RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for PMPCA (Homo sapiens)

Ensembl gene IDs: ENSG00000165688

Ensembl transcript IDs: ENST00000371717.8, ENST00000371720.5, ENST00000399219.7, ENST00000444897.2, ENST00000462616.1, ENST00000610649.4, ENST00000612553.4, ENST00000620412.4, ENST00000622209.4

Found 170 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp CCGAGAGAGGCTGGACACTCGCTTGAGGATTTAAGCGGGGGCTCCTaGGGGAAGGACGAGGGCCCACACGGGACAGGGCAAGTGCCCGGG +
Preference number: 1 (lower is better)
Translates to: PREAGHSLEDLSGGS*GKDEGPHGTGQVPG
Trigger: CCCGGGCACTTGCCCTGTCCCGTGTGGGCCCTCGTCCTTCCCTCAGGAGCCCCCGCTTAAATCCTCAAGCGAGTGTCCAGCCTCTCTCGG
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000444897.2
3UTR TCA 90 bp CAGAGGGCAAACGCGTGTCACACGAGCGCGCCACGGCCCCCACGCTaGGGCTGCATCAGTAAACACACGGAGGGGGCGGCTGGTCTGTAC +
Preference number: 1 (lower is better)
Translates to: QRANACHTSAPRPPR*GCISKHTEGAAGLY
Trigger: GTACAGACCAGCCGCCCCCTCCGTGTGTTTACTGATGCAGCCTCAGCGTGGGGGCCGTGGCGCGCTCGTGTGACACGCGTTTGCCCTCTG
67% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENST00000444897.2
3UTR GCA 90 bp AGGGCCGCATGGACAGAAGGGTGGGGTGAGAGAAGGCCAAAGGGCTaGACCCAGGAACCCCAGGACAGGAGTGATAGGGTCCAGGTGGGT +
Preference number: 1 (lower is better)
Translates to: RAAWTEGWGERRPKG*TQEPQDRSDRVQVG
Trigger: ACCCACCTGGACCCTATCACTCCTGTCCTGGGGTTCCTGGGTGCAGCCCTTTGGCCTTCTCTCACCCCACCCTTCTGTCCATGCGGCCCT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000444897.2
3UTR TCA 90 bp GGCAAGTGCCCGGGACTCCAGGCCTGGAAAGGAGATGCCCACAGGTaGCACCATAAGCCCGAGCCACCCCAACGTAATAGGCAGCCTTGC +
Preference number: 1 (lower is better)
Translates to: GKCPGLQAWKGDAHR*HHKPEPPQRNRQPC
Trigger: GCAAGGCTGCCTATTACGTTGGGGTGGCTCGGGCTTATGGTGTCACCTGTGGGCATCTCCTTTCCAGGCCTGGAGTCCCGGGCACTTGCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000444897.2
3UTR-3UTR CCA 90 bp GGCAAACGCGTGTCACACGAGCGCGCCACGGCCCCCACGCTGAGGCTGCATCAGCGACCGCCCTCCTCGTaGCACGCTGCACTCCAGCGC +
Preference number: 2 (lower is better)
Translates to: GKRVSHERATAPTLRLHQRPPSS*HAALQR
Trigger: GCGCTGGAGTGCAGCGTGCCACGAGGAGGGCGGTCG...CTGATGCAGCCTCAGCGTGGGGGCCGTGGCGCGCTCGTGTGACACGCGTTTGCC
71% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000444897.2
3UTR-3UTR TCA 90 bp TGCAGAGGGCAAACGCGTGTCACACGAGCGCGCCACGGCCCCCACGCTGAGGCTTTAAGCGGGGGCTCCTaGGGGAAGGACGAGGGCCCA +
Preference number: 2 (lower is better)
Translates to: CRGQTRVTRARHGPHAEALSGGS*GKDEGP
Trigger: TGGGCCCTCGTCCTTCCCTCAGGAGCCCCCGCTTAA...AGCCTCAGCGTGGGGGCCGTGGCGCGCTCGTGTGACACGCGTTTGCCCTCTGCA
69% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENST00000444897.2
3UTR-3UTR GCA 90 bp GGTGGCCTCCGGGAGGCTTTGATAGGTCAGCCTTTGCTGCCTCCCAGCTCAGGGCTGCGGGGCCCCATGTaGCCACAGCCCGAGGAGGGA +
Preference number: 2 (lower is better)
Translates to: GGLREALIGQPLLPPSSGLRGPM*PQPEEG
Trigger: TCCCTCCTCGGGCTGTGGGCACATGGGGCCCCGCAG...CCCTGAGCTGGGAGGCAGCAAAGGCTGACCTATCAAAGCCTCCCGGAGGCCACC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000371717.8
ENST00000399219.7
ENST00000444897.2
3UTR-3UTR GCA 90 bp CTGTGTGCACGCGCGTGGAGCGCGCTCCTTGGAGCTGACCGGGCCCTTACCTTCACCAGGGAAGCTGTGTaGACGCGCGTGGAGCGCGCT +
Preference number: 2 (lower is better)
Translates to: LCARAWSALLGADRALTFTREAV*TRVERA
Trigger: AGCGCGCTCCACGCGCGTGCACACAGCTTCCCTGGT...GAAGGTAAGGGCCCGGTCAGCTCCAAGGAGCGCGCTCCACGCGCGTGCACACAG
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000371717.8
ENST00000399219.7
ENST00000444897.2
3UTR-3UTR CCA 90 bp CTGTGTGCACGCGCGTGGAGCGCGCTCCTTGGAGCTGACCGGGCCCTTACCTTCCTGTGTGCACGCGCGTaGAGCGCGCTCCTTGGAGCT +
Preference number: 2 (lower is better)
Translates to: LCARAWSALLGADRALTFLCARA*SALLGA
Trigger: AGCTCCAAGGAGCGCGCTCCACGCGCGTGCACACAG...GAAGGTAAGGGCCCGGTCAGCTCCAAGGAGCGCGCTCCACGCGCGTGCACACAG
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000371717.8
ENST00000399219.7
ENST00000444897.2
3UTR-3UTR TCA 90 bp ACCACTCACTCACGCTGTGCTGCTGATGGGGGCACCTGGGCCCAAAGGCAGCCACCGGAAACCTGGGGCTaGGACTCCTGCCCGAGAGCC +
Preference number: 2 (lower is better)
Translates to: TTHSRCAADGGTWAQRQPPETWG*DSCPRA
Trigger: GGCTCTCGGGCAGGAGTCTCAGCCCCAGGTTTCCGG...TGGCTGCCTTTGGGCCCAGGTGCCCCCATCAGCAGCACAGCGTGAGTGAGTGGT
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000444897.2
3UTR-3UTR CCA 90 bp CCATGTGCCCACAGCCCGAGGAGGGAAGCACCGACCGCCCTCCTCGTGGCACGCCTTCCTGGCTTGCGGTaGTCAGGCTCGATACTGACT +
Preference number: 2 (lower is better)
Translates to: PCAHSPRREAPTALLVARLPGLR*SGSILT
Trigger: AGTCAGTATCGAGCCTGACCACCGCAAGCCAGGAAG...GCGTGCCACGAGGAGGGCGGTCGGTGCTTCCCTCCTCGGGCTGTGGGCACATGG
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000371717.8
ENST00000399219.7
ENST00000444897.2
3UTR-3UTR CCA 90 bp CTGTGTGCACGCGCGTGGAGCGCGCTCCTTGGAGCTGACCGGGCCCTTACCTTCGTCAGAGGTGAGTCCTaGTACCCAGCACGGTGGCCT +
Preference number: 2 (lower is better)
Translates to: LCARAWSALLGADRALTFVRGES*YPARWP
Trigger: AGGCCACCGTGCTGGGTACCAGGACTCACCTCTGAC...GAAGGTAAGGGCCCGGTCAGCTCCAAGGAGCGCGCTCCACGCGCGTGCACACAG
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000371717.8
ENST00000399219.7
ENST00000444897.2
3UTR-3UTR CCA 90 bp ACCACTCACTCACGCTGTGCTGCTGATGGGGGCACCTGGGCCCAAAGGCAGCCATGGTACCCAGCACGGTaGCCTCCGGGAGGCTTTGAT +
Preference number: 2 (lower is better)
Translates to: TTHSRCAADGGTWAQRQPWYPAR*PPGGFD
Trigger: ATCAAAGCCTCCCGGAGGCCACCGTGCTGGGTACCA...TGGCTGCCTTTGGGCCCAGGTGCCCCCATCAGCAGCACAGCGTGAGTGAGTGGT
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000444897.2
3UTR-3UTR CCA 90 bp CTGTGTGCACGCGCGTGGAGCGCGCTCCTTGGAGCTGACCGGGCCCTTACCTTCGGATGTGCTCATACGTaGGCAGGTCAGTCAGGTCAC +
Preference number: 2 (lower is better)
Translates to: LCARAWSALLGADRALTFGCAHT*AGQSGH
Trigger: GTGACCTGACTGACCTGCCCACGTATGAGCACATCC...GAAGGTAAGGGCCCGGTCAGCTCCAAGGAGCGCGCTCCACGCGCGTGCACACAG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000444897.2
3UTR-3UTR CCA 90 bp ACCACTCACTCACGCTGTGCTGCTGATGGGGGCACCTGGGCCCAAAGGCAGCCACTTCCTGGCTTGCGGTaGTCAGGCTCGATACTGACT +
Preference number: 2 (lower is better)
Translates to: TTHSRCAADGGTWAQRQPLPGLR*SGSILT
Trigger: AGTCAGTATCGAGCCTGACCACCGCAAGCCAGGAAG...TGGCTGCCTTTGGGCCCAGGTGCCCCCATCAGCAGCACAGCGTGAGTGAGTGGT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000444897.2
3UTR-3UTR GCA 90 bp CTGTGTGCACGCGCGTGGAGCGCGCTCCTTGGAGCTGACCGGGCCCTTACCTTCCCCAGAAGAGTCCGATaGACATACAACTTGGCAGTT +
Preference number: 2 (lower is better)
Translates to: LCARAWSALLGADRALTFPRRVR*TYNLAV
Trigger: AACTGCCAAGTTGTATGTGCATCGGACTCTTCTGGG...GAAGGTAAGGGCCCGGTCAGCTCCAAGGAGCGCGCTCCACGCGCGTGCACACAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000444897.2
3UTR-3UTR GCA 90 bp TTCACATCTTCCGGCTTCACGTTGCCTAGTGCAGAGGGCAAACGCGTGTCACACAGAAGGCCAAAGGGCTaGACCCAGGAACCCCAGGAC +
Preference number: 2 (lower is better)
Translates to: FTSSGFTLPSAEGKRVSHRRPKG*TQEPQD
Trigger: GTCCTGGGGTTCCTGGGTGCAGCCCTTTGGCCTTCT...GTGTGACACGCGTTTGCCCTCTGCACTAGGCAACGTGAAGCCGGAAGATGTGAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000444897.2
3UTR-3UTR TCA 90 bp ACAGGAGTGATAGGGTCCAGGTGGGTCTGTTTTCTACAGAAAACGAGGCCCGAGGGAGATGCCCACAGGTaGCACCATAAGCCCGAGCCA +
Preference number: 2 (lower is better)
Translates to: TGVIGSRWVCFLQKTRPEGDAHR*HHKPEP
Trigger: TGGCTCGGGCTTATGGTGTCACCTGTGGGCATCTCC...CTCGGGCCTCGTTTTCTGTAGAAAACAGACCCACCTGGACCCTATCACTCCTGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000444897.2
3UTR-3UTR GCA 90 bp TTCACATCTTCCGGCTTCACGTTGCCTAGTGCAGAGGGCAAACGCGTGTCACACCGTAATAGGCAGCCTTaGCAGGTTTTAAGCCTGTCC +
Preference number: 2 (lower is better)
Translates to: FTSSGFTLPSAEGKRVSHRNRQP*QVLSLS
Trigger: GGACAGGCTTAAAACCTGGCAAGGCTGCCTATTACG...GTGTGACACGCGTTTGCCCTCTGCACTAGGCAACGTGAAGCCGGAAGATGTGAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000444897.2
3UTR CAA 90 bp CAGGTTTTAAGCCTGTCCCCCAGAAGAGTCCGATGCACATACAACTaGGCAGTTTCAGGAAATTCAGACCTCCTAAGGTCACTCATGGGG +
Preference number: 2 (lower is better)
Translates to: QVLSLSPRRVRCTYN*AVSGNSDLLRSLMG
Trigger: CCCCATGAGTGACCTTAGGAGGTCTGAATTTCCTGAAACTGCCAAGTTGTATGTGCATCGGACTCTTCTGGGGGACAGGCTTAAAACCTG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000444897.2
