Pregenerated sensors for PKP2 (Homo sapiens)
Ensembl gene IDs: ENSG00000057294Ensembl transcript IDs: ENST00000546498.1, ENST00000546741.2, ENST00000546769.1, ENST00000552612.5
Found 57 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | GTTCATGGCTCCATTCCCTCCATTTATGGAAGAGTTGTATCTGCTTaGTCTCTTCCTAGCTGGCCATTCTCAGAGGATAAGAAAGAATAT | + |
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Preference number: 1 (lower is better) Translates to: VHGSIPSIYGRVVSA*SLPSWPFSEDKKEY Trigger: ATATTCTTTCTTATCCTCTGAGAATGGCCAGCTAGGAAGAGAGCAAGCAGATACAACTCTTCCATAAATGGAGGGAATGGAGCCATGAAC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000546741.2 |
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| 3UTR TCA 90 bp | ATTTCAAACGCTTTGTTCCTTAGTTGGAACAGCCAGTCAAGTAGTTaGCCCAAGCATTATAGCAGAAGGACCAAGATAGTGCCCTTTGTT | + |
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Preference number: 1 (lower is better) Translates to: ISNALFLSWNSQSSS*PKHYSRRTKIVPFV Trigger: AACAAAGGGCACTATCTTGGTCCTTCTGCTATAATGCTTGGGTCAACTACTTGACTGGCTGTTCCAACTAAGGAACAAAGCGTTTGAAAT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000546741.2 |
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| 3UTR GCA 90 bp | TGTGTAGGCTGCAGAGTGTATTTCAGCTTACTGGAAAGCTGCTGTTaGAATCAAAATATTTCAAACGCTTTGTTCCTTAGTTGGAACAGC | + |
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Preference number: 1 (lower is better) Translates to: CVGCRVYFSLLESCC*NQNISNALFLSWNS Trigger: GCTGTTCCAACTAAGGAACAAAGCGTTTGAAATATTTTGATTGCAACAGCAGCTTTCCAGTAAGCTGAAATACACTCTGCAGCCTACACA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000546741.2 |
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| 3UTR GCA 90 bp | TACTTCTGTGTAGGCTGCAGAGTGTATTTCAGCTTACTGGAAAGCTaGTGTTGCAATCAAAATATTTCAAACGCTTTGTTCCTTAGTTGG | + |
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Preference number: 1 (lower is better) Translates to: YFCVGCRVYFSLLES*CCNQNISNALFLSW Trigger: CCAACTAAGGAACAAAGCGTTTGAAATATTTTGATTGCAACAGCAGCTTTCCAGTAAGCTGAAATACACTCTGCAGCCTACACAGAAGTA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000546741.2 |
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| 3UTR-3UTR TCA 90 bp | GTGTATTTCAGCTTACTGGAAAGCTGCTGTTGCAATCAAAATATTTCAAACGCTACTCCCGACCTCAGGTaGTCCTCCCGCCTCGGCCTC | + |
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Preference number: 2 (lower is better) Translates to: VYFSLLESCCCNQNISNATPDLR*SSRLGL Trigger: GAGGCCGAGGCGGGAGGATCACCTGAGGTCGGGAGT...AGCGTTTGAAATATTTTGATTGCAACAGCAGCTTTCCAGTAAGCTGAAATACAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000546741.2 |
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| 3UTR-3UTR GCA 90 bp | TTAGTTGGAACAGCCAGTCAAGTAGTTGACCCAAGCATTATAGCAGAAGGACCATTGCTCAGGCTGGAGTaGAATGGCGAGATCTCCGCT | + |
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Preference number: 2 (lower is better) Translates to: LVGTASQVVDPSIIAEGPLLRLE*NGEISA Trigger: AGCGGAGATCTCGCCATTGCACTCCAGCCTGAGCAA...TGGTCCTTCTGCTATAATGCTTGGGTCAACTACTTGACTGGCTGTTCCAACTAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000546741.2 |
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| 3UTR CAA 90 bp | CCTTTTCTTCTGTTCATGGCTCCATTCCCTCCATTTATGGAAGAGTaGTATCTGCTTGCTCTCTTCCTAGCTGGCCATTCTCAGAGGATA | + |
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Preference number: 2 (lower is better) Translates to: PFLLFMAPFPPFMEE*YLLALFLAGHSQRI Trigger: TATCCTCTGAGAATGGCCAGCTAGGAAGAGAGCAAGCAGATACAACTCTTCCATAAATGGAGGGAATGGAGCCATGAACAGAAGAAAAGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000546741.2 |
