RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for PLEKHF2 (Homo sapiens)

Ensembl gene IDs: ENSG00000175895

Ensembl transcript IDs: ENST00000315367.4, ENST00000519516.1

Found 69 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp AATTTATCTGATATATTTGCAAAAGCCTATCCCTGTAGAAGAGTGTaGGGAGTGGGAGAAGGCAGGGGGACCTACTTTCTATGGAATATA +
Preference number: 1 (lower is better)
Translates to: NLSDIFAKAYPCRRV*GVGEGRGTYFLWNI
Trigger: TATATTCCATAGAAAGTAGGTCCCCCTGCCTTCTCCCACTCCTCACACTCTTCTACAGGGATAGGCTTTTGCAAATATATCAGATAAATT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000315367.4
3UTR-3UTR TCA 90 bp GTTTCTCAGGCAAATTCATGGCTAGAACAAAACAGAGAGAGAGCTCAGAATCTTTCAGATAGCCACACCTaGTTAAATACTCCCAAATGT +
Preference number: 2 (lower is better)
Translates to: VSQANSWLEQNRERAQNLSDSHT*LNTPKC
Trigger: ACATTTGGGAGTATTTAATCAGGTGTGGCTATCTGA...AAGATTCTGAGCTCTCTCTCTGTTTTGTTCTAGCCATGAATTTGCCTGAGAAAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000315367.4
ENST00000519516.1
3UTR-3UTR TCA 90 bp TCTCAGGCAAATTCATGGCTAGAACAAAACAGAGAGAGAGCTCAGAATCTTACATCAGATAGCCACACCTaGTTAAATACTCCCAAATGT +
Preference number: 2 (lower is better)
Translates to: SQANSWLEQNRERAQNLTSDSHT*LNTPKC
Trigger: ACATTTGGGAGTATTTAATCAGGTGTGGCTATCTGA...TGTAAGATTCTGAGCTCTCTCTCTGTTTTGTTCTAGCCATGAATTTGCCTGAGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000315367.4
ENST00000519516.1
3UTR CAA 90 bp TCAATAAAGGTTGACAATGTAAATGTTATCTCACAACATTTCCCCTaGGTTCCTGAATTTGCTAGATTCCTATGTACCAGCAAATCTCCA +
Preference number: 2 (lower is better)
Translates to: SIKVDNVNVISQHFP*VPEFARFLCTSKSP
Trigger: TGGAGATTTGCTGGTACATAGGAATCTAGCAAATTCAGGAACCAAGGGGAAATGTTGTGAGATAACATTTACATTGTCAACCTTTATTGA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000315367.4
CDS-3UTR TCA 90 bp ATGGCTAGAACAAAACAGAGAGAGAGCTCAGAATCTTACATTTCCCCCAAAGTTGCAGCCGCTCGCAGGTaGCTCCCCCGCCCCTCCAGT +
Preference number: 4 (lower is better)
Translates to: MARTKQRESSESYISPKVAAARR*LPRPSS
Trigger: ACTGGAGGGGCGGGGGAGTCACCTGCGAGCGGCTGC...AACTTTGGGGGAAATGTAAGATTCTGAGCTCTCTCTCTGTTTTGTTCTAGCCAT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 1 transcripts:
ENST00000315367.4
CDS-3UTR CCA 90 bp TCATGGCTAGAACAAAACAGAGAGAGAGCTCAGAATCTTACATTTCCCCCAAAGAAGGTCCGATCCTCCTaGTCGCGGACGCAGGGCGCG +
Preference number: 4 (lower is better)
Translates to: SWLEQNRERAQNLTFPPKKVRSS*SRTQGA
Trigger: CGCGCCCTGCGTCCGCGACCAGGAGGATCGGACCTT...CTTTGGGGGAAATGTAAGATTCTGAGCTCTCTCTCTGTTTTGTTCTAGCCATGA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000315367.4
CDS-3UTR GCA 90 bp GCTAGAACAAAACAGAGAGAGAGCTCAGAATCTTACATTTCCCCCAAAGTTGATGCCTTCCAGGGTGTGTaGTGTCCGCAGCCCCGCGCA +
Preference number: 4 (lower is better)
Translates to: ARTKQRESSESYISPKVDAFQGV*CPQPRA
Trigger: TGCGCGGGGCTGCGGACAGCACACACCCTGGAAGGC...ATCAACTTTGGGGGAAATGTAAGATTCTGAGCTCTCTCTCTGTTTTGTTCTAGC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000315367.4
CDS-3UTR CCA 90 bp ATGGCTAGAACAAAACAGAGAGAGAGCTCAGAATCTTACATTTCCCCCAAAGTTTCACAGACCCCAACATaGCGTCGGCCGCCACCGCCC +
Preference number: 4 (lower is better)
Translates to: MARTKQRESSESYISPKVSQTPT*RRPPPP
Trigger: GGGCGGTGGCGGCCGACGCCATGTTGGGGTCTGTGA...AACTTTGGGGGAAATGTAAGATTCTGAGCTCTCTCTCTGTTTTGTTCTAGCCAT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000519516.1