3UTR-3UTR GCA 90 bp AGCCTGTCCCCCAGAAGAGTCCGATGCACATACAACTTGGCAGTTTCAGGAAATGGCATTCCGAGCCACTaGTACTCCACGTACAATGTA +
Preference number: 2 (lower is better)
Translates to: SLSPRRVRCTYNLAVSGNGIPSH*YSTYNV
Trigger: TACATTGTACGTGGAGTAGCAGTGGCTCGGAATGCC...ATTTCCTGAAACTGCCAAGTTGTATGTGCATCGGACTCTTCTGGGGGACAGGCT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000444897.2
3UTR-3UTR CAA 90 bp GCAGAGGGCAAACGCGTGTCACACGAGCGCGCCACGGCCCCCACGCTGAGGCTGCGTGGAGCGCGCTCCTaGGAGCTGACCGGGCCCTTA +
Preference number: 3 (lower is better)
Translates to: AEGKRVSHERATAPTLRLRGARS*ELTGPL
Trigger: TAAGGGCCCGGTCAGCTCCAAGGAGCGCGCTCCACG...CAGCCTCAGCGTGGGGGCCGTGGCGCGCTCGTGTGACACGCGTTTGCCCTCTGC
71% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000444897.2
3UTR-3UTR CAA 90 bp CTGTGTGCACGCGCGTGGAGCGCGCTCCTTGGAGCTGACCGGGCCCTTACCTTCCGTGGAGCGCGCTCCTaGGAGCTGACCGGGCCCTTA +
Preference number: 3 (lower is better)
Translates to: LCARAWSALLGADRALTFRGARS*ELTGPL
Trigger: TAAGGGCCCGGTCAGCTCCAAGGAGCGCGCTCCACG...GAAGGTAAGGGCCCGGTCAGCTCCAAGGAGCGCGCTCCACGCGCGTGCACACAG
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000371717.8
ENST00000399219.7
ENST00000444897.2
3UTR-3UTR CAA 90 bp GCAGAGGGCAAACGCGTGTCACACGAGCGCGCCACGGCCCCCACGCTGAGGCTGGGCCTCCGGGAGGCTTaGATAGGTCAGCCTTTGCTG +
Preference number: 3 (lower is better)
Translates to: AEGKRVSHERATAPTLRLGLREA*IGQPLL
Trigger: CAGCAAAGGCTGACCTATCAAAGCCTCCCGGAGGCC...CAGCCTCAGCGTGGGGGCCGTGGCGCGCTCGTGTGACACGCGTTTGCCCTCTGC
68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000444897.2
3UTR TCA 72 bp AACGCGTGTCACACGAGCGCGCCACGGCCCCCACGCTaGGGCTGCATCAGTAAACACACGGAGGGGGCGGCT +
Preference number: 3 (lower is better)
Translates to: NACHTSAPRPPR*GCISKHTEGAA
Trigger: AGCCGCCCCCTCCGTGTGTTTACTGATGCAGCCTCAGCGTGGGGGCCGTGGCGCGCTCGTGTGACACGCGTT
68% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENST00000444897.2
3UTR-3UTR CAA 90 bp CTGTGTGCACGCGCGTGGAGCGCGCTCCTTGGAGCTGACCGGGCCCTTACCTTCGGCCTCCGGGAGGCTTaGATAGGTCAGCCTTTGCTG +
Preference number: 3 (lower is better)
Translates to: LCARAWSALLGADRALTFGLREA*IGQPLL
Trigger: CAGCAAAGGCTGACCTATCAAAGCCTCCCGGAGGCC...GAAGGTAAGGGCCCGGTCAGCTCCAAGGAGCGCGCTCCACGCGCGTGCACACAG
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000371717.8
ENST00000399219.7
ENST00000444897.2
3UTR TCA 72 bp GCTGGACACTCGCTTGAGGATTTAAGCGGGGGCTCCTaGGGGAAGGACGAGGGCCCACACGGGACAGGGCAA +
Preference number: 3 (lower is better)
Translates to: AGHSLEDLSGGS*GKDEGPHGTGQ
Trigger: TTGCCCTGTCCCGTGTGGGCCCTCGTCCTTCCCTCAGGAGCCCCCGCTTAAATCCTCAAGCGAGTGTCCAGC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000444897.2
3UTR CCA 72 bp ACCACTCACTCACGCTGTGCTGCTGATGGGGGCACCTaGGCCCAAAGGCAGCCACTGGGTGTAGCCAAGGGT +
Preference number: 3 (lower is better)
Translates to: TTHSRCAADGGT*AQRQPLGVAKG
Trigger: ACCCTTGGCTACACCCAGTGGCTGCCTTTGGGCCCAGGTGCCCCCATCAGCAGCACAGCGTGAGTGAGTGGT
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000444897.2
3UTR-3UTR CAA 90 bp TGCAGAGGGCAAACGCGTGTCACACGAGCGCGCCACGGCCCCCACGCTGAGGCTGGTGCTGTGGCGACATaGTTTGCACCGTTTATACAA +
Preference number: 3 (lower is better)
Translates to: CRGQTRVTRARHGPHAEAGAVAT*FAPFIQ
Trigger: TTGTATAAACGGTGCAAACAATGTCGCCACAGCACC...AGCCTCAGCGTGGGGGCCGTGGCGCGCTCGTGTGACACGCGTTTGCCCTCTGCA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000444897.2
3UTR-3UTR CAA 90 bp GCCCACAGCCCGAGGAGGGAAGCACCGACCGCCCTCCTCGTGGCACGCTGCACTCCACTGATCGGCACATaGAGTTCCAAAAGAATGCAA +
Preference number: 3 (lower is better)
Translates to: AHSPRREAPTALLVARCTPLIGT*SSKRMQ
Trigger: TTGCATTCTTTTGGAACTCAATGTGCCGATCAGTGG...AGTGCAGCGTGCCACGAGGAGGGCGGTCGGTGCTTCCCTCCTCGGGCTGTGGGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000371717.8
ENST00000399219.7
ENST00000444897.2
3UTR TCA 72 bp CCGGGACTCCAGGCCTGGAAAGGAGATGCCCACAGGTaGCACCATAAGCCCGAGCCACCCCAACGTAATAGG +
Preference number: 3 (lower is better)
Translates to: PGLQAWKGDAHR*HHKPEPPQRNR
Trigger: CCTATTACGTTGGGGTGGCTCGGGCTTATGGTGTCACCTGTGGGCATCTCCTTTCCAGGCCTGGAGTCCCGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000444897.2
3UTR-3UTR CAA 90 bp CTGTGTGCACGCGCGTGGAGCGCGCTCCTTGGAGCTGACCGGGCCCTTACCTTCGGTGCTGTGGCGACATaGTTTGCACCGTTTATACAA +
Preference number: 3 (lower is better)
Translates to: LCARAWSALLGADRALTFGAVAT*FAPFIQ
Trigger: TTGTATAAACGGTGCAAACAATGTCGCCACAGCACC...GAAGGTAAGGGCCCGGTCAGCTCCAAGGAGCGCGCTCCACGCGCGTGCACACAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000371717.8
ENST00000399219.7
ENST00000444897.2
3UTR-3UTR CAA 90 bp CCCCATGTGCCCACAGCCCGAGGAGGGAAGCACCGACCGCCCTCCTCGTGGCACCGATGCACATACAACTaGGCAGTTTCAGGAAATTCA +
Preference number: 3 (lower is better)
Translates to: PHVPTARGGKHRPPSSWHRCTYN*AVSGNS
Trigger: TGAATTTCCTGAAACTGCCAAGTTGTATGTGCATCG...GTGCCACGAGGAGGGCGGTCGGTGCTTCCCTCCTCGGGCTGTGGGCACATGGGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000444897.2
3UTR TCA 72 bp CAGAAAACGAGGCCCGAGAGAGGCTGGACACTCGCTTaGGGATTTAAGCGGGGGCTCCTGAGGGAAGGACGA +
Preference number: 3 (lower is better)
Translates to: QKTRPERGWTLA*GFKRGLLREGR
Trigger: TCGTCCTTCCCTCAGGAGCCCCCGCTTAAATCCTCAAGCGAGTGTCCAGCCTCTCTCGGGCCTCGTTTTCTG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000444897.2
3UTR-3UTR CAA 90 bp GGTGGCCTCCGGGAGGCTTTGATAGGTCAGCCTTTGCTGCCTCCCAGCTCAGGGGGTGCTGTGGCGACATaGTTTGCACCGTTTATACAA +
Preference number: 3 (lower is better)
Translates to: GGLREALIGQPLLPPSSGGAVAT*FAPFIQ
Trigger: TTGTATAAACGGTGCAAACAATGTCGCCACAGCACC...CCCTGAGCTGGGAGGCAGCAAAGGCTGACCTATCAAAGCCTCCCGGAGGCCACC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000371717.8
ENST00000399219.7
ENST00000444897.2
3UTR-3UTR CAA 90 bp GGTGGCCTCCGGGAGGCTTTGATAGGTCAGCCTTTGCTGCCTCCCAGCTCAGGGCCACTGATCGGCACATaGAGTTCCAAAAGAATGCAA +
Preference number: 3 (lower is better)
Translates to: GGLREALIGQPLLPPSSGPLIGT*SSKRMQ
Trigger: TTGCATTCTTTTGGAACTCAATGTGCCGATCAGTGG...CCCTGAGCTGGGAGGCAGCAAAGGCTGACCTATCAAAGCCTCCCGGAGGCCACC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000371717.8
ENST00000399219.7
ENST00000444897.2
3UTR TCA 72 bp GGTGTAGCCAAGGGTGAGTCCACAAGTGACAGACGTTaGGTTCTCAGTAAATGGGGACATGGCAATGACTTA +
Preference number: 3 (lower is better)
Translates to: GVAKGESTSDRR*VLSKWGHGNDL
Trigger: TAAGTCATTGCCATGTCCCCATTTACTGAGAACTCAACGTCTGTCACTTGTGGACTCACCCTTGGCTACACC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000444897.2
CDS-3UTR GCA 90 bp CCATGTGCCCACAGCCCGAGGAGGGAAGCACCGACCGCCCTCCTCGTGGCACGCAGGCCCACCACGGCCTaGGGGAGGGCGAGACGGCCT +
Preference number: 4 (lower is better)
Translates to: PCAHSPRREAPTALLVARRPTTA*GRARRP
Trigger: AGGCCGTCTCGCCCTCCCGCAGGCCGTGGTGGGCCT...GCGTGCCACGAGGAGGGCGGTCGGTGCTTCCCTCCTCGGGCTGTGGGCACATGG
73% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000444897.2
CDS-3UTR CCA 90 bp CCATGTGCCCACAGCCCGAGGAGGGAAGCACCGACCGCCCTCCTCGTGGCACGCCCCCCGAGGGCCGCATaGACAGAAGGGTGGGGTGAG +
Preference number: 4 (lower is better)
Translates to: PCAHSPRREAPTALLVARPPRAA*TEGWGE
Trigger: CTCACCCCACCCTTCTGTCCATGCGGCCCTCGGGGG...GCGTGCCACGAGGAGGGCGGTCGGTGCTTCCCTCCTCGGGCTGTGGGCACATGG
71% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENST00000444897.2
CDS-3UTR TCA 90 bp GCAGAGGGCAAACGCGTGTCACACGAGCGCGCCACGGCCCCCACGCTGAGGCTGTTAAGCGGGGGCTCCTaGGGGAAGGACGAGGGCCCA +
Preference number: 4 (lower is better)
Translates to: AEGKRVSHERATAPTLRLLSGGS*GKDEGP
Trigger: TGGGCCCTCGTCCTTCCCTCAGGAGCCCCCGCTTAA...CAGCCTCAGCGTGGGGGCCGTGGCGCGCTCGTGTGACACGCGTTTGCCCTCTGC
70% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENST00000444897.2
CDS-3UTR GCA 90 bp GCCCACAGCCCGAGGAGGGAAGCACCGACCGCCCTCCTCGTGGCACGCTGCACTAATATCCACGGCCTCTaGGCTCCCCCAGGCCGGCTG +
Preference number: 4 (lower is better)
Translates to: AHSPRREAPTALLVARCTNIHGL*APPGRL
Trigger: CAGCCGGCCTGGGGGAGCGCAGAGGCCGTGGATATT...AGTGCAGCGTGCCACGAGGAGGGCGGTCGGTGCTTCCCTCCTCGGGCTGTGGGC
70% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000371717.8
ENST00000399219.7
CDS-3UTR GCA 90 bp CCATGTGCCCACAGCCCGAGGAGGGAAGCACCGACCGCCCTCCTCGTGGCACGCACCAGGGAAGCTGTGTaGACGCGCGTGGAGCGCGCT +
Preference number: 4 (lower is better)
Translates to: PCAHSPRREAPTALLVARTREAV*TRVERA
Trigger: AGCGCGCTCCACGCGCGTGCACACAGCTTCCCTGGT...GCGTGCCACGAGGAGGGCGGTCGGTGCTTCCCTCCTCGGGCTGTGGGCACATGG
70% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000371717.8
ENST00000399219.7
ENST00000444897.2
CDS-3UTR GCA 90 bp CCCCATGTGCCCACAGCCCGAGGAGGGAAGCACCGACCGCCCTCCTCGTGGCACACCAGGGAAGCTGTGTaGACGCGCGTGGAGCGCGCT +
Preference number: 4 (lower is better)
Translates to: PHVPTARGGKHRPPSSWHTREAV*TRVERA
Trigger: AGCGCGCTCCACGCGCGTGCACACAGCTTCCCTGGT...GTGCCACGAGGAGGGCGGTCGGTGCTTCCCTCCTCGGGCTGTGGGCACATGGGG
70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000371717.8
ENST00000399219.7
ENST00000444897.2
CDS-3UTR GCA 90 bp CTGTGTGCACGCGCGTGGAGCGCGCTCCTTGGAGCTGACCGGGCCCTTACCTTCAGCCTGGCCGAGGCCTaGGGCAGCCCCTCACTACCC +
Preference number: 4 (lower is better)
Translates to: LCARAWSALLGADRALTFSLAEA*GSPSLP
Trigger: GGGTAGTGAGGGGCTGCCGCAGGCCTCGGCCAGGCT...GAAGGTAAGGGCCCGGTCAGCTCCAAGGAGCGCGCTCCACGCGCGTGCACACAG
70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000444897.2
CDS-3UTR CCA 90 bp CTGTGTGCACGCGCGTGGAGCGCGCTCCTTGGAGCTGACCGGGCCCTTACCTTCCGACCGCCCTCCTCGTaGCACGCTGCACTCCAGCGC +
Preference number: 4 (lower is better)
Translates to: LCARAWSALLGADRALTFRPPSS*HAALQR
Trigger: GCGCTGGAGTGCAGCGTGCCACGAGGAGGGCGGTCG...GAAGGTAAGGGCCCGGTCAGCTCCAAGGAGCGCGCTCCACGCGCGTGCACACAG
70% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000371717.8
ENST00000399219.7
ENST00000444897.2
CDS-3UTR CCA 90 bp CCATGTGCCCACAGCCCGAGGAGGGAAGCACCGACCGCCCTCCTCGTGGCACGCCTGTGTGCACGCGCGTaGAGCGCGCTCCTTGGAGCT +
Preference number: 4 (lower is better)
Translates to: PCAHSPRREAPTALLVARLCARA*SALLGA
Trigger: AGCTCCAAGGAGCGCGCTCCACGCGCGTGCACACAG...GCGTGCCACGAGGAGGGCGGTCGGTGCTTCCCTCCTCGGGCTGTGGGCACATGG
70% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000371717.8
ENST00000399219.7
ENST00000444897.2
CDS-3UTR TCA 90 bp CCATGTGCCCACAGCCCGAGGAGGGAAGCACCGACCGCCCTCCTCGTGGCACGCGCTTCACGTTGCGGATaGGCGTGCACAGCTCGTGCG +
Preference number: 4 (lower is better)
Translates to: PCAHSPRREAPTALLVARASRCG*ACTARA
Trigger: CGCACGAGCTGTGCACGCTCATCCGCAACGTGAAGC...GCGTGCCACGAGGAGGGCGGTCGGTGCTTCCCTCCTCGGGCTGTGGGCACATGG
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000371717.8
ENST00000399219.7
CDS-3UTR TCA 90 bp GCCCACAGCCCGAGGAGGGAAGCACCGACCGCCCTCCTCGTGGCACGCTGCACTTGCGGTACTCACGGATaGGCGTGCACAGCTCGTGCG +
Preference number: 4 (lower is better)
Translates to: AHSPRREAPTALLVARCTCGTHG*ACTARA
Trigger: CGCACGAGCTGTGCACGCTCATCCGTGAGTACCGCA...AGTGCAGCGTGCCACGAGGAGGGCGGTCGGTGCTTCCCTCCTCGGGCTGTGGGC
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000444897.2
CDS-3UTR TCA 90 bp CTGTGTGCACGCGCGTGGAGCGCGCTCCTTGGAGCTGACCGGGCCCTTACCTTCCCGGAAACCTGGGGCTaGGACTCCTGCCCGAGAGCC +
Preference number: 4 (lower is better)
Translates to: LCARAWSALLGADRALTFPETWG*DSCPRA
Trigger: GGCTCTCGGGCAGGAGTCTCAGCCCCAGGTTTCCGG...GAAGGTAAGGGCCCGGTCAGCTCCAAGGAGCGCGCTCCACGCGCGTGCACACAG
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000444897.2
CDS-3UTR GCA 90 bp CCCCATGTGCCCACAGCCCGAGGAGGGAAGCACCGACCGCCCTCCTCGTGGCACCGCCGGCCAGCACCATaGGGTCGGGAGTGTAGTAGT +
Preference number: 4 (lower is better)
Translates to: PHVPTARGGKHRPPSSWHRRPAP*GRECSS
Trigger: ACTACTACACTCCCGACCGCATGGTGCTGGCCGGCG...GTGCCACGAGGAGGGCGGTCGGTGCTTCCCTCCTCGGGCTGTGGGCACATGGGG
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000371717.8
ENST00000399219.7
CDS-3UTR GCA 90 bp CTGTGTGCACGCGCGTGGAGCGCGCTCCTTGGAGCTGACCGGGCCCTTACCTTCTCCACCAGATGCTCGTaGTCCACGCCCACGCCGGCC +
Preference number: 4 (lower is better)
Translates to: LCARAWSALLGADRALTFSTRCS*STPTPA
Trigger: GGCCGGCGTGGGCGTGGAGCACGAGCATCTGGTGGA...GAAGGTAAGGGCCCGGTCAGCTCCAAGGAGCGCGCTCCACGCGCGTGCACACAG
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000371717.8
ENST00000399219.7
CDS-3UTR GCA 90 bp GCCCACAGCCCGAGGAGGGAAGCACCGACCGCCCTCCTCGTGGCACGCTGCACTGCACAGTCCACCAGATaGTCGTGCTCCACGCCCACG +
Preference number: 4 (lower is better)
Translates to: AHSPRREAPTALLVARCTAQSTR*SCSTPT
Trigger: CGTGGGCGTGGAGCACGAGCATCTGGTGGACTGTGC...AGTGCAGCGTGCCACGAGGAGGGCGGTCGGTGCTTCCCTCCTCGGGCTGTGGGC
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000371717.8
ENST00000399219.7
CDS-3UTR GCA 90 bp CCATGTGCCCACAGCCCGAGGAGGGAAGCACCGACCGCCCTCCTCGTGGCACGCTGGAGAACATGCCCTTaGCGGGCCCACCAGCCGAGA +
Preference number: 4 (lower is better)
Translates to: PCAHSPRREAPTALLVARWRTCP*RAHQPR
Trigger: TCTCGGCTGGTGGGCCCGGCAAGGGCATGTTCTCCA...GCGTGCCACGAGGAGGGCGGTCGGTGCTTCCCTCCTCGGGCTGTGGGCACATGG
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000371717.8
ENST00000399219.7
ENST00000444897.2
CDS-3UTR GCA 90 bp TGCAGAGGGCAAACGCGTGTCACACGAGCGCGCCACGGCCCCCACGCTGAGGCTCTCCTCGTGGCACGCTaGACTCCAGCGCTGGGCACT +
Preference number: 4 (lower is better)
Translates to: CRGQTRVTRARHGPHAEALLVAR*TPALGT
Trigger: AGTGCCCAGCGCTGGAGTGCAGCGTGCCACGAGGAG...AGCCTCAGCGTGGGGGCCGTGGCGCGCTCGTGTGACACGCGTTTGCCCTCTGCA
69% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000444897.2
CDS-3UTR TCA 90 bp GGCAAACGCGTGTCACACGAGCGCGCCACGGCCCCCACGCTGAGGCTGCATCAGCCACGGCCCCCACGCTaGGGCTGCATCAGTAAACAC +
Preference number: 4 (lower is better)
Translates to: GKRVSHERATAPTLRLHQPRPPR*GCISKH
Trigger: GTGTTTACTGATGCAGCCTCAGCGTGGGGGCCGTGG...CTGATGCAGCCTCAGCGTGGGGGCCGTGGCGCGCTCGTGTGACACGCGTTTGCC
68% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENST00000444897.2
CDS-3UTR GCA 90 bp CTGTGTGCACGCGCGTGGAGCGCGCTCCTTGGAGCTGACCGGGCCCTTACCTTCAATATCCACGGCCTCTaGGCTCCCCCAGGCCGGCTG +
Preference number: 4 (lower is better)
Translates to: LCARAWSALLGADRALTFNIHGL*APPGRL
Trigger: CAGCCGGCCTGGGGGAGCGCAGAGGCCGTGGATATT...GAAGGTAAGGGCCCGGTCAGCTCCAAGGAGCGCGCTCCACGCGCGTGCACACAG
68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000371717.8
ENST00000399219.7
CDS-3UTR GCA 90 bp CTGTGTGCACGCGCGTGGAGCGCGCTCCTTGGAGCTGACCGGGCCCTTACCTTCCTCCTCGTGGCACGCTaGACTCCAGCGCTGGGCACT +
Preference number: 4 (lower is better)
Translates to: LCARAWSALLGADRALTFLLVAR*TPALGT
Trigger: AGTGCCCAGCGCTGGAGTGCAGCGTGCCACGAGGAG...GAAGGTAAGGGCCCGGTCAGCTCCAAGGAGCGCGCTCCACGCGCGTGCACACAG
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000371717.8
ENST00000399219.7
ENST00000444897.2
CDS-3UTR GCA 90 bp ACCACTCACTCACGCTGTGCTGCTGATGGGGGCACCTGGGCCCAAAGGCAGCCACTGCGGGGCCCCATGTaGCCACAGCCCGAGGAGGGA +
Preference number: 4 (lower is better)
Translates to: TTHSRCAADGGTWAQRQPLRGPM*PQPEEG
Trigger: TCCCTCCTCGGGCTGTGGGCACATGGGGCCCCGCAG...TGGCTGCCTTTGGGCCCAGGTGCCCCCATCAGCAGCACAGCGTGAGTGAGTGGT
68% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000444897.2
CDS-3UTR CCA 90 bp GCCCACAGCCCGAGGAGGGAAGCACCGACCGCCCTCCTCGTGGCACGCTGCACTGGTGAGAAGTGGCTCTaGGTCAGGCCGCAGGTTCAG +
Preference number: 4 (lower is better)
Translates to: AHSPRREAPTALLVARCTGEKWL*VRPQVQ
Trigger: CTGAACCTGCGGCCTGACCCAGAGCCACTTCTCACC...AGTGCAGCGTGCCACGAGGAGGGCGGTCGGTGCTTCCCTCCTCGGGCTGTGGGC
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000371717.8
ENST00000399219.7
CDS-3UTR CCA 90 bp CCATGTGCCCACAGCCCGAGGAGGGAAGCACCGACCGCCCTCCTCGTGGCACGCGGTGAGAAGTGGCTCTaGGTCAGGCCGCAGGTTCAG +
Preference number: 4 (lower is better)
Translates to: PCAHSPRREAPTALLVARGEKWL*VRPQVQ
Trigger: CTGAACCTGCGGCCTGACCCAGAGCCACTTCTCACC...GCGTGCCACGAGGAGGGCGGTCGGTGCTTCCCTCCTCGGGCTGTGGGCACATGG
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000371717.8
ENST00000399219.7
CDS-3UTR CCA 90 bp GGTGGCCTCCGGGAGGCTTTGATAGGTCAGCCTTTGCTGCCTCCCAGCTCAGGGCGACCGCCCTCCTCGTaGCACGCTGCACTCCAGCGC +
Preference number: 4 (lower is better)
Translates to: GGLREALIGQPLLPPSSGRPPSS*HAALQR
Trigger: GCGCTGGAGTGCAGCGTGCCACGAGGAGGGCGGTCG...CCCTGAGCTGGGAGGCAGCAAAGGCTGACCTATCAAAGCCTCCCGGAGGCCACC
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000371717.8
ENST00000399219.7
ENST00000444897.2
CDS-3UTR CCA 90 bp GCCCACAGCCCGAGGAGGGAAGCACCGACCGCCCTCCTCGTGGCACGCTGCACTTGGTACCCAGCACGGTaGCCTCCGGGAGGCTTTGAT +
Preference number: 4 (lower is better)
Translates to: AHSPRREAPTALLVARCTWYPAR*PPGGFD
Trigger: ATCAAAGCCTCCCGGAGGCCACCGTGCTGGGTACCA...AGTGCAGCGTGCCACGAGGAGGGCGGTCGGTGCTTCCCTCCTCGGGCTGTGGGC
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000371717.8
ENST00000399219.7
ENST00000444897.2