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| 3UTR-3UTR GCA 90 bp | GTGTATTTCAGCTTACTGGAAAGCTGCTGTTGCAATCAAAATATTTCAAACGCTGGGATTACCGGCATGTaGCACCACGCCCGGCTAATT | + |
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Preference number: 2 (lower is better) Translates to: VYFSLLESCCCNQNISNAGITGM*HHARLI Trigger: AATTAGCCGGGCGTGGTGGCACATGCCGGTAATCCC...AGCGTTTGAAATATTTTGATTGCAACAGCAGCTTTCCAGTAAGCTGAAATACAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000546741.2 |
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| 3UTR-3UTR CCA 90 bp | GTGTATTTCAGCTTACTGGAAAGCTGCTGTTGCAATCAAAATATTTCAAACGCTCAGGCTGGAGTGCAATaGCGAGATCTCCGCTCACTG | + |
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Preference number: 2 (lower is better) Translates to: VYFSLLESCCCNQNISNAQAGVQ*RDLRSL Trigger: CAGTGAGCGGAGATCTCGCCATTGCACTCCAGCCTG...AGCGTTTGAAATATTTTGATTGCAACAGCAGCTTTCCAGTAAGCTGAAATACAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000546741.2 |
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| 3UTR CAA 90 bp | TTAATTCAGCACCTGCACAGCGCCCGGCATGAAGAACATACTCATTaGATGCTTGCTGAATTCATCACACAGGTGATGCATTACTTTGTA | + |
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Preference number: 2 (lower is better) Translates to: LIQHLHSARHEEHTH*MLAEFITQVMHYFV Trigger: TACAAAGTAATGCATCACCTGTGTGATGAATTCAGCAAGCATCAAATGAGTATGTTCTTCATGCCGGGCGCTGTGCAGGTGCTGAATTAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000546741.2 |
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| 3UTR-3UTR TCA 90 bp | TTAGTTGGAACAGCCAGTCAAGTAGTTGACCCAAGCATTATAGCAGAAGGACCATCATTTGATGCTTGCTaGATTCATCACACAGGTGAT | + |
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Preference number: 2 (lower is better) Translates to: LVGTASQVVDPSIIAEGPSFDAC*IHHTGD Trigger: ATCACCTGTGTGATGAATTCAGCAAGCATCAAATGA...TGGTCCTTCTGCTATAATGCTTGGGTCAACTACTTGACTGGCTGTTCCAACTAA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000546741.2 |
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| 3UTR-3UTR CCA 90 bp | GTGTATTTCAGCTTACTGGAAAGCTGCTGTTGCAATCAAAATATTTCAAACGCTCTTTTCTTCTGTTCATaGCTCCATTCCCTCCATTTA | + |
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Preference number: 2 (lower is better) Translates to: VYFSLLESCCCNQNISNALFFCS*LHSLHL Trigger: TAAATGGAGGGAATGGAGCCATGAACAGAAGAAAAG...AGCGTTTGAAATATTTTGATTGCAACAGCAGCTTTCCAGTAAGCTGAAATACAC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000546741.2 |
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| 3UTR-3UTR CCA 90 bp | GTGTATTTCAGCTTACTGGAAAGCTGCTGTTGCAATCAAAATATTTCAAACGCTTATTTTTCTAGCGGTTaGCTTCCTTCTTCAAACTTT | + |
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Preference number: 2 (lower is better) Translates to: VYFSLLESCCCNQNISNAYFSSG*LPSSNF Trigger: AAAGTTTGAAGAAGGAAGCCAACCGCTAGAAAAATA...AGCGTTTGAAATATTTTGATTGCAACAGCAGCTTTCCAGTAAGCTGAAATACAC 36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000546741.2 |
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| 3UTR TCA 72 bp | GCTTTGTTCCTTAGTTGGAACAGCCAGTCAAGTAGTTaGCCCAAGCATTATAGCAGAAGGACCAAGATAGTG | + |
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Preference number: 3 (lower is better) Translates to: ALFLSWNSQSSS*PKHYSRRTKIV Trigger: CACTATCTTGGTCCTTCTGCTATAATGCTTGGGTCAACTACTTGACTGGCTGTTCCAACTAAGGAACAAAGC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000546741.2 |
