RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for PKD1L3 (Homo sapiens)

Ensembl gene IDs: ENSG00000277481

Ensembl transcript IDs: ENST00000620267.2

Found 86 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS CCA 90 bp GTGGCAGAGAGAGGCTCAACAGAAGCATCTGAGAGGCAGGAGGCCTaGATGGGAGGAAAGAGGGGCAGAGTCTCCTGTGGCTCAATCAAC +
Preference number: 5 (lower is better)
Translates to: VAERGSTEASERQEA*MGGKRGRVSCGSIN
Trigger: GTTGATTGAGCCACAGGAGACTCTGCCCCTCTTTCCTCCCATCCAGGCCTCCTGCCTCTCAGATGCTTCTGTTGAGCCTCTCTCTGCCAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000620267.2
CDS TCA 90 bp GCCAGAGCCGAAGGCTGTGCAGGTTCCCTAGAGAGGTCCAAGTGGTaGGAAGGAAGACATCCAGGCCCCCTCGTTCAAAGACTGTCTTCT +
Preference number: 5 (lower is better)
Translates to: ARAEGCAGSLERSKW*EGRHPGPLVQRLSS
Trigger: AGAAGACAGTCTTTGAACGAGGGGGCCTGGATGTCTTCCTTCTCACCACTTGGACCTCTCTAGGGAACCTGCACAGCCTTCGGCTCTGGC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000620267.2
CDS TCA 90 bp GTTGGCTGGCTGCATCTAGGAAGTCACAGGACTGGTGACCCTGGGTaGGACCCAGCGTGCCTAAGTGAGATTTCAGCCTCTGCAGAACTC +
Preference number: 5 (lower is better)
Translates to: VGWLHLGSHRTGDPG*DPACLSEISASAEL
Trigger: GAGTTCTGCAGAGGCTGAAATCTCACTTAGGCACGCTGGGTCTCACCCAGGGTCACCAGTCCTGTGACTTCCTAGATGCAGCCAGCCAAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000620267.2
CDS GCA 90 bp CAGGAGGGACTGACGCCAGAATTGTCATGCCAGAGCCGAAGGCTGTaGAGGTTCCCTAGAGAGGTCCAAGTGGTGAGAAGGAAGACATCC +
Preference number: 5 (lower is better)
Translates to: QEGLTPELSCQSRRL*RFPREVQVVRRKTS
Trigger: GGATGTCTTCCTTCTCACCACTTGGACCTCTCTAGGGAACCTGCACAGCCTTCGGCTCTGGCATGACAATTCTGGCGTCAGTCCCTCCTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000620267.2
CDS TCA 90 bp TGTCTTCTGGGGGTCACAGAGGTGATGGGGCTCACTCCGTCCCTCTaGTCCATAGAGGGTGATGACAACCTTAGCTGTTGTAGCAGCGCT +
Preference number: 5 (lower is better)
Translates to: CLLGVTEVMGLTPSL*SIEGDDNLSCCSSA
Trigger: AGCGCTGCTACAACAGCTAAGGTTGTCATCACCCTCTATGGATCAGAGGGACGGAGTGAGCCCCATCACCTCTGTGACCCCCAGAAGACA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000620267.2
CDS GCA 90 bp GAGCACCCTCCTGCCTCTCACTCAGCACAGCTGTTATATAGTAGGTaGCAATCCCGTGCTGCAGATGCTCTGGATTCAGCACCCACGTGT +
Preference number: 5 (lower is better)
Translates to: EHPPASHSAQLLYSR*QSRAADALDSAPTC
Trigger: ACACGTGGGTGCTGAATCCAGAGCATCTGCAGCACGGGATTGGCACCTACTATATAACAGCTGTGCTGAGTGAGAGGCAGGAGGGTGCTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000620267.2
CDS GCA 90 bp ATTACCTGGCTGACATACCAGGAGGGACTGACGCCAGAATTGTCATaGCAGAGCCGAAGGCTGTGCAGGTTCCCTAGAGAGGTCCAAGTG +
Preference number: 5 (lower is better)
Translates to: ITWLTYQEGLTPELS*QSRRLCRFPREVQV
Trigger: CACTTGGACCTCTCTAGGGAACCTGCACAGCCTTCGGCTCTGGCATGACAATTCTGGCGTCAGTCCCTCCTGGTATGTCAGCCAGGTAAT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000620267.2
CDS CCA 90 bp GATCCGAATGAAGTTTCTGGACAGGTAGGTGCAGCTGAGGGGCTTTaGGGGCCCGTTGGCTGCAACGTCTGCTGGGTATTTGTTGTCTTG +
Preference number: 5 (lower is better)
Translates to: DPNEVSGQVGAAEGL*GPVGCNVCWVFVVL
Trigger: CAAGACAACAAATACCCAGCAGACGTTGCAGCCAACGGGCCCCCAAAGCCCCTCAGCTGCACCTACCTGTCCAGAAACTTCATTCGGATC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000620267.2
CDS CCA 90 bp GTGACAGACACGGGCATGGTGAGCTGTGTTATCACAGGGAGAGGCTaGCTGCTGGGTTCAGATGCGGCTGATGTTACCTGTGATGTGATA +
Preference number: 5 (lower is better)
Translates to: VTDTGMVSCVITGRG*LLGSDAADVTCDVI
