Pregenerated sensors for POLR2K (Homo sapiens)
Ensembl gene IDs: ENSG00000147669Ensembl transcript IDs: ENST00000353107.8, ENST00000522439.1
Found 21 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR CCA 90 bp | GGACACAATTCTCAGAATGTATCCCTATCCTCAAGCTTGACTGCACAGAATCCCTTAGAGCCTATGCATTaGTCCATGAAAATGCTAATC | + |
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Preference number: 2 (lower is better) Translates to: GHNSQNVSLSSSLTAQNPLEPMH*SMKMLI Trigger: GATTAGCATTTTCATGGACCAATGCATAGGCTCTAA...GGGATTCTGTGCAGTCAAGCTTGAGGATAGGGATACATTCTGAGAATTGTGTCC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000522439.1 |
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| 3UTR-3UTR CCA 90 bp | AAAACAGTGTATAAAGGTTTGGTACTGTTTGAGGTTTCAGGAGTTCACTGGGGGTACAACAATCAGAAATaGGAAGAGAGCAAATCCAAG | + |
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Preference number: 2 (lower is better) Translates to: KTVYKGLVLFEVSGVHWGYNNQK*EESKSK Trigger: CTTGGATTTGCTCTCTTCCCATTTCTGATTGTTGTA...CCCCCAGTGAACTCCTGAAACCTCAAACAGTACCAAACCTTTATACACTGTTTT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000353107.8 |
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| 3UTR CCA 72 bp | GTACTGTTTGAGGTTTCAGGAGTTCACTGGGGGCCTTaGAATGTATCTCCCGAAGATAAGGGGGAACTACTG | + |
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Preference number: 3 (lower is better) Translates to: VLFEVSGVHWGP*NVSPEDKGELL Trigger: CAGTAGTTCCCCCTTATCTTCGGGAGATACATTCCAAGGCCCCCAGTGAACTCCTGAAACCTCAAACAGTAC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENST00000353107.8 |
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| 3UTR CCA 72 bp | AAAGGTTTGGTACTGTTTGAGGTTTCAGGAGTTCACTaGGGGCCTTGGAATGTATCTCCCGAAGATAAGGGG | + |
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Preference number: 3 (lower is better) Translates to: KGLVLFEVSGVH*GPWNVSPEDKG Trigger: CCCCTTATCTTCGGGAGATACATTCCAAGGCCCCCAGTGAACTCCTGAAACCTCAAACAGTACCAAACCTTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000353107.8 |
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| 3UTR-3UTR CAA 90 bp | GGACACAATTCTCAGAATGTATCCCTATCCTCAAGCTTGACTGCACAGAATCCCTTTAGAGCCTATGCATaGGTCCATGAAAATGCTAAT | + |
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Preference number: 3 (lower is better) Translates to: GHNSQNVSLSSSLTAQNPFRAYA*VHENAN Trigger: ATTAGCATTTTCATGGACCAATGCATAGGCTCTAAA...GGGATTCTGTGCAGTCAAGCTTGAGGATAGGGATACATTCTGAGAATTGTGTCC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000522439.1 |
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| 3UTR-3UTR CAA 90 bp | TCCCTTTCTGTGGTTTTGGTTACCTGTAGTCAACCACATTCTAAAATAGGTGAGAAGGTTTGGTACTGTTaGAGGTTTCAGGAGTTCACT | + |
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Preference number: 3 (lower is better) Translates to: SLSVVLVTCSQPHSKIGEKVWYC*RFQEFT Trigger: AGTGAACTCCTGAAACCTCAAACAGTACCAAACCTT...CTCACCTATTTTAGAATGTGGTTGACTACAGGTAACCAAAACCACAGAAAGGGA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000353107.8 |
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| CDS-3UTR TCA 90 bp | CAGGAGTTCACTGGGGGCCTTGGAATGTATCTCCCGAAGATAAGGGGGAACTACTACAAGAAGATATTTTaGAAGCAAGAGAGACCAACC | + |
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Preference number: 4 (lower is better) Translates to: QEFTGGLGMYLPKIRGNYYKKIF*KQERPT Trigger: GGTTGGTCTCTCTTGCTTTCAAAATATCTTCTTGTA...GTAGTTCCCCCTTATCTTCGGGAGATACATTCCAAGGCCCCCAGTGAACTCCTG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENST00000353107.8 |
