RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for PNPLA4 (Homo sapiens)

Ensembl gene IDs: ENSG00000006757

Ensembl transcript IDs: ENST00000381042.9, ENST00000442940.1, ENST00000444736.5, ENST00000537427.5

Found 235 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp CCCACAATTGCCACACGTTGTGGGAGGGACCCAGTGGGAGGTAACTaGATCATGGAGGCAGGTCTTTCCCATGCTATTCTCATGATAGTG +
Preference number: 1 (lower is better)
Translates to: PTIATRCGRDPVGGN*IMEAGLSHAILMIV
Trigger: CACTATCATGAGAATAGCATGGGAAAGACCTGCCTCCATGATTCAGTTACCTCCCACTGGGTCCCTCCCACAACGTGTGGCAATTGTGGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000381042.9
ENST00000444736.5
ENST00000537427.5
3UTR GCA 90 bp TTCCCTGCACAAGTTTTCTTCTCTTGTCTGCTGCCATGTGAGACATaGCTTTCACCTTCCACCACAATTGTGAGGCCTCCTCAGTCATGT +
Preference number: 1 (lower is better)
Translates to: FPAQVFFSCLLPCET*LSPSTTIVRPPQSC
Trigger: ACATGACTGAGGAGGCCTCACAATTGTGGTGGAAGGTGAAAGGCATGTCTCACATGGCAGCAGACAAGAGAAGAAAACTTGTGCAGGGAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000381042.9
ENST00000444736.5
ENST00000537427.5
3UTR TCA 90 bp GGCAGATCCTGTTGTGAATGCCTGTTTTCAATTAGTATGGCTGCATaGGCACACACTCCAGCAAAGGTAAGCAGAGCATGCTTGGTAGCA +
Preference number: 1 (lower is better)
Translates to: GRSCCECLFSISMAA*AHTPAKVSRACLVA
Trigger: TGCTACCAAGCATGCTCTGCTTACCTTTGCTGGAGTGTGTGCTCATGCAGCCATACTAATTGAAAACAGGCATTCACAACAGGATCTGCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000381042.9
3UTR CCA 90 bp ATGCCTTTCACCTTCCACCACAATTGTGAGGCCTCCTCAGTCATGTaGAACTGTGAGCCCATTAAACCTTTCTTTTGTAAATTGCCCAGT +
Preference number: 1 (lower is better)
Translates to: MPFTFHHNCEASSVM*NCEPIKPFFCKLPS
Trigger: ACTGGGCAATTTACAAAAGAAAGGTTTAATGGGCTCACAGTTCCACATGACTGAGGAGGCCTCACAATTGTGGTGGAAGGTGAAAGGCAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000381042.9
ENST00000444736.5
ENST00000537427.5
3UTR GCA 90 bp GAAAGTATATACCACAGGGACCATCATTACTCTAGAGTGGGTCTATaGATAACTCCTCAAAAAGAGGCCATCGTTGGTGTTTATGTGCTA +
Preference number: 1 (lower is better)
Translates to: ESIYHRDHHYSRVGL*ITPQKEAIVGVYVL
Trigger: TAGCACATAAACACCAACGATGGCCTCTTTTTGAGGAGTTATGCATAGACCCACTCTAGAGTAATGATGGTCCCTGTGGTATATACTTTC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000381042.9
ENST00000444736.5
ENST00000537427.5
3UTR GCA 90 bp TGCGTGACAATTGAAGACATGGAATTAAATTGGTTTGTCTCTAACTaGCTCTTAGTAATCAAGAGTTCTTGCTTGGCAAAACCTCATAAA +
Preference number: 1 (lower is better)
Translates to: CVTIEDMELNWFVSN*LLVIKSSCLAKPHK
Trigger: TTTATGAGGTTTTGCCAAGCAAGAACTCTTGATTACTAAGAGGCAGTTAGAGACAAACCAATTTAATTCCATGTCTTCAATTGTCACGCA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000381042.9
ENST00000444736.5
ENST00000537427.5
3UTR CAA 90 bp GCAAAGGTAAGCAGAGCATGCTTGGTAGCATGCTCACAGGAGAATTaGGTGCACCAGCCCCGGAGAGCGCCTAGTGTGCACCAAGTATGT +
Preference number: 2 (lower is better)
Translates to: AKVSRACLVACSQEN*VHQPRRAPSVHQVC
Trigger: ACATACTTGGTGCACACTAGGCGCTCTCCGGGGCTGGTGCACCAAATTCTCCTGTGAGCATGCTACCAAGCATGCTCTGCTTACCTTTGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000381042.9
3UTR-3UTR CCA 90 bp GCTTCTGGATATCTGCCCCTAACTGCACTGGGAGCAACTGCACACACCTGTGGAGCCACATATTCTCCATaGAACCTAAGTGGTGGCCCT +
Preference number: 2 (lower is better)
Translates to: ASGYLPLTALGATAHTCGATYSP*NLSGGP
Trigger: AGGGCCACCACTTAGGTTCCATGGAGAATATGTGGC...TCCACAGGTGTGTGCAGTTGCTCCCAGTGCAGTTAGGGGCAGATATCCAGAAGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000381042.9
ENST00000444736.5
ENST00000537427.5
3UTR-3UTR GCA 90 bp GCTTCTGGATATCTGCCCCTAACTGCACTGGGAGCAACTGCACACACCTGTGGATCTTCTCTTGTCTGCTaGCATGTGAGACATGCCTTT +
Preference number: 2 (lower is better)
Translates to: ASGYLPLTALGATAHTCGSSLVC*HVRHAF
Trigger: AAAGGCATGTCTCACATGGCAGCAGACAAGAGAAGA...TCCACAGGTGTGTGCAGTTGCTCCCAGTGCAGTTAGGGGCAGATATCCAGAAGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000381042.9
ENST00000444736.5
ENST00000537427.5
3UTR-3UTR GCA 90 bp GCTTCTGGATATCTGCCCCTAACTGCACTGGGAGCAACTGCACACACCTGTGGATTTTCTTCTCTTGTCTaGTGCCATGTGAGACATGCC +
Preference number: 2 (lower is better)
Translates to: ASGYLPLTALGATAHTCGFSSLV*CHVRHA
Trigger: GGCATGTCTCACATGGCAGCAGACAAGAGAAGAAAA...TCCACAGGTGTGTGCAGTTGCTCCCAGTGCAGTTAGGGGCAGATATCCAGAAGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000381042.9
ENST00000444736.5
ENST00000537427.5
3UTR-3UTR GCA 90 bp TACTCTAGAGTGGGTCTATGCATAACTCCTCAAAAAGAGGCCATCGTTGGTGTTTGCACTGGGAGCAACTaGACACACCTGTGGAAAGCA +
Preference number: 2 (lower is better)
Translates to: YSRVGLCITPQKEAIVGVCTGSN*THLWKA
Trigger: TGCTTTCCACAGGTGTGTGCAGTTGCTCCCAGTGCA...AACACCAACGATGGCCTCTTTTTGAGGAGTTATGCATAGACCCACTCTAGAGTA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000381042.9
ENST00000444736.5
ENST00000537427.5
3UTR-3UTR CCA 90 bp AGCAAAGGTAAGCAGAGCATGCTTGGTAGCATGCTCACAGGAGAATTTGGTGCAGCCTCCTCAGTCATGTaGAACTGTGAGCCCATTAAA +
Preference number: 2 (lower is better)
Translates to: SKGKQSMLGSMLTGEFGAASSVM*NCEPIK
Trigger: TTTAATGGGCTCACAGTTCCACATGACTGAGGAGGC...TGCACCAAATTCTCCTGTGAGCATGCTACCAAGCATGCTCTGCTTACCTTTGCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000381042.9
3UTR-3UTR CCA 90 bp AATACTCAGAGAGGTATGGCGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCCTCCTCAGTCATGTaGAACTGTGAGCCCATTAAA +
Preference number: 2 (lower is better)
Translates to: NTQRGMARERERERERERASSVM*NCEPIK
Trigger: TTTAATGGGCTCACAGTTCCACATGACTGAGGAGGC...TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCGCCATACCTCTCTGAGTATT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000381042.9
ENST00000444736.5
ENST00000537427.5
3UTR-3UTR CCA 90 bp AATACTCAGAGAGGTATGGCGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGTAACTGAATCATaGAGGCAGGTCTTTCCCATG +
Preference number: 2 (lower is better)
Translates to: NTQRGMAREREREREREREVTES*RQVFPM
Trigger: CATGGGAAAGACCTGCCTCCATGATTCAGTTACCTC...TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCGCCATACCTCTCTGAGTATT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000381042.9
ENST00000444736.5
ENST00000537427.5
3UTR-3UTR TCA 90 bp GACCATCATTACTCTAGAGTGGGTCTATGCATAACTCCTCAAAAAGAGGCCATCTTTAGGGGAGGAAGATaGGAGGGGATAAGCCTCTTC +
Preference number: 2 (lower is better)
Translates to: DHHYSRVGLCITPQKEAIFRGGR*EGISLF
Trigger: GAAGAGGCTTATCCCCTCTCATCTTCCTCCCCTAAA...GATGGCCTCTTTTTGAGGAGTTATGCATAGACCCACTCTAGAGTAATGATGGTC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENST00000381042.9
ENST00000444736.5
ENST00000537427.5
3UTR-3UTR GCA 90 bp GCCAGTTCTACAATGCCTCAAAATTTTGATCCCACAAGTGAGGCAGATCCTGTTCTGCCATGTGAGACATaGCTTTCACCTTCCACCACA +
Preference number: 2 (lower is better)
Translates to: ASSTMPQNFDPTSEADPVLPCET*LSPSTT
Trigger: TGTGGTGGAAGGTGAAAGGCATGTCTCACATGGCAG...AACAGGATCTGCCTCACTTGTGGGATCAAAATTTTGAGGCATTGTAGAACTGGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000381042.9
3UTR-3UTR GCA 90 bp AATACTCAGAGAGGTATGGCGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATCTTCTCTTGTCTGCTaGCATGTGAGACATGCCTTT +
Preference number: 2 (lower is better)
Translates to: NTQRGMARERERERERERSSLVC*HVRHAF
Trigger: AAAGGCATGTCTCACATGGCAGCAGACAAGAGAAGA...TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCGCCATACCTCTCTGAGTATT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000381042.9
ENST00000444736.5
ENST00000537427.5
3UTR-3UTR GCA 90 bp GAGAGAGAGAGAGAGAGAGAGAGAATGAATGACAACCAGCTTGATAATCTCCTATGTAGCTCCCACAATTaGCACACGTTGTGGGAGGGA +
Preference number: 2 (lower is better)
Translates to: ERERERERMNDNQLDNLLCSSHN*HTLWEG
Trigger: TCCCTCCCACAACGTGTGGCAATTGTGGGAGCTACA...TAGGAGATTATCAAGCTGGTTGTCATTCATTCTCTCTCTCTCTCTCTCTCTCTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000381042.9
ENST00000444736.5
ENST00000537427.5
3UTR-3UTR GCA 90 bp GACCATCATTACTCTAGAGTGGGTCTATGCATAACTCCTCAAAAAGAGGCCATCATATCTGCCCCTAACTaGACTGGGAGCAACTGCACA +
Preference number: 2 (lower is better)
Translates to: DHHYSRVGLCITPQKEAIISAPN*TGSNCT
Trigger: TGTGCAGTTGCTCCCAGTGCAGTTAGGGGCAGATAT...GATGGCCTCTTTTTGAGGAGTTATGCATAGACCCACTCTAGAGTAATGATGGTC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000381042.9
ENST00000444736.5
ENST00000537427.5
3UTR-3UTR CCA 90 bp CTATTTCTCAAATCCTTCCTCTCCTACCTAGTTCCTTCAGTTCCAGAGCTACAGGCCACATATTCTCCATaGAACCTAAGTGGTGGCCCT +
Preference number: 2 (lower is better)
Translates to: LFLKSFLSYLVPSVPELQATYSP*NLSGGP
Trigger: AGGGCCACCACTTAGGTTCCATGGAGAATATGTGGC...CTGTAGCTCTGGAACTGAAGGAACTAGGTAGGAGAGGAAGGATTTGAGAAATAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000381042.9
ENST00000444736.5
ENST00000537427.5
3UTR-3UTR GCA 90 bp GAGAGAGAGAGAGAGAGAGAGAGAATGAATGACAACCAGCTTGATAATCTCCTACTGCCATGTGAGACATaGCTTTCACCTTCCACCACA +
Preference number: 2 (lower is better)
Translates to: ERERERERMNDNQLDNLLLPCET*LSPSTT
Trigger: TGTGGTGGAAGGTGAAAGGCATGTCTCACATGGCAG...TAGGAGATTATCAAGCTGGTTGTCATTCATTCTCTCTCTCTCTCTCTCTCTCTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000381042.9
ENST00000444736.5
ENST00000537427.5
3UTR-3UTR GCA 90 bp GAAATTGCCCCCACAGGGAATTGGGAATTTATCAAGCTGCCAATCACAGTAATTATATCTGCCCCTAACTaGACTGGGAGCAACTGCACA +
Preference number: 2 (lower is better)
Translates to: EIAPTGNWEFIKLPITVIISAPN*TGSNCT
Trigger: TGTGCAGTTGCTCCCAGTGCAGTTAGGGGCAGATAT...AATTACTGTGATTGGCAGCTTGATAAATTCCCAATTCCCTGTGGGGGCAATTTC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000381042.9
3UTR-3UTR GCA 90 bp GACCATCATTACTCTAGAGTGGGTCTATGCATAACTCCTCAAAAAGAGGCCATCTCTTCTCTTGTCTGCTaGCATGTGAGACATGCCTTT +
Preference number: 2 (lower is better)
Translates to: DHHYSRVGLCITPQKEAISSLVC*HVRHAF
Trigger: AAAGGCATGTCTCACATGGCAGCAGACAAGAGAAGA...GATGGCCTCTTTTTGAGGAGTTATGCATAGACCCACTCTAGAGTAATGATGGTC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000381042.9
ENST00000444736.5
ENST00000537427.5
3UTR-3UTR GCA 90 bp TACTCTAGAGTGGGTCTATGCATAACTCCTCAAAAAGAGGCCATCGTTGGTGTTTTTTCTTCTCTTGTCTaGTGCCATGTGAGACATGCC +
Preference number: 2 (lower is better)
Translates to: YSRVGLCITPQKEAIVGVFSSLV*CHVRHA
Trigger: GGCATGTCTCACATGGCAGCAGACAAGAGAAGAAAA...AACACCAACGATGGCCTCTTTTTGAGGAGTTATGCATAGACCCACTCTAGAGTA
44% GC, longest homopolymer 6 nt, total homopolymer stretches 11 nt.