CDS-3UTR CCA 90 bp CCCCATGTGCCCACAGCCCGAGGAGGGAAGCACCGACCGCCCTCCTCGTGGCACTGGTACCCAGCACGGTaGCCTCCGGGAGGCTTTGAT +
Preference number: 4 (lower is better)
Translates to: PHVPTARGGKHRPPSSWHWYPAR*PPGGFD
Trigger: ATCAAAGCCTCCCGGAGGCCACCGTGCTGGGTACCA...GTGCCACGAGGAGGGCGGTCGGTGCTTCCCTCCTCGGGCTGTGGGCACATGGGG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000371717.8
ENST00000399219.7
ENST00000444897.2
CDS-3UTR CCA 90 bp GCCCACAGCCCGAGGAGGGAAGCACCGACCGCCCTCCTCGTGGCACGCTGCACTGTCAGAGGTGAGTCCTaGTACCCAGCACGGTGGCCT +
Preference number: 4 (lower is better)
Translates to: AHSPRREAPTALLVARCTVRGES*YPARWP
Trigger: AGGCCACCGTGCTGGGTACCAGGACTCACCTCTGAC...AGTGCAGCGTGCCACGAGGAGGGCGGTCGGTGCTTCCCTCCTCGGGCTGTGGGC
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000371717.8
ENST00000399219.7
ENST00000444897.2
CDS-3UTR CCA 90 bp CCCCATGTGCCCACAGCCCGAGGAGGGAAGCACCGACCGCCCTCCTCGTGGCACGTCAGAGGTGAGTCCTaGTACCCAGCACGGTGGCCT +
Preference number: 4 (lower is better)
Translates to: PHVPTARGGKHRPPSSWHVRGES*YPARWP
Trigger: AGGCCACCGTGCTGGGTACCAGGACTCACCTCTGAC...GTGCCACGAGGAGGGCGGTCGGTGCTTCCCTCCTCGGGCTGTGGGCACATGGGG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000371717.8
ENST00000399219.7
ENST00000444897.2
CDS-3UTR TCA 90 bp CCCCATGTGCCCACAGCCCGAGGAGGGAAGCACCGACCGCCCTCCTCGTGGCACGGGTCGGGCCCAGGCTaGCATTGGACATGTCTCTTT +
Preference number: 4 (lower is better)
Translates to: PHVPTARGGKHRPPSSWHGSGPG*HWTCLF
Trigger: AAAGAGACATGTCCAATGTCAGCCTGGGCCCGACCC...GTGCCACGAGGAGGGCGGTCGGTGCTTCCCTCCTCGGGCTGTGGGCACATGGGG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000371717.8
ENST00000399219.7
ENST00000444897.2
CDS-3UTR GCA 90 bp GGTGGCCTCCGGGAGGCTTTGATAGGTCAGCCTTTGCTGCCTCCCAGCTCAGGGTCCACCAGATGCTCGTaGTCCACGCCCACGCCGGCC +
Preference number: 4 (lower is better)
Translates to: GGLREALIGQPLLPPSSGSTRCS*STPTPA
Trigger: GGCCGGCGTGGGCGTGGAGCACGAGCATCTGGTGGA...CCCTGAGCTGGGAGGCAGCAAAGGCTGACCTATCAAAGCCTCCCGGAGGCCACC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000371717.8
ENST00000399219.7
CDS-3UTR GCA 90 bp GCCCACAGCCCGAGGAGGGAAGCACCGACCGCCCTCCTCGTGGCACGCTGCACTAGTCCAACCATGATGTaGGTGAGCTCGGGGATGGGG +
Preference number: 4 (lower is better)
Translates to: AHSPRREAPTALLVARCTSPTMM*VSSGMG
Trigger: CCCCATCCCCGAGCTCACGCACATCATGGTTGGACT...AGTGCAGCGTGCCACGAGGAGGGCGGTCGGTGCTTCCCTCCTCGGGCTGTGGGC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000371717.8
ENST00000399219.7
ENST00000444897.2
CDS-3UTR GCA 90 bp CTGTGTGCACGCGCGTGGAGCGCGCTCCTTGGAGCTGACCGGGCCCTTACCTTCTGGAGAACATGCCCTTaGCGGGCCCACCAGCCGAGA +
Preference number: 4 (lower is better)
Translates to: LCARAWSALLGADRALTFWRTCP*RAHQPR
Trigger: TCTCGGCTGGTGGGCCCGGCAAGGGCATGTTCTCCA...GAAGGTAAGGGCCCGGTCAGCTCCAAGGAGCGCGCTCCACGCGCGTGCACACAG
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000371717.8
ENST00000399219.7
ENST00000444897.2
CDS-3UTR TCA 90 bp AGGCCTGGAAAGGAGATGCCCACAGGTGACACCATAAGCCCGAGCCACCCCAACGGTGGGGCCGGGAAGTaGGACCAGGTCTGCGACCCC +
Preference number: 4 (lower is better)
Translates to: RPGKEMPTGDTISPSHPNGGAGK*DQVCDP
Trigger: GGGGTCGCAGACCTGGTCTCACTTCCCGGCCCCACC...GTTGGGGTGGCTCGGGCTTATGGTGTCACCTGTGGGCATCTCCTTTCCAGGCCT
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000444897.2
CDS-3UTR GCA 90 bp GGTGGCCTCCGGGAGGCTTTGATAGGTCAGCCTTTGCTGCCTCCCAGCTCAGGGCTCCTCGTGGCACGCTaGACTCCAGCGCTGGGCACT +
Preference number: 4 (lower is better)
Translates to: GGLREALIGQPLLPPSSGLLVAR*TPALGT
Trigger: AGTGCCCAGCGCTGGAGTGCAGCGTGCCACGAGGAG...CCCTGAGCTGGGAGGCAGCAAAGGCTGACCTATCAAAGCCTCCCGGAGGCCACC
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000371717.8
ENST00000399219.7
ENST00000444897.2
CDS-3UTR CCA 90 bp CCCCATGTGCCCACAGCCCGAGGAGGGAAGCACCGACCGCCCTCCTCGTGGCACGGATGTGCTCATACGTaGGCAGGTCAGTCAGGTCAC +
Preference number: 4 (lower is better)
Translates to: PHVPTARGGKHRPPSSWHGCAHT*AGQSGH
Trigger: GTGACCTGACTGACCTGCCCACGTATGAGCACATCC...GTGCCACGAGGAGGGCGGTCGGTGCTTCCCTCCTCGGGCTGTGGGCACATGGGG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000371717.8
ENST00000399219.7
ENST00000444897.2
CDS-3UTR CCA 90 bp GCCCACAGCCCGAGGAGGGAAGCACCGACCGCCCTCCTCGTGGCACGCTGCACTCTTCCTGGCTTGCGGTaGTCAGGCTCGATACTGACT +
Preference number: 4 (lower is better)
Translates to: AHSPRREAPTALLVARCTLPGLR*SGSILT
Trigger: AGTCAGTATCGAGCCTGACCACCGCAAGCCAGGAAG...AGTGCAGCGTGCCACGAGGAGGGCGGTCGGTGCTTCCCTCCTCGGGCTGTGGGC
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000371717.8
ENST00000399219.7
ENST00000444897.2
CDS-3UTR CCA 90 bp GCAGAGGGCAAACGCGTGTCACACGAGCGCGCCACGGCCCCCACGCTGAGGCTGCTTCCTGGCTTGCGGTaGTCAGGCTCGATACTGACT +
Preference number: 4 (lower is better)
Translates to: AEGKRVSHERATAPTLRLLPGLR*SGSILT
Trigger: AGTCAGTATCGAGCCTGACCACCGCAAGCCAGGAAG...CAGCCTCAGCGTGGGGGCCGTGGCGCGCTCGTGTGACACGCGTTTGCCCTCTGC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000444897.2
3UTR CAA 72 bp CAGGGAAGCTGTGTGCACGCGCGTGGAGCGCGCTCCTaGGAGCTGACCGGGCCCTTACCTTCTCCTGCTTGT +
Preference number: 4 (lower is better)
Translates to: QGSCVHARGARS*ELTGPLPSPAC
Trigger: ACAAGCAGGAGAAGGTAAGGGCCCGGTCAGCTCCAAGGAGCGCGCTCCACGCGCGTGCACACAGCTTCCCTG
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000371717.8
ENST00000399219.7
ENST00000444897.2
CDS-3UTR GCA 90 bp GGTGGCCTCCGGGAGGCTTTGATAGGTCAGCCTTTGCTGCCTCCCAGCTCAGGGCGCCGGCCAGCACCATaGGGTCGGGAGTGTAGTAGT +
Preference number: 4 (lower is better)
Translates to: GGLREALIGQPLLPPSSGRRPAP*GRECSS
Trigger: ACTACTACACTCCCGACCGCATGGTGCTGGCCGGCG...CCCTGAGCTGGGAGGCAGCAAAGGCTGACCTATCAAAGCCTCCCGGAGGCCACC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000371717.8
ENST00000399219.7
3UTR CAA 72 bp AGTCCTGGTACCCAGCACGGTGGCCTCCGGGAGGCTTaGATAGGTCAGCCTTTGCTGCCTCCCAGCTCAGGG +
Preference number: 4 (lower is better)
Translates to: SPGTQHGGLREA*IGQPLLPPSSG
Trigger: CCCTGAGCTGGGAGGCAGCAAAGGCTGACCTATCAAAGCCTCCCGGAGGCCACCGTGCTGGGTACCAGGACT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000371717.8
ENST00000399219.7
ENST00000444897.2
CDS-3UTR TCA 90 bp GCCCACAGCCCGAGGAGGGAAGCACCGACCGCCCTCCTCGTGGCACGCTGCACTGCAGCACCTCTCGGTTaGTCTTTGCTACGTTTTCTG +
Preference number: 4 (lower is better)
Translates to: AHSPRREAPTALLVARCTAAPLG*SLLRFL
Trigger: CAGAAAACGTAGCAAAGATCAACCGAGAGGTGCTGC...AGTGCAGCGTGCCACGAGGAGGGCGGTCGGTGCTTCCCTCCTCGGGCTGTGGGC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000371717.8
ENST00000399219.7
CDS-3UTR TCA 90 bp AGGCCTGGAAAGGAGATGCCCACAGGTGACACCATAAGCCCGAGCCACCCCAACCTTGGCCGCCCCTGCTaGGGACAACTGGTGAAGGCC +
Preference number: 4 (lower is better)
Translates to: RPGKEMPTGDTISPSHPNLGRPC*GQLVKA
Trigger: GGCCTTCACCAGTTGTCCTCAGCAGGGGCGGCCAAG...GTTGGGGTGGCTCGGGCTTATGGTGTCACCTGTGGGCATCTCCTTTCCAGGCCT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000444897.2
CDS-3UTR TCA 90 bp ACCACTCACTCACGCTGTGCTGCTGATGGGGGCACCTGGGCCCAAAGGCAGCCAGGAGATGCCCACAGGTaGCACCATAAGCCCGAGCCA +
Preference number: 4 (lower is better)
Translates to: TTHSRCAADGGTWAQRQPGDAHR*HHKPEP
Trigger: TGGCTCGGGCTTATGGTGTCACCTGTGGGCATCTCC...TGGCTGCCTTTGGGCCCAGGTGCCCCCATCAGCAGCACAGCGTGAGTGAGTGGT
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000444897.2
CDS-3UTR CCA 90 bp CCCCATGTGCCCACAGCCCGAGGAGGGAAGCACCGACCGCCCTCCTCGTGGCACGTGTCTCTTGATGTCTaGCAGTCACAGATACCCCCA +
Preference number: 4 (lower is better)
Translates to: PHVPTARGGKHRPPSSWHVSLDV*QSQIPP
Trigger: TGGGGGTATCTGTGACTGCCAGACATCAAGAGACAC...GTGCCACGAGGAGGGCGGTCGGTGCTTCCCTCCTCGGGCTGTGGGCACATGGGG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000371717.8
CDS-3UTR CCA 90 bp CCATGTGCCCACAGCCCGAGGAGGGAAGCACCGACCGCCCTCCTCGTGGCACGCGCGTTATACATCCAGTaGTGCCTGTTGAGCACGTTG +
Preference number: 4 (lower is better)
Translates to: PCAHSPRREAPTALLVARALYIQ*CLLSTL
Trigger: CAACGTGCTCAACAGGCACCACTGGATGTATAACGC...GCGTGCCACGAGGAGGGCGGTCGGTGCTTCCCTCCTCGGGCTGTGGGCACATGG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000371717.8
ENST00000399219.7
ENST00000444897.2
CDS-3UTR CCA 90 bp GCAGAGGGCAAACGCGTGTCACACGAGCGCGCCACGGCCCCCACGCTGAGGCTGGCGTTATACATCCAGTaGTGCCTGTTGAGCACGTTG +
Preference number: 4 (lower is better)
Translates to: AEGKRVSHERATAPTLRLALYIQ*CLLSTL