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| 3UTR-3UTR CAA 90 bp | TTAGTTGGAACAGCCAGTCAAGTAGTTGACCCAAGCATTATAGCAGAAGGACCACCATTTATGGAAGAGTaGTATCTGCTTGCTCTCTTC | + |
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Preference number: 3 (lower is better) Translates to: LVGTASQVVDPSIIAEGPPFMEE*YLLALF Trigger: GAAGAGAGCAAGCAGATACAACTCTTCCATAAATGG...TGGTCCTTCTGCTATAATGCTTGGGTCAACTACTTGACTGGCTGTTCCAACTAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000546741.2 |
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| 3UTR-3UTR CAA 90 bp | TTAGTTGGAACAGCCAGTCAAGTAGTTGACCCAAGCATTATAGCAGAAGGACCAAAGCAAGCAGAGTCTTaGTGTTTAATTCAGCACCTG | + |
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Preference number: 3 (lower is better) Translates to: LVGTASQVVDPSIIAEGPKQAES*CLIQHL Trigger: CAGGTGCTGAATTAAACACAAAGACTCTGCTTGCTT...TGGTCCTTCTGCTATAATGCTTGGGTCAACTACTTGACTGGCTGTTCCAACTAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000546741.2 |
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| 3UTR-3UTR CAA 90 bp | TTAGTTGGAACAGCCAGTCAAGTAGTTGACCCAAGCATTATAGCAGAAGGACCAAGATTATGTGTGGAGTaGGGATTAAATTTCCAACCA | + |
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Preference number: 3 (lower is better) Translates to: LVGTASQVVDPSIIAEGPRLCVE*GLNFQP Trigger: TGGTTGGAAATTTAATCCCAACTCCACACATAATCT...TGGTCCTTCTGCTATAATGCTTGGGTCAACTACTTGACTGGCTGTTCCAACTAA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000546741.2 |
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| 3UTR-3UTR CAA 90 bp | TTAGTTGGAACAGCCAGTCAAGTAGTTGACCCAAGCATTATAGCAGAAGGACCAGAAGAACATACTCATTaGATGCTTGCTGAATTCATC | + |
|
Preference number: 3 (lower is better) Translates to: LVGTASQVVDPSIIAEGPEEHTH*MLAEFI Trigger: GATGAATTCAGCAAGCATCAAATGAGTATGTTCTTC...TGGTCCTTCTGCTATAATGCTTGGGTCAACTACTTGACTGGCTGTTCCAACTAA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000546741.2 |
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| 3UTR TCA 72 bp | CAAGATAGTGCCCTTTGTTCTACCATATCAACTCTGTaGACTGTGAAATATTCATTCTGTTCCCTCCTAGAA | + |
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Preference number: 3 (lower is better) Translates to: QDSALCSTISTL*TVKYSFCSLLE Trigger: TTCTAGGAGGGAACAGAATGAATATTTCACAGTTCACAGAGTTGATATGGTAGAACAAAGGGCACTATCTTG 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000546741.2 |
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| 3UTR TCA 72 bp | TTTCCAACCATTGCTGACAGACACATACTTCATATGTaGGATGGATTCTCATATCTATCTCAGCAATTGTTT | + |
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Preference number: 3 (lower is better) Translates to: FPTIADRHILHM*DGFSYLSQQLF Trigger: AAACAATTGCTGAGATAGATATGAGAATCCATCTCACATATGAAGTATGTGTCTGTCAGCAATGGTTGGAAA 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000546741.2 |
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| CDS-3UTR GCA 90 bp | TCAGAGGATAAGAAAGAATATCTAATATGCCTCCTGTGTCTCCTACGCAGGGGATTAGCACTGGACCGTTaGCCACGGAGCTGCGGCCCT | + |
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Preference number: 4 (lower is better) Translates to: SEDKKEYLICLLCLLRRGLALDR*PRSCGP Trigger: AGGGCCGCAGCTCCGTGGGCAACGGTCCAGTGCTAA...TCCCCTGCGTAGGAGACACAGGAGGCATATTAGATATTCTTTCTTATCCTCTGA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000546741.2 |
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| CDS-3UTR GCA 90 bp | TCAGAGGATAAGAAAGAATATCTAATATGCCTCCTGTGTCTCCTACGCAGGGGAGGGATTACCGGCATGTaGCACCACGCCCGGCTAATT | + |