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| CDS-3UTR CCA 90 bp | GGACACAATTCTCAGAATGTATCCCTATCCTCAAGCTTGACTGCACAGAATCCCCATTGGTTGCTGCTTTaGAGGTTGAACGTCCTTCTG | + |
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Preference number: 4 (lower is better) Translates to: GHNSQNVSLSSSLTAQNPHWLLL*RLNVLL Trigger: CAGAAGGACGTTCAACCTCCAAAGCAGCAACCAATG...GGGATTCTGTGCAGTCAAGCTTGAGGATAGGGATACATTCTGAGAATTGTGTCC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000522439.1 |
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| CDS-3UTR TCA 90 bp | TGTATAAAGGTTTGGTACTGTTTGAGGTTTCAGGAGTTCACTGGGGGCCTTGGAAGGTTTGGTACTGTTTaGGGTTTCAGGAGTTCACTG | + |
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Preference number: 4 (lower is better) Translates to: CIKVWYCLRFQEFTGGLGRFGTV*GFRSSL Trigger: CAGTGAACTCCTGAAACCTCAAACAGTACCAAACCT...TCCAAGGCCCCCAGTGAACTCCTGAAACCTCAAACAGTACCAAACCTTTATACA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000353107.8 |
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| CDS-3UTR CCA 90 bp | AAAACAGTGTATAAAGGTTTGGTACTGTTTGAGGTTTCAGGAGTTCACTGGGGGGTTCACTGGGGGCCTTaGAATGTATCTCCCGAAGAT | + |
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Preference number: 4 (lower is better) Translates to: KTVYKGLVLFEVSGVHWGVHWGP*NVSPED Trigger: ATCTTCGGGAGATACATTCCAAGGCCCCCAGTGAAC...CCCCCAGTGAACTCCTGAAACCTCAAACAGTACCAAACCTTTATACACTGTTTT 46% GC, longest homopolymer 6 nt, total homopolymer stretches 15 nt. Matches the following 1 transcripts: ENST00000353107.8 |
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| CDS-3UTR CCA 90 bp | TACTGTTTGAGGTTTCAGGAGTTCACTGGGGGCCTTGGAATGTATCTCCCGAAGTACAACAATCAGAAATaGGAAGAGAGCAAATCCAAG | + |
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Preference number: 4 (lower is better) Translates to: YCLRFQEFTGGLGMYLPKYNNQK*EESKSK Trigger: CTTGGATTTGCTCTCTTCCCATTTCTGATTGTTGTA...CTTCGGGAGATACATTCCAAGGCCCCCAGTGAACTCCTGAAACCTCAAACAGTA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000353107.8 |
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| CDS-3UTR CCA 90 bp | TATCTCCCGAAGATAAGGGGGAACTACTGTAAGCAAAATCGAAAGCTATACAACCATTGGTTGCTGCTTTaGAGGTTGAACGTCCTTCTG | + |
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Preference number: 4 (lower is better) Translates to: YLPKIRGNYCKQNRKLYNHWLLL*RLNVLL Trigger: CAGAAGGACGTTCAACCTCCAAAGCAGCAACCAATG...GTTGTATAGCTTTCGATTTTGCTTACAGTAGTTCCCCCTTATCTTCGGGAGATA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000353107.8 |
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| CDS-3UTR CCA 90 bp | TATCTCCCGAAGATAAGGGGGAACTACTGTAAGCAAAATCGAAAGCTATACAACCCCTTTCTGTGGTTTTaGTTACCTGTAGTCAACCAC | + |
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Preference number: 4 (lower is better) Translates to: YLPKIRGNYCKQNRKLYNPFLWF*LPVVNH Trigger: GTGGTTGACTACAGGTAACCAAAACCACAGAAAGGG...GTTGTATAGCTTTCGATTTTGCTTACAGTAGTTCCCCCTTATCTTCGGGAGATA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENST00000353107.8 |
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| CDS-3UTR GCA 90 bp | AAAACAGTGTATAAAGGTTTGGTACTGTTTGAGGTTTCAGGAGTTCACTGGGGGAGGGTTCTAGAAACCTaGATTTTTAACAAGGACTGC | + |
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Preference number: 4 (lower is better) Translates to: KTVYKGLVLFEVSGVHWGRVLET*IFNKDC Trigger: GCAGTCCTTGTTAAAAATGCAGGTTTCTAGAACCCT...CCCCCAGTGAACTCCTGAAACCTCAAACAGTACCAAACCTTTATACACTGTTTT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENST00000353107.8 |