Trigger: CAACGTGCTCAACAGGCACCACTGGATGTATAACGC...CAGCCTCAGCGTGGGGGCCGTGGCGCGCTCGTGTGACACGCGTTTGCCCTCTGC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000444897.2
CDS-3UTR TCA 90 bp GGTGGCCTCCGGGAGGCTTTGATAGGTCAGCCTTTGCTGCCTCCCAGCTCAGGGGGGTCGGGCCCAGGCTaGCATTGGACATGTCTCTTT +
Preference number: 4 (lower is better)
Translates to: GGLREALIGQPLLPPSSGGSGPG*HWTCLF
Trigger: AAAGAGACATGTCCAATGTCAGCCTGGGCCCGACCC...CCCTGAGCTGGGAGGCAGCAAAGGCTGACCTATCAAAGCCTCCCGGAGGCCACC
62% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 3 transcripts:
ENST00000371717.8
ENST00000399219.7
ENST00000444897.2
CDS-3UTR GCA 90 bp GCCCACAGCCCGAGGAGGGAAGCACCGACCGCCCTCCTCGTGGCACGCTGCACTTTATACATCCAGTGGTaGCTGTTGAGCACGTTGAGG +
Preference number: 4 (lower is better)
Translates to: AHSPRREAPTALLVARCTLYIQW*LLSTLR
Trigger: CCTCAACGTGCTCAACAGGCACCACTGGATGTATAA...AGTGCAGCGTGCCACGAGGAGGGCGGTCGGTGCTTCCCTCCTCGGGCTGTGGGC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000371717.8
ENST00000399219.7
ENST00000444897.2
CDS-3UTR GCA 90 bp GCCCACAGCCCGAGGAGGGAAGCACCGACCGCCCTCCTCGTGGCACGCTGCACTCCCAGAAGAGTCCGATaGACATACAACTTGGCAGTT +
Preference number: 4 (lower is better)
Translates to: AHSPRREAPTALLVARCTPRRVR*TYNLAV
Trigger: AACTGCCAAGTTGTATGTGCATCGGACTCTTCTGGG...AGTGCAGCGTGCCACGAGGAGGGCGGTCGGTGCTTCCCTCCTCGGGCTGTGGGC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000444897.2
CDS-3UTR CCA 90 bp CCCCATGTGCCCACAGCCCGAGGAGGGAAGCACCGACCGCCCTCCTCGTGGCACCTTCATCTTGATGTCTaGCAGTCACAGATACCCCCA +
Preference number: 4 (lower is better)
Translates to: PHVPTARGGKHRPPSSWHLHLDV*QSQIPP
Trigger: TGGGGGTATCTGTGACTGCCAGACATCAAGATGAAG...GTGCCACGAGGAGGGCGGTCGGTGCTTCCCTCCTCGGGCTGTGGGCACATGGGG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000399219.7
CDS-3UTR TCA 90 bp CTGTGTGCACGCGCGTGGAGCGCGCTCCTTGGAGCTGACCGGGCCCTTACCTTCGCAGCACCTCTCGGTTaGTCTTTGCTACGTTTTCTG +
Preference number: 4 (lower is better)
Translates to: LCARAWSALLGADRALTFAAPLG*SLLRFL
Trigger: CAGAAAACGTAGCAAAGATCAACCGAGAGGTGCTGC...GAAGGTAAGGGCCCGGTCAGCTCCAAGGAGCGCGCTCCACGCGCGTGCACACAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000371717.8
ENST00000399219.7
CDS-3UTR TCA 90 bp AGGCCTGGAAAGGAGATGCCCACAGGTGACACCATAAGCCCGAGCCACCCCAACGGCTGGACACTCGCTTaGGGATTTAAGCGGGGGCTC +
Preference number: 4 (lower is better)
Translates to: RPGKEMPTGDTISPSHPNGWTLA*GFKRGL
Trigger: GAGCCCCCGCTTAAATCCTCAAGCGAGTGTCCAGCC...GTTGGGGTGGCTCGGGCTTATGGTGTCACCTGTGGGCATCTCCTTTCCAGGCCT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000444897.2
CDS-3UTR TCA 90 bp TTCACATCTTCCGGCTTCACGTTGCCTAGTGCAGAGGGCAAACGCGTGTCACACCTCACGCTGTGCTGCTaGTGGGGGCACCTGGGCCCA +
Preference number: 4 (lower is better)
Translates to: FTSSGFTLPSAEGKRVSHLTLCC*WGHLGP
Trigger: TGGGCCCAGGTGCCCCCATCAGCAGCACAGCGTGAG...GTGTGACACGCGTTTGCCCTCTGCACTAGGCAACGTGAAGCCGGAAGATGTGAA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000444897.2
CDS-3UTR GCA 90 bp TGCAGAGGGCAAACGCGTGTCACACGAGCGCGCCACGGCCCCCACGCTGAGGCTTTATACATCCAGTGGTaGCTGTTGAGCACGTTGAGG +
Preference number: 4 (lower is better)
Translates to: CRGQTRVTRARHGPHAEALYIQW*LLSTLR
Trigger: CCTCAACGTGCTCAACAGGCACCACTGGATGTATAA...AGCCTCAGCGTGGGGGCCGTGGCGCGCTCGTGTGACACGCGTTTGCCCTCTGCA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000444897.2
CDS-3UTR GCA 90 bp GGTGGCCTCCGGGAGGCTTTGATAGGTCAGCCTTTGCTGCCTCCCAGCTCAGGGCTTCCGGCTTCACGTTaGCTAGTGCAGAGGGCAAAC +
Preference number: 4 (lower is better)
Translates to: GGLREALIGQPLLPPSSGLPASR*LVQRAN
Trigger: GTTTGCCCTCTGCACTAGGCAACGTGAAGCCGGAAG...CCCTGAGCTGGGAGGCAGCAAAGGCTGACCTATCAAAGCCTCCCGGAGGCCACC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000444897.2
CDS-3UTR CCA 90 bp GGTGGCCTCCGGGAGGCTTTGATAGGTCAGCCTTTGCTGCCTCCCAGCTCAGGGCTTCCTGGCTTGCGGTaGTCAGGCTCGATACTGACT +
Preference number: 4 (lower is better)
Translates to: GGLREALIGQPLLPPSSGLPGLR*SGSILT
Trigger: AGTCAGTATCGAGCCTGACCACCGCAAGCCAGGAAG...CCCTGAGCTGGGAGGCAGCAAAGGCTGACCTATCAAAGCCTCCCGGAGGCCACC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000371717.8
ENST00000399219.7
ENST00000444897.2
CDS-3UTR GCA 90 bp ACCACTCACTCACGCTGTGCTGCTGATGGGGGCACCTGGGCCCAAAGGCAGCCAGGCATTCCGAGCCACTaGTACTCCACGTACAATGTA +
Preference number: 4 (lower is better)
Translates to: TTHSRCAADGGTWAQRQPGIPSH*YSTYNV
Trigger: TACATTGTACGTGGAGTAGCAGTGGCTCGGAATGCC...TGGCTGCCTTTGGGCCCAGGTGCCCCCATCAGCAGCACAGCGTGAGTGAGTGGT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000444897.2
CDS-3UTR CCA 90 bp AGCCTGTCCCCCAGAAGAGTCCGATGCACATACAACTTGGCAGTTTCAGGAAATCGACCGCCCTCCTCGTaGCACGCTGCACTCCAGCGC +
Preference number: 4 (lower is better)
Translates to: SLSPRRVRCTYNLAVSGNRPPSS*HAALQR
Trigger: GCGCTGGAGTGCAGCGTGCCACGAGGAGGGCGGTCG...ATTTCCTGAAACTGCCAAGTTGTATGTGCATCGGACTCTTCTGGGGGACAGGCT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000444897.2
CDS-3UTR CCA 90 bp GTACAGCGGCATTCCGAGCCACTGCTACTCCACGTACAATGTAGCAGTCCTCTACTGTGTGCACGCGCGTaGAGCGCGCTCCTTGGAGCT +
Preference number: 4 (lower is better)
Translates to: VQRHSEPLLLHVQCSSPLLCARA*SALLGA
Trigger: AGCTCCAAGGAGCGCGCTCCACGCGCGTGCACACAG...TAGAGGACTGCTACATTGTACGTGGAGTAGCAGTGGCTCGGAATGCCGCTGTAC
59% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000444897.2
CDS-3UTR CCA 90 bp ACAGGAGTGATAGGGTCCAGGTGGGTCTGTTTTCTACAGAAAACGAGGCCCGAGGCTGATGGGGGCACCTaGGCCCAAAGGCAGCCACTG +
Preference number: 4 (lower is better)
Translates to: TGVIGSRWVCFLQKTRPEADGGT*AQRQPL
Trigger: CAGTGGCTGCCTTTGGGCCCAGGTGCCCCCATCAGC...CTCGGGCCTCGTTTTCTGTAGAAAACAGACCCACCTGGACCCTATCACTCCTGT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000444897.2
CDS-3UTR CCA 90 bp TTCACATCTTCCGGCTTCACGTTGCCTAGTGCAGAGGGCAAACGCGTGTCACACCACGGAGGGGGCGGCTaGTCTGTACCACTCACTCAC +
Preference number: 4 (lower is better)
Translates to: FTSSGFTLPSAEGKRVSHHGGGG*SVPLTH
Trigger: GTGAGTGAGTGGTACAGACCAGCCGCCCCCTCCGTG...GTGTGACACGCGTTTGCCCTCTGCACTAGGCAACGTGAAGCCGGAAGATGTGAA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000444897.2
CDS-3UTR GCA 90 bp ACAGGAGTGATAGGGTCCAGGTGGGTCTGTTTTCTACAGAAAACGAGGCCCGAGTGGAGAACATGCCCTTaGCGGGCCCACCAGCCGAGA +
Preference number: 4 (lower is better)
Translates to: TGVIGSRWVCFLQKTRPEWRTCP*RAHQPR
Trigger: TCTCGGCTGGTGGGCCCGGCAAGGGCATGTTCTCCA...CTCGGGCCTCGTTTTCTGTAGAAAACAGACCCACCTGGACCCTATCACTCCTGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000444897.2
CDS-3UTR CCA 90 bp AGCCTGTCCCCCAGAAGAGTCCGATGCACATACAACTTGGCAGTTTCAGGAAATCCACGACCCTGCCCTTaGCCGCCCCTGCTGAGGACA +
Preference number: 4 (lower is better)
Translates to: SLSPRRVRCTYNLAVSGNPRPCP*PPLLRT
Trigger: TGTCCTCAGCAGGGGCGGCCAAGGGCAGGGTCGTGG...ATTTCCTGAAACTGCCAAGTTGTATGTGCATCGGACTCTTCTGGGGGACAGGCT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000444897.2
CDS-3UTR TCA 90 bp GGTGGCCTCCGGGAGGCTTTGATAGGTCAGCCTTTGCTGCCTCCCAGCTCAGGGTCGACTTCTTCATCTTaGTGTCTGGCAGTCACAGAT +
Preference number: 4 (lower is better)
Translates to: GGLREALIGQPLLPPSSGSTSSS*CLAVTD
Trigger: ATCTGTGACTGCCAGACATCAAGATGAAGAAGTCGA...CCCTGAGCTGGGAGGCAGCAAAGGCTGACCTATCAAAGCCTCCCGGAGGCCACC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000399219.7
CDS-3UTR TCA 90 bp GGTGGCCTCCGGGAGGCTTTGATAGGTCAGCCTTTGCTGCCTCCCAGCTCAGGGACAAGTGACAGACGTTaGGTTCTCAGTAAATGGGGA +
Preference number: 4 (lower is better)
Translates to: GGLREALIGQPLLPPSSGTSDRR*VLSKWG
Trigger: TCCCCATTTACTGAGAACTCAACGTCTGTCACTTGT...CCCTGAGCTGGGAGGCAGCAAAGGCTGACCTATCAAAGCCTCCCGGAGGCCACC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000444897.2
CDS-3UTR GCA 90 bp ACCCAGGAACCCCAGGACAGGAGTGATAGGGTCCAGGTGGGTCTGTTTTCTACAAGTCCAACCATGATGTaGGTGAGCTCGGGGATGGGG +
Preference number: 4 (lower is better)
Translates to: TQEPQDRSDRVQVGLFSTSPTMM*VSSGMG
Trigger: CCCCATCCCCGAGCTCACGCACATCATGGTTGGACT...TGTAGAAAACAGACCCACCTGGACCCTATCACTCCTGTCCTGGGGTTCCTGGGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000444897.2
CDS-3UTR GCA 90 bp AGGCCTGGAAAGGAGATGCCCACAGGTGACACCATAAGCCCGAGCCACCCCAACCGTAATAGGCAGCCTTaGCAGGTTTTAAGCCTGTCC +
Preference number: 4 (lower is better)
Translates to: RPGKEMPTGDTISPSHPNRNRQP*QVLSLS