Trigger: TATCACATCACAGGTAACATCAGCCGCATCTGAACCCAGCAGCCAGCCTCTCCCTGTGATAACACAGCTCACCATGCCCGTGTCTGTCAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000620267.2
CDS CCA 90 bp ACGGTCCTGGGCACGACAAAGAAGTCGCTGGCAAAGAAGGTCAGGTaGTTACAGAGACACTGTGTCCTCAGAATTGTGCTCTGTGGCCCA +
Preference number: 5 (lower is better)
Translates to: TVLGTTKKSLAKKVR*LQRHCVLRIVLCGP
Trigger: TGGGCCACAGAGCACAATTCTGAGGACACAGTGTCTCTGTAACCACCTGACCTTCTTTGCCAGCGACTTCTTTGTCGTGCCCAGGACCGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000620267.2
CDS TCA 90 bp CATCAGTGGGAATCAGCACCATGGGCCTGGGTGAACAGATGTAACTaGACCTCCTTAGATGAAGTCCAGGGAATAGGCTCTTGGGACGCC +
Preference number: 5 (lower is better)
Translates to: HQWESAPWAWVNRCN*TSLDEVQGIGSWDA
Trigger: GGCGTCCCAAGAGCCTATTCCCTGGACTTCATCTAAGGAGGTTCAGTTACATCTGTTCACCCAGGCCCATGGTGCTGATTCCCACTGATG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000620267.2
CDS CCA 90 bp AGCCGCCCTATGACAAGATTGATTGGGAAGAGGATGACAGCAGTATaGATGCTGACCAGCAGTTCAGACCAGGCCACAGCAAATGGACGC +
Preference number: 5 (lower is better)
Translates to: SRPMTRLIGKRMTAV*MLTSSSDQATANGR
Trigger: GCGTCCATTTGCTGTGGCCTGGTCTGAACTGCTGGTCAGCATCCATACTGCTGTCATCCTCTTCCCAATCAATCTTGTCATAGGGCGGCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000620267.2
CDS GCA 90 bp TCTTCCTTTGGGCTTGAAGTTGTTTCTGCCAGAGATTGCCCAGCATaGGTGACAGACACGGGCATGGTGAGCTGTGTTATCACAGGGAGA +
Preference number: 5 (lower is better)
Translates to: SSFGLEVVSARDCPA*VTDTGMVSCVITGR
Trigger: TCTCCCTGTGATAACACAGCTCACCATGCCCGTGTCTGTCACGCATGCTGGGCAATCTCTGGCAGAAACAACTTCAAGCCCAAAGGAAGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000620267.2
CDS GCA 90 bp AACCGGGAAGCCCACAAGGTGAGTCGCAGCAGAGTTCACTTTTACTaGCTCATAGAAGCTGATGAATCTGTCCTGGTCATCGCGGTATCG +
Preference number: 5 (lower is better)
Translates to: NREAHKVSRSRVHFY*LIEADESVLVIAVS
Trigger: CGATACCGCGATGACCAGGACAGATTCATCAGCTTCTATGAGGCAGTAAAAGTGAACTCTGCTGCGACTCACCTTGTGGGCTTCCCGGTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000620267.2
CDS TCA 90 bp GCAGTGACACCCCAACAGGATTGTTGGTCACGCGAAGGAACAGTTTaGTCGTGTCTTCAACATTCACGGTCCTGGGCACGACAAAGAAGT +
Preference number: 5 (lower is better)
Translates to: AVTPQQDCWSREGTV*SCLQHSRSWARQRS
Trigger: ACTTCTTTGTCGTGCCCAGGACCGTGAATGTTGAAGACACGATCAAACTGTTCCTTCGCGTGACCAACAATCCTGTTGGGGTGTCACTGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000620267.2
CDS CCA 90 bp TCGTGTCTTCAACATTCACGGTCCTGGGCACGACAAAGAAGTCGCTaGCAAAGAAGGTCAGGTGGTTACAGAGACACTGTGTCCTCAGAA +
Preference number: 5 (lower is better)
Translates to: SCLQHSRSWARQRSR*QRRSGGYRDTVSSE
Trigger: TTCTGAGGACACAGTGTCTCTGTAACCACCTGACCTTCTTTGCCAGCGACTTCTTTGTCGTGCCCAGGACCGTGAATGTTGAAGACACGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000620267.2
CDS TCA 90 bp TCCAGCCAACTTCCTTCTCCAGCTTTGGTGACATTGTTGAGGGAATaGAAGGGGCAGACAGTTGGAGGAACTTTGAAGCCCAGACTGTTG +
Preference number: 5 (lower is better)
Translates to: SSQLPSPALVTLLRE*KGQTVGGTLKPRLL
Trigger: CAACAGTCTGGGCTTCAAAGTTCCTCCAACTGTCTGCCCCTTTCATTCCCTCAACAATGTCACCAAAGCTGGAGAAGGAAGTTGGCTGGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000620267.2
CDS CCA 90 bp AGAGTAGCATTGGCAGAGGTCAAAGTCACTGAAGACTCGGGAGACTaGTTCTGCTCTAGAAATGCTTCCCCGATATTCCCAAACTCCACC +
Preference number: 5 (lower is better)
Translates to: RVALAEVKVTEDSGD*FCSRNASPIFPNST
Trigger: GGTGGAGTTTGGGAATATCGGGGAAGCATTTCTAGAGCAGAACCAGTCTCCCGAGTCTTCAGTGACTTTGACCTCTGCCAATGCTACTCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000620267.2