CDS-3UTR CCA 90 bp TCATGGCTAGAACAAAACAGAGAGAGAGCTCAGAATCTTACATTTCCCCCAAAGTCTGATCTAGCAGGCTaGCATGTGGCCATGTCCCCA +
Preference number: 4 (lower is better)
Translates to: SWLEQNRERAQNLTFPPKSDLAG*HVAMSP
Trigger: TGGGGACATGGCCACATGCCAGCCTGCTAGATCAGA...CTTTGGGGGAAATGTAAGATTCTGAGCTCTCTCTCTGTTTTGTTCTAGCCATGA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000315367.4
ENST00000519516.1
CDS-3UTR CCA 90 bp ATGGCTAGAACAAAACAGAGAGAGAGCTCAGAATCTTACATTTCCCCCAAAGTTTCTGATCTAGCAGGCTaGCATGTGGCCATGTCCCCA +
Preference number: 4 (lower is better)
Translates to: MARTKQRESSESYISPKVSDLAG*HVAMSP
Trigger: TGGGGACATGGCCACATGCCAGCCTGCTAGATCAGA...AACTTTGGGGGAAATGTAAGATTCTGAGCTCTCTCTCTGTTTTGTTCTAGCCAT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000315367.4
ENST00000519516.1
CDS-3UTR TCA 90 bp GTTTCTCAGGCAAATTCATGGCTAGAACAAAACAGAGAGAGAGCTCAGAATCTTCTGGCTGTAAGAGTCTaGTCTAGCAGGCTGGCATGT +
Preference number: 4 (lower is better)
Translates to: VSQANSWLEQNRERAQNLLAVRV*SSRLAC
Trigger: ACATGCCAGCCTGCTAGATCAGACTCTTACAGCCAG...AAGATTCTGAGCTCTCTCTCTGTTTTGTTCTAGCCATGAATTTGCCTGAGAAAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000315367.4
ENST00000519516.1
CDS-3UTR CCA 90 bp TTCATGGCTAGAACAAAACAGAGAGAGAGCTCAGAATCTTACATTTCCCCCAAACATTTGCGGCAATGGTaGCGACGATTAACAGGTGTG +
Preference number: 4 (lower is better)
Translates to: FMARTKQRESSESYISPKHLRQW*RRLTGV
Trigger: CACACCTGTTAATCGTCGCCACCATTGCCGCAAATG...TTTGGGGGAAATGTAAGATTCTGAGCTCTCTCTCTGTTTTGTTCTAGCCATGAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000315367.4
ENST00000519516.1
CDS-3UTR CCA 90 bp GCAAATTCATGGCTAGAACAAAACAGAGAGAGAGCTCAGAATCTTACATTTCCCCATTTGCGGCAATGGTaGCGACGATTAACAGGTGTG +
Preference number: 4 (lower is better)
Translates to: ANSWLEQNRERAQNLTFPHLRQW*RRLTGV
Trigger: CACACCTGTTAATCGTCGCCACCATTGCCGCAAATG...GGGAAATGTAAGATTCTGAGCTCTCTCTCTGTTTTGTTCTAGCCATGAATTTGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000315367.4
ENST00000519516.1
CDS-3UTR CCA 90 bp AAATTCATGGCTAGAACAAAACAGAGAGAGAGCTCAGAATCTTACATTTCCCCCCCACATTTGCGGCAATaGTGGCGACGATTAACAGGT +
Preference number: 4 (lower is better)
Translates to: KFMARTKQRESSESYISPPHLRQ*WRRLTG
Trigger: ACCTGTTAATCGTCGCCACCATTGCCGCAAATGTGG...GGGGGAAATGTAAGATTCTGAGCTCTCTCTCTGTTTTGTTCTAGCCATGAATTT
44% GC, longest homopolymer 7 nt, total homopolymer stretches 11 nt.
Matches the following 2 transcripts:
ENST00000315367.4
ENST00000519516.1
CDS-3UTR CCA 90 bp AATTCATGGCTAGAACAAAACAGAGAGAGAGCTCAGAATCTTACATTTCCCCCACCACATTTGCGGCAATaGTGGCGACGATTAACAGGT +
Preference number: 4 (lower is better)
Translates to: NSWLEQNRERAQNLTFPPPHLRQ*WRRLTG
Trigger: ACCTGTTAATCGTCGCCACCATTGCCGCAAATGTGG...TGGGGGAAATGTAAGATTCTGAGCTCTCTCTCTGTTTTGTTCTAGCCATGAATT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000315367.4
ENST00000519516.1
CDS-3UTR CCA 90 bp TCATGGCTAGAACAAAACAGAGAGAGAGCTCAGAATCTTACATTTCCCCCAAAGACAGGCTTAGAGGACTaGCTGGGAAGAAGAAATCTC +
Preference number: 4 (lower is better)
Translates to: SWLEQNRERAQNLTFPPKTGLED*LGRRNL
Trigger: GAGATTTCTTCTTCCCAGCCAGTCCTCTAAGCCTGT...CTTTGGGGGAAATGTAAGATTCTGAGCTCTCTCTCTGTTTTGTTCTAGCCATGA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000315367.4
ENST00000519516.1
CDS-3UTR GCA 90 bp GTTTCTCAGGCAAATTCATGGCTAGAACAAAACAGAGAGAGAGCTCAGAATCTTACGCATACATACAGTTaGCTCAGAGTCAGGAACCCA +
Preference number: 4 (lower is better)