Trigger: GGACAGGCTTAAAACCTGGCAAGGCTGCCTATTACG...GTTGGGGTGGCTCGGGCTTATGGTGTCACCTGTGGGCATCTCCTTTCCAGGCCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000444897.2
CDS-3UTR CCA 90 bp ACCACTCACTCACGCTGTGCTGCTGATGGGGGCACCTGGGCCCAAAGGCAGCCAGTGATAGGGTCCAGGTaGGTCTGTTTTCTACAGAAA +
Preference number: 4 (lower is better)
Translates to: TTHSRCAADGGTWAQRQPVIGSR*VCFLQK
Trigger: TTTCTGTAGAAAACAGACCCACCTGGACCCTATCAC...TGGCTGCCTTTGGGCCCAGGTGCCCCCATCAGCAGCACAGCGTGAGTGAGTGGT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000444897.2
CDS-3UTR TCA 90 bp ACAGGAGTGATAGGGTCCAGGTGGGTCTGTTTTCTACAGAAAACGAGGCCCGAGGCTGAGGACAACTGGTaGAGGCCCCAGATTCTGGGT +
Preference number: 4 (lower is better)
Translates to: TGVIGSRWVCFLQKTRPEAEDNW*RPQILG
Trigger: ACCCAGAATCTGGGGCCTTCACCAGTTGTCCTCAGC...CTCGGGCCTCGTTTTCTGTAGAAAACAGACCCACCTGGACCCTATCACTCCTGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000444897.2
CDS-3UTR CCA 90 bp AGCCTGTCCCCCAGAAGAGTCCGATGCACATACAACTTGGCAGTTTCAGGAAATGAGGCAGCAGGTGCATaGTGGGGCCGGGAAGTGAGA +
Preference number: 4 (lower is better)
Translates to: SLSPRRVRCTYNLAVSGNEAAGA*WGREVR
Trigger: TCTCACTTCCCGGCCCCACCATGCACCTGCTGCCTC...ATTTCCTGAAACTGCCAAGTTGTATGTGCATCGGACTCTTCTGGGGGACAGGCT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000444897.2
CDS-3UTR GCA 90 bp AGCCTGTCCCCCAGAAGAGTCCGATGCACATACAACTTGGCAGTTTCAGGAAATAGAAGGCCAAAGGGCTaGACCCAGGAACCCCAGGAC +
Preference number: 4 (lower is better)
Translates to: SLSPRRVRCTYNLAVSGNRRPKG*TQEPQD
Trigger: GTCCTGGGGTTCCTGGGTGCAGCCCTTTGGCCTTCT...ATTTCCTGAAACTGCCAAGTTGTATGTGCATCGGACTCTTCTGGGGGACAGGCT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000444897.2
CDS-3UTR CCA 90 bp GTACAGCGGCATTCCGAGCCACTGCTACTCCACGTACAATGTAGCAGTCCTCTAGGATGTGCTCATACGTaGGCAGGTCAGTCAGGTCAC +
Preference number: 4 (lower is better)
Translates to: VQRHSEPLLLHVQCSSPLGCAHT*AGQSGH
Trigger: GTGACCTGACTGACCTGCCCACGTATGAGCACATCC...TAGAGGACTGCTACATTGTACGTGGAGTAGCAGTGGCTCGGAATGCCGCTGTAC
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000444897.2
CDS-3UTR TCA 90 bp AGGCCTGGAAAGGAGATGCCCACAGGTGACACCATAAGCCCGAGCCACCCCAACATGGGGACATGGCAATaGCTTAAAAATATAGGACAA +
Preference number: 4 (lower is better)
Translates to: RPGKEMPTGDTISPSHPNMGTWQ*LKNIGQ
Trigger: TTGTCCTATATTTTTAAGTCATTGCCATGTCCCCAT...GTTGGGGTGGCTCGGGCTTATGGTGTCACCTGTGGGCATCTCCTTTCCAGGCCT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000444897.2
3UTR CAA 72 bp AGCCTGTCCCCCAGAAGAGTCCGATGCACATACAACTaGGCAGTTTCAGGAAATTCAGACCTCCTAAGGTCA +
Preference number: 4 (lower is better)
Translates to: SLSPRRVRCTYN*AVSGNSDLLRS
Trigger: TGACCTTAGGAGGTCTGAATTTCCTGAAACTGCCAAGTTGTATGTGCATCGGACTCTTCTGGGGGACAGGCT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000444897.2
CDS-3UTR TCA 90 bp AGCCTGTCCCCCAGAAGAGTCCGATGCACATACAACTTGGCAGTTTCAGGAAATTCTCGCCTACTAACTTaGGTGCTCTTTAACAACTCT +
Preference number: 4 (lower is better)
Translates to: SLSPRRVRCTYNLAVSGNSRLLT*VLFNNS
Trigger: AGAGTTGTTAAAGAGCACTCAAGTTAGTAGGCGAGA...ATTTCCTGAAACTGCCAAGTTGTATGTGCATCGGACTCTTCTGGGGGACAGGCT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000444897.2
CDS-3UTR CAA 90 bp CCCCATGTGCCCACAGCCCGAGGAGGGAAGCACCGACCGCCCTCCTCGTGGCACCGTGGAGCGCGCTCCTaGGAGCTGACCGGGCCCTTA +
Preference number: 5 (lower is better)
Translates to: PHVPTARGGKHRPPSSWHRGARS*ELTGPL
Trigger: TAAGGGCCCGGTCAGCTCCAAGGAGCGCGCTCCACG...GTGCCACGAGGAGGGCGGTCGGTGCTTCCCTCCTCGGGCTGTGGGCACATGGGG
71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000371717.8
ENST00000399219.7
ENST00000444897.2
CDS-3UTR CAA 90 bp CTGTGTGCACGCGCGTGGAGCGCGCTCCTTGGAGCTGACCGGGCCCTTACCTTCCTGGAGAACATGCCCTaGCCGGGCCCACCAGCCGAG +
Preference number: 5 (lower is better)
Translates to: LCARAWSALLGADRALTFLENMP*PGPPAE
Trigger: CTCGGCTGGTGGGCCCGGCAAGGGCATGTTCTCCAG...GAAGGTAAGGGCCCGGTCAGCTCCAAGGAGCGCGCTCCACGCGCGTGCACACAG
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000371717.8
ENST00000399219.7
ENST00000444897.2
CDS-3UTR CAA 90 bp ACCACTCACTCACGCTGTGCTGCTGATGGGGGCACCTGGGCCCAAAGGCAGCCACCCACGACCCTGCCCTaGGCCGCCCCTGCTGAGGAC +
Preference number: 5 (lower is better)
Translates to: TTHSRCAADGGTWAQRQPPTTLP*AAPAED
Trigger: GTCCTCAGCAGGGGCGGCCAAGGGCAGGGTCGTGGG...TGGCTGCCTTTGGGCCCAGGTGCCCCCATCAGCAGCACAGCGTGAGTGAGTGGT
69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000444897.2
CDS-3UTR CAA 90 bp CCCCATGTGCCCACAGCCCGAGGAGGGAAGCACCGACCGCCCTCCTCGTGGCACGGCCTCCGGGAGGCTTaGATAGGTCAGCCTTTGCTG +
Preference number: 5 (lower is better)
Translates to: PHVPTARGGKHRPPSSWHGLREA*IGQPLL
Trigger: CAGCAAAGGCTGACCTATCAAAGCCTCCCGGAGGCC...GTGCCACGAGGAGGGCGGTCGGTGCTTCCCTCCTCGGGCTGTGGGCACATGGGG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000371717.8
ENST00000399219.7
ENST00000444897.2
CDS-3UTR CAA 90 bp GCCCACAGCCCGAGGAGGGAAGCACCGACCGCCCTCCTCGTGGCACGCTGCACTGGCCTCCGGGAGGCTTaGATAGGTCAGCCTTTGCTG +
Preference number: 5 (lower is better)
Translates to: AHSPRREAPTALLVARCTGLREA*IGQPLL
Trigger: CAGCAAAGGCTGACCTATCAAAGCCTCCCGGAGGCC...AGTGCAGCGTGCCACGAGGAGGGCGGTCGGTGCTTCCCTCCTCGGGCTGTGGGC
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000371717.8
ENST00000399219.7
ENST00000444897.2
CDS CCA 90 bp TGTGGGGAGGGGCGACGCCTGTGCTGTCGGAACAAAGTTCCAGCGTaGGGAAAGGCAGGCCCGGTCACTTGGGTGGGAGGAGCGGTGGGT +
Preference number: 5 (lower is better)
Translates to: CGEGRRLCCRNKVPA*GKAGPVTWVGGAVG
Trigger: ACCCACCGCTCCTCCCACCCAAGTGACCGGGCCTGCCTTTCCCCACGCTGGAACTTTGTTCCGACAGCACAGGCGTCGCCCCTCCCCACA
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000610649.4
CDS-3UTR CAA 90 bp CCATGTGCCCACAGCCCGAGGAGGGAAGCACCGACCGCCCTCCTCGTGGCACGCTTGATAGGTCAGCCTTaGCTGCCTCCCAGCTCAGGG +
Preference number: 5 (lower is better)
Translates to: PCAHSPRREAPTALLVARLIGQP*LPPSSG
Trigger: CCCTGAGCTGGGAGGCAGCAAAGGCTGACCTATCAA...GCGTGCCACGAGGAGGGCGGTCGGTGCTTCCCTCCTCGGGCTGTGGGCACATGG
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000371717.8
ENST00000399219.7
ENST00000444897.2
CDS-3UTR CAA 90 bp GCAGAGGGCAAACGCGTGTCACACGAGCGCGCCACGGCCCCCACGCTGAGGCTGTTGATAGGTCAGCCTTaGCTGCCTCCCAGCTCAGGG +
Preference number: 5 (lower is better)
Translates to: AEGKRVSHERATAPTLRLLIGQP*LPPSSG
Trigger: CCCTGAGCTGGGAGGCAGCAAAGGCTGACCTATCAA...CAGCCTCAGCGTGGGGGCCGTGGCGCGCTCGTGTGACACGCGTTTGCCCTCTGC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000444897.2
CDS-3UTR CAA 90 bp GGTGGCCTCCGGGAGGCTTTGATAGGTCAGCCTTTGCTGCCTCCCAGCTCAGGGCGTGGAGCGCGCTCCTaGGAGCTGACCGGGCCCTTA +
Preference number: 5 (lower is better)
Translates to: GGLREALIGQPLLPPSSGRGARS*ELTGPL
Trigger: TAAGGGCCCGGTCAGCTCCAAGGAGCGCGCTCCACG...CCCTGAGCTGGGAGGCAGCAAAGGCTGACCTATCAAAGCCTCCCGGAGGCCACC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000371717.8
ENST00000399219.7
ENST00000444897.2
CDS CCA 90 bp TCCTGGAGGCAGCACCTCCGCACCCCTGAAACGGCGCTCGTTGTGTaGGGAGGGGCGACGCCTGTGCTGTCGGAACAAAGTTCCAGCGTG +
Preference number: 5 (lower is better)
Translates to: SWRQHLRTPETALVV*GGATPVLSEQSSSV
Trigger: CACGCTGGAACTTTGTTCCGACAGCACAGGCGTCGCCCCTCCCCACACAACGAGCGCCGTTTCAGGGGTGCGGAGGTGCTGCCTCCAGGA
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000610649.4
CDS-3UTR CAA 90 bp CCCCATGTGCCCACAGCCCGAGGAGGGAAGCACCGACCGCCCTCCTCGTGGCACGGGCCCAGGCTGACATaGGACATGTCTCTTTCTAGC +
Preference number: 5 (lower is better)
Translates to: PHVPTARGGKHRPPSSWHGPRLT*DMSLSS
Trigger: GCTAGAAAGAGACATGTCCAATGTCAGCCTGGGCCC...GTGCCACGAGGAGGGCGGTCGGTGCTTCCCTCCTCGGGCTGTGGGCACATGGGG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000371717.8
ENST00000399219.7
ENST00000444897.2
CDS-3UTR CAA 90 bp CCATGTGCCCACAGCCCGAGGAGGGAAGCACCGACCGCCCTCCTCGTGGCACGCGGGCCCAGGCTGACATaGGACATGTCTCTTTCTAGC +
Preference number: 5 (lower is better)
Translates to: PCAHSPRREAPTALLVARGPRLT*DMSLSS
Trigger: GCTAGAAAGAGACATGTCCAATGTCAGCCTGGGCCC...GCGTGCCACGAGGAGGGCGGTCGGTGCTTCCCTCCTCGGGCTGTGGGCACATGG
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000371717.8
ENST00000399219.7
ENST00000444897.2
CDS-3UTR CAA 90 bp CTGTGTGCACGCGCGTGGAGCGCGCTCCTTGGAGCTGACCGGGCCCTTACCTTCTCTTCCGGCTTCACGTaGCGGATGAGCGTGCACAGC +
Preference number: 5 (lower is better)
Translates to: LCARAWSALLGADRALTFSSGFT*RMSVHS