Matches the following 3 transcripts:
ENST00000381042.9
ENST00000444736.5
ENST00000537427.5
3UTR-3UTR GCA 90 bp GACCATCATTACTCTAGAGTGGGTCTATGCATAACTCCTCAAAAAGAGGCCATCTTTTCTTCTCTTGTCTaGTGCCATGTGAGACATGCC +
Preference number: 2 (lower is better)
Translates to: DHHYSRVGLCITPQKEAIFSSLV*CHVRHA
Trigger: GGCATGTCTCACATGGCAGCAGACAAGAGAAGAAAA...GATGGCCTCTTTTTGAGGAGTTATGCATAGACCCACTCTAGAGTAATGATGGTC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000381042.9
ENST00000444736.5
ENST00000537427.5
3UTR-3UTR GCA 90 bp AATTTTGATCCCACAAGTGAGGCAGATCCTGTTGTGAATGCCTGTTTTCAATTATGTAGCTCCCACAATTaGCACACGTTGTGGGAGGGA +
Preference number: 2 (lower is better)
Translates to: NFDPTSEADPVVNACFQLCSSHN*HTLWEG
Trigger: TCCCTCCCACAACGTGTGGCAATTGTGGGAGCTACA...TAATTGAAAACAGGCATTCACAACAGGATCTGCCTCACTTGTGGGATCAAAATT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000381042.9
3UTR-3UTR GCA 90 bp ATGCATAACTCCTCAAAAAGAGGCCATCGTTGGTGTTTATGTGCTAAAAGTTGTTGCACTGGGAGCAACTaGACACACCTGTGGAAAGCA +
Preference number: 2 (lower is better)
Translates to: MHNSSKRGHRWCLCAKSCCTGSN*THLWKA
Trigger: TGCTTTCCACAGGTGTGTGCAGTTGCTCCCAGTGCA...ACAACTTTTAGCACATAAACACCAACGATGGCCTCTTTTTGAGGAGTTATGCAT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000381042.9
ENST00000444736.5
ENST00000537427.5
3UTR-3UTR CCA 90 bp GAGAGAGAGAGAGAGAGAGAGAGAATGAATGACAACCAGCTTGATAATCTCCTAGAGGTAACTGAATCATaGAGGCAGGTCTTTCCCATG +
Preference number: 2 (lower is better)
Translates to: ERERERERMNDNQLDNLLEVTES*RQVFPM
Trigger: CATGGGAAAGACCTGCCTCCATGATTCAGTTACCTC...TAGGAGATTATCAAGCTGGTTGTCATTCATTCTCTCTCTCTCTCTCTCTCTCTC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000381042.9
ENST00000444736.5
ENST00000537427.5
3UTR-3UTR CCA 90 bp GAAATTGCCCCCACAGGGAATTGGGAATTTATCAAGCTGCCAATCACAGTAATTATACTCAGAGAGGTATaGCGAGAGAGAGAGAGAGAG +
Preference number: 2 (lower is better)
Translates to: EIAPTGNWEFIKLPITVIILREV*RERERE
Trigger: CTCTCTCTCTCTCTCTCGCCATACCTCTCTGAGTAT...AATTACTGTGATTGGCAGCTTGATAAATTCCCAATTCCCTGTGGGGGCAATTTC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000381042.9
3UTR-3UTR TCA 90 bp AGCAAAGGTAAGCAGAGCATGCTTGGTAGCATGCTCACAGGAGAATTTGGTGCAAGTGGACATAACAATTaGGAATCTATCCACTTCATG +
Preference number: 2 (lower is better)
Translates to: SKGKQSMLGSMLTGEFGASGHNN*ESIHFM
Trigger: CATGAAGTGGATAGATTCTCAATTGTTATGTCCACT...TGCACCAAATTCTCCTGTGAGCATGCTACCAAGCATGCTCTGCTTACCTTTGCT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000381042.9
3UTR-3UTR CCA 90 bp ATTTATCAAGCTGCCAATCACAGTAATTACCCTGCAAACATATCAGTATCTGGGGCCACATATTCTCCATaGAACCTAAGTGGTGGCCCT +
Preference number: 2 (lower is better)
Translates to: IYQAANHSNYPANISVSGATYSP*NLSGGP
Trigger: AGGGCCACCACTTAGGTTCCATGGAGAATATGTGGC...CCCAGATACTGATATGTTTGCAGGGTAATTACTGTGATTGGCAGCTTGATAAAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000381042.9
3UTR-3UTR CCA 90 bp AGCAAAGGTAAGCAGAGCATGCTTGGTAGCATGCTCACAGGAGAATTTGGTGCATCTCAAGAGATCCGATaGTTTTATAAAGGGGAGTTT +
Preference number: 2 (lower is better)
Translates to: SKGKQSMLGSMLTGEFGASQEIR*FYKGEF
Trigger: AAACTCCCCTTTATAAAACCATCGGATCTCTTGAGA...TGCACCAAATTCTCCTGTGAGCATGCTACCAAGCATGCTCTGCTTACCTTTGCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000381042.9
3UTR-3UTR CCA 90 bp AATACTCAGAGAGGTATGGCGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATCTCAAGAGATCCGATaGTTTTATAAAGGGGAGTTT +
Preference number: 2 (lower is better)
Translates to: NTQRGMARERERERERERSQEIR*FYKGEF
Trigger: AAACTCCCCTTTATAAAACCATCGGATCTCTTGAGA...TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCGCCATACCTCTCTGAGTATT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000381042.9
ENST00000444736.5
ENST00000537427.5
3UTR-3UTR TCA 90 bp TGCGTGACAATTGAAGACATGGAATTAAATTGGTTTGTCTCTAACTGCCTCTTATTTAGGGGAGGAAGATaGGAGGGGATAAGCCTCTTC +
Preference number: 2 (lower is better)
Translates to: CVTIEDMELNWFVSNCLLFRGGR*EGISLF
Trigger: GAAGAGGCTTATCCCCTCTCATCTTCCTCCCCTAAA...TAAGAGGCAGTTAGAGACAAACCAATTTAATTCCATGTCTTCAATTGTCACGCA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000381042.9
ENST00000444736.5
ENST00000537427.5
3UTR-3UTR GCA 90 bp TGCGTGACAATTGAAGACATGGAATTAAATTGGTTTGTCTCTAACTGCCTCTTAATATCTGCCCCTAACTaGACTGGGAGCAACTGCACA +
Preference number: 2 (lower is better)
Translates to: CVTIEDMELNWFVSNCLLISAPN*TGSNCT
Trigger: TGTGCAGTTGCTCCCAGTGCAGTTAGGGGCAGATAT...TAAGAGGCAGTTAGAGACAAACCAATTTAATTCCATGTCTTCAATTGTCACGCA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000381042.9
ENST00000444736.5
ENST00000537427.5
3UTR-3UTR CCA 90 bp AATTTTGATCCCACAAGTGAGGCAGATCCTGTTGTGAATGCCTGTTTTCAATTAAATCTCCTAGGCTTCTaGATATCTGCCCCTAACTGC +
Preference number: 2 (lower is better)
Translates to: NFDPTSEADPVVNACFQLNLLGF*ISAPNC
Trigger: GCAGTTAGGGGCAGATATCCAGAAGCCTAGGAGATT...TAATTGAAAACAGGCATTCACAACAGGATCTGCCTCACTTGTGGGATCAAAATT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000381042.9
3UTR-3UTR CCA 90 bp ATGCATAACTCCTCAAAAAGAGGCCATCGTTGGTGTTTATGTGCTAAAAGTTGTAATCTCCTAGGCTTCTaGATATCTGCCCCTAACTGC +
Preference number: 2 (lower is better)
Translates to: MHNSSKRGHRWCLCAKSCNLLGF*ISAPNC
Trigger: GCAGTTAGGGGCAGATATCCAGAAGCCTAGGAGATT...ACAACTTTTAGCACATAAACACCAACGATGGCCTCTTTTTGAGGAGTTATGCAT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENST00000381042.9
ENST00000444736.5
ENST00000537427.5
3UTR-3UTR CCA 90 bp TGCGTGACAATTGAAGACATGGAATTAAATTGGTTTGTCTCTAACTGCCTCTTATCTCCTAAACTGGGGTaGGGTTTAGGGGAGGAAGAT +
Preference number: 2 (lower is better)
Translates to: CVTIEDMELNWFVSNCLLSPKLG*GLGEED
Trigger: ATCTTCCTCCCCTAAACCCCACCCCAGTTTAGGAGA...TAAGAGGCAGTTAGAGACAAACCAATTTAATTCCATGTCTTCAATTGTCACGCA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000381042.9
ENST00000444736.5
ENST00000537427.5
3UTR-3UTR CCA 90 bp TACTCTAGAGTGGGTCTATGCATAACTCCTCAAAAAGAGGCCATCGTTGGTGTTACAGTGTCAGTAAATTaGTACAAGCCCATACACAAG +
Preference number: 2 (lower is better)
Translates to: YSRVGLCITPQKEAIVGVTVSVN*YKPIHK
Trigger: CTTGTGTATGGGCTTGTACCAATTTACTGACACTGT...AACACCAACGATGGCCTCTTTTTGAGGAGTTATGCATAGACCCACTCTAGAGTA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000381042.9
ENST00000444736.5
ENST00000537427.5
3UTR-3UTR TCA 90 bp GAAATTGCCCCCACAGGGAATTGGGAATTTATCAAGCTGCCAATCACAGTAATTAAAGTTGCTGCAGACTaGTACGTCAATGATCTTACA +
Preference number: 2 (lower is better)
Translates to: EIAPTGNWEFIKLPITVIKVAAD*YVNDLT
Trigger: TGTAAGATCATTGACGTATCAGTCTGCAGCAACTTT...AATTACTGTGATTGGCAGCTTGATAAATTCCCAATTCCCTGTGGGGGCAATTTC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000381042.9
3UTR-3UTR GCA 90 bp TACTCTAGAGTGGGTCTATGCATAACTCCTCAAAAAGAGGCCATCGTTGGTGTTTGGTTTGTCTCTAACTaGCTCTTAGTAATCAAGAGT +
Preference number: 2 (lower is better)
Translates to: YSRVGLCITPQKEAIVGVWFVSN*LLVIKS
Trigger: ACTCTTGATTACTAAGAGGCAGTTAGAGACAAACCA...AACACCAACGATGGCCTCTTTTTGAGGAGTTATGCATAGACCCACTCTAGAGTA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000381042.9
ENST00000444736.5
ENST00000537427.5
3UTR-3UTR GCA 90 bp GACCATCATTACTCTAGAGTGGGTCTATGCATAACTCCTCAAAAAGAGGCCATCTGGTTTGTCTCTAACTaGCTCTTAGTAATCAAGAGT +
Preference number: 2 (lower is better)
Translates to: DHHYSRVGLCITPQKEAIWFVSN*LLVIKS
Trigger: ACTCTTGATTACTAAGAGGCAGTTAGAGACAAACCA...GATGGCCTCTTTTTGAGGAGTTATGCATAGACCCACTCTAGAGTAATGATGGTC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000381042.9
ENST00000444736.5
ENST00000537427.5
3UTR-3UTR CCA 90 bp AAGAAATGCGTGACAATTGAAGACATGGAATTAAATTGGTTTGTCTCTAACTGCTCTCCTAAACTGGGGTaGGGTTTAGGGGAGGAAGAT +
Preference number: 2 (lower is better)
Translates to: KKCVTIEDMELNWFVSNCSPKLG*GLGEED
Trigger: ATCTTCCTCCCCTAAACCCCACCCCAGTTTAGGAGA...GCAGTTAGAGACAAACCAATTTAATTCCATGTCTTCAATTGTCACGCATTTCTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000381042.9
ENST00000444736.5
ENST00000537427.5
3UTR-3UTR TCA 90 bp ATGCATAACTCCTCAAAAAGAGGCCATCGTTGGTGTTTATGTGCTAAAAGTTGTGAGAGAGAGAGAGAATaGATGACAACCAGCTTGATA +
Preference number: 2 (lower is better)
Translates to: MHNSSKRGHRWCLCAKSCERERE*MTTSLI
Trigger: TATCAAGCTGGTTGTCATTCATTCTCTCTCTCTCTC...ACAACTTTTAGCACATAAACACCAACGATGGCCTCTTTTTGAGGAGTTATGCAT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000381042.9
ENST00000444736.5
ENST00000537427.5
3UTR-3UTR CCA 90 bp AAGAAATGCGTGACAATTGAAGACATGGAATTAAATTGGTTTGTCTCTAACTGCAATCTCCTAGGCTTCTaGATATCTGCCCCTAACTGC +
Preference number: 2 (lower is better)
Translates to: KKCVTIEDMELNWFVSNCNLLGF*ISAPNC
Trigger: GCAGTTAGGGGCAGATATCCAGAAGCCTAGGAGATT...GCAGTTAGAGACAAACCAATTTAATTCCATGTCTTCAATTGTCACGCATTTCTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000381042.9
ENST00000444736.5
ENST00000537427.5
3UTR-3UTR CCA 90 bp AAGAAATGCGTGACAATTGAAGACATGGAATTAAATTGGTTTGTCTCTAACTGCATACTCAGAGAGGTATaGCGAGAGAGAGAGAGAGAG +
Preference number: 2 (lower is better)
Translates to: KKCVTIEDMELNWFVSNCILREV*RERERE
Trigger: CTCTCTCTCTCTCTCTCGCCATACCTCTCTGAGTAT...GCAGTTAGAGACAAACCAATTTAATTCCATGTCTTCAATTGTCACGCATTTCTT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000381042.9
ENST00000444736.5
ENST00000537427.5
3UTR-3UTR CCA 90 bp GAAATTGCCCCCACAGGGAATTGGGAATTTATCAAGCTGCCAATCACAGTAATTGACATGGAATTAAATTaGTTTGTCTCTAACTGCCTC +
Preference number: 2 (lower is better)
Translates to: EIAPTGNWEFIKLPITVIDMELN*FVSNCL
Trigger: GAGGCAGTTAGAGACAAACCAATTTAATTCCATGTC...AATTACTGTGATTGGCAGCTTGATAAATTCCCAATTCCCTGTGGGGGCAATTTC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000381042.9
3UTR-3UTR TCA 90 bp TGCGTGACAATTGAAGACATGGAATTAAATTGGTTTGTCTCTAACTGCCTCTTACACAAGTCCTCAAAGTaGTGGACAACTACTCAGAAA +
Preference number: 2 (lower is better)
Translates to: CVTIEDMELNWFVSNCLLHKSSK*WTTTQK
Trigger: TTTCTGAGTAGTTGTCCATCACTTTGAGGACTTGTG...TAAGAGGCAGTTAGAGACAAACCAATTTAATTCCATGTCTTCAATTGTCACGCA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000381042.9
ENST00000444736.5
ENST00000537427.5
3UTR-3UTR GCA 90 bp GAAATTGCCCCCACAGGGAATTGGGAATTTATCAAGCTGCCAATCACAGTAATTTTCAGATTTTCTATATaGCAGTTCTACAATGCCTCA +
Preference number: 2 (lower is better)
Translates to: EIAPTGNWEFIKLPITVIFRFSI*QFYNAS
Trigger: TGAGGCATTGTAGAACTGGCATATAGAAAATCTGAA...AATTACTGTGATTGGCAGCTTGATAAATTCCCAATTCCCTGTGGGGGCAATTTC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000381042.9
3UTR-3UTR TCA 90 bp AAGAAATGCGTGACAATTGAAGACATGGAATTAAATTGGTTTGTCTCTAACTGCCACAAGTCCTCAAAGTaGTGGACAACTACTCAGAAA +
Preference number: 2 (lower is better)
Translates to: KKCVTIEDMELNWFVSNCHKSSK*WTTTQK
Trigger: TTTCTGAGTAGTTGTCCATCACTTTGAGGACTTGTG...GCAGTTAGAGACAAACCAATTTAATTCCATGTCTTCAATTGTCACGCATTTCTT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000381042.9
ENST00000444736.5
ENST00000537427.5
3UTR-3UTR GCA 90 bp ATTTATCAAGCTGCCAATCACAGTAATTACCCTGCAAACATATCAGTATCTGGGCTTTCTTTTGTAAATTaGCCAGTCTTGGGTATGTCT +
Preference number: 2 (lower is better)
Translates to: IYQAANHSNYPANISVSGLSFVN*PVLGMS
Trigger: AGACATACCCAAGACTGGGCAATTTACAAAAGAAAG...CCCAGATACTGATATGTTTGCAGGGTAATTACTGTGATTGGCAGCTTGATAAAT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000381042.9
3UTR-3UTR CCA 90 bp ATGCATAACTCCTCAAAAAGAGGCCATCGTTGGTGTTTATGTGCTAAAAGTTGTTCTCAAGAGATCCGATaGTTTTATAAAGGGGAGTTT +
Preference number: 2 (lower is better)
Translates to: MHNSSKRGHRWCLCAKSCSQEIR*FYKGEF
Trigger: AAACTCCCCTTTATAAAACCATCGGATCTCTTGAGA...ACAACTTTTAGCACATAAACACCAACGATGGCCTCTTTTTGAGGAGTTATGCAT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 3 transcripts:
ENST00000381042.9
ENST00000444736.5
ENST00000537427.5
3UTR-3UTR CCA 90 bp AATTTTGATCCCACAAGTGAGGCAGATCCTGTTGTGAATGCCTGTTTTCAATTAAAAAGAGGCCATCGTTaGTGTTTATGTGCTAAAAGT +
Preference number: 2 (lower is better)
Translates to: NFDPTSEADPVVNACFQLKRGHR*CLCAKS
Trigger: ACTTTTAGCACATAAACACCAACGATGGCCTCTTTT...TAATTGAAAACAGGCATTCACAACAGGATCTGCCTCACTTGTGGGATCAAAATT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENST00000381042.9
3UTR-3UTR GCA 90 bp TGCGTGACAATTGAAGACATGGAATTAAATTGGTTTGTCTCTAACTGCCTCTTACTTTCTTTTGTAAATTaGCCAGTCTTGGGTATGTCT +
Preference number: 2 (lower is better)
Translates to: CVTIEDMELNWFVSNCLLLSFVN*PVLGMS
Trigger: AGACATACCCAAGACTGGGCAATTTACAAAAGAAAG...TAAGAGGCAGTTAGAGACAAACCAATTTAATTCCATGTCTTCAATTGTCACGCA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000381042.9
ENST00000444736.5
ENST00000537427.5
3UTR-3UTR GCA 90 bp AAGAAATGCGTGACAATTGAAGACATGGAATTAAATTGGTTTGTCTCTAACTGCCTTTCTTTTGTAAATTaGCCAGTCTTGGGTATGTCT +
Preference number: 2 (lower is better)
Translates to: KKCVTIEDMELNWFVSNCLSFVN*PVLGMS