Translates to: VSQANSWLEQNRERAQNLTHTYS*LRVRNP
Trigger: TGGGTTCCTGACTCTGAGGCAACTGTATGTATGCGT...AAGATTCTGAGCTCTCTCTCTGTTTTGTTCTAGCCATGAATTTGCCTGAGAAAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000315367.4
ENST00000519516.1
CDS-3UTR GCA 90 bp GTTACAAGTTTCTCAGGCAAATTCATGGCTAGAACAAAACAGAGAGAGAGCTCACAACAAAACCACATTTaGGGCAATGGTGGCGACGAT +
Preference number: 4 (lower is better)
Translates to: VTSFSGKFMARTKQRESSQQNHI*GNGGDD
Trigger: ATCGTCGCCACCATTGCCGCAAATGTGGTTTTGTTG...TGAGCTCTCTCTCTGTTTTGTTCTAGCCATGAATTTGCCTGAGAAACTTGTAAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000315367.4
ENST00000519516.1
CDS-3UTR GCA 90 bp GCAAATTCATGGCTAGAACAAAACAGAGAGAGAGCTCAGAATCTTACATTTCCCCAACAAAACCACATTTaGGGCAATGGTGGCGACGAT +
Preference number: 4 (lower is better)
Translates to: ANSWLEQNRERAQNLTFPQQNHI*GNGGDD
Trigger: ATCGTCGCCACCATTGCCGCAAATGTGGTTTTGTTG...GGGAAATGTAAGATTCTGAGCTCTCTCTCTGTTTTGTTCTAGCCATGAATTTGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000315367.4
ENST00000519516.1
CDS-3UTR CCA 90 bp GCAAATTCATGGCTAGAACAAAACAGAGAGAGAGCTCAGAATCTTACATTTCCCACAGGCTTAGAGGACTaGCTGGGAAGAAGAAATCTC +
Preference number: 4 (lower is better)
Translates to: ANSWLEQNRERAQNLTFPTGLED*LGRRNL
Trigger: GAGATTTCTTCTTCCCAGCCAGTCCTCTAAGCCTGT...GGGAAATGTAAGATTCTGAGCTCTCTCTCTGTTTTGTTCTAGCCATGAATTTGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000315367.4
ENST00000519516.1
CDS-3UTR TCA 90 bp AAATTCATGGCTAGAACAAAACAGAGAGAGAGCTCAGAATCTTACATTTCCCCCATGATTCATCCATTCTaGTTTCTCCGTAGCAGTGGC +
Preference number: 4 (lower is better)
Translates to: KFMARTKQRESSESYISPMIHPF*FLRSSG
Trigger: GCCACTGCTACGGAGAAATCAGAATGGATGAATCAT...GGGGGAAATGTAAGATTCTGAGCTCTCTCTCTGTTTTGTTCTAGCCATGAATTT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000315367.4
ENST00000519516.1
CDS-3UTR TCA 90 bp GTTACAAGTTTCTCAGGCAAATTCATGGCTAGAACAAAACAGAGAGAGAGCTCAATGATTCATCCATTCTaGTTTCTCCGTAGCAGTGGC +
Preference number: 4 (lower is better)
Translates to: VTSFSGKFMARTKQRESSMIHPF*FLRSSG
Trigger: GCCACTGCTACGGAGAAATCAGAATGGATGAATCAT...TGAGCTCTCTCTCTGTTTTGTTCTAGCCATGAATTTGCCTGAGAAACTTGTAAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000315367.4
ENST00000519516.1
CDS-3UTR CCA 90 bp TTCATGGCTAGAACAAAACAGAGAGAGAGCTCAGAATCTTACATTTCCCCCAAACAGCATGTTCATTACTaGGTGTCTTCCCACTTTTGG +
Preference number: 4 (lower is better)
Translates to: FMARTKQRESSESYISPKQHVHY*VSSHFW
Trigger: CCAAAAGTGGGAAGACACCCAGTAATGAACATGCTG...TTTGGGGGAAATGTAAGATTCTGAGCTCTCTCTCTGTTTTGTTCTAGCCATGAA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000315367.4
ENST00000519516.1
CDS-3UTR CCA 90 bp AATTCATGGCTAGAACAAAACAGAGAGAGAGCTCAGAATCTTACATTTCCCCCACAGCATGTTCATTACTaGGTGTCTTCCCACTTTTGG +
Preference number: 4 (lower is better)
Translates to: NSWLEQNRERAQNLTFPPQHVHY*VSSHFW
Trigger: CCAAAAGTGGGAAGACACCCAGTAATGAACATGCTG...TGGGGGAAATGTAAGATTCTGAGCTCTCTCTCTGTTTTGTTCTAGCCATGAATT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000315367.4
ENST00000519516.1
CDS-3UTR TCA 90 bp CAGGCAAATTCATGGCTAGAACAAAACAGAGAGAGAGCTCAGAATCTTACATTTGGTATAGTTAAAGGTTaGCCAGCTGCTCCAAAACAG +
Preference number: 4 (lower is better)
Translates to: QANSWLEQNRERAQNLTFGIVKG*PAAPKQ
Trigger: CTGTTTTGGAGCAGCTGGTCAACCTTTAACTATACC...AAATGTAAGATTCTGAGCTCTCTCTCTGTTTTGTTCTAGCCATGAATTTGCCTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000315367.4