CDS CCA 90 bp CACAGCTGTTATATAGTAGGTGCCAATCCCGTGCTGCAGATGCTCTaGATTCAGCACCCACGTGTACTCCTCATCTTTTTGCCACACCTT +
Preference number: 5 (lower is better)
Translates to: HSCYIVGANPVLQML*IQHPRVLLIFLPHL
Trigger: AAGGTGTGGCAAAAAGATGAGGAGTACACGTGGGTGCTGAATCCAGAGCATCTGCAGCACGGGATTGGCACCTACTATATAACAGCTGTG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000620267.2
CDS CCA 90 bp ATGACCATGTTGCAGAGTAGCAGTGTCATGCAGCAAGACAGCCGTTaGACCCTTGTAAACTGGTTCCAGGGATGCCGAGTTGCAATTGAA +
Preference number: 5 (lower is better)
Translates to: MTMLQSSSVMQQDSR*TLVNWFQGCRVAIE
Trigger: TTCAATTGCAACTCGGCATCCCTGGAACCAGTTTACAAGGGTCCAACGGCTGTCTTGCTGCATGACACTGCTACTCTGCAACATGGTCAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000620267.2
CDS TCA 90 bp CCGTTGGACCCTTGTAAACTGGTTCCAGGGATGCCGAGTTGCAATTaGAAGCCACAGATAATCCTGGGTGAACTTTTCCACAATCATGGA +
Preference number: 5 (lower is better)
Translates to: PLDPCKLVPGMPSCN*KPQIILGELFHNHG
Trigger: TCCATGATTGTGGAAAAGTTCACCCAGGATTATCTGTGGCTTTCAATTGCAACTCGGCATCCCTGGAACCAGTTTACAAGGGTCCAACGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000620267.2
CDS TCA 90 bp ATCAAGGATTTCTCCAAGGAAGTGACGTTCACTGTGATTGTAAGCTaGTGTGTGCTCATGTTGAGGCTGGTGGGATGGGTTTCCAAGCTA +
Preference number: 5 (lower is better)
Translates to: IKDFSKEVTFTVIVS*CVLMLRLVGWVSKL
Trigger: TAGCTTGGAAACCCATCCCACCAGCCTCAACATGAGCACACATCAGCTTACAATCACAGTGAACGTCACTTCCTTGGAGAAATCCTTGAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000620267.2
CDS TCA 90 bp TCCATGGCGGCTGCTCACACTTGGAGAGTAGGTATGTATTTCTCCTaGGCAGGAATCTCACAGTTTCCTTTAATTCCTCAACTACCATTG +
Preference number: 5 (lower is better)
Translates to: SMAAAHTWRVGMYFS*AGISQFPLIPQLPL
Trigger: CAATGGTAGTTGAGGAATTAAAGGAAACTGTGAGATTCCTGCTCAGGAGAAATACATACCTACTCTCCAAGTGTGAGCAGCCGCCATGGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000620267.2
CDS GCA 90 bp AAAAGTTTCACCAGCTTAGTAATGTCCCAAGAACTCCATGGCGGCTaGTCACACTTGGAGAGTAGGTATGTATTTCTCCTGAGCAGGAAT +
Preference number: 5 (lower is better)
Translates to: KSFTSLVMSQELHGG*SHLESRYVFLLSRN
Trigger: ATTCCTGCTCAGGAGAAATACATACCTACTCTCCAAGTGTGAGCAGCCGCCATGGAGTTCTTGGGACATTACTAAGCTGGTGAAACTTTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000620267.2
CDS TCA 90 bp TTTGCCCAATCCACCACTTCTTTCCTTCTTCCAGATAGTCCCGGATaGGATCTTGAACTTCCTTGTTCCAAATATGAGCTAGGAATCCTC +
Preference number: 5 (lower is better)
Translates to: FAQSTTSFLLPDSPG*DLELPCSKYELGIL
Trigger: GAGGATTCCTAGCTCATATTTGGAACAAGGAAGTTCAAGATCTCATCCGGGACTATCTGGAAGAAGGAAAGAAGTGGTGGATTGGGCAAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000620267.2
CDS TCA 90 bp ATGACTTGTGAGATGATAGACCAGACACAGCCCTTCTTTGACATCTaGAGGGAAGTGAAGCTTTCCAGTCTCAAAGAGGTGAAGAAAGCA +
Preference number: 5 (lower is better)
Translates to: MTCEMIDQTQPFFDI*REVKLSSLKEVKKA
Trigger: TGCTTTCTTCACCTCTTTGAGACTGGAAAGCTTCACTTCCCTTCAGATGTCAAAGAAGGGCTGTGTCTGGTCTATCATCTCACAAGTCAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000620267.2
CDS GCA 90 bp TGTCTTCCAGATAGCTTGGTGGAGGTAAAATCTATTGGAGTTCTTTaGAGAGTAGATTGCAGTCATCAACAGGGTAAGGAAGAGGATTTG +
Preference number: 5 (lower is better)
Translates to: CLPDSLVEVKSIGVL*RVDCSHQQGKEEDL
Trigger: CAAATCCTCTTCCTTACCCTGTTGATGACTGCAATCTACTCTGCAAAGAACTCCAATAGATTTTACCTCCACCAAGCTATCTGGAAGACA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000620267.2
