGGCTaGATGTCCTGGGTGGGTGGC +
Preference number: 5 (lower is better)
Translates to: EPGRQSCSKPRSHHWATESVLIG*MSWVGG
Trigger: GCCACCCACCCAGGACATCAAGCCTATCAAGACAGA...CTCTGTCGCCCAGTGGTGTGATCTTGGCTTACTGCAACTCTGTCTCCCAGGTTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000306433.9
ENST00000397802.8
CDS-3UTR CAA 90 bp GAAGCCGGCCCCTTCACACAGACCCTCCCCATCTACCCTTGGAGGATGCATCAGATGAAATCATGTGCTTaGCAGCCACATGGATGGAGC +
Preference number: 5 (lower is better)
Translates to: EAGPFTQTLPIYPWRMHQMKSCA*QPHGWS
Trigger: GCTCCATCCATGTGGCTGCAAAGCACATGATTTCAT...CTGATGCATCCTCCAAGGGTAGATGGGGAGGGTCTGTGTGAAGGGGCCGGCTTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000306433.9
ENST00000397802.8
CDS-3UTR CAA 90 bp CCTGCAACCCAGCAGGCACCAAGAGAAGCCGGCCCCTTCACACAGACCCTCCCCTTAATAAGACCTAATTaGTGCATCAGGGATCTGAGA +
Preference number: 5 (lower is better)
Translates to: PATQQAPREAGPFTQTLPLIRPN*CIRDLR
Trigger: TCTCAGATCCCTGATGCACAAATTAGGTCTTATTAA...GGGGAGGGTCTGTGTGAAGGGGCCGGCTTCTCTTGGTGCCTGCTGGGTTGCAGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000306433.9
ENST00000397802.8
CDS-3UTR CAA 90 bp TGCAACCCAGCAGGCACCAAGAGAAGCCGGCCCCTTCACACAGACCCTCCCCATATCTGTCCATATTCCTaGGTAGAAATGCATGCCTCA +
Preference number: 5 (lower is better)
Translates to: CNPAGTKRSRPLHTDPPHICPYS*VEMHAS
Trigger: TGAGGCATGCATTTCTACCAAGGAATATGGACAGAT...ATGGGGAGGGTCTGTGTGAAGGGGCCGGCTTCTCTTGGTGCCTGCTGGGTTGCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000306433.9
ENST00000397802.8
CDS-3UTR CAA 90 bp AAGCCGGCCCCTTCACACAGACCCTCCCCATCTACCCTTGGAGGATGCATCAGTACAGTTACTTCTTCCTaGGGCTCTTCCTTGATCTTC +
Preference number: 5 (lower is better)
Translates to: KPAPSHRPSPSTLGGCISTVTSS*GSSLIF
Trigger: GAAGATCAAGGAAGAGCCCAAGGAAGAAGTAACTGT...ACTGATGCATCCTCCAAGGGTAGATGGGGAGGGTCTGTGTGAAGGGGCCGGCTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000306433.9
ENST00000397802.8
ENST00000518039.1
CDS-3UTR CAA 90 bp GAGTCAGATTCAAACCCAACCGTGACTCGACAGCCTGGACTCTGCCACTTAAACGGAGGAGCCTTCATCTaGGCCTCTTCCTCCTCATCT +
Preference number: 5 (lower is better)
Translates to: ESDSNPTVTRQPGLCHLNGGAFI*ASSSSS
Trigger: AGATGAGGAGGAAGAGGCCAAGATGAAGGCTCCTCC...GTTTAAGTGGCAGAGTCCAGGCTGTCGAGTCACGGTTGGGTTTGAATCTGACTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000306433.9
ENST00000397802.8
CDS-3UTR CAA 90 bp GGAGGCTCAGAAAGGTTAGGTAGTTTGTCCAAGGACACAGAACCAGGAACTGGCGGAGGAGCCTTCATCTaGGCCTCTTCCTCCTCATCT +
Preference number: 5 (lower is better)
Translates to: GGSERLGSLSKDTEPGTGGGAFI*ASSSSS
Trigger: AGATGAGGAGGAAGAGGCCAAGATGAAGGCTCCTCC...GCCAGTTCCTGGTTCTGTGTCCTTGGACAAACTACCTAACCTTTCTGAGCCTCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000306433.9
ENST00000397802.8
CDS-3UTR CAA 90 bp GAGTCAGATTCAAACCCAACCGTGACTCGACAGCCTGGACTCTGCCACTTAAACTCTGTCTTGATAGGCTaGATGTCCTGGGTGGGTGGC +