ENST00000519516.1
CDS-3UTR GCA 90 bp TTCTCAGGCAAATTCATGGCTAGAACAAAACAGAGAGAGAGCTCAGAATCTTACATTTGCTTCACTGTTTaGCAAGCGATCCACCATCTT +
Preference number: 4 (lower is better)
Translates to: FSGKFMARTKQRESSESYICFTV*QAIHHL
Trigger: AAGATGGTGGATCGCTTGGCAAACAGTGAAGCAAAT...GTAAGATTCTGAGCTCTCTCTCTGTTTTGTTCTAGCCATGAATTTGCCTGAGAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000315367.4
ENST00000519516.1
CDS-3UTR TCA 90 bp GTTACAAGTTTCTCAGGCAAATTCATGGCTAGAACAAAACAGAGAGAGAGCTCATCAGATAGCCACACCTaGTTAAATACTCCCAAATGT +
Preference number: 4 (lower is better)
Translates to: VTSFSGKFMARTKQRESSSDSHT*LNTPKC
Trigger: ACATTTGGGAGTATTTAATCAGGTGTGGCTATCTGA...TGAGCTCTCTCTCTGTTTTGTTCTAGCCATGAATTTGCCTGAGAAACTTGTAAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000315367.4
ENST00000519516.1
CDS-3UTR GCA 90 bp TTCATGGCTAGAACAAAACAGAGAGAGAGCTCAGAATCTTACATTTCCCCCAAATATACGTCTAGTATTTaGTTCACTGTTTGCCAAGCG +
Preference number: 4 (lower is better)
Translates to: FMARTKQRESSESYISPKYTSSI*FTVCQA
Trigger: CGCTTGGCAAACAGTGAAGCAAATACTAGACGTATA...TTTGGGGGAAATGTAAGATTCTGAGCTCTCTCTCTGTTTTGTTCTAGCCATGAA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000315367.4
ENST00000519516.1
CDS-3UTR GCA 90 bp AAATTCATGGCTAGAACAAAACAGAGAGAGAGCTCAGAATCTTACATTTCCCCCTATACGTCTAGTATTTaGTTCACTGTTTGCCAAGCG +
Preference number: 4 (lower is better)
Translates to: KFMARTKQRESSESYISPYTSSI*FTVCQA
Trigger: CGCTTGGCAAACAGTGAAGCAAATACTAGACGTATA...GGGGGAAATGTAAGATTCTGAGCTCTCTCTCTGTTTTGTTCTAGCCATGAATTT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000315367.4
ENST00000519516.1
CDS-3UTR GCA 90 bp AATTCATGGCTAGAACAAAACAGAGAGAGAGCTCAGAATCTTACATTTCCCCCATGTGTCCTTAGTCACTaGTATCATCATCGTCATCAT +
Preference number: 4 (lower is better)
Translates to: NSWLEQNRERAQNLTFPPCVLSH*YHHRHH
Trigger: ATGATGACGATGATGATAGCAGTGACTAAGGACACA...TGGGGGAAATGTAAGATTCTGAGCTCTCTCTCTGTTTTGTTCTAGCCATGAATT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000315367.4
ENST00000519516.1
CDS-3UTR GCA 90 bp AATTCATGGCTAGAACAAAACAGAGAGAGAGCTCAGAATCTTACATTTCCCCCAAAACTTAAAGTGGTCTaGCTTGAGGCCATTCTTACA +
Preference number: 4 (lower is better)
Translates to: NSWLEQNRERAQNLTFPPKLKVV*LEAILT
Trigger: TGTAAGAATGGCCTCAAGGCAGACCACTTTAAGTTT...TGGGGGAAATGTAAGATTCTGAGCTCTCTCTCTGTTTTGTTCTAGCCATGAATT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000315367.4
CDS-3UTR CCA 90 bp TTCATGGCTAGAACAAAACAGAGAGAGAGCTCAGAATCTTACATTTCCCCCAAATCTCAGGCAAATTCATaGCTAGAACAAAACAGAGAG +
Preference number: 4 (lower is better)
Translates to: FMARTKQRESSESYISPKSQANS*LEQNRE
Trigger: CTCTCTGTTTTGTTCTAGCCATGAATTTGCCTGAGA...TTTGGGGGAAATGTAAGATTCTGAGCTCTCTCTCTGTTTTGTTCTAGCCATGAA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000315367.4
ENST00000519516.1
CDS-3UTR CCA 90 bp ATGGCTAGAACAAAACAGAGAGAGAGCTCAGAATCTTACATTTCCCCCAAAGTTTCTCAGGCAAATTCATaGCTAGAACAAAACAGAGAG +
Preference number: 4 (lower is better)
Translates to: MARTKQRESSESYISPKVSQANS*LEQNRE
Trigger: CTCTCTGTTTTGTTCTAGCCATGAATTTGCCTGAGA...AACTTTGGGGGAAATGTAAGATTCTGAGCTCTCTCTCTGTTTTGTTCTAGCCAT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000315367.4
ENST00000519516.1
CDS-3UTR TCA 90 bp AAATTCATGGCTAGAACAAAACAGAGAGAGAGCTCAGAATCTTACATTTCCCCCCAACAACGTAGTACATaGCCTGTTAAAACAAACATC +
Preference number: 4 (lower is better)