CDS CAA 90 bp CCCGCAGCCTGGGGCTATGACGCAGCAGGTTCCATAACTGAACAGTaGCCAGGAGAACCGGGAAGCCCACAAGGTGAGTCGCAGCAGAGT +
Preference number: 6 (lower is better)
Translates to: PAAWGYDAAGSITEQ*PGEPGSPQGESQQS
Trigger: ACTCTGCTGCGACTCACCTTGTGGGCTTCCCGGTTCTCCTGGCAACTGTTCAGTTATGGAACCTGCTGCGTCATAGCCCCAGGCTGCGGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000620267.2
CDS CCA 72 bp GGCCTGGATGGGAGGAAAGAGGGGCAGAGTCTCCTGTaGCTCAATCAACGGGAAGAGCCGCCCTATGACAAG +
Preference number: 6 (lower is better)
Translates to: GLDGRKEGQSLL*LNQREEPPYDK
Trigger: CTTGTCATAGGGCGGCTCTTCCCGTTGATTGAGCCACAGGAGACTCTGCCCCTCTTTCCTCCCATCCAGGCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000620267.2
CDS CCA 72 bp GAAGTTTCTGGACAGGTAGGTGCAGCTGAGGGGCTTTaGGGGCCCGTTGGCTGCAACGTCTGCTGGGTATTT +
Preference number: 6 (lower is better)
Translates to: EVSGQVGAAEGL*GPVGCNVCWVF
Trigger: AAATACCCAGCAGACGTTGCAGCCAACGGGCCCCCAAAGCCCCTCAGCTGCACCTACCTGTCCAGAAACTTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000620267.2
CDS CAA 72 bp ACCTGGCTGACATACCAGGAGGGACTGACGCCAGAATaGTCATGCCAGAGCCGAAGGCTGTGCAGGTTCCCT +
Preference number: 6 (lower is better)
Translates to: TWLTYQEGLTPE*SCQSRRLCRFP
Trigger: AGGGAACCTGCACAGCCTTCGGCTCTGGCATGACAATTCTGGCGTCAGTCCCTCCTGGTATGTCAGCCAGGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000620267.2
CDS GCA 72 bp TCAGGTGGTTACAGAGACACTGTGTCCTCAGAATTGTaGTCTGTGGCCCAACTTGGCATCCGGCGCTGCTCC +
Preference number: 6 (lower is better)
Translates to: SGGYRDTVSSEL*SVAQLGIRRCS
Trigger: GGAGCAGCGCCGGATGCCAAGTTGGGCCACAGAGCACAATTCTGAGGACACAGTGTCTCTGTAACCACCTGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000620267.2
CDS GCA 72 bp CTGACGCCAGAATTGTCATGCCAGAGCCGAAGGCTGTaGAGGTTCCCTAGAGAGGTCCAAGTGGTGAGAAGG +
Preference number: 6 (lower is better)
Translates to: LTPELSCQSRRL*RFPREVQVVRR
Trigger: CCTTCTCACCACTTGGACCTCTCTAGGGAACCTGCACAGCCTTCGGCTCTGGCATGACAATTCTGGCGTCAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000620267.2
CDS GCA 72 bp CTGACATACCAGGAGGGACTGACGCCAGAATTGTCATaGCAGAGCCGAAGGCTGTGCAGGTTCCCTAGAGAG +
Preference number: 6 (lower is better)
Translates to: LTYQEGLTPELS*QSRRLCRFPRE
Trigger: CTCTCTAGGGAACCTGCACAGCCTTCGGCTCTGGCATGACAATTCTGGCGTCAGTCCCTCCTGGTATGTCAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000620267.2
CDS CAA 72 bp TGGGGCTATGACGCAGCAGGTTCCATAACTGAACAGTaGCCAGGAGAACCGGGAAGCCCACAAGGTGAGTCG +
Preference number: 6 (lower is better)
Translates to: WGYDAAGSITEQ*PGEPGSPQGES
Trigger: CGACTCACCTTGTGGGCTTCCCGGTTCTCCTGGCAACTGTTCAGTTATGGAACCTGCTGCGTCATAGCCCCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000620267.2
CDS TCA 72 bp GGGGTCACAGAGGTGATGGGGCTCACTCCGTCCCTCTaGTCCATAGAGGGTGATGACAACCTTAGCTGTTGT +
Preference number: 6 (lower is better)
Translates to: GVTEVMGLTPSL*SIEGDDNLSCC
Trigger: ACAACAGCTAAGGTTGTCATCACCCTCTATGGATCAGAGGGACGGAGTGAGCCCCATCACCTCTGTGACCCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000620267.2
CDS TCA 72 bp GAAGGCTGTGCAGGTTCCCTAGAGAGGTCCAAGTGGTaGGAAGGAAGACATCCAGGCCCCCTCGTTCAAAGA +
Preference number: 6 (lower is better)
Translates to: EGCAGSLERSKW*EGRHPGPLVQR
Trigger: TCTTTGAACGAGGGGGCCTGGATGTCTTCCTTCTCACCACTTGGACCTCTCTAGGGAACCTGCACAGCCTTC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000620267.2
CDS TCA 72 bp CTGCATCTAGGAAGTCACAGGACTGGTGACCCTGGGTaGGACCCAGCGTGCCTAAGTGAGATTTCAGCCTCT +
Preference number: 6 (lower is better)