Preference number: 5 (lower is better)
Translates to: ESDSNPTVTRQPGLCHLNSVLIG*MSWVGG
Trigger: GCCACCCACCCAGGACATCAAGCCTATCAAGACAGA...GTTTAAGTGGCAGAGTCCAGGCTGTCGAGTCACGGTTGGGTTTGAATCTGACTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000306433.9
ENST00000397802.8
CDS-3UTR CAA 90 bp CAATCCCCACCAGTACGCAATATACACAAACACGCACATGTGGCTGGGCGCAGTGGGGAACATACAAGTTaGTGCTTCACGTGTCCCAGG +
Preference number: 5 (lower is better)
Translates to: QSPPVRNIHKHAHVAGRSGEHTS*CFTCPR
Trigger: CCTGGGACACGTGAAGCACAAACTTGTATGTTCCCC...ACTGCGCCCAGCCACATGTGCGTGTTTGTGTATATTGCGTACTGGTGGGGATTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000306433.9
ENST00000397802.8
CDS-3UTR CAA 90 bp CGGTTCTTCCTGAGCCCCTATGGTTCATACTGTCCCAGAGGCCAGGTGCCACGACAGGTTGTGAGGACTTaGATACGGAGTCATAAGGTT +
Preference number: 5 (lower is better)
Translates to: RFFLSPYGSYCPRGQVPRQVVRT*IRSHKV
Trigger: AACCTTATGACTCCGTATCAAAGTCCTCACAACCTG...TCGTGGCACCTGGCCTCTGGGACAGTATGAACCATAGGGGCTCAGGAAGAACCG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000306433.9
ENST00000397802.8
CDS-3UTR CAA 90 bp CGGTTCTTCCTGAGCCCCTATGGTTCATACTGTCCCAGAGGCCAGGTGCCACGAACATTGCAGCATTTTTaGAACATGGCAGCAGCTACT +
Preference number: 5 (lower is better)
Translates to: RFFLSPYGSYCPRGQVPRTLQHF*NMAAAT
Trigger: AGTAGCTGCTGCCATGTTCAAAAAATGCTGCAATGT...TCGTGGCACCTGGCCTCTGGGACAGTATGAACCATAGGGGCTCAGGAAGAACCG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000306433.9
ENST00000397802.8
CDS-3UTR CAA 90 bp GAAGTTGTGCCATCAGCGTCTAACAGCCACACACGCTGCCGCATGAGACCTTTTATGAAATCATGTGCTTaGCAGCCACATGGATGGAGC +
Preference number: 5 (lower is better)
Translates to: EVVPSASNSHTRCRMRPFMKSCA*QPHGWS
Trigger: GCTCCATCCATGTGGCTGCAAAGCACATGATTTCAT...AAAAGGTCTCATGCGGCAGCGTGTGTGGCTGTTAGACGCTGATGGCACAACTTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000306433.9
ENST00000397802.8
CDS-3UTR CAA 90 bp GAGTCAGATTCAAACCCAACCGTGACTCGACAGCCTGGACTCTGCCACTTAAACTCTCAGACTCAATCCTaGCTCTCTCTCCTATACTGC +
Preference number: 5 (lower is better)
Translates to: ESDSNPTVTRQPGLCHLNSQTQS*LSLLYC
Trigger: GCAGTATAGGAGAGAGAGCAAGGATTGAGTCTGAGA...GTTTAAGTGGCAGAGTCCAGGCTGTCGAGTCACGGTTGGGTTTGAATCTGACTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000306433.9
ENST00000397802.8
CDS-3UTR CAA 90 bp ATAGAACAATCTGACACCATAAATTTAGGGCATCAGGCCCAGGGTGAGGACGGGGGACATGAACGTTTATaGAGTGCCTGCTGGTTCTGG +
Preference number: 5 (lower is better)
Translates to: IEQSDTINLGHQAQGEDGGHERL*SACWFW
Trigger: CCAGAACCAGCAGGCACTCAATAAACGTTCATGTCC...CCCGTCCTCACCCTGGGCCTGATGCCCTAAATTTATGGTGTCAGATTGTTCTAT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000306433.9
ENST00000397802.8
CDS-3UTR CAA 90 bp GGTATGACAGAAGCCCAATCCCCACCAGTACGCAATATACACAAACACGCACATGCCAGCAAAGGGAAGTaGTGCCATCAGCGTCTAACA +
Preference number: 5 (lower is better)
Translates to: GMTEAQSPPVRNIHKHAHASKGK*CHQRLT