Translates to: KFMARTKQRESSESYISPQQRST*PVKTNI
Trigger: GATGTTTGTTTTAACAGGTCATGTACTACGTTGTTG...GGGGGAAATGTAAGATTCTGAGCTCTCTCTCTGTTTTGTTCTAGCCATGAATTT
39% GC, longest homopolymer 6 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENST00000315367.4
CDS-3UTR TCA 90 bp GCTAGAACAAAACAGAGAGAGAGCTCAGAATCTTACATTTCCCCCAAAGTTGATGAATCAAACTTCTCATaGCATTTGCGGTATATTCAG +
Preference number: 4 (lower is better)
Translates to: ARTKQRESSESYISPKVDESNFS*HLRYIQ
Trigger: CTGAATATACCGCAAATGTCATGAGAAGTTTGATTC...ATCAACTTTGGGGGAAATGTAAGATTCTGAGCTCTCTCTCTGTTTTGTTCTAGC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000315367.4
CDS-3UTR TCA 90 bp TTCATGGCTAGAACAAAACAGAGAGAGAGCTCAGAATCTTACATTTCCCCCAAATCCATCACAAGTTACTaGATCAAACTTCTCATGACA +
Preference number: 4 (lower is better)
Translates to: FMARTKQRESSESYISPKSITSY*IKLLMT
Trigger: TGTCATGAGAAGTTTGATTCAGTAACTTGTGATGGA...TTTGGGGGAAATGTAAGATTCTGAGCTCTCTCTCTGTTTTGTTCTAGCCATGAA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000315367.4
CDS-3UTR GCA 90 bp AATTCATGGCTAGAACAAAACAGAGAGAGAGCTCAGAATCTTACATTTCCCCCAAACAGGTGTGAATTTTaGTTTCTGACAACGCATACA +
Preference number: 4 (lower is better)
Translates to: NSWLEQNRERAQNLTFPPNRCEF*FLTTHT
Trigger: TGTATGCGTTGTCAGAAAGCAAAATTCACACCTGTT...TGGGGGAAATGTAAGATTCTGAGCTCTCTCTCTGTTTTGTTCTAGCCATGAATT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000315367.4
ENST00000519516.1
CDS CCA 90 bp GTGTGCTGTCCGCAGCCCCGCGCAGCCGGCGCGATCCAGACGCGGTaGGCGGGCTGGCCGCCAGCGCAGCCGCTCGCAGGTGACTCCCCC +
Preference number: 5 (lower is better)
Translates to: VCCPQPRAAGAIQTR*AGWPPAQPLAGDSP
Trigger: GGGGGAGTCACCTGCGAGCGGCTGCGCTGGCGGCCAGCCCGCCCACCGCGTCTGGATCGCGCCGGCTGCGCGGGGCTGCGGACAGCACAC
79% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000315367.4
CDS GCA 90 bp GGCGAAGGTCCGATCCTCCTGGTCGCGGACGCAGGGCGCGGACTCTaGCCGTTCCCCGCCGGGGCCTTCCAGGGTGTGTGCTGTCCGCAG +
Preference number: 5 (lower is better)
Translates to: GEGPILLVADAGRGL*PFPAGAFQGVCCPQ
Trigger: CTGCGGACAGCACACACCCTGGAAGGCCCCGGCGGGGAACGGGCAGAGTCCGCGCCCTGCGTCCGCGACCAGGAGGATCGGACCTTCGCC
73% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000315367.4
CDS GCA 90 bp ACAGTTTTCCACTATACTTATACGTCTAGTATTTGCTTCACTGTTTaGCAAGCGATCCACCATCTTTCACTAATAGCCCGGCGGCCCCCG +
Preference number: 5 (lower is better)
Translates to: TVFHYTYTSSICFTV*QAIHHLSLIARRPP
Trigger: CGGGGGCCGCCGGGCTATTAGTGAAAGATGGTGGATCGCTTGGCAAACAGTGAAGCAAATACTAGACGTATAAGTATAGTGGAAAACTGT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000519516.1
CDS GCA 90 bp ACAGTTTTCCACTATACTTATACGTCTAGTATTTGCTTCACTGTTTaGCAAGCGATCCACCATCTTTCACTAATAGCCCCGACGGCCGCG +
Preference number: 5 (lower is better)
Translates to: TVFHYTYTSSICFTV*QAIHHLSLIAPTAA
Trigger: CGCGGCCGTCGGGGCTATTAGTGAAAGATGGTGGATCGCTTGGCAAACAGTGAAGCAAATACTAGACGTATAAGTATAGTGGAAAACTGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000315367.4
CDS GCA 90 bp ACCACATTTGCGGCAATGGTGGCGACGATTAACAGGTGTGAATTTTaGTTTCTGACAACGCATACATACAGTTGCCTCAGAGTCAGGAAC +
Preference number: 5 (lower is better)
Translates to: TTFAAMVATINRCEF*FLTTHTYSCLRVRN
Trigger: GTTCCTGACTCTGAGGCAACTGTATGTATGCGTTGTCAGAAAGCAAAATTCACACCTGTTAATCGTCGCCACCATTGCCGCAAATGTGGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000315367.4
ENST00000519516.1
CDS-3UTR CAA 90 bp TTCATGGCTAGAACAAAACAGAGAGAGAGCTCAGAATCTTACATTTCCCCCAAAAACGCATACATACAGTaGCCTCAGAGTCAGGAACCC +