Trigger: AGACATACCCAAGACTGGGCAATTTACAAAAGAAAG...GCAGTTAGAGACAAACCAATTTAATTCCATGTCTTCAATTGTCACGCATTTCTT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000381042.9
ENST00000444736.5
ENST00000537427.5
3UTR-3UTR CAA 90 bp TGGTGCACCAGCCCCGGAGAGCGCCTAGTGTGCACCAAGTATGTGTTTCATTACCACAATTGCCACACGTaGTGGGAGGGACCCAGTGGG +
Preference number: 3 (lower is better)
Translates to: WCTSPGERLVCTKYVFHYHNCHT*WEGPSG
Trigger: CCCACTGGGTCCCTCCCACAACGTGTGGCAATTGTG...GTAATGAAACACATACTTGGTGCACACTAGGCGCTCTCCGGGGCTGGTGCACCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000381042.9
3UTR CCA 72 bp CTCCCACAATTGCCACACGTTGTGGGAGGGACCCAGTaGGAGGTAACTGAATCATGGAGGCAGGTCTTTCCC +
Preference number: 3 (lower is better)
Translates to: LPQLPHVVGGTQ*EVTESWRQVFP
Trigger: GGGAAAGACCTGCCTCCATGATTCAGTTACCTCCCACTGGGTCCCTCCCACAACGTGTGGCAATTGTGGGAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000381042.9
ENST00000444736.5
ENST00000537427.5
3UTR TCA 72 bp GCCACACGTTGTGGGAGGGACCCAGTGGGAGGTAACTaGATCATGGAGGCAGGTCTTTCCCATGCTATTCTC +
Preference number: 3 (lower is better)
Translates to: ATRCGRDPVGGN*IMEAGLSHAIL
Trigger: GAGAATAGCATGGGAAAGACCTGCCTCCATGATTCAGTTACCTCCCACTGGGTCCCTCCCACAACGTGTGGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000381042.9
ENST00000444736.5
ENST00000537427.5
3UTR GCA 72 bp ACTCCAGCAAAGGTAAGCAGAGCATGCTTGGTAGCATaGTCACAGGAGAATTTGGTGCACCAGCCCCGGAGA +
Preference number: 3 (lower is better)
Translates to: TPAKVSRACLVA*SQENLVHQPRR
Trigger: TCTCCGGGGCTGGTGCACCAAATTCTCCTGTGAGCATGCTACCAAGCATGCTCTGCTTACCTTTGCTGGAGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000381042.9
3UTR-3UTR CAA 90 bp GACCATCATTACTCTAGAGTGGGTCTATGCATAACTCCTCAAAAAGAGGCCATCCACAATTGCCACACGTaGTGGGAGGGACCCAGTGGG +
Preference number: 3 (lower is better)
Translates to: DHHYSRVGLCITPQKEAIHNCHT*WEGPSG
Trigger: CCCACTGGGTCCCTCCCACAACGTGTGGCAATTGTG...GATGGCCTCTTTTTGAGGAGTTATGCATAGACCCACTCTAGAGTAATGATGGTC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000381042.9
ENST00000444736.5
ENST00000537427.5
3UTR GCA 72 bp CAAAATCTCCTAGGCTTCTGGATATCTGCCCCTAACTaGACTGGGAGCAACTGCACACACCTGTGGAAAGCA +
Preference number: 3 (lower is better)
Translates to: QNLLGFWISAPN*TGSNCTHLWKA
Trigger: TGCTTTCCACAGGTGTGTGCAGTTGCTCCCAGTGCAGTTAGGGGCAGATATCCAGAAGCCTAGGAGATTTTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000381042.9
ENST00000444736.5
ENST00000537427.5
3UTR-3UTR CAA 90 bp TGGTGCACCAGCCCCGGAGAGCGCCTAGTGTGCACCAAGTATGTGTTTCATTACCCTTTCTTTTGTAAATaGCCCAGTCTTGGGTATGTC +
Preference number: 3 (lower is better)
Translates to: WCTSPGERLVCTKYVFHYPFFCK*PSLGYV
Trigger: GACATACCCAAGACTGGGCAATTTACAAAAGAAAGG...GTAATGAAACACATACTTGGTGCACACTAGGCGCTCTCCGGGGCTGGTGCACCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000381042.9
3UTR-3UTR CAA 90 bp GAGAGAGAGAGAGAGAGAGAGAGAATGAATGACAACCAGCTTGATAATCTCCTACACAATTGCCACACGTaGTGGGAGGGACCCAGTGGG +
Preference number: 3 (lower is better)
Translates to: ERERERERMNDNQLDNLLHNCHT*WEGPSG
Trigger: CCCACTGGGTCCCTCCCACAACGTGTGGCAATTGTG...TAGGAGATTATCAAGCTGGTTGTCATTCATTCTCTCTCTCTCTCTCTCTCTCTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000381042.9
ENST00000444736.5
ENST00000537427.5
3UTR GCA 72 bp CAAGTTTTCTTCTCTTGTCTGCTGCCATGTGAGACATaGCTTTCACCTTCCACCACAATTGTGAGGCCTCCT +
Preference number: 3 (lower is better)
Translates to: QVFFSCLLPCET*LSPSTTIVRPP
Trigger: AGGAGGCCTCACAATTGTGGTGGAAGGTGAAAGGCATGTCTCACATGGCAGCAGACAAGAGAAGAAAACTTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000381042.9
ENST00000444736.5
ENST00000537427.5
3UTR GCA 72 bp GGAGTTTCCCTGCACAAGTTTTCTTCTCTTGTCTGCTaGCATGTGAGACATGCCTTTCACCTTCCACCACAA +
Preference number: 3 (lower is better)
Translates to: GVSLHKFSSLVC*HVRHAFHLPPQ
Trigger: TTGTGGTGGAAGGTGAAAGGCATGTCTCACATGGCAGCAGACAAGAGAAGAAAACTTGTGCAGGGAAACTCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000381042.9
ENST00000444736.5
ENST00000537427.5
3UTR GCA 72 bp TTCTGGATATCTGCCCCTAACTGCACTGGGAGCAACTaGACACACCTGTGGAAAGCAAACTGTTATGGTTTG +
Preference number: 3 (lower is better)
Translates to: FWISAPNCTGSN*THLWKANCYGL
Trigger: CAAACCATAACAGTTTGCTTTCCACAGGTGTGTGCAGTTGCTCCCAGTGCAGTTAGGGGCAGATATCCAGAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000381042.9
ENST00000444736.5
ENST00000537427.5
3UTR GCA 72 bp TACCACAGGGACCATCATTACTCTAGAGTGGGTCTATaGATAACTCCTCAAAAAGAGGCCATCGTTGGTGTT +
Preference number: 3 (lower is better)
Translates to: YHRDHHYSRVGL*ITPQKEAIVGV
Trigger: AACACCAACGATGGCCTCTTTTTGAGGAGTTATGCATAGACCCACTCTAGAGTAATGATGGTCCCTGTGGTA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000381042.9
ENST00000444736.5
ENST00000537427.5
3UTR CCA 72 bp ACCTTCCACCACAATTGTGAGGCCTCCTCAGTCATGTaGAACTGTGAGCCCATTAAACCTTTCTTTTGTAAA +
Preference number: 3 (lower is better)
Translates to: TFHHNCEASSVM*NCEPIKPFFCK
Trigger: TTTACAAAAGAAAGGTTTAATGGGCTCACAGTTCCACATGACTGAGGAGGCCTCACAATTGTGGTGGAAGGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000381042.9
ENST00000444736.5
ENST00000537427.5
3UTR-3UTR CAA 90 bp GACCATCATTACTCTAGAGTGGGTCTATGCATAACTCCTCAAAAAGAGGCCATCGACAGTGTCAGTAAATaGGTACAAGCCCATACACAA +
Preference number: 3 (lower is better)
Translates to: DHHYSRVGLCITPQKEAIDSVSK*VQAHTQ
Trigger: TTGTGTATGGGCTTGTACCAATTTACTGACACTGTC...GATGGCCTCTTTTTGAGGAGTTATGCATAGACCCACTCTAGAGTAATGATGGTC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000381042.9
ENST00000444736.5
ENST00000537427.5
3UTR-3UTR CAA 90 bp GAAATTGCCCCCACAGGGAATTGGGAATTTATCAAGCTGCCAATCACAGTAATTCAATGCCTCAAAATTTaGATCCCACAAGTGAGGCAG +
Preference number: 3 (lower is better)
Translates to: EIAPTGNWEFIKLPITVIQCLKI*IPQVRQ
Trigger: CTGCCTCACTTGTGGGATCAAAATTTTGAGGCATTG...AATTACTGTGATTGGCAGCTTGATAAATTCCCAATTCCCTGTGGGGGCAATTTC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000381042.9
3UTR-3UTR CAA 90 bp GAGAGAGAGAGAGAGAGAGAGAGAATGAATGACAACCAGCTTGATAATCTCCTACCTTTCTTTTGTAAATaGCCCAGTCTTGGGTATGTC +
Preference number: 3 (lower is better)
Translates to: ERERERERMNDNQLDNLLPFFCK*PSLGYV
Trigger: GACATACCCAAGACTGGGCAATTTACAAAAGAAAGG...TAGGAGATTATCAAGCTGGTTGTCATTCATTCTCTCTCTCTCTCTCTCTCTCTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000381042.9
ENST00000444736.5
ENST00000537427.5
3UTR-3UTR CAA 90 bp ATGCATAACTCCTCAAAAAGAGGCCATCGTTGGTGTTTATGTGCTAAAAGTTGTGACAGTGTCAGTAAATaGGTACAAGCCCATACACAA +
Preference number: 3 (lower is better)
Translates to: MHNSSKRGHRWCLCAKSCDSVSK*VQAHTQ
Trigger: TTGTGTATGGGCTTGTACCAATTTACTGACACTGTC...ACAACTTTTAGCACATAAACACCAACGATGGCCTCTTTTTGAGGAGTTATGCAT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000381042.9
ENST00000444736.5
ENST00000537427.5
3UTR CCA 72 bp AAGAAATGCGTGACAATTGAAGACATGGAATTAAATTaGTTTGTCTCTAACTGCCTCTTAGTAATCAAGAGT +
Preference number: 3 (lower is better)
Translates to: KKCVTIEDMELN*FVSNCLLVIKS
Trigger: ACTCTTGATTACTAAGAGGCAGTTAGAGACAAACCAATTTAATTCCATGTCTTCAATTGTCACGCATTTCTT
35% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000381042.9
ENST00000444736.5
ENST00000537427.5
CDS-3UTR GCA 90 bp TGGTGCACCAGCCCCGGAGAGCGCCTAGTGTGCACCAAGTATGTGTTTCATTACCACAGGAGAATTTGGTaGACCAGCCCCGGAGAGCGC +
Preference number: 4 (lower is better)
Translates to: WCTSPGERLVCTKYVFHYHRRIW*TSPGER
Trigger: GCGCTCTCCGGGGCTGGTGCACCAAATTCTCCTGTG...GTAATGAAACACATACTTGGTGCACACTAGGCGCTCTCCGGGGCTGGTGCACCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000381042.9
3UTR CAA 72 bp AGCAGAGCATGCTTGGTAGCATGCTCACAGGAGAATTaGGTGCACCAGCCCCGGAGAGCGCCTAGTGTGCAC +
Preference number: 4 (lower is better)
Translates to: SRACLVACSQEN*VHQPRRAPSVH
Trigger: GTGCACACTAGGCGCTCTCCGGGGCTGGTGCACCAAATTCTCCTGTGAGCATGCTACCAAGCATGCTCTGCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000381042.9
CDS-3UTR GCA 90 bp GCTTCTGGATATCTGCCCCTAACTGCACTGGGAGCAACTGCACACACCTGTGGAAGCTGCCCTTTGTCCTaGGGGGAGATGTCCAGTCGT +
Preference number: 4 (lower is better)
Translates to: ASGYLPLTALGATAHTCGSCPLS*GEMSSR
Trigger: ACGACTGGACATCTCCCCGCAGGACAAAGGGCAGCT...TCCACAGGTGTGTGCAGTTGCTCCCAGTGCAGTTAGGGGCAGATATCCAGAAGC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000381042.9
ENST00000444736.5
ENST00000537427.5
CDS-3UTR TCA 90 bp GCTTCTGGATATCTGCCCCTAACTGCACTGGGAGCAACTGCACACACCTGTGGATGTCCAGTCGTCCACTaGAGGGGGAGATGGTTACTG +
Preference number: 4 (lower is better)
Translates to: ASGYLPLTALGATAHTCGCPVVH*RGRWLL
Trigger: CAGTAACCATCTCCCCCTTCAGTGGACGACTGGACA...TCCACAGGTGTGTGCAGTTGCTCCCAGTGCAGTTAGGGGCAGATATCCAGAAGC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000381042.9
ENST00000444736.5
ENST00000537427.5
CDS-3UTR GCA 90 bp GCTTCTGGATATCTGCCCCTAACTGCACTGGGAGCAACTGCACACACCTGTGGAATAACCGGGCGTTACTaGCCCGAAAGACTGCCTTCT +
Preference number: 4 (lower is better)
Translates to: ASGYLPLTALGATAHTCGITGRY*PERLPS
Trigger: AGAAGGCAGTCTTTCGGGGCAGTAACGCCCGGTTAT...TCCACAGGTGTGTGCAGTTGCTCCCAGTGCAGTTAGGGGCAGATATCCAGAAGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000381042.9
ENST00000444736.5
ENST00000537427.5
CDS-3UTR TCA 90 bp AATACTCAGAGAGGTATGGCGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATTCTGGGCCAGCTCGTaGGCGCTGGGAGGAAGAATC +
Preference number: 4 (lower is better)
Translates to: NTQRGMARERERERERERFWASS*ALGGRI
Trigger: GATTCTTCCTCCCAGCGCTCACGAGCTGGCCCAGAA...TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCGCCATACCTCTCTGAGTATT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000381042.9
ENST00000444736.5
ENST00000537427.5
CDS-3UTR GCA 90 bp GCTTCTGGATATCTGCCCCTAACTGCACTGGGAGCAACTGCACACACCTGTGGAATATCTGCCCCTAACTaGACTGGGAGCAACTGCACA +
Preference number: 4 (lower is better)
Translates to: ASGYLPLTALGATAHTCGISAPN*TGSNCT
Trigger: TGTGCAGTTGCTCCCAGTGCAGTTAGGGGCAGATAT...TCCACAGGTGTGTGCAGTTGCTCCCAGTGCAGTTAGGGGCAGATATCCAGAAGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000381042.9
ENST00000444736.5
ENST00000537427.5
CDS-3UTR CCA 90 bp GCTTCTGGATATCTGCCCCTAACTGCACTGGGAGCAACTGCACACACCTGTGGAGCCCCCACAGGGAATTaGGAATTTATCAAGCTGCCA +
Preference number: 4 (lower is better)
Translates to: ASGYLPLTALGATAHTCGAPTGN*EFIKLP
Trigger: TGGCAGCTTGATAAATTCCCAATTCCCTGTGGGGGC...TCCACAGGTGTGTGCAGTTGCTCCCAGTGCAGTTAGGGGCAGATATCCAGAAGC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000381042.9
CDS-3UTR TCA 90 bp CTATTTCTCAAATCCTTCCTCTCCTACCTAGTTCCTTCAGTTCCAGAGCTACAGTGGGAAGAGCGTTGGTaGGGCCTCCGTCCACCCACT +
Preference number: 4 (lower is better)
Translates to: LFLKSFLSYLVPSVPELQWEERW*GLRPPT
Trigger: AGTGGGTGGACGGAGGCCTCACCAACGCTCTTCCCA...CTGTAGCTCTGGAACTGAAGGAACTAGGTAGGAGAGGAAGGATTTGAGAAATAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000381042.9
ENST00000444736.5
ENST00000537427.5
CDS-3UTR TCA 90 bp TACTCTAGAGTGGGTCTATGCATAACTCCTCAAAAAGAGGCCATCGTTGGTGTTTGGGAAGAGCGTTGGTaGGGCCTCCGTCCACCCACT +
Preference number: 4 (lower is better)
Translates to: YSRVGLCITPQKEAIVGVWEERW*GLRPPT
Trigger: AGTGGGTGGACGGAGGCCTCACCAACGCTCTTCCCA...AACACCAACGATGGCCTCTTTTTGAGGAGTTATGCATAGACCCACTCTAGAGTA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000381042.9
ENST00000444736.5
ENST00000537427.5
CDS-3UTR GCA 90 bp TGGTGCACCAGCCCCGGAGAGCGCCTAGTGTGCACCAAGTATGTGTTTCATTACTCTGCAAAGTGCAGATaGTGCCCCCAAGTGGTAAAT +
Preference number: 4 (lower is better)
Translates to: WCTSPGERLVCTKYVFHYSAKCR*CPQVVN
Trigger: ATTTACCACTTGGGGGCAGCATCTGCACTTTGCAGA...GTAATGAAACACATACTTGGTGCACACTAGGCGCTCTCCGGGGCTGGTGCACCA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000381042.9
CDS-3UTR GCA 90 bp AATACTCAGAGAGGTATGGCGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATCTGTGCCCCGGAAGTaGCTTACCCTCTTCGCGTCT +
Preference number: 4 (lower is better)
Translates to: NTQRGMARERERERERERSVPRK*LTLFAS
Trigger: AGACGCGAAGAGGGTAAGGCACTTCCGGGGCACAGA...TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCGCCATACCTCTCTGAGTATT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000444736.5
ENST00000537427.5
CDS-3UTR CCA 90 bp GCTTCTGGATATCTGCCCCTAACTGCACTGGGAGCAACTGCACACACCTGTGGAGCCTCCTCAGTCATGTaGAACTGTGAGCCCATTAAA +
Preference number: 4 (lower is better)
Translates to: ASGYLPLTALGATAHTCGASSVM*NCEPIK
Trigger: TTTAATGGGCTCACAGTTCCACATGACTGAGGAGGC...TCCACAGGTGTGTGCAGTTGCTCCCAGTGCAGTTAGGGGCAGATATCCAGAAGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000381042.9
ENST00000444736.5
ENST00000537427.5
CDS-3UTR CCA 90 bp TGGTGCACCAGCCCCGGAGAGCGCCTAGTGTGCACCAAGTATGTGTTTCATTACATACTCAGAGAGGTATaGCGAGAGAGAGAGAGAGAG +
Preference number: 4 (lower is better)
Translates to: WCTSPGERLVCTKYVFHYILREV*RERERE