Trigger: TGTTAGACGCTGATGGCACAACTTCCCTTTGCTGGC...ATGTGCGTGTTTGTGTATATTGCGTACTGGTGGGGATTGGGCTTCTGTCATACC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000306433.9
ENST00000397802.8
CDS-3UTR CAA 90 bp GAACCTGGGAGACAGAGTTGCAGTAAGCCAAGATCACACCACTGGGCGACAGAGATCTGTCCATATTCCTaGGTAGAAATGCATGCCTCA +
Preference number: 5 (lower is better)
Translates to: EPGRQSCSKPRSHHWATEICPYS*VEMHAS
Trigger: TGAGGCATGCATTTCTACCAAGGAATATGGACAGAT...CTCTGTCGCCCAGTGGTGTGATCTTGGCTTACTGCAACTCTGTCTCCCAGGTTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000306433.9
ENST00000397802.8
CDS-3UTR CAA 90 bp TTAGACCAAACAGGGCTTCCCAGCACAGGTTTCCAAGGAACCCTTTCTGCTCCACAGGGAGCAACAAATTaGCATCCACTTGCACTCATG +
Preference number: 5 (lower is better)
Translates to: LDQTGLPSTGFQGTLSAPQGATN*HPLALM
Trigger: CATGAGTGCAAGTGGATGCAAATTTGTTGCTCCCTG...TGGAGCAGAAAGGGTTCCTTGGAAACCTGTGCTGGGAAGCCCTGTTTGGTCTAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000306433.9
ENST00000397802.8
CDS-3UTR CAA 90 bp ACCCTCCCCATCTACCCTTGGAGGATGCATCAGTGGAAGAGATTAAGACATAAAAGGCGGGAGGATCACTaGAACCTGGGAGACAGAGTT +
Preference number: 5 (lower is better)
Translates to: TLPIYPWRMHQWKRLRHKRREDH*NLGDRV
Trigger: AACTCTGTCTCCCAGGTTCAAGTGATCCTCCCGCCT...TTTATGTCTTAATCTCTTCCACTGATGCATCCTCCAAGGGTAGATGGGGAGGGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000306433.9
ENST00000397802.8
CDS-3UTR CAA 90 bp GGTATGACAGAAGCCCAATCCCCACCAGTACGCAATATACACAAACACGCACATGCATTCTCTGCCAATTaGGCTTCTCGGTCTTTCTCC +
Preference number: 5 (lower is better)
Translates to: GMTEAQSPPVRNIHKHAHAFSAN*ASRSFS
Trigger: GGAGAAAGACCGAGAAGCCAAATTGGCAGAGAATGC...ATGTGCGTGTTTGTGTATATTGCGTACTGGTGGGGATTGGGCTTCTGTCATACC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000306433.9
ENST00000397802.8
CDS-3UTR CAA 90 bp GGCTTTTGTAGGGTGCTGGGAGGGGTCTCTGACTTCTTCCTTTCTATTACCTGCCAGGTTGTGAGGACTTaGATACGGAGTCATAAGGTT +
Preference number: 5 (lower is better)
Translates to: GFCRVLGGVSDFFLSITCQVVRT*IRSHKV
Trigger: AACCTTATGACTCCGTATCAAAGTCCTCACAACCTG...GCAGGTAATAGAAAGGAAGAAGTCAGAGACCCCTCCCAGCACCCTACAAAAGCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000306433.9
ENST00000397802.8
CDS-3UTR CAA 90 bp GGTATGACAGAAGCCCAATCCCCACCAGTACGCAATATACACAAACACGCACATTCCTTGGGCTCTTCCTaGATCTTCCGACTGATGATA +
Preference number: 5 (lower is better)
Translates to: GMTEAQSPPVRNIHKHAHSLGSS*IFRLMI
Trigger: TATCATCAGTCGGAAGATCAAGGAAGAGCCCAAGGA...ATGTGCGTGTTTGTGTATATTGCGTACTGGTGGGGATTGGGCTTCTGTCATACC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000306433.9
ENST00000397802.8
CDS-3UTR CAA 90 bp CGGCCAAGTGTCAAAGAGGCCATTATTCAATACATCCCTAACTTCTCTTATGAATCCATGCCCCTCTCGTaGTCGGTCTCTGTCCCTTTC +
Preference number: 5 (lower is better)
Translates to: RPSVKEAIIQYIPNFSYESMPLS*SVSVPF