Translates to: LHLGSHRTGDPG*DPACLSEISAS
Trigger: AGAGGCTGAAATCTCACTTAGGCACGCTGGGTCTCACCCAGGGTCACCAGTCCTGTGACTTCCTAGATGCAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000620267.2
CDS GCA 72 bp GGGCTTGAAGTTGTTTCTGCCAGAGATTGCCCAGCATaGGTGACAGACACGGGCATGGTGAGCTGTGTTATC +
Preference number: 6 (lower is better)
Translates to: GLEVVSARDCPA*VTDTGMVSCVI
Trigger: GATAACACAGCTCACCATGCCCGTGTCTGTCACGCATGCTGGGCAATCTCTGGCAGAAACAACTTCAAGCCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000620267.2
CDS GCA 72 bp TCTTCCTTTGGGCTTGAAGTTGTTTCTGCCAGAGATTaGCCAGCATGCGTGACAGACACGGGCATGGTGAGC +
Preference number: 6 (lower is better)
Translates to: SSFGLEVVSARD*PACVTDTGMVS
Trigger: GCTCACCATGCCCGTGTCTGTCACGCATGCTGGGCAATCTCTGGCAGAAACAACTTCAAGCCCAAAGGAAGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000620267.2
CDS TCA 72 bp CCCCAACAGGATTGTTGGTCACGCGAAGGAACAGTTTaGTCGTGTCTTCAACATTCACGGTCCTGGGCACGA +
Preference number: 6 (lower is better)
Translates to: PQQDCWSREGTV*SCLQHSRSWAR
Trigger: TCGTGCCCAGGACCGTGAATGTTGAAGACACGATCAAACTGTTCCTTCGCGTGACCAACAATCCTGTTGGGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000620267.2
CDS GCA 72 bp CCTGCCTCTCACTCAGCACAGCTGTTATATAGTAGGTaGCAATCCCGTGCTGCAGATGCTCTGGATTCAGCA +
Preference number: 6 (lower is better)
Translates to: PASHSAQLLYSR*QSRAADALDSA
Trigger: TGCTGAATCCAGAGCATCTGCAGCACGGGATTGGCACCTACTATATAACAGCTGTGCTGAGTGAGAGGCAGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000620267.2
CDS CCA 72 bp CAACATTCACGGTCCTGGGCACGACAAAGAAGTCGCTaGCAAAGAAGGTCAGGTGGTTACAGAGACACTGTG +
Preference number: 6 (lower is better)
Translates to: QHSRSWARQRSR*QRRSGGYRDTV
Trigger: CACAGTGTCTCTGTAACCACCTGACCTTCTTTGCCAGCGACTTCTTTGTCGTGCCCAGGACCGTGAATGTTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000620267.2
CDS CCA 72 bp GTCATGCAGCAAGACAGCCGTTGGACCCTTGTAAACTaGTTCCAGGGATGCCGAGTTGCAATTGAAAGCCAC +
Preference number: 6 (lower is better)
Translates to: VMQQDSRWTLVN*FQGCRVAIESH
Trigger: GTGGCTTTCAATTGCAACTCGGCATCCCTGGAACCAGTTTACAAGGGTCCAACGGCTGTCTTGCTGCATGAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000620267.2
CDS CCA 72 bp TTGCAGAGTAGCAGTGTCATGCAGCAAGACAGCCGTTaGACCCTTGTAAACTGGTTCCAGGGATGCCGAGTT +
Preference number: 6 (lower is better)
Translates to: LQSSSVMQQDSR*TLVNWFQGCRV
Trigger: AACTCGGCATCCCTGGAACCAGTTTACAAGGGTCCAACGGCTGTCTTGCTGCATGACACTGCTACTCTGCAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000620267.2
CDS CAA 72 bp ACCCCAACAGGATTGTTGGTCACGCGAAGGAACAGTTaGATCGTGTCTTCAACATTCACGGTCCTGGGCACG +
Preference number: 6 (lower is better)
Translates to: TPTGLLVTRRNS*IVSSTFTVLGT
Trigger: CGTGCCCAGGACCGTGAATGTTGAAGACACGATCAAACTGTTCCTTCGCGTGACCAACAATCCTGTTGGGGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000620267.2
CDS CAA 90 bp GTCTCCTGTGGCTCAATCAACGGGAAGAGCCGCCCTATGACAAGATaGATTGGGAAGAGGATGACAGCAGTATGGATGCTGACCAGCAGT +
Preference number: 6 (lower is better)
Translates to: VSCGSINGKSRPMTR*IGKRMTAVWMLTSS
Trigger: ACTGCTGGTCAGCATCCATACTGCTGTCATCCTCTTCCCAATCAATCTTGTCATAGGGCGGCTCTTCCCGTTGATTGAGCCACAGGAGAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000620267.2
CDS CAA 90 bp AGCAGTGACACCCCAACAGGATTGTTGGTCACGCGAAGGAACAGTTaGATCGTGTCTTCAACATTCACGGTCCTGGGCACGACAAAGAAG +
Preference number: 6 (lower is better)
Translates to: SSDTPTGLLVTRRNS*IVSSTFTVLGTTKK