Trigger: CTCTCTCTCTCTCTCTCGCCATACCTCTCTGAGTAT...GTAATGAAACACATACTTGGTGCACACTAGGCGCTCTCCGGGGCTGGTGCACCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000381042.9
CDS-3UTR CCA 90 bp GCTTCTGGATATCTGCCCCTAACTGCACTGGGAGCAACTGCACACACCTGTGGAATACTCAGAGAGGTATaGCGAGAGAGAGAGAGAGAG +
Preference number: 4 (lower is better)
Translates to: ASGYLPLTALGATAHTCGILREV*RERERE
Trigger: CTCTCTCTCTCTCTCTCGCCATACCTCTCTGAGTAT...TCCACAGGTGTGTGCAGTTGCTCCCAGTGCAGTTAGGGGCAGATATCCAGAAGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000381042.9
ENST00000444736.5
ENST00000537427.5
CDS-3UTR TCA 90 bp GCTTCTGGATATCTGCCCCTAACTGCACTGGGAGCAACTGCACACACCTGTGGAGAGAGAGAGAGAGAATaGATGACAACCAGCTTGATA +
Preference number: 4 (lower is better)
Translates to: ASGYLPLTALGATAHTCGERERE*MTTSLI
Trigger: TATCAAGCTGGTTGTCATTCATTCTCTCTCTCTCTC...TCCACAGGTGTGTGCAGTTGCTCCCAGTGCAGTTAGGGGCAGATATCCAGAAGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000381042.9
ENST00000444736.5
ENST00000537427.5
CDS-3UTR GCA 90 bp GACCATCATTACTCTAGAGTGGGTCTATGCATAACTCCTCAAAAAGAGGCCATCCTAGCTGTAGCACAATaGAGCCCCGGGACACTTCCG +
Preference number: 4 (lower is better)
Translates to: DHHYSRVGLCITPQKEAILAVAQ*SPGTLP
Trigger: CGGAAGTGTCCCGGGGCTGCATTGTGCTACAGCTAG...GATGGCCTCTTTTTGAGGAGTTATGCATAGACCCACTCTAGAGTAATGATGGTC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000381042.9
CDS-3UTR GCA 90 bp AATACTCAGAGAGGTATGGCGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATGTAGCTCCCACAATTaGCACACGTTGTGGGAGGGA +
Preference number: 4 (lower is better)
Translates to: NTQRGMARERERERERERCSSHN*HTLWEG
Trigger: TCCCTCCCACAACGTGTGGCAATTGTGGGAGCTACA...TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCGCCATACCTCTCTGAGTATT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000381042.9
ENST00000444736.5
ENST00000537427.5
CDS-3UTR GCA 90 bp TACTCTAGAGTGGGTCTATGCATAACTCCTCAAAAAGAGGCCATCGTTGGTGTTTCTGTGCCCCGGAAGTaGCTTACCCTCTTCGCGTCT +
Preference number: 4 (lower is better)
Translates to: YSRVGLCITPQKEAIVGVSVPRK*LTLFAS
Trigger: AGACGCGAAGAGGGTAAGGCACTTCCGGGGCACAGA...AACACCAACGATGGCCTCTTTTTGAGGAGTTATGCATAGACCCACTCTAGAGTA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000444736.5
ENST00000537427.5
CDS-3UTR CCA 90 bp GACCATCATTACTCTAGAGTGGGTCTATGCATAACTCCTCAAAAAGAGGCCATCCCAGCTCGTGAGCGCTaGGAGGAAGAATCGACTCCA +
Preference number: 4 (lower is better)
Translates to: DHHYSRVGLCITPQKEAIPARER*EEESTP
Trigger: TGGAGTCGATTCTTCCTCCCAGCGCTCACGAGCTGG...GATGGCCTCTTTTTGAGGAGTTATGCATAGACCCACTCTAGAGTAATGATGGTC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000381042.9
ENST00000444736.5
ENST00000537427.5
CDS-3UTR TCA 90 bp TACTCTAGAGTGGGTCTATGCATAACTCCTCAAAAAGAGGCCATCGTTGGTGTTTGTCCAGTCGTCCACTaGAGGGGGAGATGGTTACTG +
Preference number: 4 (lower is better)
Translates to: YSRVGLCITPQKEAIVGVCPVVH*RGRWLL
Trigger: CAGTAACCATCTCCCCCTTCAGTGGACGACTGGACA...AACACCAACGATGGCCTCTTTTTGAGGAGTTATGCATAGACCCACTCTAGAGTA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENST00000381042.9
ENST00000444736.5
ENST00000537427.5
CDS-3UTR TCA 90 bp GACCATCATTACTCTAGAGTGGGTCTATGCATAACTCCTCAAAAAGAGGCCATCTGTCCAGTCGTCCACTaGAGGGGGAGATGGTTACTG +
Preference number: 4 (lower is better)
Translates to: DHHYSRVGLCITPQKEAICPVVH*RGRWLL
Trigger: CAGTAACCATCTCCCCCTTCAGTGGACGACTGGACA...GATGGCCTCTTTTTGAGGAGTTATGCATAGACCCACTCTAGAGTAATGATGGTC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENST00000381042.9
ENST00000444736.5
ENST00000537427.5
CDS-3UTR GCA 90 bp AATACTCAGAGAGGTATGGCGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACTGCCATGTGAGACATaGCTTTCACCTTCCACCACA +
Preference number: 4 (lower is better)
Translates to: NTQRGMARERERERERERLPCET*LSPSTT
Trigger: TGTGGTGGAAGGTGAAAGGCATGTCTCACATGGCAG...TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCGCCATACCTCTCTGAGTATT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000381042.9
ENST00000444736.5
ENST00000537427.5
CDS-3UTR CCA 90 bp ATTTATCAAGCTGCCAATCACAGTAATTACCCTGCAAACATATCAGTATCTGGGGTCCCTTTAACCAGATaGCGGGGCCGGGCCGTCACT +
Preference number: 4 (lower is better)
Translates to: IYQAANHSNYPANISVSGVPLTR*RGRAVT
Trigger: AGTGACGGCCCGGCCCCGCCATCTGGTTAAAGGGAC...CCCAGATACTGATATGTTTGCAGGGTAATTACTGTGATTGGCAGCTTGATAAAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000381042.9
CDS-3UTR CCA 90 bp GAGAGAGAGAGAGAGAGAGAGAGAATGAATGACAACCAGCTTGATAATCTCCTACCAGCTCGTGAGCGCTaGGAGGAAGAATCGACTCCA +
Preference number: 4 (lower is better)
Translates to: ERERERERMNDNQLDNLLPARER*EEESTP
Trigger: TGGAGTCGATTCTTCCTCCCAGCGCTCACGAGCTGG...TAGGAGATTATCAAGCTGGTTGTCATTCATTCTCTCTCTCTCTCTCTCTCTCTC
49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000381042.9
ENST00000444736.5
ENST00000537427.5
CDS-3UTR TCA 90 bp ATGCATAACTCCTCAAAAAGAGGCCATCGTTGGTGTTTATGTGCTAAAAGTTGTTTCTGGGCCAGCTCGTaGGCGCTGGGAGGAAGAATC +
Preference number: 4 (lower is better)
Translates to: MHNSSKRGHRWCLCAKSCFWASS*ALGGRI
Trigger: GATTCTTCCTCCCAGCGCTCACGAGCTGGCCCAGAA...ACAACTTTTAGCACATAAACACCAACGATGGCCTCTTTTTGAGGAGTTATGCAT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000381042.9
ENST00000444736.5
ENST00000537427.5
CDS-3UTR TCA 90 bp TACTCTAGAGTGGGTCTATGCATAACTCCTCAAAAAGAGGCCATCGTTGGTGTTTGGTTTTGGCGTTGGTaGTGGATACGTGCAGTCGGT +
Preference number: 4 (lower is better)
Translates to: YSRVGLCITPQKEAIVGVWFWRW*WIRAVG
Trigger: ACCGACTGCACGTATCCATCACCAACGCCAAAACCA...AACACCAACGATGGCCTCTTTTTGAGGAGTTATGCATAGACCCACTCTAGAGTA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000381042.9
ENST00000444736.5
ENST00000537427.5
CDS-3UTR TCA 90 bp GCTTCTGGATATCTGCCCCTAACTGCACTGGGAGCAACTGCACACACCTGTGGAAGTGGACATAACAATTaGGAATCTATCCACTTCATG +
Preference number: 4 (lower is better)
Translates to: ASGYLPLTALGATAHTCGSGHNN*ESIHFM
Trigger: CATGAAGTGGATAGATTCTCAATTGTTATGTCCACT...TCCACAGGTGTGTGCAGTTGCTCCCAGTGCAGTTAGGGGCAGATATCCAGAAGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000381042.9
ENST00000444736.5
ENST00000537427.5
CDS-3UTR GCA 90 bp GACCATCATTACTCTAGAGTGGGTCTATGCATAACTCCTCAAAAAGAGGCCATCCCCCCAAGTGGTAAATaGCCAGAAATCCACACGCTG +
Preference number: 4 (lower is better)
Translates to: DHHYSRVGLCITPQKEAIPPSGK*PEIHTL
Trigger: CAGCGTGTGGATTTCTGGGCATTTACCACTTGGGGG...GATGGCCTCTTTTTGAGGAGTTATGCATAGACCCACTCTAGAGTAATGATGGTC
48% GC, longest homopolymer 6 nt, total homopolymer stretches 11 nt.
Matches the following 2 transcripts:
ENST00000381042.9
ENST00000444736.5
CDS-3UTR GCA 90 bp GCCAGTTCTACAATGCCTCAAAATTTTGATCCCACAAGTGAGGCAGATCCTGTTGCAAAGTGCAGATGCTaGCCCCAAGTGGTAAATGCC +
Preference number: 4 (lower is better)
Translates to: ASSTMPQNFDPTSEADPVAKCRC*PQVVNA
Trigger: GGCATTTACCACTTGGGGGCAGCATCTGCACTTTGC...AACAGGATCTGCCTCACTTGTGGGATCAAAATTTTGAGGCATTGTAGAACTGGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000381042.9
CDS-3UTR GCA 90 bp GACCATCATTACTCTAGAGTGGGTCTATGCATAACTCCTCAAAAAGAGGCCATCATAACCGGGCGTTACTaGCCCGAAAGACTGCCTTCT +
Preference number: 4 (lower is better)
Translates to: DHHYSRVGLCITPQKEAIITGRY*PERLPS
Trigger: AGAAGGCAGTCTTTCGGGGCAGTAACGCCCGGTTAT...GATGGCCTCTTTTTGAGGAGTTATGCATAGACCCACTCTAGAGTAATGATGGTC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000381042.9
ENST00000444736.5
ENST00000537427.5
CDS-3UTR GCA 90 bp TACTCTAGAGTGGGTCTATGCATAACTCCTCAAAAAGAGGCCATCGTTGGTGTTCCGTCCACCCACTTCTaGCCTTTGTATTCCACTAGC +
Preference number: 4 (lower is better)
Translates to: YSRVGLCITPQKEAIVGVPSTHF*PLYSTS
Trigger: GCTAGTGGAATACAAAGGGCAGAAGTGGGTGGACGG...AACACCAACGATGGCCTCTTTTTGAGGAGTTATGCATAGACCCACTCTAGAGTA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000381042.9
ENST00000444736.5
ENST00000537427.5
CDS-3UTR GCA 90 bp GACCATCATTACTCTAGAGTGGGTCTATGCATAACTCCTCAAAAAGAGGCCATCACATACAGATCTAGCTaGCCTTTGTCCTGCGGGGAG +
Preference number: 4 (lower is better)
Translates to: DHHYSRVGLCITPQKEAITYRSS*PLSCGE
Trigger: CTCCCCGCAGGACAAAGGGCAGCTAGATCTGTATGT...GATGGCCTCTTTTTGAGGAGTTATGCATAGACCCACTCTAGAGTAATGATGGTC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000381042.9
ENST00000444736.5
ENST00000537427.5
CDS-3UTR GCA 90 bp GACCATCATTACTCTAGAGTGGGTCTATGCATAACTCCTCAAAAAGAGGCCATCTGTAGCTCCCACAATTaGCACACGTTGTGGGAGGGA +
Preference number: 4 (lower is better)
Translates to: DHHYSRVGLCITPQKEAICSSHN*HTLWEG
Trigger: TCCCTCCCACAACGTGTGGCAATTGTGGGAGCTACA...GATGGCCTCTTTTTGAGGAGTTATGCATAGACCCACTCTAGAGTAATGATGGTC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000381042.9
ENST00000444736.5
ENST00000537427.5
CDS-3UTR GCA 90 bp GCCAGTTCTACAATGCCTCAAAATTTTGATCCCACAAGTGAGGCAGATCCTGTTTGCACTGGGAGCAACTaGACACACCTGTGGAAAGCA +
Preference number: 4 (lower is better)
Translates to: ASSTMPQNFDPTSEADPVCTGSN*THLWKA
Trigger: TGCTTTCCACAGGTGTGTGCAGTTGCTCCCAGTGCA...AACAGGATCTGCCTCACTTGTGGGATCAAAATTTTGAGGCATTGTAGAACTGGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000381042.9
CDS-3UTR GCA 90 bp CTATTTCTCAAATCCTTCCTCTCCTACCTAGTTCCTTCAGTTCCAGAGCTACAGTGCACTGGGAGCAACTaGACACACCTGTGGAAAGCA +
Preference number: 4 (lower is better)
Translates to: LFLKSFLSYLVPSVPELQCTGSN*THLWKA
Trigger: TGCTTTCCACAGGTGTGTGCAGTTGCTCCCAGTGCA...CTGTAGCTCTGGAACTGAAGGAACTAGGTAGGAGAGGAAGGATTTGAGAAATAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000381042.9
ENST00000444736.5
ENST00000537427.5
CDS-3UTR CCA 90 bp AGCAAAGGTAAGCAGAGCATGCTTGGTAGCATGCTCACAGGAGAATTTGGTGCAAATCTCCTAGGCTTCTaGATATCTGCCCCTAACTGC +
Preference number: 4 (lower is better)
Translates to: SKGKQSMLGSMLTGEFGANLLGF*ISAPNC
Trigger: GCAGTTAGGGGCAGATATCCAGAAGCCTAGGAGATT...TGCACCAAATTCTCCTGTGAGCATGCTACCAAGCATGCTCTGCTTACCTTTGCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000381042.9
CDS-3UTR CCA 90 bp GCTTCTGGATATCTGCCCCTAACTGCACTGGGAGCAACTGCACACACCTGTGGAAAAAGAGGCCATCGTTaGTGTTTATGTGCTAAAAGT +
Preference number: 4 (lower is better)
Translates to: ASGYLPLTALGATAHTCGKRGHR*CLCAKS
Trigger: ACTTTTAGCACATAAACACCAACGATGGCCTCTTTT...TCCACAGGTGTGTGCAGTTGCTCCCAGTGCAGTTAGGGGCAGATATCCAGAAGC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENST00000381042.9
ENST00000444736.5
ENST00000537427.5
CDS-3UTR TCA 90 bp AATACTCAGAGAGGTATGGCGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACGAAAGACTGCCTTCTaGTTTCTTCGGCAAACTTGT +
Preference number: 4 (lower is better)
Translates to: NTQRGMARERERERERERRKTAF*FLRQTC
Trigger: ACAAGTTTGCCGAAGAAATCAGAAGGCAGTCTTTCG...TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCGCCATACCTCTCTGAGTATT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000381042.9
ENST00000444736.5
ENST00000537427.5
CDS-3UTR TCA 90 bp GAAATTGCCCCCACAGGGAATTGGGAATTTATCAAGCTGCCAATCACAGTAATTTGGTTTTGGCGTTGGTaGTGGATACGTGCAGTCGGT +
Preference number: 4 (lower is better)
Translates to: EIAPTGNWEFIKLPITVIWFWRW*WIRAVG
Trigger: ACCGACTGCACGTATCCATCACCAACGCCAAAACCA...AATTACTGTGATTGGCAGCTTGATAAATTCCCAATTCCCTGTGGGGGCAATTTC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000381042.9
CDS-3UTR TCA 90 bp AAGAAATGCGTGACAATTGAAGACATGGAATTAAATTGGTTTGTCTCTAACTGCTGGGAAGAGCGTTGGTaGGGCCTCCGTCCACCCACT +
Preference number: 4 (lower is better)
Translates to: KKCVTIEDMELNWFVSNCWEERW*GLRPPT
Trigger: AGTGGGTGGACGGAGGCCTCACCAACGCTCTTCCCA...GCAGTTAGAGACAAACCAATTTAATTCCATGTCTTCAATTGTCACGCATTTCTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000381042.9
ENST00000444736.5
ENST00000537427.5
CDS-3UTR TCA 90 bp TACTCTAGAGTGGGTCTATGCATAACTCCTCAAAAAGAGGCCATCGTTGGTGTTTTTAGGGGAGGAAGATaGGAGGGGATAAGCCTCTTC +
Preference number: 4 (lower is better)
Translates to: YSRVGLCITPQKEAIVGVFRGGR*EGISLF
Trigger: GAAGAGGCTTATCCCCTCTCATCTTCCTCCCCTAAA...AACACCAACGATGGCCTCTTTTTGAGGAGTTATGCATAGACCCACTCTAGAGTA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 3 transcripts:
ENST00000381042.9
ENST00000444736.5
ENST00000537427.5
CDS-3UTR GCA 90 bp GAGAGAGAGAGAGAGAGAGAGAGAATGAATGACAACCAGCTTGATAATCTCCTACCCCCAAGTGGTAAATaGCCAGAAATCCACACGCTG +
Preference number: 4 (lower is better)
Translates to: ERERERERMNDNQLDNLLPPSGK*PEIHTL
Trigger: CAGCGTGTGGATTTCTGGGCATTTACCACTTGGGGG...TAGGAGATTATCAAGCTGGTTGTCATTCATTCTCTCTCTCTCTCTCTCTCTCTC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000381042.9
ENST00000444736.5
CDS-3UTR GCA 90 bp GAAATTGCCCCCACAGGGAATTGGGAATTTATCAAGCTGCCAATCACAGTAATTATAACCGGGCGTTACTaGCCCGAAAGACTGCCTTCT +
Preference number: 4 (lower is better)
Translates to: EIAPTGNWEFIKLPITVIITGRY*PERLPS
Trigger: AGAAGGCAGTCTTTCGGGGCAGTAACGCCCGGTTAT...AATTACTGTGATTGGCAGCTTGATAAATTCCCAATTCCCTGTGGGGGCAATTTC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000381042.9