Preference number: 5 (lower is better)
Translates to: FMARTKQRESSESYISPKNAYIQ*PQSQEP
Trigger: GGGTTCCTGACTCTGAGGCAACTGTATGTATGCGTT...TTTGGGGGAAATGTAAGATTCTGAGCTCTCTCTCTGTTTTGTTCTAGCCATGAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENST00000315367.4
ENST00000519516.1
CDS-3UTR CAA 90 bp GTTACAAGTTTCTCAGGCAAATTCATGGCTAGAACAAAACAGAGAGAGAGCTCAAACGCATACATACAGTaGCCTCAGAGTCAGGAACCC +
Preference number: 5 (lower is better)
Translates to: VTSFSGKFMARTKQRESSNAYIQ*PQSQEP
Trigger: GGGTTCCTGACTCTGAGGCAACTGTATGTATGCGTT...TGAGCTCTCTCTCTGTTTTGTTCTAGCCATGAATTTGCCTGAGAAACTTGTAAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000315367.4
ENST00000519516.1
CDS-3UTR CAA 90 bp GTTTCTCAGGCAAATTCATGGCTAGAACAAAACAGAGAGAGAGCTCAGAATCTTACAACAAAACCACATTaGCGGCAATGGTGGCGACGA +
Preference number: 5 (lower is better)
Translates to: VSQANSWLEQNRERAQNLTTKPH*RQWWRR
Trigger: TCGTCGCCACCATTGCCGCAAATGTGGTTTTGTTGT...AAGATTCTGAGCTCTCTCTCTGTTTTGTTCTAGCCATGAATTTGCCTGAGAAAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000315367.4
ENST00000519516.1
CDS-3UTR CAA 90 bp GCAAATTCATGGCTAGAACAAAACAGAGAGAGAGCTCAGAATCTTACATTTCCCACAACAAAACCACATTaGCGGCAATGGTGGCGACGA +
Preference number: 5 (lower is better)
Translates to: ANSWLEQNRERAQNLTFPTTKPH*RQWWRR
Trigger: TCGTCGCCACCATTGCCGCAAATGTGGTTTTGTTGT...GGGAAATGTAAGATTCTGAGCTCTCTCTCTGTTTTGTTCTAGCCATGAATTTGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000315367.4
ENST00000519516.1
CDS-3UTR CAA 90 bp TTCATGGCTAGAACAAAACAGAGAGAGAGCTCAGAATCTTACATTTCCCCCAAATATTTGCTTCACTGTTaGCCAAGCGATCCACCATCT +
Preference number: 5 (lower is better)
Translates to: FMARTKQRESSESYISPKYLLHC*PSDPPS
Trigger: AGATGGTGGATCGCTTGGCAAACAGTGAAGCAAATA...TTTGGGGGAAATGTAAGATTCTGAGCTCTCTCTCTGTTTTGTTCTAGCCATGAA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000315367.4
ENST00000519516.1
CDS-3UTR CAA 90 bp GTTTCTCAGGCAAATTCATGGCTAGAACAAAACAGAGAGAGAGCTCAGAATCTTAAAAACTGCCTTGCTTaGGGCTTTTTCCTGCACAAC +
Preference number: 5 (lower is better)
Translates to: VSQANSWLEQNRERAQNLKNCLA*GFFLHN
Trigger: GTTGTGCAGGAAAAAGCCCAAAGCAAGGCAGTTTTT...AAGATTCTGAGCTCTCTCTCTGTTTTGTTCTAGCCATGAATTTGCCTGAGAAAC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENST00000315367.4
ENST00000519516.1
CDS-3UTR CAA 90 bp TTCTCAGGCAAATTCATGGCTAGAACAAAACAGAGAGAGAGCTCAGAATCTTACAAAAACTGCCTTGCTTaGGGCTTTTTCCTGCACAAC +
Preference number: 5 (lower is better)
Translates to: FSGKFMARTKQRESSESYKNCLA*GFFLHN
Trigger: GTTGTGCAGGAAAAAGCCCAAAGCAAGGCAGTTTTT...GTAAGATTCTGAGCTCTCTCTCTGTTTTGTTCTAGCCATGAATTTGCCTGAGAA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENST00000315367.4
ENST00000519516.1
CDS GCA 90 bp AGCTGCTCCAAAACAGTTTTCCACTATACTTATACGTCTAGTATTTaGTTCACTGTTTGCCAAGCGATCCACCATCTTTCACTAATAGCC +
Preference number: 5 (lower is better)
Translates to: SCSKTVFHYTYTSSI*FTVCQAIHHLSLIA
Trigger: GGCTATTAGTGAAAGATGGTGGATCGCTTGGCAAACAGTGAAGCAAATACTAGACGTATAAGTATAGTGGAAAACTGTTTTGGAGCAGCT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000315367.4
ENST00000519516.1
CDS-3UTR CAA 90 bp GCTAGAACAAAACAGAGAGAGAGCTCAGAATCTTACATTTCCCCCAAAGTTGATGGTGTCTTCCCACTTTaGGAGAGTAAATCAGTAACA +
Preference number: 5 (lower is better)
Translates to: ARTKQRESSESYISPKVDGVFPL*ESKSVT