Trigger: CTTCTTTGTCGTGCCCAGGACCGTGAATGTTGAAGACACGATCAAACTGTTCCTTCGCGTGACCAACAATCCTGTTGGGGTGTCACTGCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000620267.2
CDS CCA 72 bp GGCACGACAAAGAAGTCGCTGGCAAAGAAGGTCAGGTaGTTACAGAGACACTGTGTCCTCAGAATTGTGCTC +
Preference number: 6 (lower is better)
Translates to: GTTKKSLAKKVR*LQRHCVLRIVL
Trigger: GAGCACAATTCTGAGGACACAGTGTCTCTGTAACCACCTGACCTTCTTTGCCAGCGACTTCTTTGTCGTGCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000620267.2
CDS CAA 72 bp AAAAGGCTGGCCAGCAGTGACACCCCAACAGGATTGTaGGTCACGCGAAGGAACAGTTTGATCGTGTCTTCA +
Preference number: 6 (lower is better)
Translates to: KRLASSDTPTGL*VTRRNSLIVSS
Trigger: TGAAGACACGATCAAACTGTTCCTTCGCGTGACCAACAATCCTGTTGGGGTGTCACTGCTGGCCAGCCTTTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000620267.2
CDS CAA 72 bp GGCTCAATCAACGGGAAGAGCCGCCCTATGACAAGATaGATTGGGAAGAGGATGACAGCAGTATGGATGCTG +
Preference number: 6 (lower is better)
Translates to: GSINGKSRPMTR*IGKRMTAVWML
Trigger: CAGCATCCATACTGCTGTCATCCTCTTCCCAATCAATCTTGTCATAGGGCGGCTCTTCCCGTTGATTGAGCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000620267.2
CDS TCA 72 bp GAATCAGCACCATGGGCCTGGGTGAACAGATGTAACTaGACCTCCTTAGATGAAGTCCAGGGAATAGGCTCT +
Preference number: 6 (lower is better)
Translates to: ESAPWAWVNRCN*TSLDEVQGIGS
Trigger: AGAGCCTATTCCCTGGACTTCATCTAAGGAGGTTCAGTTACATCTGTTCACCCAGGCCCATGGTGCTGATTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000620267.2
CDS GCA 72 bp GAGGTCAAAGTCACTGAAGACTCGGGAGACTGGTTCTaGTCTAGAAATGCTTCCCCGATATTCCCAAACTCC +
Preference number: 6 (lower is better)
Translates to: EVKVTEDSGDWF*SRNASPIFPNS
Trigger: GGAGTTTGGGAATATCGGGGAAGCATTTCTAGAGCAGAACCAGTCTCCCGAGTCTTCAGTGACTTTGACCTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000620267.2
CDS GCA 72 bp TTGTACCCCACATTTGCAATGACTGGGCTCCAGGACTaGATTCTTACCTCTGTAATCCCCATACAGGCTAGG +
Preference number: 6 (lower is better)
Translates to: LYPTFAMTGLQD*ILTSVIPIQAR
Trigger: CCTAGCCTGTATGGGGATTACAGAGGTAAGAATGCAGTCCTGGAGCCCAGTCATTGCAAATGTGGGGTACAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000620267.2
CDS CCA 72 bp TTGGCAGAGGTCAAAGTCACTGAAGACTCGGGAGACTaGTTCTGCTCTAGAAATGCTTCCCCGATATTCCCA +
Preference number: 6 (lower is better)
Translates to: LAEVKVTEDSGD*FCSRNASPIFP
Trigger: TGGGAATATCGGGGAAGCATTTCTAGAGCAGAACCAGTCTCCCGAGTCTTCAGTGACTTTGACCTCTGCCAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000620267.2
CDS CCA 72 bp ATGACAAGATTGATTGGGAAGAGGATGACAGCAGTATaGATGCTGACCAGCAGTTCAGACCAGGCCACAGCA +
Preference number: 6 (lower is better)
Translates to: MTRLIGKRMTAV*MLTSSSDQATA
Trigger: TGCTGTGGCCTGGTCTGAACTGCTGGTCAGCATCCATACTGCTGTCATCCTCTTCCCAATCAATCTTGTCAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000620267.2
CDS TCA 72 bp TTCTCCAAGGAAGTGACGTTCACTGTGATTGTAAGCTaGTGTGTGCTCATGTTGAGGCTGGTGGGATGGGTT +
Preference number: 6 (lower is better)
Translates to: FSKEVTFTVIVS*CVLMLRLVGWV
Trigger: AACCCATCCCACCAGCCTCAACATGAGCACACATCAGCTTACAATCACAGTGAACGTCACTTCCTTGGAGAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000620267.2
CDS GCA 72 bp AGCTTGCAAACCATGAACTGCTCTGCTGAAGTTCCCTaGTATCTCATCTATGACCTGACCAGATGCCTTCTG +
Preference number: 6 (lower is better)
Translates to: SLQTMNCSAEVP*YLIYDLTRCLL
Trigger: CAGAAGGCATCTGGTCAGGTCATAGATGAGATAGCAGGGAACTTCAGCAGAGCAGTTCATGGTTTGCAAGCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000620267.2
