Pregenerated sensors for POLR2J2 (Homo sapiens)
Ensembl gene IDs: ENSG00000228049Ensembl transcript IDs: ENST00000358438.6
Found 24 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | TTCAGAAGAATCTTGCCAGGGAAGACTGGTAAATGGACGTCAACGTaGTGCCTATGGCTCCTGGTGGATTTAGATACCTCCTGGTGCTTA | + |
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Preference number: 1 (lower is better) Translates to: FRRILPGKTGKWTST*CLWLLVDLDTSWCL Trigger: TAAGCACCAGGAGGTATCTAAATCCACCAGGAGCCATAGGCATCACGTTGACGTCCATTTACCAGTCTTCCCTGGCAAGATTCTTCTGAA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000358438.6 |
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| 3UTR-3UTR GCA 90 bp | GACGTCAACGTGATGCCTATGGCTCCTGGTGGATTTAGATACCTCCTGGTGCTTGCCTCGGCTTTTCTTTaGTGTGGCTCTTTCCCCTCT | + |
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Preference number: 2 (lower is better) Translates to: DVNVMPMAPGGFRYLLVLASAFL*CGSFPS Trigger: AGAGGGGAAAGAGCCACAGCAAAGAAAAGCCGAGGC...AAGCACCAGGAGGTATCTAAATCCACCAGGAGCCATAGGCATCACGTTGACGTC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000358438.6 |
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| 3UTR-3UTR GCA 90 bp | GACGTCAACGTGATGCCTATGGCTCCTGGTGGATTTAGATACCTCCTGGTGCTTACACTGAGGGGACTGTaGGGTCACCAATACCTCCTA | + |
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Preference number: 2 (lower is better) Translates to: DVNVMPMAPGGFRYLLVLTLRGL*GHQYLL Trigger: TAGGAGGTATTGGTGACCGCACAGTCCCCTCAGTGT...AAGCACCAGGAGGTATCTAAATCCACCAGGAGCCATAGGCATCACGTTGACGTC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000358438.6 |
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| 3UTR-3UTR GCA 90 bp | GACGTCAACGTGATGCCTATGGCTCCTGGTGGATTTAGATACCTCCTGGTGCTTATTGACTCACAGTTCTaGAGGCTGTACAGGAAGCGT | + |
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Preference number: 2 (lower is better) Translates to: DVNVMPMAPGGFRYLLVLIDSQF*RLYRKR Trigger: ACGCTTCCTGTACAGCCTGCAGAACTGTGAGTCAAT...AAGCACCAGGAGGTATCTAAATCCACCAGGAGCCATAGGCATCACGTTGACGTC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000358438.6 |
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| 3UTR-3UTR TCA 90 bp | GACGTCAACGTGATGCCTATGGCTCCTGGTGGATTTAGATACCTCCTGGTGCTTCTGGGAATTACAATTTaGCATGAGATTTGGGTGTGG | + |
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Preference number: 2 (lower is better) Translates to: DVNVMPMAPGGFRYLLVLLGITI*HEIWVW Trigger: CCACACCCAAATCTCATGTCAAATTGTAATTCCCAG...AAGCACCAGGAGGTATCTAAATCCACCAGGAGCCATAGGCATCACGTTGACGTC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000358438.6 |
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| 3UTR-3UTR GCA 90 bp | GACGTCAACGTGATGCCTATGGCTCCTGGTGGATTTAGATACCTCCTGGTGCTTACCAATACCTCCTATTaGACTTGGATAAACACCTCC | + |
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Preference number: 2 (lower is better) Translates to: DVNVMPMAPGGFRYLLVLTNTSY*TWINTS Trigger: GGAGGTGTTTATCCAAGTGCAATAGGAGGTATTGGT...AAGCACCAGGAGGTATCTAAATCCACCAGGAGCCATAGGCATCACGTTGACGTC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000358438.6 |
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| 3UTR TCA 72 bp | TGTACAGGAAGCGTGGCTGGGGAGGCCTCAGGAAACTaGCAATCACGGCAGAAGGCGAAGGGGAAGCAGGCA | + |
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Preference number: 3 (lower is better) Translates to: CTGSVAGEASGN*QSRQKAKGKQA Trigger: TGCCTGCTTCCCCTTCGCCTTCTGCCGTGATTGTCAGTTTCCTGAGGCCTCCCCAGCCACGCTTCCTGTACA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000358438.6 |
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| 3UTR CCA 72 bp | GACTCACAGTTCTGCAGGCTGTACAGGAAGCGTGGCTaGGGAGGCCTCAGGAAACTGACAATCACGGCAGAA | + |
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Preference number: 3 (lower is better) Translates to: DSQFCRLYRKRG*GGLRKLTITAE Trigger: TTCTGCCGTGATTGTCAGTTTCCTGAGGCCTCCCCAGCCACGCTTCCTGTACAGCCTGCAGAACTGTGAGTC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000358438.6 |