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Preference number: 4 (lower is better) Translates to: SEDKKEYLICLLCLLRRGGITGM*HHARLI Trigger: AATTAGCCGGGCGTGGTGGCACATGCCGGTAATCCC...TCCCCTGCGTAGGAGACACAGGAGGCATATTAGATATTCTTTCTTATCCTCTGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000546741.2 |
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| CDS-3UTR CCA 90 bp | TTAGTTGGAACAGCCAGTCAAGTAGTTGACCCAAGCATTATAGCAGAAGGACCACAGGCTGGAGTGCAATaGCGAGATCTCCGCTCACTG | + |
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Preference number: 4 (lower is better) Translates to: LVGTASQVVDPSIIAEGPQAGVQ*RDLRSL Trigger: CAGTGAGCGGAGATCTCGCCATTGCACTCCAGCCTG...TGGTCCTTCTGCTATAATGCTTGGGTCAACTACTTGACTGGCTGTTCCAACTAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000546741.2 |
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| 3UTR CAA 72 bp | CTGTTCATGGCTCCATTCCCTCCATTTATGGAAGAGTaGTATCTGCTTGCTCTCTTCCTAGCTGGCCATTCT | + |
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Preference number: 4 (lower is better) Translates to: LFMAPFPPFMEE*YLLALFLAGHS Trigger: AGAATGGCCAGCTAGGAAGAGAGCAAGCAGATACAACTCTTCCATAAATGGAGGGAATGGAGCCATGAACAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000546741.2 |
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| CDS-3UTR TCA 90 bp | TTAGTTGGAACAGCCAGTCAAGTAGTTGACCCAAGCATTATAGCAGAAGGACCACTACGCAGGGGAAGCTaGTTTGGTTTCAGTTTAGCA | + |
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Preference number: 4 (lower is better) Translates to: LVGTASQVVDPSIIAEGPLRRGS*FGFSLA Trigger: TGCTAAACTGAAACCAAATCAGCTTCCCCTGCGTAG...TGGTCCTTCTGCTATAATGCTTGGGTCAACTACTTGACTGGCTGTTCCAACTAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000546741.2 |
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| CDS-3UTR GCA 90 bp | TTAGTTGGAACAGCCAGTCAAGTAGTTGACCCAAGCATTATAGCAGAAGGACCAAGAGTTGTATCTGCTTaGTCTCTTCCTAGCTGGCCA | + |
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Preference number: 4 (lower is better) Translates to: LVGTASQVVDPSIIAEGPRVVSA*SLPSWP Trigger: TGGCCAGCTAGGAAGAGAGCAAGCAGATACAACTCT...TGGTCCTTCTGCTATAATGCTTGGGTCAACTACTTGACTGGCTGTTCCAACTAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000546741.2 |
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| CDS-3UTR TCA 90 bp | TCAGAGGATAAGAAAGAATATCTAATATGCCTCCTGTGTCTCCTACGCAGGGGAGTCCTACTGAATTTTTaGGATCTACCTCCAGGAAGC | + |
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Preference number: 4 (lower is better) Translates to: SEDKKEYLICLLCLLRRGVLLNF*DLPPGS Trigger: GCTTCCTGGAGGTAGATCTCAAAAATTCAGTAGGAC...TCCCCTGCGTAGGAGACACAGGAGGCATATTAGATATTCTTTCTTATCCTCTGA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000546741.2 |
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| CDS-3UTR TCA 90 bp | TCAGAGGATAAGAAAGAATATCTAATATGCCTCCTGTGTCTCCTACGCAGGGGAAGCCAGTCAAGTAGTTaGCCCAAGCATTATAGCAGA | + |
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Preference number: 4 (lower is better) Translates to: SEDKKEYLICLLCLLRRGSQSSS*PKHYSR Trigger: TCTGCTATAATGCTTGGGTCAACTACTTGACTGGCT...TCCCCTGCGTAGGAGACACAGGAGGCATATTAGATATTCTTTCTTATCCTCTGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000546741.2 |
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| CDS-3UTR CCA 90 bp | TTAGTTGGAACAGCCAGTCAAGTAGTTGACCCAAGCATTATAGCAGAAGGACCAGCTTTGTTCCTTAGTTaGAACAGCCAGTCAAGTAGT | + |