CDS GCA 72 bp ACCAGCTTAGTAATGTCCCAAGAACTCCATGGCGGCTaGTCACACTTGGAGAGTAGGTATGTATTTCTCCTG +
Preference number: 6 (lower is better)
Translates to: TSLVMSQELHGG*SHLESRYVFLL
Trigger: CAGGAGAAATACATACCTACTCTCCAAGTGTGAGCAGCCGCCATGGAGTTCTTGGGACATTACTAAGCTGGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000620267.2
CDS CCA 72 bp TATATAGTAGGTGCCAATCCCGTGCTGCAGATGCTCTaGATTCAGCACCCACGTGTACTCCTCATCTTTTTG +
Preference number: 6 (lower is better)
Translates to: YIVGANPVLQML*IQHPRVLLIFL
Trigger: CAAAAAGATGAGGAGTACACGTGGGTGCTGAATCCAGAGCATCTGCAGCACGGGATTGGCACCTACTATATA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000620267.2
CDS CAA 72 bp TCGATATCCGGTGTAGACCTGAATAAGGTAGTGAAATaGAGCGCTGGGGTCATTATCAGCCAGGACAGTGAC +
Preference number: 6 (lower is better)
Translates to: SISGVDLNKVVK*SAGVIISQDSD
Trigger: GTCACTGTCCTGGCTGATAATGACCCCAGCGCTCAATTTCACTACCTTATTCAGGTCTACACCGGATATCGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000620267.2
CDS CAA 72 bp GTAATGTCCCAAGAACTCCATGGCGGCTGCTCACACTaGGAGAGTAGGTATGTATTTCTCCTGAGCAGGAAT +
Preference number: 6 (lower is better)
Translates to: VMSQELHGGCSH*ESRYVFLLSRN
Trigger: ATTCCTGCTCAGGAGAAATACATACCTACTCTCCAAGTGTGAGCAGCCGCCATGGAGTTCTTGGGACATTAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000620267.2
CDS CAA 90 bp ACCAGCTTAGTAATGTCCCAAGAACTCCATGGCGGCTGCTCACACTaGGAGAGTAGGTATGTATTTCTCCTGAGCAGGAATCTCACAGTT +
Preference number: 6 (lower is better)
Translates to: TSLVMSQELHGGCSH*ESRYVFLLSRNLTV
Trigger: AACTGTGAGATTCCTGCTCAGGAGAAATACATACCTACTCTCCAAGTGTGAGCAGCCGCCATGGAGTTCTTGGGACATTACTAAGCTGGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000620267.2
CDS TCA 72 bp CCTTGTAAACTGGTTCCAGGGATGCCGAGTTGCAATTaGAAGCCACAGATAATCCTGGGTGAACTTTTCCAC +
Preference number: 6 (lower is better)
Translates to: PCKLVPGMPSCN*KPQIILGELFH
Trigger: GTGGAAAAGTTCACCCAGGATTATCTGTGGCTTTCAATTGCAACTCGGCATCCCTGGAACCAGTTTACAAGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000620267.2
CDS TCA 72 bp GAGATGATAGACCAGACACAGCCCTTCTTTGACATCTaGAGGGAAGTGAAGCTTTCCAGTCTCAAAGAGGTG +
Preference number: 6 (lower is better)
Translates to: EMIDQTQPFFDI*REVKLSSLKEV
Trigger: CACCTCTTTGAGACTGGAAAGCTTCACTTCCCTTCAGATGTCAAAGAAGGGCTGTGTCTGGTCTATCATCTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000620267.2
CDS CCA 72 bp CGTGTACTCCTCATCTTTTTGCCACACCTTATCCTTTaGAAGGGTGATGTTCAGGTGGAAGTGAGTGCAGTT +
Preference number: 6 (lower is better)
Translates to: RVLLIFLPHLIL*KGDVQVEVSAV
Trigger: AACTGCACTCACTTCCACCTGAACATCACCCTTCCAAAGGATAAGGTGTGGCAAAAAGATGAGGAGTACACG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000620267.2
CDS CAA 72 bp CAGGCCACAGCAAATGGACGCATTTGCTCATCTCTCTaGGCAGTGGTGCTGTTTATCTTCCAGAACATAACA +
Preference number: 6 (lower is better)
Translates to: QATANGRICSSL*AVVLFIFQNIT
Trigger: TGTTATGTTCTGGAAGATAAACAGCACCACTGCCAAGAGAGATGAGCAAATGCGTCCATTTGCTGTGGCCTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000620267.2
CDS CAA 90 bp TCATCTCTCTTGGCAGTGGTGCTGTTTATCTTCCAGAACATAACATaGATGACCATGTTGCAGAGTAGCAGTGTCATGCAGCAAGACAGC +
Preference number: 6 (lower is better)
Translates to: SSLLAVVLFIFQNIT*MTMLQSSSVMQQDS
Trigger: GCTGTCTTGCTGCATGACACTGCTACTCTGCAACATGGTCATCAATGTTATGTTCTGGAAGATAAACAGCACCACTGCCAAGAGAGATGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000620267.2
CDS TCA 72 bp CAGATGCCTTCTGCAATGACACTTGTAGATAAGAGGTaGAGGTATTCGGATGACCTTCTTCCTTTGGGCTTG +