Trigger: GCTGTGCACGCTCATCCGCAACGTGAAGCCGGAAGA...GAAGGTAAGGGCCCGGTCAGCTCCAAGGAGCGCGCTCCACGCGCGTGCACACAG
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000371717.8
ENST00000399219.7
CDS-3UTR CAA 90 bp CTGTGTGCACGCGCGTGGAGCGCGCTCCTTGGAGCTGACCGGGCCCTTACCTTCTTGATAGGTCAGCCTTaGCTGCCTCCCAGCTCAGGG +
Preference number: 5 (lower is better)
Translates to: LCARAWSALLGADRALTFLIGQP*LPPSSG
Trigger: CCCTGAGCTGGGAGGCAGCAAAGGCTGACCTATCAA...GAAGGTAAGGGCCCGGTCAGCTCCAAGGAGCGCGCTCCACGCGCGTGCACACAG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000371717.8
ENST00000399219.7
ENST00000444897.2
CDS-3UTR CAA 90 bp CCCCATGTGCCCACAGCCCGAGGAGGGAAGCACCGACCGCCCTCCTCGTGGCACGGTGCTGTGGCGACATaGTTTGCACCGTTTATACAA +
Preference number: 5 (lower is better)
Translates to: PHVPTARGGKHRPPSSWHGAVAT*FAPFIQ
Trigger: TTGTATAAACGGTGCAAACAATGTCGCCACAGCACC...GTGCCACGAGGAGGGCGGTCGGTGCTTCCCTCCTCGGGCTGTGGGCACATGGGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000371717.8
ENST00000399219.7
ENST00000444897.2
CDS-3UTR CAA 90 bp GGTGGCCTCCGGGAGGCTTTGATAGGTCAGCCTTTGCTGCCTCCCAGCTCAGGGGGGCCCAGGCTGACATaGGACATGTCTCTTTCTAGC +
Preference number: 5 (lower is better)
Translates to: GGLREALIGQPLLPPSSGGPRLT*DMSLSS
Trigger: GCTAGAAAGAGACATGTCCAATGTCAGCCTGGGCCC...CCCTGAGCTGGGAGGCAGCAAAGGCTGACCTATCAAAGCCTCCCGGAGGCCACC
61% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 3 transcripts:
ENST00000371717.8
ENST00000399219.7
ENST00000444897.2
CDS-3UTR CAA 90 bp GGCAAACGCGTGTCACACGAGCGCGCCACGGCCCCCACGCTGAGGCTGCATCAGGGTGCTGTGGCGACATaGTTTGCACCGTTTATACAA +
Preference number: 5 (lower is better)
Translates to: GKRVSHERATAPTLRLHQGAVAT*FAPFIQ
Trigger: TTGTATAAACGGTGCAAACAATGTCGCCACAGCACC...CTGATGCAGCCTCAGCGTGGGGGCCGTGGCGCGCTCGTGTGACACGCGTTTGCC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000444897.2
CDS-3UTR CAA 90 bp CCCCATGTGCCCACAGCCCGAGGAGGGAAGCACCGACCGCCCTCCTCGTGGCACCCACTGATCGGCACATaGAGTTCCAAAAGAATGCAA +
Preference number: 5 (lower is better)
Translates to: PHVPTARGGKHRPPSSWHPLIGT*SSKRMQ
Trigger: TTGCATTCTTTTGGAACTCAATGTGCCGATCAGTGG...GTGCCACGAGGAGGGCGGTCGGTGCTTCCCTCCTCGGGCTGTGGGCACATGGGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000371717.8
ENST00000399219.7
ENST00000444897.2
CDS CCA 90 bp ACTCCTACAACGTGGCTGTCTCCTGTCAGACACCACAGGTACGCCTaGAAATGGCGCCACACTGCACTTACCGTGTCCACGGTTCCGCCC +
Preference number: 5 (lower is better)
Translates to: TPTTWLSPVRHHRYA*KWRHTALTVSTVPP
Trigger: GGGCGGAACCGTGGACACGGTAAGTGCAGTGTGGCGCCATTTCCAGGCGTACCTGTGGTGTCTGACAGGAGACAGCCACGTTGTAGGAGT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000462616.1
CDS CCA 90 bp CAGCGTGGGGAAAGGCAGGCCCGGTCACTTGGGTGGGAGGAGCGGTaGGTACGGAAAGGGTTCTTAAACGTCAGAGATCAACGGACAGAC +
Preference number: 5 (lower is better)
Translates to: QRGERQARSLGWEER*VRKGFLNVRDQRTD
Trigger: GTCTGTCCGTTGATCTCTGACGTTTAAGAACCCTTTCCGTACCCACCGCTCCTCCCACCCAAGTGACCGGGCCTGCCTTTCCCCACGCTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000610649.4
CDS-3UTR CAA 90 bp GTACAGCGGCATTCCGAGCCACTGCTACTCCACGTACAATGTAGCAGTCCTCTACTGGAGAACATGCCCTaGCCGGGCCCACCAGCCGAG +
Preference number: 5 (lower is better)
Translates to: VQRHSEPLLLHVQCSSPLLENMP*PGPPAE
Trigger: CTCGGCTGGTGGGCCCGGCAAGGGCATGTTCTCCAG...TAGAGGACTGCTACATTGTACGTGGAGTAGCAGTGGCTCGGAATGCCGCTGTAC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000444897.2
CDS-3UTR CAA 90 bp TGCAGAGGGCAAACGCGTGTCACACGAGCGCGCCACGGCCCCCACGCTGAGGCTCCACTGATCGGCACATaGAGTTCCAAAAGAATGCAA +
Preference number: 5 (lower is better)
Translates to: CRGQTRVTRARHGPHAEAPLIGT*SSKRMQ
Trigger: TTGCATTCTTTTGGAACTCAATGTGCCGATCAGTGG...AGCCTCAGCGTGGGGGCCGTGGCGCGCTCGTGTGACACGCGTTTGCCCTCTGCA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000444897.2
CDS GCA 90 bp TGCACAGGCAGAGATGAGGAACACAGCAGTGACCCACAGCTTGTGTaGTGGCCTGAGTGTCGCCTGTTGGTGGCTGTTGGCAGTCACCTC +
Preference number: 5 (lower is better)
Translates to: CTGRDEEHSSDPQLV*WPECRLLVAVGSHL
Trigger: GAGGTGACTGCCAACAGCCACCAACAGGCGACACTCAGGCCAGCACACAAGCTGTGGGTCACTGCTGTGTTCCTCATCTCTGCCTGTGCA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000462616.1
CDS CCA 90 bp ACAGGCAGAGATGAGGAACACAGCAGTGACCCACAGCTTGTGTGCTaGCCTGAGTGTCGCCTGTTGGTGGCTGTTGGCAGTCACCTCTGC +
Preference number: 5 (lower is better)
Translates to: TGRDEEHSSDPQLVC*PECRLLVAVGSHLC
Trigger: GCAGAGGTGACTGCCAACAGCCACCAACAGGCGACACTCAGGCCAGCACACAAGCTGTGGGTCACTGCTGTGTTCCTCATCTCTGCCTGT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000462616.1
CDS CCA 90 bp TGTCGGAACAAAGTTCCAGCGTGGGGAAAGGCAGGCCCGGTCACTTaGGTGGGAGGAGCGGTGGGTACGGAAAGGGTTCTTAAACGTCAG +
Preference number: 5 (lower is better)
Translates to: CRNKVPAWGKAGPVT*VGGAVGTERVLKRQ
Trigger: CTGACGTTTAAGAACCCTTTCCGTACCCACCGCTCCTCCCACCCAAGTGACCGGGCCTGCCTTTCCCCACGCTGGAACTTTGTTCCGACA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000610649.4
CDS CCA 90 bp GCGACTGCCGATATTTTGTTTACGCTCCAGCCTGTATCCATCTCCTaGAGGCAGCACCTCCGCACCCCTGAAACGGCGCTCGTTGTGTGG +
Preference number: 5 (lower is better)
Translates to: ATADILFTLQPVSIS*RQHLRTPETALVVW
Trigger: CCACACAACGAGCGCCGTTTCAGGGGTGCGGAGGTGCTGCCTCCAGGAGATGGATACAGGCTGGAGCGTAAACAAAATATCGGCAGTCGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000610649.4
CDS-3UTR CAA 90 bp GGTGGCCTCCGGGAGGCTTTGATAGGTCAGCCTTTGCTGCCTCCCAGCTCAGGGCTCGACTTCTTCATCTaGATGTCTGGCAGTCACAGA +
Preference number: 5 (lower is better)
Translates to: GGLREALIGQPLLPPSSGLDFFI*MSGSHR
Trigger: TCTGTGACTGCCAGACATCAAGATGAAGAAGTCGAG...CCCTGAGCTGGGAGGCAGCAAAGGCTGACCTATCAAAGCCTCCCGGAGGCCACC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000399219.7
CDS-3UTR CAA 90 bp CTGTGTGCACGCGCGTGGAGCGCGCTCCTTGGAGCTGACCGGGCCCTTACCTTCAGCAGAATTTCATCTTaGCTGTCAAATCGAGCAGTA +
Preference number: 5 (lower is better)
Translates to: LCARAWSALLGADRALTFSRISS*LSNRAV
Trigger: TACTGCTCGATTTGACAGCAAAGATGAAATTCTGCT...GAAGGTAAGGGCCCGGTCAGCTCCAAGGAGCGCGCTCCACGCGCGTGCACACAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000371717.8
ENST00000399219.7
CDS-3UTR CAA 90 bp GGTGGCCTCCGGGAGGCTTTGATAGGTCAGCCTTTGCTGCCTCCCAGCTCAGGGAGCAGAATTTCATCTTaGCTGTCAAATCGAGCAGTA +
Preference number: 5 (lower is better)
Translates to: GGLREALIGQPLLPPSSGSRISS*LSNRAV
Trigger: TACTGCTCGATTTGACAGCAAAGATGAAATTCTGCT...CCCTGAGCTGGGAGGCAGCAAAGGCTGACCTATCAAAGCCTCCCGGAGGCCACC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000371717.8
ENST00000399219.7
CDS-3UTR CAA 90 bp ACAGGAGTGATAGGGTCCAGGTGGGTCTGTTTTCTACAGAAAACGAGGCCCGAGTCTTCCGGCTTCACGTaGCCTAGTGCAGAGGGCAAA +
Preference number: 5 (lower is better)
Translates to: TGVIGSRWVCFLQKTRPESSGFT*PSAEGK
Trigger: TTTGCCCTCTGCACTAGGCAACGTGAAGCCGGAAGA...CTCGGGCCTCGTTTTCTGTAGAAAACAGACCCACCTGGACCCTATCACTCCTGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000444897.2
CDS TCA 90 bp ACCAGCGCCCATCTGCAGCCAGCCCTGGGAAAATCCGACGCAAGCTaGTATTTTACTTGCACTCTGGCAATAGCAGCTGCGTGCGTATTT +
Preference number: 5 (lower is better)
Translates to: TSAHLQPALGKSDAS*YFTCTLAIAAACVF
Trigger: AAATACGCACGCAGCTGCTATTGCCAGAGTGCAAGTAAAATATCAGCTTGCGTCGGATTTTCCCAGGGCTGGCTGCAGATGGGCGCTGGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000462616.1
ENST00000612553.4
CDS CCA 90 bp CAAAAACTCCTGCAGCGTTTCGCCAGCAAAGCTGAGAGAGTCACATaGTCAGTCCCACGACTCACCCAGTGGCTCAGAGAAAGAAGTAGT +
Preference number: 5 (lower is better)
Translates to: QKLLQRFASKAERVT*SVPRLTQWLRERSS
Trigger: ACTACTTCTTTCTCTGAGCCACTGGGTGAGTCGTGGGACTGACCATGTGACTCTCTCAGCTTTGCTGGCGAAACGCTGCAGGAGTTTTTG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000462616.1
CDS-3UTR CAA 90 bp ACAGGAGTGATAGGGTCCAGGTGGGTCTGTTTTCTACAGAAAACGAGGCCCGAGCGATGCACATACAACTaGGCAGTTTCAGGAAATTCA +
Preference number: 5 (lower is better)
Translates to: TGVIGSRWVCFLQKTRPERCTYN*AVSGNS
Trigger: TGAATTTCCTGAAACTGCCAAGTTGTATGTGCATCG...CTCGGGCCTCGTTTTCTGTAGAAAACAGACCCACCTGGACCCTATCACTCCTGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000444897.2
CDS TCA 90 bp GCAGGAGGTCCAAACCAGTCTAGTCTTTCCTGCTATTTTCTATCATaGAAGGCTGCTTGTTTACTCCAAAGCATTTACGCGACTGCCGAT +
Preference number: 5 (lower is better)
Translates to: AGGPNQSSLSCYFLS*KAACLLQSIYATAD
Trigger: ATCGGCAGTCGCGTAAATGCTTTGGAGTAAACAAGCAGCCTTTCATGATAGAAAATAGCAGGAAAGACTAGACTGGTTTGGACCTCCTGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000610649.4