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Preference number: 4 (lower is better) Translates to: LVGTASQVVDPSIIAEGPALFLS*NSQSSS Trigger: ACTACTTGACTGGCTGTTCCAACTAAGGAACAAAGC...TGGTCCTTCTGCTATAATGCTTGGGTCAACTACTTGACTGGCTGTTCCAACTAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000546741.2 |
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| CDS-3UTR TCA 90 bp | GTGTATTTCAGCTTACTGGAAAGCTGCTGTTGCAATCAAAATATTTCAAACGCTGCACAGCGCCCGGCATaGAGAACATACTCATTTGAT | + |
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Preference number: 4 (lower is better) Translates to: VYFSLLESCCCNQNISNAAQRPA*RTYSFD Trigger: ATCAAATGAGTATGTTCTTCATGCCGGGCGCTGTGC...AGCGTTTGAAATATTTTGATTGCAACAGCAGCTTTCCAGTAAGCTGAAATACAC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000546741.2 |
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| CDS-3UTR GCA 90 bp | TTAGTTGGAACAGCCAGTCAAGTAGTTGACCCAAGCATTATAGCAGAAGGACCAAAAGAATATCTAATATaGCTCCTGTGTCTCCTACGC | + |
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Preference number: 4 (lower is better) Translates to: LVGTASQVVDPSIIAEGPKEYLI*LLCLLR Trigger: GCGTAGGAGACACAGGAGGCATATTAGATATTCTTT...TGGTCCTTCTGCTATAATGCTTGGGTCAACTACTTGACTGGCTGTTCCAACTAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000546741.2 |
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| CDS-3UTR GCA 90 bp | TCAGAGGATAAGAAAGAATATCTAATATGCCTCCTGTGTCTCCTACGCAGGGGATACTTCTGTGTAGGCTaGAGAGTGTATTTCAGCTTA | + |
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Preference number: 4 (lower is better) Translates to: SEDKKEYLICLLCLLRRGYFCVG*RVYFSL Trigger: TAAGCTGAAATACACTCTGCAGCCTACACAGAAGTA...TCCCCTGCGTAGGAGACACAGGAGGCATATTAGATATTCTTTCTTATCCTCTGA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000546741.2 |
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| CDS-3UTR TCA 90 bp | TCAGAGGATAAGAAAGAATATCTAATATGCCTCCTGTGTCTCCTACGCAGGGGAATTTCCAACCATTGCTaGCAGACACATACTTCATAT | + |
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Preference number: 4 (lower is better) Translates to: SEDKKEYLICLLCLLRRGISNHC*QTHTSY Trigger: ATATGAAGTATGTGTCTGTCAGCAATGGTTGGAAAT...TCCCCTGCGTAGGAGACACAGGAGGCATATTAGATATTCTTTCTTATCCTCTGA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000546741.2 |
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| CDS-3UTR CCA 90 bp | GTGTATTTCAGCTTACTGGAAAGCTGCTGTTGCAATCAAAATATTTCAAACGCTTGCTCTCTTCCTAGCTaGCCATTCTCAGAGGATAAG | + |
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Preference number: 4 (lower is better) Translates to: VYFSLLESCCCNQNISNACSLPS*PFSEDK Trigger: CTTATCCTCTGAGAATGGCCAGCTAGGAAGAGAGCA...AGCGTTTGAAATATTTTGATTGCAACAGCAGCTTTCCAGTAAGCTGAAATACAC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000546741.2 |
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| CDS-3UTR GCA 90 bp | TCAGAGGATAAGAAAGAATATCTAATATGCCTCCTGTGTCTCCTACGCAGGGGAAGCTTACTGGAAAGCTaGTGTTGCAATCAAAATATT | + |
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Preference number: 4 (lower is better) Translates to: SEDKKEYLICLLCLLRRGSLLES*CCNQNI Trigger: AATATTTTGATTGCAACAGCAGCTTTCCAGTAAGCT...TCCCCTGCGTAGGAGACACAGGAGGCATATTAGATATTCTTTCTTATCCTCTGA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000546741.2 |
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| CDS-3UTR CCA 90 bp | TCAGAGGATAAGAAAGAATATCTAATATGCCTCCTGTGTCTCCTACGCAGGGGATATTTTTCTAGCGGTTaGCTTCCTTCTTCAAACTTT | + |