CDS-3UTR GCA 90 bp GAGAGAGAGAGAGAGAGAGAGAGAATGAATGACAACCAGCTTGATAATCTCCTACCGTCCACCCACTTCTaGCCTTTGTATTCCACTAGC +
Preference number: 4 (lower is better)
Translates to: ERERERERMNDNQLDNLLPSTHF*PLYSTS
Trigger: GCTAGTGGAATACAAAGGGCAGAAGTGGGTGGACGG...TAGGAGATTATCAAGCTGGTTGTCATTCATTCTCTCTCTCTCTCTCTCTCTCTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000381042.9
ENST00000444736.5
ENST00000537427.5
CDS-3UTR GCA 90 bp ATGCATAACTCCTCAAAAAGAGGCCATCGTTGGTGTTTATGTGCTAAAAGTTGTAGCTGCCCTTTGTCCTaGGGGGAGATGTCCAGTCGT +
Preference number: 4 (lower is better)
Translates to: MHNSSKRGHRWCLCAKSCSCPLS*GEMSSR
Trigger: ACGACTGGACATCTCCCCGCAGGACAAAGGGCAGCT...ACAACTTTTAGCACATAAACACCAACGATGGCCTCTTTTTGAGGAGTTATGCAT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENST00000381042.9
ENST00000444736.5
ENST00000537427.5
CDS-3UTR GCA 90 bp TACTCTAGAGTGGGTCTATGCATAACTCCTCAAAAAGAGGCCATCGTTGGTGTTCTGCCATGTGAGACATaGCTTTCACCTTCCACCACA +
Preference number: 4 (lower is better)
Translates to: YSRVGLCITPQKEAIVGVLPCET*LSPSTT
Trigger: TGTGGTGGAAGGTGAAAGGCATGTCTCACATGGCAG...AACACCAACGATGGCCTCTTTTTGAGGAGTTATGCATAGACCCACTCTAGAGTA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000381042.9
ENST00000444736.5
ENST00000537427.5
CDS-3UTR GCA 90 bp GACCATCATTACTCTAGAGTGGGTCTATGCATAACTCCTCAAAAAGAGGCCATCCTGCCATGTGAGACATaGCTTTCACCTTCCACCACA +
Preference number: 4 (lower is better)
Translates to: DHHYSRVGLCITPQKEAILPCET*LSPSTT
Trigger: TGTGGTGGAAGGTGAAAGGCATGTCTCACATGGCAG...GATGGCCTCTTTTTGAGGAGTTATGCATAGACCCACTCTAGAGTAATGATGGTC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000381042.9
ENST00000444736.5
ENST00000537427.5
CDS-3UTR GCA 90 bp AGCAAAGGTAAGCAGAGCATGCTTGGTAGCATGCTCACAGGAGAATTTGGTGCATCTTCTCTTGTCTGCTaGCATGTGAGACATGCCTTT +
Preference number: 4 (lower is better)
Translates to: SKGKQSMLGSMLTGEFGASSLVC*HVRHAF
Trigger: AAAGGCATGTCTCACATGGCAGCAGACAAGAGAAGA...TGCACCAAATTCTCCTGTGAGCATGCTACCAAGCATGCTCTGCTTACCTTTGCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000381042.9
CDS-3UTR GCA 90 bp AATACTCAGAGAGGTATGGCGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATTTTCTTCTCTTGTCTaGTGCCATGTGAGACATGCC +
Preference number: 4 (lower is better)
Translates to: NTQRGMARERERERERERFSSLV*CHVRHA
Trigger: GGCATGTCTCACATGGCAGCAGACAAGAGAAGAAAA...TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCGCCATACCTCTCTGAGTATT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000381042.9
ENST00000444736.5
ENST00000537427.5
CDS-3UTR GCA 90 bp GAAATTGCCCCCACAGGGAATTGGGAATTTATCAAGCTGCCAATCACAGTAATTTGTAGCTCCCACAATTaGCACACGTTGTGGGAGGGA +
Preference number: 4 (lower is better)
Translates to: EIAPTGNWEFIKLPITVICSSHN*HTLWEG
Trigger: TCCCTCCCACAACGTGTGGCAATTGTGGGAGCTACA...AATTACTGTGATTGGCAGCTTGATAAATTCCCAATTCCCTGTGGGGGCAATTTC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000381042.9
CDS-3UTR GCA 90 bp CTATTTCTCAAATCCTTCCTCTCCTACCTAGTTCCTTCAGTTCCAGAGCTACAGATATCTGCCCCTAACTaGACTGGGAGCAACTGCACA +
Preference number: 4 (lower is better)
Translates to: LFLKSFLSYLVPSVPELQISAPN*TGSNCT
Trigger: TGTGCAGTTGCTCCCAGTGCAGTTAGGGGCAGATAT...CTGTAGCTCTGGAACTGAAGGAACTAGGTAGGAGAGGAAGGATTTGAGAAATAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000381042.9
ENST00000444736.5
ENST00000537427.5
CDS-3UTR GCA 90 bp TGGTGCACCAGCCCCGGAGAGCGCCTAGTGTGCACCAAGTATGTGTTTCATTACAGATCCTGTTGTGAATaGCTGTTTTCAATTAGTATG +
Preference number: 4 (lower is better)
Translates to: WCTSPGERLVCTKYVFHYRSCCE*LFSISM
Trigger: CATACTAATTGAAAACAGGCATTCACAACAGGATCT...GTAATGAAACACATACTTGGTGCACACTAGGCGCTCTCCGGGGCTGGTGCACCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000381042.9
CDS-3UTR GCA 90 bp TGGTGCACCAGCCCCGGAGAGCGCCTAGTGTGCACCAAGTATGTGTTTCATTACTTCAGATTTTCTATATaGCAGTTCTACAATGCCTCA +
Preference number: 4 (lower is better)
Translates to: WCTSPGERLVCTKYVFHYFRFSI*QFYNAS
Trigger: TGAGGCATTGTAGAACTGGCATATAGAAAATCTGAA...GTAATGAAACACATACTTGGTGCACACTAGGCGCTCTCCGGGGCTGGTGCACCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000381042.9
CDS-3UTR CCA 90 bp GCCAGTTCTACAATGCCTCAAAATTTTGATCCCACAAGTGAGGCAGATCCTGTTGGGGGAAAAAGGGCTTaGTTGAGTCTCACCAGGTTT +
Preference number: 4 (lower is better)
Translates to: ASSTMPQNFDPTSEADPVGGKRA*LSLTRF
Trigger: AAACCTGGTGAGACTCAACCAAGCCCTTTTTCCCCC...AACAGGATCTGCCTCACTTGTGGGATCAAAATTTTGAGGCATTGTAGAACTGGC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 1 transcripts:
ENST00000381042.9
CDS-3UTR CCA 90 bp TACTCTAGAGTGGGTCTATGCATAACTCCTCAAAAAGAGGCCATCGTTGGTGTTTCTCCTAAACTGGGGTaGGGTTTAGGGGAGGAAGAT +
Preference number: 4 (lower is better)
Translates to: YSRVGLCITPQKEAIVGVSPKLG*GLGEED
Trigger: ATCTTCCTCCCCTAAACCCCACCCCAGTTTAGGAGA...AACACCAACGATGGCCTCTTTTTGAGGAGTTATGCATAGACCCACTCTAGAGTA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENST00000381042.9
ENST00000444736.5
ENST00000537427.5
CDS-3UTR CCA 90 bp GACCATCATTACTCTAGAGTGGGTCTATGCATAACTCCTCAAAAAGAGGCCATCTCTCCTAAACTGGGGTaGGGTTTAGGGGAGGAAGAT +
Preference number: 4 (lower is better)
Translates to: DHHYSRVGLCITPQKEAISPKLG*GLGEED
Trigger: ATCTTCCTCCCCTAAACCCCACCCCAGTTTAGGAGA...GATGGCCTCTTTTTGAGGAGTTATGCATAGACCCACTCTAGAGTAATGATGGTC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENST00000381042.9
ENST00000444736.5
ENST00000537427.5
CDS-3UTR TCA 90 bp GACCATCATTACTCTAGAGTGGGTCTATGCATAACTCCTCAAAAAGAGGCCATCCCCCAGCGAAGGCTTTaGCATCCTTCACAAGTTTTT +
Preference number: 4 (lower is better)
Translates to: DHHYSRVGLCITPQKEAIPQRRL*HPSQVF
Trigger: AAAAACTTGTGAAGGATGTCAAAGCCTTCGCTGGGG...GATGGCCTCTTTTTGAGGAGTTATGCATAGACCCACTCTAGAGTAATGATGGTC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000381042.9
ENST00000444736.5
CDS-3UTR TCA 90 bp AAGAAATGCGTGACAATTGAAGACATGGAATTAAATTGGTTTGTCTCTAACTGCTTCTGGGCCAGCTCGTaGGCGCTGGGAGGAAGAATC +
Preference number: 4 (lower is better)
Translates to: KKCVTIEDMELNWFVSNCFWASS*ALGGRI
Trigger: GATTCTTCCTCCCAGCGCTCACGAGCTGGCCCAGAA...GCAGTTAGAGACAAACCAATTTAATTCCATGTCTTCAATTGTCACGCATTTCTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000381042.9
ENST00000444736.5
ENST00000537427.5
CDS-3UTR TCA 90 bp GAGAGAGAGAGAGAGAGAGAGAGAATGAATGACAACCAGCTTGATAATCTCCTATTTAGGGGAGGAAGATaGGAGGGGATAAGCCTCTTC +
Preference number: 4 (lower is better)
Translates to: ERERERERMNDNQLDNLLFRGGR*EGISLF
Trigger: GAAGAGGCTTATCCCCTCTCATCTTCCTCCCCTAAA...TAGGAGATTATCAAGCTGGTTGTCATTCATTCTCTCTCTCTCTCTCTCTCTCTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000381042.9
ENST00000444736.5
ENST00000537427.5
CDS-3UTR TCA 90 bp AATACTCAGAGAGGTATGGCGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAATaGATGACAACCAGCTTGATA +
Preference number: 4 (lower is better)
Translates to: NTQRGMARERERERERERERERE*MTTSLI
Trigger: TATCAAGCTGGTTGTCATTCATTCTCTCTCTCTCTC...TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCGCCATACCTCTCTGAGTATT
46% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000381042.9
ENST00000444736.5
ENST00000537427.5
CDS-3UTR GCA 90 bp TGCGTGACAATTGAAGACATGGAATTAAATTGGTTTGTCTCTAACTGCCTCTTAAGCTGCCCTTTGTCCTaGGGGGAGATGTCCAGTCGT +
Preference number: 4 (lower is better)
Translates to: CVTIEDMELNWFVSNCLLSCPLS*GEMSSR
Trigger: ACGACTGGACATCTCCCCGCAGGACAAAGGGCAGCT...TAAGAGGCAGTTAGAGACAAACCAATTTAATTCCATGTCTTCAATTGTCACGCA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000381042.9
ENST00000444736.5
ENST00000537427.5
CDS-3UTR GCA 90 bp TACTCTAGAGTGGGTCTATGCATAACTCCTCAAAAAGAGGCCATCGTTGGTGTTGGAGAGCGCCTAGTGTaGACCAAGTATGTGTTTCAT +
Preference number: 4 (lower is better)
Translates to: YSRVGLCITPQKEAIVGVGERLV*TKYVFH
Trigger: ATGAAACACATACTTGGTGCACACTAGGCGCTCTCC...AACACCAACGATGGCCTCTTTTTGAGGAGTTATGCATAGACCCACTCTAGAGTA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000381042.9
CDS-3UTR GCA 90 bp GACCATCATTACTCTAGAGTGGGTCTATGCATAACTCCTCAAAAAGAGGCCATCGCATGCTTGGTAGCATaGTCACAGGAGAATTTGGTG +
Preference number: 4 (lower is better)
Translates to: DHHYSRVGLCITPQKEAIACLVA*SQENLV
Trigger: CACCAAATTCTCCTGTGAGCATGCTACCAAGCATGC...GATGGCCTCTTTTTGAGGAGTTATGCATAGACCCACTCTAGAGTAATGATGGTC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000381042.9
CDS-3UTR GCA 90 bp GCCAGTTCTACAATGCCTCAAAATTTTGATCCCACAAGTGAGGCAGATCCTGTTAAGGTAAGCAGAGCATaGTTGGTAGCATGCTCACAG +
Preference number: 4 (lower is better)
Translates to: ASSTMPQNFDPTSEADPVKVSRA*LVACSQ
Trigger: CTGTGAGCATGCTACCAAGCATGCTCTGCTTACCTT...AACAGGATCTGCCTCACTTGTGGGATCAAAATTTTGAGGCATTGTAGAACTGGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000381042.9
CDS-3UTR CCA 90 bp TGCGTGACAATTGAAGACATGGAATTAAATTGGTTTGTCTCTAACTGCCTCTTACCAGCTCGTGAGCGCTaGGAGGAAGAATCGACTCCA +
Preference number: 4 (lower is better)
Translates to: CVTIEDMELNWFVSNCLLPARER*EEESTP
Trigger: TGGAGTCGATTCTTCCTCCCAGCGCTCACGAGCTGG...TAAGAGGCAGTTAGAGACAAACCAATTTAATTCCATGTCTTCAATTGTCACGCA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000381042.9
ENST00000444736.5
ENST00000537427.5
CDS-3UTR CCA 90 bp TACTCTAGAGTGGGTCTATGCATAACTCCTCAAAAAGAGGCCATCGTTGGTGTTGAGGTAACTGAATCATaGAGGCAGGTCTTTCCCATG +
Preference number: 4 (lower is better)
Translates to: YSRVGLCITPQKEAIVGVEVTES*RQVFPM
Trigger: CATGGGAAAGACCTGCCTCCATGATTCAGTTACCTC...AACACCAACGATGGCCTCTTTTTGAGGAGTTATGCATAGACCCACTCTAGAGTA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000381042.9
ENST00000444736.5
ENST00000537427.5
CDS-3UTR CCA 90 bp TGCGTGACAATTGAAGACATGGAATTAAATTGGTTTGTCTCTAACTGCCTCTTAGCTCACAGGAGAATTTaGTGCACCAGCCCCGGAGAG +
Preference number: 4 (lower is better)
Translates to: CVTIEDMELNWFVSNCLLAHRRI*CTSPGE
Trigger: CTCTCCGGGGCTGGTGCACCAAATTCTCCTGTGAGC...TAAGAGGCAGTTAGAGACAAACCAATTTAATTCCATGTCTTCAATTGTCACGCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000381042.9
CDS-3UTR TCA 90 bp ATGCATAACTCCTCAAAAAGAGGCCATCGTTGGTGTTTATGTGCTAAAAGTTGTGGGACACTTCCGTGTTaGACGAGTCCCTTTAACCAG +
Preference number: 4 (lower is better)
Translates to: MHNSSKRGHRWCLCAKSCGTLPC*TSPFNQ
Trigger: CTGGTTAAAGGGACTCGTTCAACACGGAAGTGTCCC...ACAACTTTTAGCACATAAACACCAACGATGGCCTCTTTTTGAGGAGTTATGCAT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000381042.9
CDS-3UTR GCA 90 bp AATTTTGATCCCACAAGTGAGGCAGATCCTGTTGTGAATGCCTGTTTTCAATTAACATACAGATCTAGCTaGCCTTTGTCCTGCGGGGAG +
Preference number: 4 (lower is better)
Translates to: NFDPTSEADPVVNACFQLTYRSS*PLSCGE
Trigger: CTCCCCGCAGGACAAAGGGCAGCTAGATCTGTATGT...TAATTGAAAACAGGCATTCACAACAGGATCTGCCTCACTTGTGGGATCAAAATT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000381042.9
CDS-3UTR GCA 90 bp ATGCATAACTCCTCAAAAAGAGGCCATCGTTGGTGTTTATGTGCTAAAAGTTGTACATACAGATCTAGCTaGCCTTTGTCCTGCGGGGAG +
Preference number: 4 (lower is better)
Translates to: MHNSSKRGHRWCLCAKSCTYRSS*PLSCGE
Trigger: CTCCCCGCAGGACAAAGGGCAGCTAGATCTGTATGT...ACAACTTTTAGCACATAAACACCAACGATGGCCTCTTTTTGAGGAGTTATGCAT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENST00000381042.9
ENST00000444736.5
ENST00000537427.5
CDS-3UTR CCA 90 bp GAGAGAGAGAGAGAGAGAGAGAGAATGAATGACAACCAGCTTGATAATCTCCTAAATCTCCTAGGCTTCTaGATATCTGCCCCTAACTGC +
Preference number: 4 (lower is better)
Translates to: ERERERERMNDNQLDNLLNLLGF*ISAPNC
Trigger: GCAGTTAGGGGCAGATATCCAGAAGCCTAGGAGATT...TAGGAGATTATCAAGCTGGTTGTCATTCATTCTCTCTCTCTCTCTCTCTCTCTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000381042.9
ENST00000444736.5
ENST00000537427.5
CDS-3UTR CCA 90 bp AATACTCAGAGAGGTATGGCGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAACAGTGTCAGTAAATTaGTACAAGCCCATACACAAG +
Preference number: 4 (lower is better)
Translates to: NTQRGMARERERERERERTVSVN*YKPIHK
Trigger: CTTGTGTATGGGCTTGTACCAATTTACTGACACTGT...TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCGCCATACCTCTCTGAGTATT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000381042.9
ENST00000444736.5
ENST00000537427.5
CDS-3UTR TCA 90 bp ATGCATAACTCCTCAAAAAGAGGCCATCGTTGGTGTTTATGTGCTAAAAGTTGTTTCTTAGTCGGGCCATaGAGTCATAACCGGGCGTTA +
Preference number: 4 (lower is better)
Translates to: MHNSSKRGHRWCLCAKSCFLVGP*SHNRAL
Trigger: TAACGCCCGGTTATGACTTCATGGCCCGACTAAGAA...ACAACTTTTAGCACATAAACACCAACGATGGCCTCTTTTTGAGGAGTTATGCAT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000381042.9
ENST00000444736.5
ENST00000537427.5
CDS-3UTR TCA 90 bp ATGCATAACTCCTCAAAAAGAGGCCATCGTTGGTGTTTATGTGCTAAAAGTTGTTTTAGGGGAGGAAGATaGGAGGGGATAAGCCTCTTC +
Preference number: 4 (lower is better)
Translates to: MHNSSKRGHRWCLCAKSCFRGGR*EGISLF
Trigger: GAAGAGGCTTATCCCCTCTCATCTTCCTCCCCTAAA...ACAACTTTTAGCACATAAACACCAACGATGGCCTCTTTTTGAGGAGTTATGCAT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 21 nt.