Trigger: TGTTACTGATTTACTCTCCAAAAGTGGGAAGACACC...ATCAACTTTGGGGGAAATGTAAGATTCTGAGCTCTCTCTCTGTTTTGTTCTAGC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000315367.4
ENST00000519516.1
CDS-3UTR CAA 90 bp AATTCATGGCTAGAACAAAACAGAGAGAGAGCTCAGAATCTTACATTTCCCCCAGGTGTCTTCCCACTTTaGGAGAGTAAATCAGTAACA +
Preference number: 5 (lower is better)
Translates to: NSWLEQNRERAQNLTFPPGVFPL*ESKSVT
Trigger: TGTTACTGATTTACTCTCCAAAAGTGGGAAGACACC...TGGGGGAAATGTAAGATTCTGAGCTCTCTCTCTGTTTTGTTCTAGCCATGAATT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000315367.4
ENST00000519516.1
CDS-3UTR CAA 90 bp GTTACAAGTTTCTCAGGCAAATTCATGGCTAGAACAAAACAGAGAGAGAGCTCACCTTGGTTCCTGAATTaGCTAGATTCCTATGTACCA +
Preference number: 5 (lower is better)
Translates to: VTSFSGKFMARTKQRESSPWFLN*LDSYVP
Trigger: TGGTACATAGGAATCTAGCAAATTCAGGAACCAAGG...TGAGCTCTCTCTCTGTTTTGTTCTAGCCATGAATTTGCCTGAGAAACTTGTAAC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000315367.4
CDS-3UTR CAA 90 bp GTTACAAGTTTCTCAGGCAAATTCATGGCTAGAACAAAACAGAGAGAGAGCTCATCACAACATTTCCCCTaGGTTCCTGAATTTGCTAGA +
Preference number: 5 (lower is better)
Translates to: VTSFSGKFMARTKQRESSSQHFP*VPEFAR
Trigger: TCTAGCAAATTCAGGAACCAAGGGGAAATGTTGTGA...TGAGCTCTCTCTCTGTTTTGTTCTAGCCATGAATTTGCCTGAGAAACTTGTAAC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000315367.4
CDS-3UTR CAA 90 bp TTCTCAGGCAAATTCATGGCTAGAACAAAACAGAGAGAGAGCTCAGAATCTTACAAGTCTCCCTCATCTTaGATGGAATCAATAGTGACA +
Preference number: 5 (lower is better)
Translates to: FSGKFMARTKQRESSESYKSPSS*MESIVT
Trigger: TGTCACTATTGATTCCATCAAAGATGAGGGAGACTT...GTAAGATTCTGAGCTCTCTCTCTGTTTTGTTCTAGCCATGAATTTGCCTGAGAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000315367.4
ENST00000519516.1
CDS-3UTR CAA 90 bp AAATTCATGGCTAGAACAAAACAGAGAGAGAGCTCAGAATCTTACATTTCCCCCAAGTCTCCCTCATCTTaGATGGAATCAATAGTGACA +
Preference number: 5 (lower is better)
Translates to: KFMARTKQRESSESYISPKSPSS*MESIVT
Trigger: TGTCACTATTGATTCCATCAAAGATGAGGGAGACTT...GGGGGAAATGTAAGATTCTGAGCTCTCTCTCTGTTTTGTTCTAGCCATGAATTT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000315367.4
ENST00000519516.1
CDS-3UTR CAA 90 bp GTTTCTCAGGCAAATTCATGGCTAGAACAAAACAGAGAGAGAGCTCAGAATCTTGATTTAGTTGGTGTCTaGATTAGCCATCCATTCCTT +
Preference number: 5 (lower is better)
Translates to: VSQANSWLEQNRERAQNLDLVGV*ISHPFL
Trigger: AAGGAATGGATGGCTAATCAAGACACCAACTAAATC...AAGATTCTGAGCTCTCTCTCTGTTTTGTTCTAGCCATGAATTTGCCTGAGAAAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000315367.4
ENST00000519516.1
CDS-3UTR CAA 90 bp TTCTCAGGCAAATTCATGGCTAGAACAAAACAGAGAGAGAGCTCAGAATCTTACGATTTAGTTGGTGTCTaGATTAGCCATCCATTCCTT +
Preference number: 5 (lower is better)
Translates to: FSGKFMARTKQRESSESYDLVGV*ISHPFL
Trigger: AAGGAATGGATGGCTAATCAAGACACCAACTAAATC...GTAAGATTCTGAGCTCTCTCTCTGTTTTGTTCTAGCCATGAATTTGCCTGAGAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000315367.4
ENST00000519516.1
CDS-3UTR CAA 90 bp AAATTCATGGCTAGAACAAAACAGAGAGAGAGCTCAGAATCTTACATTTCCCCCTTAAAGTGGTCTGCCTaGAGGCCATTCTTACATATT +
Preference number: 5 (lower is better)
Translates to: KFMARTKQRESSESYISPLKWSA*RPFLHI
Trigger: AATATGTAAGAATGGCCTCAAGGCAGACCACTTTAA...GGGGGAAATGTAAGATTCTGAGCTCTCTCTCTGTTTTGTTCTAGCCATGAATTT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000315367.4
CDS TCA 90 bp GAATCTTACATTTCCCCCAAAGTTGATTTCTCAGATAGCCACACCTaGTTAAATACTCCCAAATGTGTCCTTAGTCACTGCTATCATCAT +