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| 3UTR CCA 72 bp | GGCCATGTTGGAGCAGGAGAGACAGAGAGAGTGAAGTaGGAGGGCTGCACGCTTTTAAACAACCAGATCCCA | + |
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Preference number: 3 (lower is better) Translates to: GHVGAGETERVK*EGCTLLNNQIP Trigger: TGGGATCTGGTTGTTTAAAAGCGTGCAGCCCTCCCACTTCACTCTCTCTGTCTCTCCTGCTCCAACATGGCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000358438.6 |
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| 3UTR TCA 72 bp | ATCTTGCCAGGGAAGACTGGTAAATGGACGTCAACGTaGTGCCTATGGCTCCTGGTGGATTTAGATACCTCC | + |
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Preference number: 3 (lower is better) Translates to: ILPGKTGKWTST*CLWLLVDLDTS Trigger: GGAGGTATCTAAATCCACCAGGAGCCATAGGCATCACGTTGACGTCCATTTACCAGTCTTCCCTGGCAAGAT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000358438.6 |
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| 3UTR GCA 72 bp | TGCCTATGGCTCCTGGTGGATTTAGATACCTCCTGGTaGTTATTGATATCTTTACCAGTTGCACAGGGGCTT | + |
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Preference number: 3 (lower is better) Translates to: CLWLLVDLDTSW*LLISLPVAQGL Trigger: AAGCCCCTGTGCAACTGGTAAAGATATCAATAAGCACCAGGAGGTATCTAAATCCACCAGGAGCCATAGGCA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000358438.6 |
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| 3UTR CCA 72 bp | GGGGACTGTGCGGTCACCAATACCTCCTATTGCACTTaGATAAACACCTCCCAGGAAATAGAGATGAATAGA | + |
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Preference number: 3 (lower is better) Translates to: GDCAVTNTSYCT*INTSQEIEMNR Trigger: TCTATTCATCTCTATTTCCTGGGAGGTGTTTATCCAAGTGCAATAGGAGGTATTGGTGACCGCACAGTCCCC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000358438.6 |
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| 3UTR GCA 72 bp | CTTCAACTATTTACTAGCAGAACACTGAGGGGACTGTaGGGTCACCAATACCTCCTATTGCACTTGGATAAA | + |
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Preference number: 3 (lower is better) Translates to: LQLFTSRTLRGL*GHQYLLLHLDK Trigger: TTTATCCAAGTGCAATAGGAGGTATTGGTGACCGCACAGTCCCCTCAGTGTTCTGCTAGTAAATAGTTGAAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000358438.6 |
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| CDS-3UTR GCA 90 bp | GACGTCAACGTGATGCCTATGGCTCCTGGTGGATTTAGATACCTCCTGGTGCTTACAGGCACAAGCCACTaGGCCCAGCCCCTCCCATAC | + |
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Preference number: 4 (lower is better) Translates to: DVNVMPMAPGGFRYLLVLTGTSH*AQPLPY Trigger: GTATGGGAGGGGCTGGGCGCAGTGGCTTGTGCCTGT...AAGCACCAGGAGGTATCTAAATCCACCAGGAGCCATAGGCATCACGTTGACGTC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000358438.6 |
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| CDS-3UTR TCA 90 bp | GACGTCAACGTGATGCCTATGGCTCCTGGTGGATTTAGATACCTCCTGGTGCTTCTGGTCTTGAACTCCTaGCCTCGTGATCACCCTGCC | + |
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Preference number: 4 (lower is better) Translates to: DVNVMPMAPGGFRYLLVLLVLNS*PRDHPA Trigger: GGCAGGGTGATCACGAGGTCAGGAGTTCAAGACCAG...AAGCACCAGGAGGTATCTAAATCCACCAGGAGCCATAGGCATCACGTTGACGTC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000358438.6 |
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| CDS-3UTR GCA 90 bp | GACGTCAACGTGATGCCTATGGCTCCTGGTGGATTTAGATACCTCCTGGTGCTTACGATCTCAGCTCACTaGCACCTCCTCCTCCCAGGT | + |
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Preference number: 4 (lower is better) Translates to: DVNVMPMAPGGFRYLLVLTISAH*HLLLPG Trigger: ACCTGGGAGGAGGAGGTGGCAGTGAGCTGAGATCGT...AAGCACCAGGAGGTATCTAAATCCACCAGGAGCCATAGGCATCACGTTGACGTC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000358438.6 |
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| CDS-3UTR GCA 90 bp | GACGTCAACGTGATGCCTATGGCTCCTGGTGGATTTAGATACCTCCTGGTGCTTTTGCCCACGCTGGAGTaGAATGGCACGATCTCAGCT | + |