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Preference number: 4 (lower is better) Translates to: SEDKKEYLICLLCLLRRGYFSSG*LPSSNF Trigger: AAAGTTTGAAGAAGGAAGCCAACCGCTAGAAAAATA...TCCCCTGCGTAGGAGACACAGGAGGCATATTAGATATTCTTTCTTATCCTCTGA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000546741.2 |
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| CDS-3UTR TCA 90 bp | GTGTATTTCAGCTTACTGGAAAGCTGCTGTTGCAATCAAAATATTTCAAACGCTCCTTATCTCTCTGTCTaGTTTGTACTTCTGTGTAGG | + |
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Preference number: 4 (lower is better) Translates to: VYFSLLESCCCNQNISNAPYLSV*FVLLCR Trigger: CCTACACAGAAGTACAAATCAGACAGAGAGATAAGG...AGCGTTTGAAATATTTTGATTGCAACAGCAGCTTTCCAGTAAGCTGAAATACAC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000546741.2 |
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| CDS-3UTR GCA 90 bp | GTGTATTTCAGCTTACTGGAAAGCTGCTGTTGCAATCAAAATATTTCAAACGCTGTAGGTGTTGTTTGCTaGCTTATCTCTCTGTCTGAT | + |
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Preference number: 4 (lower is better) Translates to: VYFSLLESCCCNQNISNAVGVVC*LISLSD Trigger: ATCAGACAGAGAGATAAGGCAGCAAACAACACCTAC...AGCGTTTGAAATATTTTGATTGCAACAGCAGCTTTCCAGTAAGCTGAAATACAC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000546741.2 |
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| CDS-3UTR TCA 90 bp | GTGTATTTCAGCTTACTGGAAAGCTGCTGTTGCAATCAAAATATTTCAAACGCTTCATTTGATGCTTGCTaGATTCATCACACAGGTGAT | + |
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Preference number: 4 (lower is better) Translates to: VYFSLLESCCCNQNISNASFDAC*IHHTGD Trigger: ATCACCTGTGTGATGAATTCAGCAAGCATCAAATGA...AGCGTTTGAAATATTTTGATTGCAACAGCAGCTTTCCAGTAAGCTGAAATACAC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000546741.2 |
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| CDS-3UTR TCA 90 bp | GTGTATTTCAGCTTACTGGAAAGCTGCTGTTGCAATCAAAATATTTCAAACGCTTATGTCCAGTCCTACTaGATTTTTGAGATCTACCTC | + |
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Preference number: 4 (lower is better) Translates to: VYFSLLESCCCNQNISNAYVQSY*IFEIYL Trigger: GAGGTAGATCTCAAAAATTCAGTAGGACTGGACATA...AGCGTTTGAAATATTTTGATTGCAACAGCAGCTTTCCAGTAAGCTGAAATACAC 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000546741.2 |
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| CDS-3UTR CCA 90 bp | GTGTATTTCAGCTTACTGGAAAGCTGCTGTTGCAATCAAAATATTTCAAACGCTTGTATTTCAGCTTACTaGAAAGCTGCTGTTGCAATC | + |
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Preference number: 4 (lower is better) Translates to: VYFSLLESCCCNQNISNACISAY*KAAVAI Trigger: GATTGCAACAGCAGCTTTCCAGTAAGCTGAAATACA...AGCGTTTGAAATATTTTGATTGCAACAGCAGCTTTCCAGTAAGCTGAAATACAC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000546741.2 |
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| 3UTR CAA 72 bp | AGATTATGTGTGGAGTTGGGATTAAATTTCCAACCATaGCTGACAGACACATACTTCATATGTGAGATGGAT | + |
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Preference number: 4 (lower is better) Translates to: RLCVELGLNFQP*LTDTYFICEMD Trigger: ATCCATCTCACATATGAAGTATGTGTCTGTCAGCAATGGTTGGAAATTTAATCCCAACTCCACACATAATCT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000546741.2 |
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| CDS-3UTR GCA 90 bp | GTGTATTTCAGCTTACTGGAAAGCTGCTGTTGCAATCAAAATATTTCAAACGCTCTGGAAAGCTGCTGTTaGAATCAAAATATTTCAAAC | + |