Matches the following 3 transcripts:
ENST00000381042.9
ENST00000444736.5
ENST00000537427.5
CDS-3UTR TCA 90 bp CTATTTCTCAAATCCTTCCTCTCCTACCTAGTTCCTTCAGTTCCAGAGCTACAGGAGAGAGAGAGAGAATaGATGACAACCAGCTTGATA +
Preference number: 4 (lower is better)
Translates to: LFLKSFLSYLVPSVPELQERERE*MTTSLI
Trigger: TATCAAGCTGGTTGTCATTCATTCTCTCTCTCTCTC...CTGTAGCTCTGGAACTGAAGGAACTAGGTAGGAGAGGAAGGATTTGAGAAATAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000381042.9
ENST00000444736.5
ENST00000537427.5
CDS-3UTR GCA 90 bp TGCGTGACAATTGAAGACATGGAATTAAATTGGTTTGTCTCTAACTGCCTCTTACCGTCCACCCACTTCTaGCCTTTGTATTCCACTAGC +
Preference number: 4 (lower is better)
Translates to: CVTIEDMELNWFVSNCLLPSTHF*PLYSTS
Trigger: GCTAGTGGAATACAAAGGGCAGAAGTGGGTGGACGG...TAAGAGGCAGTTAGAGACAAACCAATTTAATTCCATGTCTTCAATTGTCACGCA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000381042.9
ENST00000444736.5
ENST00000537427.5
CDS-3UTR GCA 90 bp AATACTCAGAGAGGTATGGCGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACAACATGATATCCTaGTTGGCGATATTAACATAC +
Preference number: 4 (lower is better)
Translates to: NTQRGMARERERERERERDNMIS*LAILTY
Trigger: GTATGTTAATATCGCCAAGCAGGATATCATGTTGTC...TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCGCCATACCTCTCTGAGTATT
43% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000381042.9
ENST00000444736.5
ENST00000537427.5
CDS-3UTR GCA 90 bp AGCAAAGGTAAGCAGAGCATGCTTGGTAGCATGCTCACAGGAGAATTTGGTGCATGGTTTGTCTCTAACTaGCTCTTAGTAATCAAGAGT +
Preference number: 4 (lower is better)
Translates to: SKGKQSMLGSMLTGEFGAWFVSN*LLVIKS
Trigger: ACTCTTGATTACTAAGAGGCAGTTAGAGACAAACCA...TGCACCAAATTCTCCTGTGAGCATGCTACCAAGCATGCTCTGCTTACCTTTGCT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000381042.9
CDS-3UTR GCA 90 bp AATACTCAGAGAGGTATGGCGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATGGTTTGTCTCTAACTaGCTCTTAGTAATCAAGAGT +
Preference number: 4 (lower is better)
Translates to: NTQRGMARERERERERERWFVSN*LLVIKS
Trigger: ACTCTTGATTACTAAGAGGCAGTTAGAGACAAACCA...TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCGCCATACCTCTCTGAGTATT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000381042.9
ENST00000444736.5
ENST00000537427.5
CDS-3UTR TCA 90 bp AATTTTGATCCCACAAGTGAGGCAGATCCTGTTGTGAATGCCTGTTTTCAATTACCCCAGCGAAGGCTTTaGCATCCTTCACAAGTTTTT +
Preference number: 4 (lower is better)
Translates to: NFDPTSEADPVVNACFQLPQRRL*HPSQVF
Trigger: AAAAACTTGTGAAGGATGTCAAAGCCTTCGCTGGGG...TAATTGAAAACAGGCATTCACAACAGGATCTGCCTCACTTGTGGGATCAAAATT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000381042.9
CDS-3UTR TCA 90 bp TGCGTGACAATTGAAGACATGGAATTAAATTGGTTTGTCTCTAACTGCCTCTTATTCTTAGTCGGGCCATaGAGTCATAACCGGGCGTTA +
Preference number: 4 (lower is better)
Translates to: CVTIEDMELNWFVSNCLLFLVGP*SHNRAL
Trigger: TAACGCCCGGTTATGACTTCATGGCCCGACTAAGAA...TAAGAGGCAGTTAGAGACAAACCAATTTAATTCCATGTCTTCAATTGTCACGCA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000381042.9
ENST00000444736.5
ENST00000537427.5
CDS-3UTR TCA 90 bp AAGAAATGCGTGACAATTGAAGACATGGAATTAAATTGGTTTGTCTCTAACTGCTGGTTTTGGCGTTGGTaGTGGATACGTGCAGTCGGT +
Preference number: 4 (lower is better)
Translates to: KKCVTIEDMELNWFVSNCWFWRW*WIRAVG
Trigger: ACCGACTGCACGTATCCATCACCAACGCCAAAACCA...GCAGTTAGAGACAAACCAATTTAATTCCATGTCTTCAATTGTCACGCATTTCTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000381042.9
ENST00000444736.5
ENST00000537427.5
CDS-3UTR TCA 90 bp GAGAGAGAGAGAGAGAGAGAGAGAATGAATGACAACCAGCTTGATAATCTCCTACACAAGTCCTCAAAGTaGTGGACAACTACTCAGAAA +
Preference number: 4 (lower is better)
Translates to: ERERERERMNDNQLDNLLHKSSK*WTTTQK
Trigger: TTTCTGAGTAGTTGTCCATCACTTTGAGGACTTGTG...TAGGAGATTATCAAGCTGGTTGTCATTCATTCTCTCTCTCTCTCTCTCTCTCTC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000381042.9
ENST00000444736.5
ENST00000537427.5
CDS-3UTR GCA 90 bp AAGAAATGCGTGACAATTGAAGACATGGAATTAAATTGGTTTGTCTCTAACTGCGCAAAGTGCAGATGCTaGCCCCAAGTGGTAAATGCC +
Preference number: 4 (lower is better)
Translates to: KKCVTIEDMELNWFVSNCAKCRC*PQVVNA
Trigger: GGCATTTACCACTTGGGGGCAGCATCTGCACTTTGC...GCAGTTAGAGACAAACCAATTTAATTCCATGTCTTCAATTGTCACGCATTTCTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000381042.9
ENST00000444736.5
CDS-3UTR GCA 90 bp ATGCATAACTCCTCAAAAAGAGGCCATCGTTGGTGTTTATGTGCTAAAAGTTGTTCTGCAAAGTGCAGATaGTGCCCCCAAGTGGTAAAT +
Preference number: 4 (lower is better)
Translates to: MHNSSKRGHRWCLCAKSCSAKCR*CPQVVN
Trigger: ATTTACCACTTGGGGGCAGCATCTGCACTTTGCAGA...ACAACTTTTAGCACATAAACACCAACGATGGCCTCTTTTTGAGGAGTTATGCAT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENST00000381042.9
ENST00000444736.5
CDS-3UTR GCA 90 bp AAGAAATGCGTGACAATTGAAGACATGGAATTAAATTGGTTTGTCTCTAACTGCTGCACTGGGAGCAACTaGACACACCTGTGGAAAGCA +
Preference number: 4 (lower is better)
Translates to: KKCVTIEDMELNWFVSNCCTGSN*THLWKA
Trigger: TGCTTTCCACAGGTGTGTGCAGTTGCTCCCAGTGCA...GCAGTTAGAGACAAACCAATTTAATTCCATGTCTTCAATTGTCACGCATTTCTT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000381042.9
ENST00000444736.5
ENST00000537427.5
CDS-3UTR CCA 90 bp TGCGTGACAATTGAAGACATGGAATTAAATTGGTTTGTCTCTAACTGCCTCTTAGCCACATATTCTCCATaGAACCTAAGTGGTGGCCCT +
Preference number: 4 (lower is better)
Translates to: CVTIEDMELNWFVSNCLLATYSP*NLSGGP
Trigger: AGGGCCACCACTTAGGTTCCATGGAGAATATGTGGC...TAAGAGGCAGTTAGAGACAAACCAATTTAATTCCATGTCTTCAATTGTCACGCA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000381042.9
ENST00000444736.5
ENST00000537427.5
3UTR CAA 72 bp TTCATTACACCGCTGTATTCCCCTCATGTAGGAAAGTaGCTGCAGACTGATACGTCAATGATCTTACAGTAT +
Preference number: 4 (lower is better)
Translates to: FITPLYSPHVGK*LQTDTSMILQY
Trigger: ATACTGTAAGATCATTGACGTATCAGTCTGCAGCAACTTTCCTACATGAGGGGAATACAGCGGTGTAATGAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000381042.9
CDS-3UTR TCA 90 bp ATGCATAACTCCTCAAAAAGAGGCCATCGTTGGTGTTTATGTGCTAAAAGTTGTCGAAAGACTGCCTTCTaGTTTCTTCGGCAAACTTGT +
Preference number: 4 (lower is better)
Translates to: MHNSSKRGHRWCLCAKSCRKTAF*FLRQTC
Trigger: ACAAGTTTGCCGAAGAAATCAGAAGGCAGTCTTTCG...ACAACTTTTAGCACATAAACACCAACGATGGCCTCTTTTTGAGGAGTTATGCAT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000381042.9
ENST00000444736.5
ENST00000537427.5
CDS-3UTR TCA 90 bp TACTCTAGAGTGGGTCTATGCATAACTCCTCAAAAAGAGGCCATCGTTGGTGTTAGTGGACATAACAATTaGGAATCTATCCACTTCATG +
Preference number: 4 (lower is better)
Translates to: YSRVGLCITPQKEAIVGVSGHNN*ESIHFM
Trigger: CATGAAGTGGATAGATTCTCAATTGTTATGTCCACT...AACACCAACGATGGCCTCTTTTTGAGGAGTTATGCATAGACCCACTCTAGAGTA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000381042.9
ENST00000444736.5
ENST00000537427.5
CDS-3UTR TCA 90 bp GACCATCATTACTCTAGAGTGGGTCTATGCATAACTCCTCAAAAAGAGGCCATCAGTGGACATAACAATTaGGAATCTATCCACTTCATG +
Preference number: 4 (lower is better)
Translates to: DHHYSRVGLCITPQKEAISGHNN*ESIHFM
Trigger: CATGAAGTGGATAGATTCTCAATTGTTATGTCCACT...GATGGCCTCTTTTTGAGGAGTTATGCATAGACCCACTCTAGAGTAATGATGGTC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000381042.9
ENST00000444736.5
ENST00000537427.5
CDS-3UTR GCA 90 bp CTATTTCTCAAATCCTTCCTCTCCTACCTAGTTCCTTCAGTTCCAGAGCTACAGAATGATAGGTTGATGTaGTTCATTCTAGCTGTAGCA +
Preference number: 4 (lower is better)
Translates to: LFLKSFLSYLVPSVPELQNDRLM*FILAVA
Trigger: TGCTACAGCTAGAATGAAGCACATCAACCTATCATT...CTGTAGCTCTGGAACTGAAGGAACTAGGTAGGAGAGGAAGGATTTGAGAAATAG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000381042.9
ENST00000444736.5
CDS-3UTR GCA 90 bp ATGCATAACTCCTCAAAAAGAGGCCATCGTTGGTGTTTATGTGCTAAAAGTTGTTCTTCTCTTGTCTGCTaGCATGTGAGACATGCCTTT +
Preference number: 4 (lower is better)
Translates to: MHNSSKRGHRWCLCAKSCSSLVC*HVRHAF
Trigger: AAAGGCATGTCTCACATGGCAGCAGACAAGAGAAGA...ACAACTTTTAGCACATAAACACCAACGATGGCCTCTTTTTGAGGAGTTATGCAT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000381042.9
ENST00000444736.5
ENST00000537427.5
CDS-3UTR GCA 90 bp ATGCATAACTCCTCAAAAAGAGGCCATCGTTGGTGTTTATGTGCTAAAAGTTGTTTTTCTTCTCTTGTCTaGTGCCATGTGAGACATGCC +
Preference number: 4 (lower is better)
Translates to: MHNSSKRGHRWCLCAKSCFSSLV*CHVRHA
Trigger: GGCATGTCTCACATGGCAGCAGACAAGAGAAGAAAA...ACAACTTTTAGCACATAAACACCAACGATGGCCTCTTTTTGAGGAGTTATGCAT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENST00000381042.9
ENST00000444736.5
ENST00000537427.5
CDS-3UTR CCA 90 bp TGCGTGACAATTGAAGACATGGAATTAAATTGGTTTGTCTCTAACTGCCTCTTAGCCTCCTCAGTCATGTaGAACTGTGAGCCCATTAAA +
Preference number: 4 (lower is better)
Translates to: CVTIEDMELNWFVSNCLLASSVM*NCEPIK
Trigger: TTTAATGGGCTCACAGTTCCACATGACTGAGGAGGC...TAAGAGGCAGTTAGAGACAAACCAATTTAATTCCATGTCTTCAATTGTCACGCA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000381042.9
ENST00000444736.5
ENST00000537427.5
CDS-3UTR CCA 90 bp TGCGTGACAATTGAAGACATGGAATTAAATTGGTTTGTCTCTAACTGCCTCTTAGAGGTAACTGAATCATaGAGGCAGGTCTTTCCCATG +
Preference number: 4 (lower is better)
Translates to: CVTIEDMELNWFVSNCLLEVTES*RQVFPM
Trigger: CATGGGAAAGACCTGCCTCCATGATTCAGTTACCTC...TAAGAGGCAGTTAGAGACAAACCAATTTAATTCCATGTCTTCAATTGTCACGCA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000381042.9
ENST00000444736.5
ENST00000537427.5
CDS-3UTR CCA 90 bp TGCGTGACAATTGAAGACATGGAATTAAATTGGTTTGTCTCTAACTGCCTCTTAATACTCAGAGAGGTATaGCGAGAGAGAGAGAGAGAG +
Preference number: 4 (lower is better)
Translates to: CVTIEDMELNWFVSNCLLILREV*RERERE
Trigger: CTCTCTCTCTCTCTCTCGCCATACCTCTCTGAGTAT...TAAGAGGCAGTTAGAGACAAACCAATTTAATTCCATGTCTTCAATTGTCACGCA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000381042.9
ENST00000444736.5
ENST00000537427.5
CDS-3UTR CCA 90 bp TACTCTAGAGTGGGTCTATGCATAACTCCTCAAAAAGAGGCCATCGTTGGTGTTGACATGGAATTAAATTaGTTTGTCTCTAACTGCCTC +
Preference number: 4 (lower is better)
Translates to: YSRVGLCITPQKEAIVGVDMELN*FVSNCL
Trigger: GAGGCAGTTAGAGACAAACCAATTTAATTCCATGTC...AACACCAACGATGGCCTCTTTTTGAGGAGTTATGCATAGACCCACTCTAGAGTA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000381042.9
ENST00000444736.5
ENST00000537427.5
CDS-3UTR CCA 90 bp GAAATTGCCCCCACAGGGAATTGGGAATTTATCAAGCTGCCAATCACAGTAATTTGTTTTCAATTAGTATaGCTGCATGAGCACACACTC +
Preference number: 4 (lower is better)
Translates to: EIAPTGNWEFIKLPITVICFQLV*LHEHTL
Trigger: GAGTGTGTGCTCATGCAGCCATACTAATTGAAAACA...AATTACTGTGATTGGCAGCTTGATAAATTCCCAATTCCCTGTGGGGGCAATTTC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000381042.9
CDS-3UTR TCA 90 bp ATGCATAACTCCTCAAAAAGAGGCCATCGTTGGTGTTTATGTGCTAAAAGTTGTCACAAGTCCTCAAAGTaGTGGACAACTACTCAGAAA +
Preference number: 4 (lower is better)
Translates to: MHNSSKRGHRWCLCAKSCHKSSK*WTTTQK
Trigger: TTTCTGAGTAGTTGTCCATCACTTTGAGGACTTGTG...ACAACTTTTAGCACATAAACACCAACGATGGCCTCTTTTTGAGGAGTTATGCAT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000381042.9
ENST00000444736.5
ENST00000537427.5
CDS-3UTR GCA 90 bp GAAATTGCCCCCACAGGGAATTGGGAATTTATCAAGCTGCCAATCACAGTAATTAATGATAGGTTGATGTaGTTCATTCTAGCTGTAGCA +
Preference number: 4 (lower is better)
Translates to: EIAPTGNWEFIKLPITVINDRLM*FILAVA
Trigger: TGCTACAGCTAGAATGAAGCACATCAACCTATCATT...AATTACTGTGATTGGCAGCTTGATAAATTCCCAATTCCCTGTGGGGGCAATTTC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000381042.9
CDS-3UTR GCA 90 bp TGCGTGACAATTGAAGACATGGAATTAAATTGGTTTGTCTCTAACTGCCTCTTATCTTCTCTTGTCTGCTaGCATGTGAGACATGCCTTT +
Preference number: 4 (lower is better)
Translates to: CVTIEDMELNWFVSNCLLSSLVC*HVRHAF
Trigger: AAAGGCATGTCTCACATGGCAGCAGACAAGAGAAGA...TAAGAGGCAGTTAGAGACAAACCAATTTAATTCCATGTCTTCAATTGTCACGCA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000381042.9
ENST00000444736.5
ENST00000537427.5
CDS-3UTR GCA 90 bp TGCGTGACAATTGAAGACATGGAATTAAATTGGTTTGTCTCTAACTGCCTCTTATTTTCTTCTCTTGTCTaGTGCCATGTGAGACATGCC +
Preference number: 4 (lower is better)
Translates to: CVTIEDMELNWFVSNCLLFSSLV*CHVRHA
Trigger: GGCATGTCTCACATGGCAGCAGACAAGAGAAGAAAA...TAAGAGGCAGTTAGAGACAAACCAATTTAATTCCATGTCTTCAATTGTCACGCA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000381042.9
ENST00000444736.5
ENST00000537427.5
CDS-3UTR CCA 90 bp AAGAAATGCGTGACAATTGAAGACATGGAATTAAATTGGTTTGTCTCTAACTGCGCCTCCTCAGTCATGTaGAACTGTGAGCCCATTAAA +