Preference number: 5 (lower is better)
Translates to: ESYISPKVDFSDSHT*LNTPKCVLSHCYHH
Trigger: ATGATGATAGCAGTGACTAAGGACACATTTGGGAGTATTTAATCAGGTGTGGCTATCTGAGAAATCAACTTTGGGGGAAATGTAAGATTC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000315367.4
ENST00000519516.1
CDS-3UTR CAA 90 bp AAATTCATGGCTAGAACAAAACAGAGAGAGAGCTCAGAATCTTACATTTCCCCCTTCCTACAGGGAGATTaGTATATCTCAGATACTTTC +
Preference number: 5 (lower is better)
Translates to: KFMARTKQRESSESYISPFLQGD*YISDTF
Trigger: GAAAGTATCTGAGATATACAAATCTCCCTGTAGGAA...GGGGGAAATGTAAGATTCTGAGCTCTCTCTCTGTTTTGTTCTAGCCATGAATTT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000315367.4
CDS GCA 72 bp CCGATCCTCCTGGTCGCGGACGCAGGGCGCGGACTCTaGCCGTTCCCCGCCGGGGCCTTCCAGGGTGTGTGC +
Preference number: 6 (lower is better)
Translates to: PILLVADAGRGL*PFPAGAFQGVC
Trigger: GCACACACCCTGGAAGGCCCCGGCGGGGAACGGGCAGAGTCCGCGCCCTGCGTCCGCGACCAGGAGGATCGG
75% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000315367.4
CDS CCA 72 bp GCGGCGGCGACAGCGAAGGCGAAGGTCCGATCCTCCTaGTCGCGGACGCAGGGCGCGGACTCTGCCCGTTCC +
Preference number: 6 (lower is better)
Translates to: AAATAKAKVRSS*SRTQGADSARS
Trigger: GGAACGGGCAGAGTCCGCGCCCTGCGTCCGCGACCAGGAGGATCGGACCTTCGCCTTCGCTGTCGCCGCCGC
74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000315367.4
CDS CCA 72 bp CGGCCGGGAGCGCCCCGTTTCTCACAGACCCCAACATaGCGTCGGCCGCCACCGCCCGCGACGACGACACCT +
Preference number: 6 (lower is better)
Translates to: RPGAPRFSQTPT*RRPPPPATTTP
Trigger: AGGTGTCGTCGTCGCGGGCGGTGGCGGCCGACGCCATGTTGGGGTCTGTGAGAAACGGGGCGCTCCCGGCCG
74% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000519516.1
CDS CCA 72 bp CAGGGCCCACAGACAACAAAACCACATTTGCGGCAATaGTGGCGACGATTAACAGGTGTGAATTTTGCTTTC +
Preference number: 6 (lower is better)
Translates to: QGPQTTKPHLRQ*WRRLTGVNFAF
Trigger: GAAAGCAAAATTCACACCTGTTAATCGTCGCCACCATTGCCGCAAATGTGGTTTTGTTGTCTGTGGGCCCTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000315367.4
ENST00000519516.1
CDS GCA 72 bp GCGGCAATGGTGGCGACGATTAACAGGTGTGAATTTTaGTTTCTGACAACGCATACATACAGTTGCCTCAGA +
Preference number: 6 (lower is better)
Translates to: AAMVATINRCEF*FLTTHTYSCLR
Trigger: TCTGAGGCAACTGTATGTATGCGTTGTCAGAAAGCAAAATTCACACCTGTTAATCGTCGCCACCATTGCCGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000315367.4
ENST00000519516.1
CDS GCA 72 bp CACTATACTTATACGTCTAGTATTTGCTTCACTGTTTaGCAAGCGATCCACCATCTTTCACTAATAGCCCCG +
Preference number: 6 (lower is better)
Translates to: HYTYTSSICFTV*QAIHHLSLIAP
Trigger: CGGGGCTATTAGTGAAAGATGGTGGATCGCTTGGCAAACAGTGAAGCAAATACTAGACGTATAAGTATAGTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000315367.4
CDS GCA 72 bp CACTATACTTATACGTCTAGTATTTGCTTCACTGTTTaGCAAGCGATCCACCATCTTTCACTAATAGCCCGG +
Preference number: 6 (lower is better)
Translates to: HYTYTSSICFTV*QAIHHLSLIAR
Trigger: CCGGGCTATTAGTGAAAGATGGTGGATCGCTTGGCAAACAGTGAAGCAAATACTAGACGTATAAGTATAGTG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000519516.1
CDS TCA 72 bp ATTTCCCCCAAAGTTGATTTCTCAGATAGCCACACCTaGTTAAATACTCCCAAATGTGTCCTTAGTCACTGC +
Preference number: 6 (lower is better)
Translates to: ISPKVDFSDSHT*LNTPKCVLSHC
Trigger: GCAGTGACTAAGGACACATTTGGGAGTATTTAATCAGGTGTGGCTATCTGAGAAATCAACTTTGGGGGAAAT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000315367.4
ENST00000519516.1