Trigger: GAAAGGGACAGAGACCGACAACGAGAGGGGCATGGA...TTCATAAGAGAAGTTAGGGATGTATTGAATAATGGCCTCTTTGACACTTGGCCG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000306433.9
ENST00000397802.8
CDS-3UTR CAA 90 bp GGCTTTTGTAGGGTGCTGGGAGGGGTCTCTGACTTCTTCCTTTCTATTACCTGCACATTGCAGCATTTTTaGAACATGGCAGCAGCTACT +
Preference number: 5 (lower is better)
Translates to: GFCRVLGGVSDFFLSITCTLQHF*NMAAAT
Trigger: AGTAGCTGCTGCCATGTTCAAAAAATGCTGCAATGT...GCAGGTAATAGAAAGGAAGAAGTCAGAGACCCCTCCCAGCACCCTACAAAAGCC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000306433.9
ENST00000397802.8
CDS-3UTR CAA 90 bp ACCCTCCCCATCTACCCTTGGAGGATGCATCAGTGGAAGAGATTAAGACATAAACAGGGAGCAACAAATTaGCATCCACTTGCACTCATG +
Preference number: 5 (lower is better)
Translates to: TLPIYPWRMHQWKRLRHKQGATN*HPLALM
Trigger: CATGAGTGCAAGTGGATGCAAATTTGTTGCTCCCTG...TTTATGTCTTAATCTCTTCCACTGATGCATCCTCCAAGGGTAGATGGGGAGGGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000306433.9
ENST00000397802.8
CDS-3UTR CAA 90 bp ACCCTCCCCATCTACCCTTGGAGGATGCATCAGTGGAAGAGATTAAGACATAAAACAGTTACTTCTTCCTaGGGCTCTTCCTTGATCTTC +
Preference number: 5 (lower is better)
Translates to: TLPIYPWRMHQWKRLRHKTVTSS*GSSLIF
Trigger: GAAGATCAAGGAAGAGCCCAAGGAAGAAGTAACTGT...TTTATGTCTTAATCTCTTCCACTGATGCATCCTCCAAGGGTAGATGGGGAGGGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000306433.9
ENST00000397802.8
ENST00000518039.1
CDS-3UTR CAA 90 bp GCAACAAATTTGCATCCACTTGCACTCATGTATAAATTTGGCTTTGGGCTCTTCGGGGAACATACAAGTTaGTGCTTCACGTGTCCCAGG +
Preference number: 5 (lower is better)
Translates to: ATNLHPLALMYKFGFGLFGEHTS*CFTCPR
Trigger: CCTGGGACACGTGAAGCACAAACTTGTATGTTCCCC...GAAGAGCCCAAAGCCAAATTTATACATGAGTGCAAGTGGATGCAAATTTGTTGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000306433.9
ENST00000397802.8
CDS-3UTR CAA 90 bp GGTATGACAGAAGCCCAATCCCCACCAGTACGCAATATACACAAACACGCACATGCTGGGAACGAAGAATaGTATGTATTTCTGAGTGAG +
Preference number: 5 (lower is better)
Translates to: GMTEAQSPPVRNIHKHAHAGNEE*YVFLSE
Trigger: CTCACTCAGAAATACATACAATTCTTCGTTCCCAGC...ATGTGCGTGTTTGTGTATATTGCGTACTGGTGGGGATTGGGCTTCTGTCATACC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000306433.9
ENST00000397802.8
CDS-3UTR CAA 90 bp GCAACAAATTTGCATCCACTTGCACTCATGTATAAATTTGGCTTTGGGCTCTTCGGACATGAACGTTTATaGAGTGCCTGCTGGTTCTGG +
Preference number: 5 (lower is better)
Translates to: ATNLHPLALMYKFGFGLFGHERL*SACWFW
Trigger: CCAGAACCAGCAGGCACTCAATAAACGTTCATGTCC...GAAGAGCCCAAAGCCAAATTTATACATGAGTGCAAGTGGATGCAAATTTGTTGC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000306433.9
ENST00000397802.8
CDS-3UTR CAA 90 bp ACCCTCCCCATCTACCCTTGGAGGATGCATCAGTGGAAGAGATTAAGACATAAATTAATAAGACCTAATTaGTGCATCAGGGATCTGAGA +
Preference number: 5 (lower is better)
Translates to: TLPIYPWRMHQWKRLRHKLIRPN*CIRDLR