Preference number: 4 (lower is better)
Translates to: KKCVTIEDMELNWFVSNCASSVM*NCEPIK
Trigger: TTTAATGGGCTCACAGTTCCACATGACTGAGGAGGC...GCAGTTAGAGACAAACCAATTTAATTCCATGTCTTCAATTGTCACGCATTTCTT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000381042.9
ENST00000444736.5
ENST00000537427.5
CDS-3UTR CCA 90 bp GAGAGAGAGAGAGAGAGAGAGAGAATGAATGACAACCAGCTTGATAATCTCCTATCTCAAGAGATCCGATaGTTTTATAAAGGGGAGTTT +
Preference number: 4 (lower is better)
Translates to: ERERERERMNDNQLDNLLSQEIR*FYKGEF
Trigger: AAACTCCCCTTTATAAAACCATCGGATCTCTTGAGA...TAGGAGATTATCAAGCTGGTTGTCATTCATTCTCTCTCTCTCTCTCTCTCTCTC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000381042.9
ENST00000444736.5
ENST00000537427.5
CDS-3UTR CCA 90 bp AAGAAATGCGTGACAATTGAAGACATGGAATTAAATTGGTTTGTCTCTAACTGCGAGGTAACTGAATCATaGAGGCAGGTCTTTCCCATG +
Preference number: 4 (lower is better)
Translates to: KKCVTIEDMELNWFVSNCEVTES*RQVFPM
Trigger: CATGGGAAAGACCTGCCTCCATGATTCAGTTACCTC...GCAGTTAGAGACAAACCAATTTAATTCCATGTCTTCAATTGTCACGCATTTCTT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000381042.9
ENST00000444736.5
ENST00000537427.5
CDS-3UTR CCA 90 bp TATTCCCCTCATGTAGGAAAGTTGCTGCAGACTGATACGTCAATGATCTTACAGAAAAGAGGCCATCGTTaGTGTTTATGTGCTAAAAGT +
Preference number: 4 (lower is better)
Translates to: YSPHVGKLLQTDTSMILQKRGHR*CLCAKS
Trigger: ACTTTTAGCACATAAACACCAACGATGGCCTCTTTT...CTGTAAGATCATTGACGTATCAGTCTGCAGCAACTTTCCTACATGAGGGGAATA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000381042.9
CDS-3UTR CCA 90 bp GAGAGAGAGAGAGAGAGAGAGAGAATGAATGACAACCAGCTTGATAATCTCCTAAAAAGAGGCCATCGTTaGTGTTTATGTGCTAAAAGT +
Preference number: 4 (lower is better)
Translates to: ERERERERMNDNQLDNLLKRGHR*CLCAKS
Trigger: ACTTTTAGCACATAAACACCAACGATGGCCTCTTTT...TAGGAGATTATCAAGCTGGTTGTCATTCATTCTCTCTCTCTCTCTCTCTCTCTC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000381042.9
ENST00000444736.5
ENST00000537427.5
CDS-3UTR CCA 90 bp GAGAGAGAGAGAGAGAGAGAGAGAATGAATGACAACCAGCTTGATAATCTCCTAAAACATATCAGTATCTaGGTCAGAAACTCCTTTCAG +
Preference number: 4 (lower is better)
Translates to: ERERERERMNDNQLDNLLKHISI*VRNSFQ
Trigger: CTGAAAGGAGTTTCTGACCCAGATACTGATATGTTT...TAGGAGATTATCAAGCTGGTTGTCATTCATTCTCTCTCTCTCTCTCTCTCTCTC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000381042.9
CDS-3UTR GCA 90 bp AATTTTGATCCCACAAGTGAGGCAGATCCTGTTGTGAATGCCTGTTTTCAATTAGACAACATGATATCCTaGTTGGCGATATTAACATAC +
Preference number: 4 (lower is better)
Translates to: NFDPTSEADPVVNACFQLDNMIS*LAILTY
Trigger: GTATGTTAATATCGCCAAGCAGGATATCATGTTGTC...TAATTGAAAACAGGCATTCACAACAGGATCTGCCTCACTTGTGGGATCAAAATT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000381042.9
CDS-3UTR GCA 90 bp ATGCATAACTCCTCAAAAAGAGGCCATCGTTGGTGTTTATGTGCTAAAAGTTGTTGGTTTGTCTCTAACTaGCTCTTAGTAATCAAGAGT +
Preference number: 4 (lower is better)
Translates to: MHNSSKRGHRWCLCAKSCWFVSN*LLVIKS
Trigger: ACTCTTGATTACTAAGAGGCAGTTAGAGACAAACCA...ACAACTTTTAGCACATAAACACCAACGATGGCCTCTTTTTGAGGAGTTATGCAT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000381042.9
ENST00000444736.5
ENST00000537427.5
CDS-3UTR GCA 90 bp ATGCATAACTCCTCAAAAAGAGGCCATCGTTGGTGTTTATGTGCTAAAAGTTGTATGCCAGTTCTACAATaGCTCAAAATTTTGATCCCA +
Preference number: 4 (lower is better)
Translates to: MHNSSKRGHRWCLCAKSCMPVLQ*LKILIP
Trigger: TGGGATCAAAATTTTGAGGCATTGTAGAACTGGCAT...ACAACTTTTAGCACATAAACACCAACGATGGCCTCTTTTTGAGGAGTTATGCAT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENST00000381042.9
CDS-3UTR TCA 90 bp AAGAAATGCGTGACAATTGAAGACATGGAATTAAATTGGTTTGTCTCTAACTGCAAAGTTGCTGCAGACTaGTACGTCAATGATCTTACA +
Preference number: 4 (lower is better)
Translates to: KKCVTIEDMELNWFVSNCKVAAD*YVNDLT
Trigger: TGTAAGATCATTGACGTATCAGTCTGCAGCAACTTT...GCAGTTAGAGACAAACCAATTTAATTCCATGTCTTCAATTGTCACGCATTTCTT
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000381042.9
CDS-3UTR CCA 90 bp TGCGTGACAATTGAAGACATGGAATTAAATTGGTTTGTCTCTAACTGCCTCTTATCTCAAGAGATCCGATaGTTTTATAAAGGGGAGTTT +
Preference number: 4 (lower is better)
Translates to: CVTIEDMELNWFVSNCLLSQEIR*FYKGEF
Trigger: AAACTCCCCTTTATAAAACCATCGGATCTCTTGAGA...TAAGAGGCAGTTAGAGACAAACCAATTTAATTCCATGTCTTCAATTGTCACGCA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000381042.9
ENST00000444736.5
ENST00000537427.5
CDS-3UTR CCA 90 bp AAGAAATGCGTGACAATTGAAGACATGGAATTAAATTGGTTTGTCTCTAACTGCACAGTGTCAGTAAATTaGTACAAGCCCATACACAAG +
Preference number: 4 (lower is better)
Translates to: KKCVTIEDMELNWFVSNCTVSVN*YKPIHK
Trigger: CTTGTGTATGGGCTTGTACCAATTTACTGACACTGT...GCAGTTAGAGACAAACCAATTTAATTCCATGTCTTCAATTGTCACGCATTTCTT
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000381042.9
ENST00000444736.5
ENST00000537427.5
CDS-3UTR CCA 90 bp TGCGTGACAATTGAAGACATGGAATTAAATTGGTTTGTCTCTAACTGCCTCTTAGACATGGAATTAAATTaGTTTGTCTCTAACTGCCTC +
Preference number: 4 (lower is better)
Translates to: CVTIEDMELNWFVSNCLLDMELN*FVSNCL
Trigger: GAGGCAGTTAGAGACAAACCAATTTAATTCCATGTC...TAAGAGGCAGTTAGAGACAAACCAATTTAATTCCATGTCTTCAATTGTCACGCA
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000381042.9
ENST00000444736.5
ENST00000537427.5
CDS CCA 90 bp GCAGCCCCGGGACACTTCCGTGTTGAACGAGTCCCTTTAACCAGATaGCGGGGCCGGGCCGTCACTCAACGCCATTCCGCCACCAAGGCC +
Preference number: 5 (lower is better)
Translates to: AAPGHFRVERVPLTR*RGRAVTQRHSATKA
Trigger: GGCCTTGGTGGCGGAATGGCGTTGAGTGACGGCCCGGCCCCGCCATCTGGTTAAAGGGACTCGTTCAACACGGAAGTGTCCCGGGGCTGC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000381042.9
CDS TCA 90 bp GATCTAGCTGCCCTTTGTCCTGCGGGGAGATGTCCAGTCGTCCACTaGAGGGGGAGATGGTTACTGTCCGGCCGACGGGCAGGATGGGAA +
Preference number: 5 (lower is better)
Translates to: DLAALCPAGRCPVVH*RGRWLLSGRRAGWE
Trigger: TTCCCATCCTGCCCGTCGGCCGGACAGTAACCATCTCCCCCTTCAGTGGACGACTGGACATCTCCCCGCAGGACAAAGGGCAGCTAGATC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000381042.9
ENST00000444736.5
ENST00000537427.5
CDS TCA 90 bp AGATGGTTACTGTCCGGCCGACGGGCAGGATGGGAAGAGCGTTGGTaGGGCCTCCGTCCACCCACTTCTGCCCTTTGTATTCCACTAGCT +
Preference number: 5 (lower is better)
Translates to: RWLLSGRRAGWEERW*GLRPPTSALCIPLA
Trigger: AGCTAGTGGAATACAAAGGGCAGAAGTGGGTGGACGGAGGCCTCACCAACGCTCTTCCCATCCTGCCCGTCGGCCGGACAGTAACCATCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000381042.9
ENST00000442940.1
ENST00000444736.5
ENST00000537427.5
CDS TCA 90 bp TTCATTCTAGCTGTAGCACAATGCAGCCCCGGGACACTTCCGTGTTaGACGAGTCCCTTTAACCAGATGGCGGGGCCGGGCCGTCACTCA +
Preference number: 5 (lower is better)
Translates to: FILAVAQCSPGTLPC*TSPFNQMAGPGRHS
Trigger: TGAGTGACGGCCCGGCCCCGCCATCTGGTTAAAGGGACTCGTTCAACACGGAAGTGTCCCGGGGCTGCATTGTGCTACAGCTAGAATGAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000381042.9
CDS-3UTR CAA 90 bp TGGTGCACCAGCCCCGGAGAGCGCCTAGTGTGCACCAAGTATGTGTTTCATTACAGATCTAGCTGCCCTTaGTCCTGCGGGGAGATGTCC +
Preference number: 5 (lower is better)
Translates to: WCTSPGERLVCTKYVFHYRSSCP*SCGEMS
Trigger: GGACATCTCCCCGCAGGACAAAGGGCAGCTAGATCT...GTAATGAAACACATACTTGGTGCACACTAGGCGCTCTCCGGGGCTGGTGCACCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000381042.9
CDS GCA 90 bp TCCTGCTTGGCGATATTAACATACAGATCTAGCTGCCCTTTGTCCTaGGGGGAGATGTCCAGTCGTCCACTGAAGGGGGAGATGGTTACT +
Preference number: 5 (lower is better)
Translates to: SCLAILTYRSSCPLS*GEMSSRPLKGEMVT
Trigger: AGTAACCATCTCCCCCTTCAGTGGACGACTGGACATCTCCCCGCAGGACAAAGGGCAGCTAGATCTGTATGTTAATATCGCCAAGCAGGA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENST00000381042.9
ENST00000444736.5
ENST00000537427.5
CDS-3UTR CAA 90 bp AATACTCAGAGAGGTATGGCGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGATCTAGCTGCCCTTaGTCCTGCGGGGAGATGTCC +
Preference number: 5 (lower is better)
Translates to: NTQRGMARERERERERERRSSCP*SCGEMS
Trigger: GGACATCTCCCCGCAGGACAAAGGGCAGCTAGATCT...TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCGCCATACCTCTCTGAGTATT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000381042.9
ENST00000444736.5
ENST00000537427.5
CDS-3UTR CAA 90 bp CTATTTCTCAAATCCTTCCTCTCCTACCTAGTTCCTTCAGTTCCAGAGCTACAGCACAATTGCCACACGTaGTGGGAGGGACCCAGTGGG +
Preference number: 5 (lower is better)
Translates to: LFLKSFLSYLVPSVPELQHNCHT*WEGPSG
Trigger: CCCACTGGGTCCCTCCCACAACGTGTGGCAATTGTG...CTGTAGCTCTGGAACTGAAGGAACTAGGTAGGAGAGGAAGGATTTGAGAAATAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000381042.9
ENST00000444736.5
ENST00000537427.5
CDS-3UTR CAA 90 bp TACTCTAGAGTGGGTCTATGCATAACTCCTCAAAAAGAGGCCATCGTTGGTGTTCACAATTGCCACACGTaGTGGGAGGGACCCAGTGGG +
Preference number: 5 (lower is better)
Translates to: YSRVGLCITPQKEAIVGVHNCHT*WEGPSG
Trigger: CCCACTGGGTCCCTCCCACAACGTGTGGCAATTGTG...AACACCAACGATGGCCTCTTTTTGAGGAGTTATGCATAGACCCACTCTAGAGTA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000381042.9
ENST00000444736.5
ENST00000537427.5
CDS-3UTR CAA 90 bp GCTTCTGGATATCTGCCCCTAACTGCACTGGGAGCAACTGCACACACCTGTGGACAATGCCTCAAAATTTaGATCCCACAAGTGAGGCAG +
Preference number: 5 (lower is better)
Translates to: ASGYLPLTALGATAHTCGQCLKI*IPQVRQ
Trigger: CTGCCTCACTTGTGGGATCAAAATTTTGAGGCATTG...TCCACAGGTGTGTGCAGTTGCTCCCAGTGCAGTTAGGGGCAGATATCCAGAAGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000381042.9
CDS-3UTR CAA 90 bp GAAATTGCCCCCACAGGGAATTGGGAATTTATCAAGCTGCCAATCACAGTAATTCACAATTGCCACACGTaGTGGGAGGGACCCAGTGGG +
Preference number: 5 (lower is better)
Translates to: EIAPTGNWEFIKLPITVIHNCHT*WEGPSG
Trigger: CCCACTGGGTCCCTCCCACAACGTGTGGCAATTGTG...AATTACTGTGATTGGCAGCTTGATAAATTCCCAATTCCCTGTGGGGGCAATTTC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000381042.9
CDS-3UTR CAA 90 bp CTATTTCTCAAATCCTTCCTCTCCTACCTAGTTCCTTCAGTTCCAGAGCTACAGTGCTCACAGGAGAATTaGGTGCACCAGCCCCGGAGA +
Preference number: 5 (lower is better)
Translates to: LFLKSFLSYLVPSVPELQCSQEN*VHQPRR
Trigger: TCTCCGGGGCTGGTGCACCAAATTCTCCTGTGAGCA...CTGTAGCTCTGGAACTGAAGGAACTAGGTAGGAGAGGAAGGATTTGAGAAATAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000381042.9
CDS-3UTR CAA 90 bp AATACTCAGAGAGGTATGGCGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCCCCAGCGAAGGCTTaGACATCCTTCACAAGTTTT +
Preference number: 5 (lower is better)
Translates to: NTQRGMARERERERERERAPAKA*TSFTSF
Trigger: AAAACTTGTGAAGGATGTCAAAGCCTTCGCTGGGGC...TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCGCCATACCTCTCTGAGTATT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000381042.9
ENST00000444736.5
CDS-3UTR CAA 90 bp GAGAGAGAGAGAGAGAGAGAGAGAATGAATGACAACCAGCTTGATAATCTCCTAAGATCTAGCTGCCCTTaGTCCTGCGGGGAGATGTCC +
Preference number: 5 (lower is better)
Translates to: ERERERERMNDNQLDNLLRSSCP*SCGEMS
Trigger: GGACATCTCCCCGCAGGACAAAGGGCAGCTAGATCT...TAGGAGATTATCAAGCTGGTTGTCATTCATTCTCTCTCTCTCTCTCTCTCTCTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000381042.9
ENST00000444736.5
ENST00000537427.5
CDS-3UTR CAA 90 bp AATACTCAGAGAGGTATGGCGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAACCCACTTCTGCCCTTaGTATTCCACTAGCTTCAGT +
Preference number: 5 (lower is better)
Translates to: NTQRGMARERERERERERTHFCP*YSTSFS
Trigger: ACTGAAGCTAGTGGAATACAAAGGGCAGAAGTGGGT...TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCGCCATACCTCTCTGAGTATT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000381042.9
ENST00000444736.5
ENST00000537427.5
CDS-3UTR CAA 90 bp CTATTTCTCAAATCCTTCCTCTCCTACCTAGTTCCTTCAGTTCCAGAGCTACAGGGAAAAAGGGCTTGGTaGAGTCTCACCAGGTTTGCC +
Preference number: 5 (lower is better)
Translates to: LFLKSFLSYLVPSVPELQGKRAW*SLTRFA
Trigger: GGCAAACCTGGTGAGACTCAACCAAGCCCTTTTTCC...CTGTAGCTCTGGAACTGAAGGAACTAGGTAGGAGAGGAAGGATTTGAGAAATAG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000381042.9
ENST00000444736.5
ENST00000537427.5
CDS-3UTR CAA 90 bp GACCATCATTACTCTAGAGTGGGTCTATGCATAACTCCTCAAAAAGAGGCCATCTGGGGGAAAAAGGGCTaGGTTGAGTCTCACCAGGTT +
Preference number: 5 (lower is better)
Translates to: DHHYSRVGLCITPQKEAIWGKKG*VESHQV
Trigger: AACCTGGTGAGACTCAACCAAGCCCTTTTTCCCCCA...GATGGCCTCTTTTTGAGGAGTTATGCATAGACCCACTCTAGAGTAATGATGGTC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 15 nt.