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Preference number: 4 (lower is better) Translates to: DVNVMPMAPGGFRYLLVLLPTLE*NGTISA Trigger: AGCTGAGATCGTGCCATTGCACTCCAGCGTGGGCAA...AAGCACCAGGAGGTATCTAAATCCACCAGGAGCCATAGGCATCACGTTGACGTC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000358438.6 |
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| CDS-3UTR TCA 90 bp | GACGTCAACGTGATGCCTATGGCTCCTGGTGGATTTAGATACCTCCTGGTGCTTGTGTGGATACAGAGCTaGACCATGTCAAGGGTAGTT | + |
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Preference number: 4 (lower is better) Translates to: DVNVMPMAPGGFRYLLVLVWIQS*TMSRVV Trigger: AACTACCCTTGACATGGTTCAGCTCTGTATCCACAC...AAGCACCAGGAGGTATCTAAATCCACCAGGAGCCATAGGCATCACGTTGACGTC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000358438.6 |
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| CDS-3UTR TCA 90 bp | GACGTCAACGTGATGCCTATGGCTCCTGGTGGATTTAGATACCTCCTGGTGCTTCCTCCTGGTGCTTATTaGTATCTTTACCAGTTGCAC | + |
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Preference number: 4 (lower is better) Translates to: DVNVMPMAPGGFRYLLVLPPGAY*YLYQLH Trigger: GTGCAACTGGTAAAGATATCAATAAGCACCAGGAGG...AAGCACCAGGAGGTATCTAAATCCACCAGGAGCCATAGGCATCACGTTGACGTC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000358438.6 |
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| 3UTR CAA 72 bp | ACACTGAGGGGACTGTGCGGTCACCAATACCTCCTATaGCACTTGGATAAACACCTCCCAGGAAATAGAGAT | + |
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Preference number: 4 (lower is better) Translates to: TLRGLCGHQYLL*HLDKHLPGNRD Trigger: ATCTCTATTTCCTGGGAGGTGTTTATCCAAGTGCAATAGGAGGTATTGGTGACCGCACAGTCCCCTCAGTGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000358438.6 |
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| CDS-3UTR TCA 90 bp | GACGTCAACGTGATGCCTATGGCTCCTGGTGGATTTAGATACCTCCTGGTGCTTGAAAAGAGGTTTAATTaGCTCACAGTTCTGCAGGCT | + |
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Preference number: 4 (lower is better) Translates to: DVNVMPMAPGGFRYLLVLEKRFN*LTVLQA Trigger: AGCCTGCAGAACTGTGAGTCAATTAAACCTCTTTTC...AAGCACCAGGAGGTATCTAAATCCACCAGGAGCCATAGGCATCACGTTGACGTC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000358438.6 |
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| CDS-3UTR TCA 90 bp | GACGTCAACGTGATGCCTATGGCTCCTGGTGGATTTAGATACCTCCTGGTGCTTTTTTCCATGCCAGACTaGAAACGCAGAAGATCAATG | + |
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Preference number: 4 (lower is better) Translates to: DVNVMPMAPGGFRYLLVLFSMPD*KRRRSM Trigger: CATTGATCTTCTGCGTTTTCAGTCTGGCATGGAAAA...AAGCACCAGGAGGTATCTAAATCCACCAGGAGCCATAGGCATCACGTTGACGTC 48% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt. Matches the following 1 transcripts: ENST00000358438.6 |
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| CDS-3UTR GCA 90 bp | GACGTCAACGTGATGCCTATGGCTCCTGGTGGATTTAGATACCTCCTGGTGCTTAATTCAGAAGAATCTTaGCAGGGAAGACTGGTAAAT | + |
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Preference number: 4 (lower is better) Translates to: DVNVMPMAPGGFRYLLVLNSEES*QGRLVN Trigger: ATTTACCAGTCTTCCCTGGCAAGATTCTTCTGAATT...AAGCACCAGGAGGTATCTAAATCCACCAGGAGCCATAGGCATCACGTTGACGTC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000358438.6 |
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| CDS-3UTR GCA 90 bp | GACGTCAACGTGATGCCTATGGCTCCTGGTGGATTTAGATACCTCCTGGTGCTTTTAGATACCTCCTGGTaGTTATTGATATCTTTACCA | + |
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Preference number: 4 (lower is better) Translates to: DVNVMPMAPGGFRYLLVLLDTSW*LLISLP Trigger: TGGTAAAGATATCAATAAGCACCAGGAGGTATCTAA...AAGCACCAGGAGGTATCTAAATCCACCAGGAGCCATAGGCATCACGTTGACGTC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000358438.6 |
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