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| CDS-3UTR CCA 90 bp | AGGACACAATTCTCAGAATGTATCCCTATCCTCAAGCTTGACTGCACAGAATCCTTAGAGCCTATGCATTaGTCCATGAAAATGCTAATC | + |
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Preference number: 4 (lower is better) Translates to: RTQFSECIPILKLDCTESLEPMH*SMKMLI Trigger: GATTAGCATTTTCATGGACCAATGCATAGGCTCTAA...GGATTCTGTGCAGTCAAGCTTGAGGATAGGGATACATTCTGAGAATTGTGTCCT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000522439.1 |
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| CDS-3UTR CAA 90 bp | TACTGTTTGAGGTTTCAGGAGTTCACTGGGGGCCTTGGAATGTATCTCCCGAAGTCATTGGTTGCTGCTTaGGAGGTTGAACGTCCTTCT | + |
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Preference number: 5 (lower is better) Translates to: YCLRFQEFTGGLGMYLPKSLVAA*EVERPS Trigger: AGAAGGACGTTCAACCTCCAAAGCAGCAACCAATGA...CTTCGGGAGATACATTCCAAGGCCCCCAGTGAACTCCTGAAACCTCAAACAGTA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000353107.8 |
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| CDS-3UTR CAA 90 bp | TACTGTTTGAGGTTTCAGGAGTTCACTGGGGGCCTTGGAATGTATCTCCCGAAGTCCCTTTCTGTGGTTTaGGTTACCTGTAGTCAACCA | + |
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Preference number: 5 (lower is better) Translates to: YCLRFQEFTGGLGMYLPKSLSVV*VTCSQP Trigger: TGGTTGACTACAGGTAACCAAAACCACAGAAAGGGA...CTTCGGGAGATACATTCCAAGGCCCCCAGTGAACTCCTGAAACCTCAAACAGTA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000353107.8 |
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| CDS-3UTR CAA 90 bp | TGTATAAAGGTTTGGTACTGTTTGAGGTTTCAGGAGTTCACTGGGGGCCTTGGAAAGGTTTGGTACTGTTaGAGGTTTCAGGAGTTCACT | + |
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Preference number: 5 (lower is better) Translates to: CIKVWYCLRFQEFTGGLGKVWYC*RFQEFT Trigger: AGTGAACTCCTGAAACCTCAAACAGTACCAAACCTT...TCCAAGGCCCCCAGTGAACTCCTGAAACCTCAAACAGTACCAAACCTTTATACA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000353107.8 |
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| CDS-3UTR CAA 90 bp | GTTTCTGTAGGAATGATGAAATTGCTTAAGGACACAATTCTCAGAATGTATCCCTCATTGGTTGCTGCTTaGGAGGTTGAACGTCCTTCT | + |
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Preference number: 5 (lower is better) Translates to: VSVGMMKLLKDTILRMYPSLVAA*EVERPS Trigger: AGAAGGACGTTCAACCTCCAAAGCAGCAACCAATGA...GGGATACATTCTGAGAATTGTGTCCTTAAGCAATTTCATCATTCCTACAGAAAC 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000522439.1 |
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| CDS-3UTR CAA 90 bp | GTTTCTGTAGGAATGATGAAATTGCTTAAGGACACAATTCTCAGAATGTATCCCTTTAGAGCCTATGCATaGGTCCATGAAAATGCTAAT | + |
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Preference number: 5 (lower is better) Translates to: VSVGMMKLLKDTILRMYPFRAYA*VHENAN Trigger: ATTAGCATTTTCATGGACCAATGCATAGGCTCTAAA...GGGATACATTCTGAGAATTGTGTCCTTAAGCAATTTCATCATTCCTACAGAAAC 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000522439.1 |
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| CDS-3UTR CAA 90 bp | GTTTCTGTAGGAATGATGAAATTGCTTAAGGACACAATTCTCAGAATGTATCCCGTAGGAATGATGAAATaGCTTAAGGACACAATTCTC | + |
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Preference number: 5 (lower is better) Translates to: VSVGMMKLLKDTILRMYPVGMMK*LKDTIL Trigger: GAGAATTGTGTCCTTAAGCAATTTCATCATTCCTAC...GGGATACATTCTGAGAATTGTGTCCTTAAGCAATTTCATCATTCCTACAGAAAC 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000522439.1 |
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