Pregenerated sensors for PNMA6F (Homo sapiens)
Ensembl gene IDs: ENSG00000225110Ensembl transcript IDs: ENST00000436629.3
Found 11 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
Type | Sensor | Details |
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3UTR TCA 90 bp | GTCACGGGCACCATCGTGGTCATGCTCACCATAGCAGTCACAGGATaGGCGTCCATCGTGCCCTGGCGCCTCCTTCCACCATCTCCCAGG | + |
Preference number: 1 (lower is better) Translates to: VTGTIVVMLTIAVTG*ASIVPWRLLPPSPR Trigger: CCTGGGAGATGGTGGAAGGAGGCGCCAGGGCACGATGGACGCTCATCCTGTGACTGCTATGGTGAGCATGACCACGATGGTGCCCGTGAC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000436629.3 |
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3UTR TCA 72 bp | ACCATCGTGGTCATGCTCACCATAGCAGTCACAGGATaGGCGTCCATCGTGCCCTGGCGCCTCCTTCCACCA | + |
Preference number: 3 (lower is better) Translates to: TIVVMLTIAVTG*ASIVPWRLLPP Trigger: TGGTGGAAGGAGGCGCCAGGGCACGATGGACGCTCATCCTGTGACTGCTATGGTGAGCATGACCACGATGGT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000436629.3 |
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CDS GCA 90 bp | TGGAGCAGGAGGGTGGAAGATCTCGCCTCAGTCACGCGGCCGCGCTaGGCAGCGCAGGGGTCTCCAAAGCCCGCTGTGCTAAGACTACAG | + |
Preference number: 5 (lower is better) Translates to: WSRRVEDLASVTRPR*AAQGSPKPAVLRLQ Trigger: CTGTAGTCTTAGCACAGCGGGCTTTGGAGACCCCTGCGCTGCGCAGCGCGGCCGCGTGACTGAGGCGAGATCTTCCACCCTCCTGCTCCA 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000436629.3 |
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CDS TCA 90 bp | AGCAGAGAGCGCTCTGCGTTCACACCCATCCTCCTGCACCAGTCCTaGAGCATCGCCAGAGCTATCGCAGAGGACTTGAGGGAGGGAGCC | + |
Preference number: 5 (lower is better) Translates to: SRERSAFTPILLHQS*SIARAIAEDLREGA Trigger: GGCTCCCTCCCTCAAGTCCTCTGCGATAGCTCTGGCGATGCTTCAGGACTGGTGCAGGAGGATGGGTGTGAACGCAGAGCGCTCTCTGCT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000436629.3 |
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CDS GCA 90 bp | AACTTCATCCGCGAGGTCATCCATGTATCCCGGCTCCTAAACACCTaGCCCAGCGCCGTCAGGCAGTCCTGCGCAGAGAAGTCTGGATCT | + |
Preference number: 5 (lower is better) Translates to: NFIREVIHVSRLLNT*PSAVRQSCAEKSGS Trigger: AGATCCAGACTTCTCTGCGCAGGACTGCCTGACGGCGCTGGGGCAGGTGTTTAGGAGCCGGGATACATGGATGACCTCGCGGATGAAGTT 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000436629.3 |
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CDS GCA 72 bp | AGGGTGGAAGATCTCGCCTCAGTCACGCGGCCGCGCTaGGCAGCGCAGGGGTCTCCAAAGCCCGCTGTGCTA | + |
Preference number: 6 (lower is better) Translates to: RVEDLASVTRPR*AAQGSPKPAVL Trigger: TAGCACAGCGGGCTTTGGAGACCCCTGCGCTGCGCAGCGCGGCCGCGTGACTGAGGCGAGATCTTCCACCCT 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000436629.3 |
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CDS GCA 72 bp | CGCGAGGTCATCCATGTATCCCGGCTCCTAAACACCTaGCCCAGCGCCGTCAGGCAGTCCTGCGCAGAGAAG | + |
Preference number: 6 (lower is better) Translates to: REVIHVSRLLNT*PSAVRQSCAEK Trigger: CTTCTCTGCGCAGGACTGCCTGACGGCGCTGGGGCAGGTGTTTAGGAGCCGGGATACATGGATGACCTCGCG 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000436629.3 |
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CDS CAA 72 bp | AAGGCTGCCCTGGCCCCGAGCTCCTTTCTGAAGACCTaGATGAGCACTCGGTACCTGCCCAGGGGCGACAGG | + |
Preference number: 6 (lower is better) Translates to: KAALAPSSFLKT*MSTRYLPRGDR Trigger: CCTGTCGCCCCTGGGCAGGTACCGAGTGCTCATCAAGGTCTTCAGAAAGGAGCTCGGGGCCAGGGCAGCCTT 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000436629.3 |
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CDS GCA 72 bp | TGCCTCACCTGCTGCTCCTGCCTCACCTACACCTCCTaGCTCACCTATACCTCCTGCCTCATCTTCACCTGC | + |
Preference number: 6 (lower is better) Translates to: CLTCCSCLTYTS*LTYTSCLIFTC Trigger: GCAGGTGAAGATGAGGCAGGAGGTATAGGTGAGGCAGGAGGTGTAGGTGAGGCAGGAGCAGCAGGTGAGGCA 60% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000436629.3 |
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CDS TCA 72 bp | ACTCATGTTCCTCGCAGTCGTCAGGGATATCCAGGATaGGCAGAGAGCGCTCTGCGTTCACACCCATCCTCC | + |
Preference number: 6 (lower is better) Translates to: THVPRSRQGYPG*AESALRSHPSS Trigger: GGAGGATGGGTGTGAACGCAGAGCGCTCTCTGCTCATCCTGGATATCCCTGACGACTGCGAGGAACATGAGT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000436629.3 |
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CDS CCA 72 bp | CCCCCTTTGCCTGCTATTTGGCGGGGAATCAAGCTTTaGTTTAAACCCTCAGCGAATTCCACCAAGGCTGCC | + |
Preference number: 6 (lower is better) Translates to: PPLPAIWRGIKL*FKPSANSTKAA Trigger: GGCAGCCTTGGTGGAATTCGCTGAGGGTTTAAACCAAAGCTTGATTCCCCGCCAAATAGCAGGCAAAGGGGG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000436629.3 |