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Preference number: 4 (lower is better) Translates to: VYFSLLESCCCNQNISNALESCC*NQNISN Trigger: GTTTGAAATATTTTGATTGCAACAGCAGCTTTCCAG...AGCGTTTGAAATATTTTGATTGCAACAGCAGCTTTCCAGTAAGCTGAAATACAC 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000546741.2 |
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| CDS GCA 90 bp | GGATGCGGCCTGTGGGTGTTCTGTAAGACCTCTTCGCTCCTCAACTaGTACTCCGCAGCAGCCATCCATGAAGTCAGGCCACTCGGTGAC | + |
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Preference number: 5 (lower is better) Translates to: GCGLWVFCKTSSLLN*YSAAAIHEVRPLGD Trigger: GTCACCGAGTGGCCTGACTTCATGGATGGCTGCTGCGGAGTAGCAGTTGAGGAGCGAAGAGGTCTTACAGAACACCCACAGGCCGCATCC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000546769.1 |
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| CDS TCA 90 bp | AAAGAATATCTAATATGCCTCCTGTGTCTCCTACGCAGGGGAAGCTaGTTTGGTTTCAGTTTAGCACTGGACCGTTGCCCACGGAGCTGC | + |
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Preference number: 5 (lower is better) Translates to: KEYLICLLCLLRRGS*FGFSLALDRCPRSC Trigger: GCAGCTCCGTGGGCAACGGTCCAGTGCTAAACTGAAACCAAATCAGCTTCCCCTGCGTAGGAGACACAGGAGGCATATTAGATATTCTTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000546741.2 |
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| CDS-3UTR CAA 90 bp | GTGTATTTCAGCTTACTGGAAAGCTGCTGTTGCAATCAAAATATTTCAAACGCTTTTAGCACTGGACCGTaGCCCACGGAGCTGCGGCCC | + |
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Preference number: 5 (lower is better) Translates to: VYFSLLESCCCNQNISNAFSTGP*PTELRP Trigger: GGGCCGCAGCTCCGTGGGCAACGGTCCAGTGCTAAA...AGCGTTTGAAATATTTTGATTGCAACAGCAGCTTTCCAGTAAGCTGAAATACAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000546741.2 |
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| CDS-3UTR CAA 90 bp | TCAGAGGATAAGAAAGAATATCTAATATGCCTCCTGTGTCTCCTACGCAGGGGAGTAAGTAGGTGTTGTTaGCTGCCTTATCTCTCTGTC | + |
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Preference number: 5 (lower is better) Translates to: SEDKKEYLICLLCLLRRGVSRCC*LPYLSV Trigger: GACAGAGAGATAAGGCAGCAAACAACACCTACTTAC...TCCCCTGCGTAGGAGACACAGGAGGCATATTAGATATTCTTTCTTATCCTCTGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000546741.2 |
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| CDS-3UTR CAA 90 bp | TCAGAGGATAAGAAAGAATATCTAATATGCCTCCTGTGTCTCCTACGCAGGGGACCATTTATGGAAGAGTaGTATCTGCTTGCTCTCTTC | + |
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Preference number: 5 (lower is better) Translates to: SEDKKEYLICLLCLLRRGPFMEE*YLLALF Trigger: GAAGAGAGCAAGCAGATACAACTCTTCCATAAATGG...TCCCCTGCGTAGGAGACACAGGAGGCATATTAGATATTCTTTCTTATCCTCTGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000546741.2 |
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| CDS-3UTR CAA 90 bp | TCAGAGGATAAGAAAGAATATCTAATATGCCTCCTGTGTCTCCTACGCAGGGGAAAGCAAGCAGAGTCTTaGTGTTTAATTCAGCACCTG | + |
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Preference number: 5 (lower is better) Translates to: SEDKKEYLICLLCLLRRGKQAES*CLIQHL Trigger: CAGGTGCTGAATTAAACACAAAGACTCTGCTTGCTT...TCCCCTGCGTAGGAGACACAGGAGGCATATTAGATATTCTTTCTTATCCTCTGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000546741.2 |
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| CDS-3UTR CAA 90 bp | TTAGTTGGAACAGCCAGTCAAGTAGTTGACCCAAGCATTATAGCAGAAGGACCATTAAATTTCCAACCATaGCTGACAGACACATACTTC | + |