CDS GCA 90 bp TCTATCATGAAAGGCTGCTTGTTTACTCCAAAGCATTTACGCGACTaGCGATATTTTGTTTACGCTCCAGCCTGTATCCATCTCCTGGAG +
Preference number: 5 (lower is better)
Translates to: SIMKGCLFTPKHLRD*RYFVYAPACIHLLE
Trigger: CTCCAGGAGATGGATACAGGCTGGAGCGTAAACAAAATATCGGCAGTCGCGTAAATGCTTTGGAGTAAACAAGCAGCCTTTCATGATAGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000610649.4
CDS CCA 72 bp GTGGGGTCACCTGCCAAGGAGGCAGCAGGTGCATGGTaGGGCCGGGAAGTGAGACCAGGTCTGCGACCCCAC +
Preference number: 6 (lower is better)
Translates to: VGSPAKEAAGAW*GREVRPGLRPH
Trigger: GTGGGGTCGCAGACCTGGTCTCACTTCCCGGCCCCACCATGCACCTGCTGCCTCCTTGGCAGGTGACCCCAC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000444897.2
CDS GCA 72 bp CCGGGAAGTGAGACCAGGTCTGCGACCCCACGACCCTaGCCTTGGCCGCCCCTGCTGAGGACAACTGGTGAA +
Preference number: 6 (lower is better)
Translates to: PGSETRSATPRP*PWPPLLRTTGE
Trigger: TTCACCAGTTGTCCTCAGCAGGGGCGGCCAAGGGCAGGGTCGTGGGGTCGCAGACCTGGTCTCACTTCCCGG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000444897.2
CDS CCA 72 bp GGGCGACGCCTGTGCTGTCGGAACAAAGTTCCAGCGTaGGGAAAGGCAGGCCCGGTCACTTGGGTGGGAGGA +
Preference number: 6 (lower is better)
Translates to: GRRLCCRNKVPA*GKAGPVTWVGG
Trigger: TCCTCCCACCCAAGTGACCGGGCCTGCCTTTCCCCACGCTGGAACTTTGTTCCGACAGCACAGGCGTCGCCC
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000610649.4
CDS CCA 72 bp CAGCACCTCCGCACCCCTGAAACGGCGCTCGTTGTGTaGGGAGGGGCGACGCCTGTGCTGTCGGAACAAAGT +
Preference number: 6 (lower is better)
Translates to: QHLRTPETALVV*GGATPVLSEQS
Trigger: ACTTTGTTCCGACAGCACAGGCGTCGCCCCTCCCCACACAACGAGCGCCGTTTCAGGGGTGCGGAGGTGCTG
65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000610649.4
CDS TCA 72 bp ACCCTGCCCTTGGCCGCCCCTGCTGAGGACAACTGGTaGAGGCCCCAGATTCTGGGTGTGATGGACATACCA +
Preference number: 6 (lower is better)
Translates to: TLPLAAPAEDNW*RPQILGVMDIP
Trigger: TGGTATGTCCATCACACCCAGAATCTGGGGCCTTCACCAGTTGTCCTCAGCAGGGGCGGCCAAGGGCAGGGT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000444897.2
CDS CCA 72 bp AAAGTTCCAGCGTGGGGAAAGGCAGGCCCGGTCACTTaGGTGGGAGGAGCGGTGGGTACGGAAAGGGTTCTT +
Preference number: 6 (lower is better)
Translates to: KVPAWGKAGPVT*VGGAVGTERVL
Trigger: AAGAACCCTTTCCGTACCCACCGCTCCTCCCACCCAAGTGACCGGGCCTGCCTTTCCCCACGCTGGAACTTT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000610649.4
CDS CCA 72 bp CTGTCTCCTGTCAGACACCACAGGTACGCCTGGAAATaGCGCCACACTGCACTTACCGTGTCCACGGTTCCG +
Preference number: 6 (lower is better)
Translates to: LSPVRHHRYAWK*RHTALTVSTVP
Trigger: CGGAACCGTGGACACGGTAAGTGCAGTGTGGCGCCATTTCCAGGCGTACCTGTGGTGTCTGACAGGAGACAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000462616.1
CDS CCA 72 bp ACGTGGCTGTCTCCTGTCAGACACCACAGGTACGCCTaGAAATGGCGCCACACTGCACTTACCGTGTCCACG +
Preference number: 6 (lower is better)
Translates to: TWLSPVRHHRYA*KWRHTALTVST
Trigger: CGTGGACACGGTAAGTGCAGTGTGGCGCCATTTCCAGGCGTACCTGTGGTGTCTGACAGGAGACAGCCACGT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000462616.1
CDS CAA 72 bp CAGGCAGAGATGAGGAACACAGCAGTGACCCACAGCTaGTGTGCTGGCCTGAGTGTCGCCTGTTGGTGGCTG +
Preference number: 6 (lower is better)
Translates to: QAEMRNTAVTHS*CAGLSVACWWL
Trigger: CAGCCACCAACAGGCGACACTCAGGCCAGCACACAAGCTGTGGGTCACTGCTGTGTTCCTCATCTCTGCCTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000462616.1
CDS CAA 90 bp GAGTCTGCACAGGCAGAGATGAGGAACACAGCAGTGACCCACAGCTaGTGTGCTGGCCTGAGTGTCGCCTGTTGGTGGCTGTTGGCAGTC +
Preference number: 6 (lower is better)
Translates to: ESAQAEMRNTAVTHS*CAGLSVACWWLLAV
Trigger: GACTGCCAACAGCCACCAACAGGCGACACTCAGGCCAGCACACAAGCTGTGGGTCACTGCTGTGTTCCTCATCTCTGCCTGTGCAGACTC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000462616.1
CDS GCA 72 bp AGAGATGAGGAACACAGCAGTGACCCACAGCTTGTGTaGTGGCCTGAGTGTCGCCTGTTGGTGGCTGTTGGC +
Preference number: 6 (lower is better)
Translates to: RDEEHSSDPQLV*WPECRLLVAVG
Trigger: GCCAACAGCCACCAACAGGCGACACTCAGGCCAGCACACAAGCTGTGGGTCACTGCTGTGTTCCTCATCTCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000462616.1
CDS CCA 72 bp GATGAGGAACACAGCAGTGACCCACAGCTTGTGTGCTaGCCTGAGTGTCGCCTGTTGGTGGCTGTTGGCAGT +
Preference number: 6 (lower is better)
Translates to: DEEHSSDPQLVC*PECRLLVAVGS
Trigger: ACTGCCAACAGCCACCAACAGGCGACACTCAGGCCAGCACACAAGCTGTGGGTCACTGCTGTGTTCCTCATC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000462616.1
CDS CCA 72 bp CTGCAGCGTTTCGCCAGCAAAGCTGAGAGAGTCACATaGTCAGTCCCACGACTCACCCAGTGGCTCAGAGAA +
Preference number: 6 (lower is better)
Translates to: LQRFASKAERVT*SVPRLTQWLRE
Trigger: TTCTCTGAGCCACTGGGTGAGTCGTGGGACTGACCATGTGACTCTCTCAGCTTTGCTGGCGAAACGCTGCAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000462616.1
CDS CCA 72 bp GATATTTTGTTTACGCTCCAGCCTGTATCCATCTCCTaGAGGCAGCACCTCCGCACCCCTGAAACGGCGCTC +
Preference number: 6 (lower is better)
Translates to: DILFTLQPVSIS*RQHLRTPETAL
Trigger: GAGCGCCGTTTCAGGGGTGCGGAGGTGCTGCCTCCAGGAGATGGATACAGGCTGGAGCGTAAACAAAATATC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000610649.4
CDS TCA 72 bp CATCTGCAGCCAGCCCTGGGAAAATCCGACGCAAGCTaGTATTTTACTTGCACTCTGGCAATAGCAGCTGCG +
Preference number: 6 (lower is better)
Translates to: HLQPALGKSDAS*YFTCTLAIAAA
Trigger: CGCAGCTGCTATTGCCAGAGTGCAAGTAAAATATCAGCTTGCGTCGGATTTTCCCAGGGCTGGCTGCAGATG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000462616.1
ENST00000612553.4
CDS CAA 90 bp AAGGCTGCTTGTTTACTCCAAAGCATTTACGCGACTGCCGATATTTaGTTTACGCTCCAGCCTGTATCCATCTCCTGGAGGCAGCACCTC +
Preference number: 6 (lower is better)
Translates to: KAACLLQSIYATADI*FTLQPVSISWRQHL
Trigger: GAGGTGCTGCCTCCAGGAGATGGATACAGGCTGGAGCGTAAACAAAATATCGGCAGTCGCGTAAATGCTTTGGAGTAAACAAGCAGCCTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000610649.4
CDS CAA 72 bp AGGACCACTGTTCGAGATGCGGGGGCATTCTCGAGTTaGACATTTTACTTCATGAATCATCTCGGTGAGAAG +
Preference number: 6 (lower is better)
Translates to: RTTVRDAGAFSS*TFYFMNHLGEK
Trigger: CTTCTCACCGAGATGATTCATGAAGTAAAATGTCAAACTCGAGAATGCCCCCGCATCTCGAACAGTGGTCCT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000371720.5
ENST00000462616.1
ENST00000612553.4
ENST00000622209.4
CDS CAA 72 bp AGCCCTGGGAAAATCCGACGCAAGCTGATATTTTACTaGCACTCTGGCAATAGCAGCTGCGTGCGTATTTAT +
Preference number: 6 (lower is better)
Translates to: SPGKIRRKLIFY*HSGNSSCVRIY
Trigger: ATAAATACGCACGCAGCTGCTATTGCCAGAGTGCAAGTAAAATATCAGCTTGCGTCGGATTTTCCCAGGGCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000462616.1
ENST00000612553.4
CDS CAA 72 bp TGTTTACTCCAAAGCATTTACGCGACTGCCGATATTTaGTTTACGCTCCAGCCTGTATCCATCTCCTGGAGG +
Preference number: 6 (lower is better)
Translates to: CLLQSIYATADI*FTLQPVSISWR
Trigger: CCTCCAGGAGATGGATACAGGCTGGAGCGTAAACAAAATATCGGCAGTCGCGTAAATGCTTTGGAGTAAACA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000610649.4
CDS GCA 72 bp AAAGGCTGCTTGTTTACTCCAAAGCATTTACGCGACTaGCGATATTTTGTTTACGCTCCAGCCTGTATCCAT +
Preference number: 6 (lower is better)
Translates to: KGCLFTPKHLRD*RYFVYAPACIH
Trigger: ATGGATACAGGCTGGAGCGTAAACAAAATATCGGCAGTCGCGTAAATGCTTTGGAGTAAACAAGCAGCCTTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000610649.4
CDS TCA 72 bp CCAAACCAGTCTAGTCTTTCCTGCTATTTTCTATCATaGAAGGCTGCTTGTTTACTCCAAAGCATTTACGCG +
Preference number: 6 (lower is better)
Translates to: PNQSSLSCYFLS*KAACLLQSIYA
Trigger: CGCGTAAATGCTTTGGAGTAAACAAGCAGCCTTTCATGATAGAAAATAGCAGGAAAGACTAGACTGGTTTGG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000610649.4
CDS TCA 72 bp GATGGTTTCACAGGTATATGTGTAGCTCAACATTTATaGAATCGTACACTTTGTTTCCACTCAGGGTACAAT +
Preference number: 6 (lower is better)
Translates to: DGFTGICVAQHL*NRTLCFHSGYN
Trigger: ATTGTACCCTGAGTGGAAACAAAGTGTACGATTTCATAAATGTTGAGCTACACATATACCTGTGAAACCATC
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000620412.4
CDS GCA 72 bp ATAGCAGCTGCGTGCGTATTTATAAAGAGTAAAATCTaGCTCTCCAGAATACAAATTCACAAAAAGCCTAAG +
Preference number: 6 (lower is better)
Translates to: IAAACVFIKSKI*LSRIQIHKKPK
Trigger: CTTAGGCTTTTTGTGAATTTGTATTCTGGAGAGGCAGATTTTACTCTTTATAAATACGCACGCAGCTGCTAT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000462616.1
ENST00000612553.4
ENST00000622209.4