Matches the following 3 transcripts:
ENST00000381042.9
ENST00000444736.5
ENST00000537427.5
CDS-3UTR CAA 90 bp TACTCTAGAGTGGGTCTATGCATAACTCCTCAAAAAGAGGCCATCGTTGGTGTTGTAAGCAGAGCATGCTaGGTAGCATGCTCACAGGAG +
Preference number: 5 (lower is better)
Translates to: YSRVGLCITPQKEAIVGVVSRAC*VACSQE
Trigger: CTCCTGTGAGCATGCTACCAAGCATGCTCTGCTTAC...AACACCAACGATGGCCTCTTTTTGAGGAGTTATGCATAGACCCACTCTAGAGTA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000381042.9
CDS-3UTR CAA 90 bp GACCATCATTACTCTAGAGTGGGTCTATGCATAACTCCTCAAAAAGAGGCCATCTGCCCCCACAGGGAATaGGGAATTTATCAAGCTGCC +
Preference number: 5 (lower is better)
Translates to: DHHYSRVGLCITPQKEAICPHRE*GIYQAA
Trigger: GGCAGCTTGATAAATTCCCAATTCCCTGTGGGGGCA...GATGGCCTCTTTTTGAGGAGTTATGCATAGACCCACTCTAGAGTAATGATGGTC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENST00000381042.9
CDS-3UTR CAA 90 bp TATTCCCCTCATGTAGGAAAGTTGCTGCAGACTGATACGTCAATGATCTTACAGTGGGGGAAAAAGGGCTaGGTTGAGTCTCACCAGGTT +
Preference number: 5 (lower is better)
Translates to: YSPHVGKLLQTDTSMILQWGKKG*VESHQV
Trigger: AACCTGGTGAGACTCAACCAAGCCCTTTTTCCCCCA...CTGTAAGATCATTGACGTATCAGTCTGCAGCAACTTTCCTACATGAGGGGAATA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENST00000381042.9
CDS-3UTR CAA 90 bp GAGAGAGAGAGAGAGAGAGAGAGAATGAATGACAACCAGCTTGATAATCTCCTAGCCCCAGCGAAGGCTTaGACATCCTTCACAAGTTTT +
Preference number: 5 (lower is better)
Translates to: ERERERERMNDNQLDNLLAPAKA*TSFTSF
Trigger: AAAACTTGTGAAGGATGTCAAAGCCTTCGCTGGGGC...TAGGAGATTATCAAGCTGGTTGTCATTCATTCTCTCTCTCTCTCTCTCTCTCTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000381042.9
ENST00000444736.5
CDS-3UTR CAA 90 bp AATACTCAGAGAGGTATGGCGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACCTTTCTTTTGTAAATaGCCCAGTCTTGGGTATGTC +
Preference number: 5 (lower is better)
Translates to: NTQRGMARERERERERERPFFCK*PSLGYV
Trigger: GACATACCCAAGACTGGGCAATTTACAAAAGAAAGG...TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCGCCATACCTCTCTGAGTATT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000381042.9
ENST00000444736.5
ENST00000537427.5
CDS-3UTR CAA 90 bp AATACTCAGAGAGGTATGGCGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACAGTGTCAGTAAATaGGTACAAGCCCATACACAA +
Preference number: 5 (lower is better)
Translates to: NTQRGMARERERERERERDSVSK*VQAHTQ
Trigger: TTGTGTATGGGCTTGTACCAATTTACTGACACTGTC...TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCGCCATACCTCTCTGAGTATT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000381042.9
ENST00000444736.5
ENST00000537427.5
CDS-3UTR CAA 90 bp AATTTTGATCCCACAAGTGAGGCAGATCCTGTTGTGAATGCCTGTTTTCAATTAGGAAAAAGGGCTTGGTaGAGTCTCACCAGGTTTGCC +
Preference number: 5 (lower is better)
Translates to: NFDPTSEADPVVNACFQLGKRAW*SLTRFA
Trigger: GGCAAACCTGGTGAGACTCAACCAAGCCCTTTTTCC...TAATTGAAAACAGGCATTCACAACAGGATCTGCCTCACTTGTGGGATCAAAATT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000381042.9
CDS-3UTR CAA 90 bp ATGCATAACTCCTCAAAAAGAGGCCATCGTTGGTGTTTATGTGCTAAAAGTTGTGGAAAAAGGGCTTGGTaGAGTCTCACCAGGTTTGCC +
Preference number: 5 (lower is better)
Translates to: MHNSSKRGHRWCLCAKSCGKRAW*SLTRFA
Trigger: GGCAAACCTGGTGAGACTCAACCAAGCCCTTTTTCC...ACAACTTTTAGCACATAAACACCAACGATGGCCTCTTTTTGAGGAGTTATGCAT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENST00000381042.9
ENST00000444736.5
ENST00000537427.5
CDS-3UTR CAA 90 bp GACCATCATTACTCTAGAGTGGGTCTATGCATAACTCCTCAAAAAGAGGCCATCTCCTTCACAAGTTTTTaGCCATGTCTGCAAAGTGCA +
Preference number: 5 (lower is better)
Translates to: DHHYSRVGLCITPQKEAISFTSF*PCLQSA
Trigger: TGCACTTTGCAGACATGGCAAAAAACTTGTGAAGGA...GATGGCCTCTTTTTGAGGAGTTATGCATAGACCCACTCTAGAGTAATGATGGTC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000381042.9
ENST00000444736.5
CDS-3UTR CAA 90 bp TGCGTGACAATTGAAGACATGGAATTAAATTGGTTTGTCTCTAACTGCCTCTTATGGGGGAAAAAGGGCTaGGTTGAGTCTCACCAGGTT +
Preference number: 5 (lower is better)
Translates to: CVTIEDMELNWFVSNCLLWGKKG*VESHQV
Trigger: AACCTGGTGAGACTCAACCAAGCCCTTTTTCCCCCA...TAAGAGGCAGTTAGAGACAAACCAATTTAATTCCATGTCTTCAATTGTCACGCA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENST00000381042.9
ENST00000444736.5
ENST00000537427.5
CDS-3UTR CAA 90 bp CTATTTCTCAAATCCTTCCTCTCCTACCTAGTTCCTTCAGTTCCAGAGCTACAGGACAGTGTCAGTAAATaGGTACAAGCCCATACACAA +
Preference number: 5 (lower is better)
Translates to: LFLKSFLSYLVPSVPELQDSVSK*VQAHTQ
Trigger: TTGTGTATGGGCTTGTACCAATTTACTGACACTGTC...CTGTAGCTCTGGAACTGAAGGAACTAGGTAGGAGAGGAAGGATTTGAGAAATAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000381042.9
ENST00000444736.5
ENST00000537427.5
CDS-3UTR CAA 90 bp TACTCTAGAGTGGGTCTATGCATAACTCCTCAAAAAGAGGCCATCGTTGGTGTTGACAGTGTCAGTAAATaGGTACAAGCCCATACACAA +
Preference number: 5 (lower is better)
Translates to: YSRVGLCITPQKEAIVGVDSVSK*VQAHTQ
Trigger: TTGTGTATGGGCTTGTACCAATTTACTGACACTGTC...AACACCAACGATGGCCTCTTTTTGAGGAGTTATGCATAGACCCACTCTAGAGTA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000381042.9
ENST00000444736.5
ENST00000537427.5
CDS-3UTR CAA 90 bp GAGAGAGAGAGAGAGAGAGAGAGAATGAATGACAACCAGCTTGATAATCTCCTATCCTTCACAAGTTTTTaGCCATGTCTGCAAAGTGCA +
Preference number: 5 (lower is better)
Translates to: ERERERERMNDNQLDNLLSFTSF*PCLQSA
Trigger: TGCACTTTGCAGACATGGCAAAAAACTTGTGAAGGA...TAGGAGATTATCAAGCTGGTTGTCATTCATTCTCTCTCTCTCTCTCTCTCTCTC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000381042.9
ENST00000444736.5
CDS-3UTR CAA 90 bp CTATTTCTCAAATCCTTCCTCTCCTACCTAGTTCCTTCAGTTCCAGAGCTACAGAACATGATATCCTGCTaGGCGATATTAACATACAGA +
Preference number: 5 (lower is better)
Translates to: LFLKSFLSYLVPSVPELQNMISC*AILTYR
Trigger: TCTGTATGTTAATATCGCCAAGCAGGATATCATGTT...CTGTAGCTCTGGAACTGAAGGAACTAGGTAGGAGAGGAAGGATTTGAGAAATAG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000381042.9
ENST00000444736.5
ENST00000537427.5
CDS-3UTR CAA 90 bp GACCATCATTACTCTAGAGTGGGTCTATGCATAACTCCTCAAAAAGAGGCCATCAACATGATATCCTGCTaGGCGATATTAACATACAGA +
Preference number: 5 (lower is better)
Translates to: DHHYSRVGLCITPQKEAINMISC*AILTYR
Trigger: TCTGTATGTTAATATCGCCAAGCAGGATATCATGTT...GATGGCCTCTTTTTGAGGAGTTATGCATAGACCCACTCTAGAGTAATGATGGTC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000381042.9
ENST00000444736.5
ENST00000537427.5
CDS-3UTR CAA 90 bp GAGAGAGAGAGAGAGAGAGAGAGAATGAATGACAACCAGCTTGATAATCTCCTAAACATGATATCCTGCTaGGCGATATTAACATACAGA +
Preference number: 5 (lower is better)
Translates to: ERERERERMNDNQLDNLLNMISC*AILTYR
Trigger: TCTGTATGTTAATATCGCCAAGCAGGATATCATGTT...TAGGAGATTATCAAGCTGGTTGTCATTCATTCTCTCTCTCTCTCTCTCTCTCTC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000381042.9
ENST00000444736.5
ENST00000537427.5
CDS-3UTR CAA 90 bp AATTTTGATCCCACAAGTGAGGCAGATCCTGTTGTGAATGCCTGTTTTCAATTACCTTTCTTTTGTAAATaGCCCAGTCTTGGGTATGTC +
Preference number: 5 (lower is better)
Translates to: NFDPTSEADPVVNACFQLPFFCK*PSLGYV
Trigger: GACATACCCAAGACTGGGCAATTTACAAAAGAAAGG...TAATTGAAAACAGGCATTCACAACAGGATCTGCCTCACTTGTGGGATCAAAATT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000381042.9
CDS-3UTR CAA 90 bp ATGCATAACTCCTCAAAAAGAGGCCATCGTTGGTGTTTATGTGCTAAAAGTTGTCCTTTCTTTTGTAAATaGCCCAGTCTTGGGTATGTC +
Preference number: 5 (lower is better)
Translates to: MHNSSKRGHRWCLCAKSCPFFCK*PSLGYV
Trigger: GACATACCCAAGACTGGGCAATTTACAAAAGAAAGG...ACAACTTTTAGCACATAAACACCAACGATGGCCTCTTTTTGAGGAGTTATGCAT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENST00000381042.9
ENST00000444736.5
ENST00000537427.5
CDS-3UTR CAA 90 bp AAGAAATGCGTGACAATTGAAGACATGGAATTAAATTGGTTTGTCTCTAACTGCCCTCATGTAGGAAAGTaGCTGCAGACTGATACGTCA +
Preference number: 5 (lower is better)
Translates to: KKCVTIEDMELNWFVSNCPHVGK*LQTDTS
Trigger: TGACGTATCAGTCTGCAGCAACTTTCCTACATGAGG...GCAGTTAGAGACAAACCAATTTAATTCCATGTCTTCAATTGTCACGCATTTCTT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000381042.9
CDS TCA 72 bp GCCCTTTGTCCTGCGGGGAGATGTCCAGTCGTCCACTaGAGGGGGAGATGGTTACTGTCCGGCCGACGGGCA +
Preference number: 6 (lower is better)
Translates to: ALCPAGRCPVVH*RGRWLLSGRRA
Trigger: TGCCCGTCGGCCGGACAGTAACCATCTCCCCCTTCAGTGGACGACTGGACATCTCCCCGCAGGACAAAGGGC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000381042.9
ENST00000444736.5
ENST00000537427.5
CDS TCA 72 bp GCTGTAGCACAATGCAGCCCCGGGACACTTCCGTGTTaGACGAGTCCCTTTAACCAGATGGCGGGGCCGGGC +
Preference number: 6 (lower is better)
Translates to: AVAQCSPGTLPC*TSPFNQMAGPG
Trigger: GCCCGGCCCCGCCATCTGGTTAAAGGGACTCGTTCAACACGGAAGTGTCCCGGGGCTGCATTGTGCTACAGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000381042.9
CDS CCA 72 bp GGACACTTCCGTGTTGAACGAGTCCCTTTAACCAGATaGCGGGGCCGGGCCGTCACTCAACGCCATTCCGCC +
Preference number: 6 (lower is better)
Translates to: GHFRVERVPLTR*RGRAVTQRHSA
Trigger: GGCGGAATGGCGTTGAGTGACGGCCCGGCCCCGCCATCTGGTTAAAGGGACTCGTTCAACACGGAAGTGTCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000381042.9
CDS CAA 90 bp GGGGAGATGGTTACTGTCCGGCCGACGGGCAGGATGGGAAGAGCGTaGGTGAGGCCTCCGTCCACCCACTTCTGCCCTTTGTATTCCACT +
Preference number: 6 (lower is better)
Translates to: GEMVTVRPTGRMGRA*VRPPSTHFCPLYST
Trigger: AGTGGAATACAAAGGGCAGAAGTGGGTGGACGGAGGCCTCACCAACGCTCTTCCCATCCTGCCCGTCGGCCGGACAGTAACCATCTCCCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000381042.9
ENST00000442940.1
ENST00000444736.5
ENST00000537427.5
CDS CAA 90 bp ATGATATCCTGCTTGGCGATATTAACATACAGATCTAGCTGCCCTTaGTCCTGCGGGGAGATGTCCAGTCGTCCACTGAAGGGGGAGATG +
Preference number: 6 (lower is better)
Translates to: MISCLAILTYRSSCP*SCGEMSSRPLKGEM
Trigger: CATCTCCCCCTTCAGTGGACGACTGGACATCTCCCCGCAGGACAAAGGGCAGCTAGATCTGTATGTTAATATCGCCAAGCAGGATATCAT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000381042.9
ENST00000444736.5
ENST00000537427.5
CDS GCA 72 bp CCCAGAAATCCACACGCTGCAAATGATAGGTTGATGTaGTTCATTCTAGCTGTAGCACAATGCAGCCCCGGG +
Preference number: 6 (lower is better)
Translates to: PRNPHAANDRLM*FILAVAQCSPG
Trigger: CCCGGGGCTGCATTGTGCTACAGCTAGAATGAAGCACATCAACCTATCATTTGCAGCGTGTGGATTTCTGGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000381042.9
CDS CAA 72 bp TGCTTGGCGATATTAACATACAGATCTAGCTGCCCTTaGTCCTGCGGGGAGATGTCCAGTCGTCCACTGAAG +
Preference number: 6 (lower is better)
Translates to: CLAILTYRSSCP*SCGEMSSRPLK
Trigger: CTTCAGTGGACGACTGGACATCTCCCCGCAGGACAAAGGGCAGCTAGATCTGTATGTTAATATCGCCAAGCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000381042.9
ENST00000444736.5
ENST00000537427.5
CDS GCA 72 bp CCCAGAAATCCACACGCTGCAAATGATAGGTTGATGTaGTTCATTCTAGCTGTAGCACTGCGAGCAACTGAC +
Preference number: 6 (lower is better)
Translates to: PRNPHAANDRLM*FILAVALRATD
Trigger: GTCAGTTGCTCGCAGTGCTACAGCTAGAATGAAGCACATCAACCTATCATTTGCAGCGTGTGGATTTCTGGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000442940.1
CDS CAA 72 bp CTCACCAGGTTTGCCAGGGACAACATGATATCCTGCTaGGCGATATTAACATACAGATCTAGCTGCCCTTTG +
Preference number: 6 (lower is better)
Translates to: LTRFARDNMISC*AILTYRSSCPL
Trigger: CAAAGGGCAGCTAGATCTGTATGTTAATATCGCCAAGCAGGATATCATGTTGTCCCTGGCAAACCTGGTGAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000381042.9
ENST00000444736.5
ENST00000537427.5