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Preference number: 5 (lower is better) Translates to: LVGTASQVVDPSIIAEGPLNFQP*LTDTYF Trigger: GAAGTATGTGTCTGTCAGCAATGGTTGGAAATTTAA...TGGTCCTTCTGCTATAATGCTTGGGTCAACTACTTGACTGGCTGTTCCAACTAA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000546741.2 |
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| CDS-3UTR CAA 90 bp | TCAGAGGATAAGAAAGAATATCTAATATGCCTCCTGTGTCTCCTACGCAGGGGAGAAGAACATACTCATTaGATGCTTGCTGAATTCATC | + |
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Preference number: 5 (lower is better) Translates to: SEDKKEYLICLLCLLRRGEEHTH*MLAEFI Trigger: GATGAATTCAGCAAGCATCAAATGAGTATGTTCTTC...TCCCCTGCGTAGGAGACACAGGAGGCATATTAGATATTCTTTCTTATCCTCTGA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000546741.2 |
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| CDS-3UTR CAA 90 bp | TTAGTTGGAACAGCCAGTCAAGTAGTTGACCCAAGCATTATAGCAGAAGGACCAAATATTTCAAACGCTTaGTTCCTTAGTTGGAACAGC | + |
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Preference number: 5 (lower is better) Translates to: LVGTASQVVDPSIIAEGPNISNA*FLSWNS Trigger: GCTGTTCCAACTAAGGAACAAAGCGTTTGAAATATT...TGGTCCTTCTGCTATAATGCTTGGGTCAACTACTTGACTGGCTGTTCCAACTAA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000546741.2 |
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| CDS GCA 72 bp | CTGTGGGTGTTCTGTAAGACCTCTTCGCTCCTCAACTaGTACTCCGCAGCAGCCATCCATGAAGTCAGGCCA | + |
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Preference number: 6 (lower is better) Translates to: LWVFCKTSSLLN*YSAAAIHEVRP Trigger: TGGCCTGACTTCATGGATGGCTGCTGCGGAGTAGCAGTTGAGGAGCGAAGAGGTCTTACAGAACACCCACAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000546769.1 |
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| CDS TCA 72 bp | CTAATATGCCTCCTGTGTCTCCTACGCAGGGGAAGCTaGTTTGGTTTCAGTTTAGCACTGGACCGTTGCCCA | + |
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Preference number: 6 (lower is better) Translates to: LICLLCLLRRGS*FGFSLALDRCP Trigger: TGGGCAACGGTCCAGTGCTAAACTGAAACCAAATCAGCTTCCCCTGCGTAGGAGACACAGGAGGCATATTAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000546741.2 |
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| CDS TCA 72 bp | TCATGGCTGTCTTTGTTACCCTATGGAGAGAGCCTTTaGGAACAAACCCAGCAGAGGAAAACCAAGCCCGGA | + |
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Preference number: 6 (lower is better) Translates to: SWLSLLPYGESL*EQTQQRKTKPG Trigger: TCCGGGCTTGGTTTTCCTCTGCTGGGTTTGTTCTCAAAGGCTCTCTCCATAGGGTAACAAAGACAGCCATGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000552612.5 |
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| CDS CAA 72 bp | TTCATGGCTGTCTTTGTTACCCTATGGAGAGAGCCTTaGAGAACAAACCCAGCAGAGGAAAACCAAGCCCGG | + |
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Preference number: 6 (lower is better) Translates to: FMAVFVTLWREP*RTNPAEENQAR Trigger: CCGGGCTTGGTTTTCCTCTGCTGGGTTTGTTCTCAAAGGCTCTCTCCATAGGGTAACAAAGACAGCCATGAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000552612.5 |
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| CDS CAA 72 bp | TTTGGAAACTGGCAAATTTGTAAAAGTGTGGCAGACTaGCCCAGTCAACAAATCATTGACTGCTTAATAGAT | + |
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Preference number: 6 (lower is better) Translates to: FGNWQICKSVAD*PSQQIIDCLID Trigger: ATCTATTAAGCAGTCAATGATTTGTTGACTGGGCAAGTCTGCCACACTTTTACAAATTTGCCAGTTTCCAAA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000546498.1 |
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