Trigger: TCTCAGATCCCTGATGCACAAATTAGGTCTTATTAA...TTTATGTCTTAATCTCTTCCACTGATGCATCCTCCAAGGGTAGATGGGGAGGGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000306433.9
ENST00000397802.8
CDS-3UTR CAA 90 bp CGGCCAAGTGTCAAAGAGGCCATTATTCAATACATCCCTAACTTCTCTTATGAACACTCATGTATAAATTaGGCTTTGGGCTCTTCTCCT +
Preference number: 5 (lower is better)
Translates to: RPSVKEAIIQYIPNFSYEHSCIN*ALGSSP
Trigger: AGGAGAAGAGCCCAAAGCCAAATTTATACATGAGTG...TTCATAAGAGAAGTTAGGGATGTATTGAATAATGGCCTCTTTGACACTTGGCCG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000306433.9
ENST00000397802.8
CDS-3UTR CAA 90 bp GCAACAAATTTGCATCCACTTGCACTCATGTATAAATTTGGCTTTGGGCTCTTCCACTCATGTATAAATTaGGCTTTGGGCTCTTCTCCT +
Preference number: 5 (lower is better)
Translates to: ATNLHPLALMYKFGFGLFHSCIN*ALGSSP
Trigger: AGGAGAAGAGCCCAAAGCCAAATTTATACATGAGTG...GAAGAGCCCAAAGCCAAATTTATACATGAGTGCAAGTGGATGCAAATTTGTTGC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000306433.9
ENST00000397802.8
CDS TCA 72 bp CCCTCCCACGTGGCGAGACTCCCGGGACCACCCAGGTaGGAGCCTTTGGCTCGCGACACGCCCTCTCCAGGA +
Preference number: 6 (lower is better)
Translates to: PSHVARLPGPPR*EPLARDTPSPG
Trigger: TCCTGGAGAGGGCGTGTCGCGAGCCAAAGGCTCTCACCTGGGTGGTCCCGGGAGTCTCGCCACGTGGGAGGG
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000397802.8
CDS CCA 72 bp TGGCGAGACTCCCGGGACCACCCAGGTGAGAGCCTTTaGCTCGCGACACGCCCTCTCCAGGAACCCCGCCCA +
Preference number: 6 (lower is better)
Translates to: WRDSRDHPGESL*LATRPLQEPRP
Trigger: TGGGCGGGGTTCCTGGAGAGGGCGTGTCGCGAGCCAAAGGCTCTCACCTGGGTGGTCCCGGGAGTCTCGCCA
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000397802.8
CDS GCA 72 bp GACTGGATCACTTCTGGACGGCCTCGCCCTCGTCCATaGCCCTCTCGTTGTCGGTCTCTGTCCCTTTCACGC +
Preference number: 6 (lower is better)
Translates to: DWITSGRPRPRP*PSRCRSLSLSR
Trigger: GCGTGAAAGGGACAGAGACCGACAACGAGAGGGGCATGGACGAGGGCGAGGCCGTCCAGAAGTGATCCAGTC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENST00000306433.9
ENST00000397802.8
ENST00000517789.2
ENST00000518039.1
ENST00000519237.5
CDS CAA 72 bp TTCTGGACGGCCTCGCCCTCGTCCATGCCCCTCTCGTaGTCGGTCTCTGTCCCTTTCACGCTTCTCCTTCTT +
Preference number: 6 (lower is better)
Translates to: FWTASPSSMPLS*SVSVPFTLLLL
Trigger: AAGAAGGAGAAGCGTGAAAGGGACAGAGACCGACAACGAGAGGGGCATGGACGAGGGCGAGGCCGTCCAGAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENST00000306433.9
ENST00000397802.8
ENST00000517789.2
ENST00000518039.1
ENST00000519237.5
CDS CAA 90 bp CTGGATCACTTCTGGACGGCCTCGCCCTCGTCCATGCCCCTCTCGTaGTCGGTCTCTGTCCCTTTCACGCTTCTCCTTCTTGACAGTTAC +
Preference number: 6 (lower is better)
Translates to: LDHFWTASPSSMPLS*SVSVPFTLLLLDSY
Trigger: GTAACTGTCAAGAAGGAGAAGCGTGAAAGGGACAGAGACCGACAACGAGAGGGGCATGGACGAGGGCGAGGCCGTCCAGAAGTGATCCAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENST00000306433.9
ENST00000397802.8
ENST00000517789.2
ENST00000518039.1
ENST00000519237.5