Preference number: 6 (lower is better)
Translates to: QMPSAMTLVDKR*RYSDDLLPLGL
Trigger: CAAGCCCAAAGGAAGAAGGTCATCCGAATACCTTCACCTCTTATCTACAAGTGTCATTGCAGAAGGCATCTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000620267.2
CDS TCA 72 bp CAAGCTTCCTGTAGTTTGTTAAGAGCTTGCAAACCATaGACTGCTCTGCTGAAGTTCCCTGCTATCTCATCT +
Preference number: 6 (lower is better)
Translates to: QASCSLLRACKP*TALLKFPAISS
Trigger: AGATGAGATAGCAGGGAACTTCAGCAGAGCAGTTCATGGTTTGCAAGCTCTTAACAAACTACAGGAAGCTTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000620267.2
CDS TCA 72 bp TATGATTGGCCCAGGGGTAGAAATCCTGAAGAAGTTTaGTTTCCGAGAACTGGTGCGAAAATGTCTTCCAGA +
Preference number: 6 (lower is better)
Translates to: YDWPRGRNPEEV*FPRTGAKMSSR
Trigger: TCTGGAAGACATTTTCGCACCAGTTCTCGGAAATCAAACTTCTTCAGGATTTCTACCCCTGGGCCAATCATA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000620267.2
CDS CAA 72 bp CCCGTTGGCTGCAACGTCTGCTGGGTATTTGTTGTCTaGATGCTTTTTCAATGGCATTACATTTTGCCCAAT +
Preference number: 6 (lower is better)
Translates to: PVGCNVCWVFVV*MLFQWHYILPN
Trigger: ATTGGGCAAAATGTAATGCCATTGAAAAAGCATCAAGACAACAAATACCCAGCAGACGTTGCAGCCAACGGG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000620267.2
CDS CAA 90 bp TCCTCTCTGCACATGACAGTAATGCTGTGCTTCCTCAAAGCTGCATaGAAATCTGTTAAGCTGGTAACAATTATTTTGCCCATGTGGTGC +
Preference number: 6 (lower is better)
Translates to: SSLHMTVMLCFLKAA*KSVKLVTIILPMWC
Trigger: GCACCACATGGGCAAAATAATTGTTACCAGCTTAACAGATTTCAATGCAGCTTTGAGGAAGCACAGCATTACTGTCATGTGCAGAGAGGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000620267.2
CDS TCA 72 bp GCTGCTCACACTTGGAGAGTAGGTATGTATTTCTCCTaGGCAGGAATCTCACAGTTTCCTTTAATTCCTCAA +
Preference number: 6 (lower is better)
Translates to: AAHTWRVGMYFS*AGISQFPLIPQ
Trigger: TTGAGGAATTAAAGGAAACTGTGAGATTCCTGCTCAGGAGAAATACATACCTACTCTCCAAGTGTGAGCAGC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000620267.2
CDS TCA 72 bp GGATTATACTTGTGTCCAGAATGTTTCTTTTCCCAGTaGAGAACCTCCACTTCTGCTGTTTCAGCTGACAAC +
Preference number: 6 (lower is better)
Translates to: GLYLCPECFFSQ*RTSTSAVSADN
Trigger: GTTGTCAGCTGAAACAGCAGAAGTGGAGGTTCTTCACTGGGAAAAGAAACATTCTGGACACAAGTATAATCC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000620267.2
CDS CCA 72 bp TTTGGAAAATTAATTGTACCCCACATTTGCAATGACTaGGCTCCAGGACTGCATTCTTACCTCTGTAATCCC +
Preference number: 6 (lower is better)
Translates to: FGKLIVPHICND*APGLHSYLCNP
Trigger: GGGATTACAGAGGTAAGAATGCAGTCCTGGAGCCCAGTCATTGCAAATGTGGGGTACAATTAATTTTCCAAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000620267.2
CDS CAA 72 bp TTCCGAGAACTGGTGCGAAAATGTCTTCCAGATAGCTaGGTGGAGGTAAAATCTATTGGAGTTCTTTGCAGA +
Preference number: 6 (lower is better)
Translates to: FRELVRKCLPDS*VEVKSIGVLCR
Trigger: TCTGCAAAGAACTCCAATAGATTTTACCTCCACCAAGCTATCTGGAAGACATTTTCGCACCAGTTCTCGGAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000620267.2
CDS CAA 90 bp TGCTGGGTATTTGTTGTCTTGATGCTTTTTCAATGGCATTACATTTaGCCCAATCCACCACTTCTTTCCTTCTTCCAGATAGTCCCGGAT +
Preference number: 6 (lower is better)
Translates to: CWVFVVLMLFQWHYI*PNPPLLSFFQIVPD
Trigger: ATCCGGGACTATCTGGAAGAAGGAAAGAAGTGGTGGATTGGGCAAAATGTAATGCCATTGAAAAAGCATCAAGACAACAAATACCCAGCA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000620267.2
CDS GCA 72 bp GATAGCTTGGTGGAGGTAAAATCTATTGGAGTTCTTTaGAGAGTAGATTGCAGTCATCAACAGGGTAAGGAA +
Preference number: 6 (lower is better)
Translates to: DSLVEVKSIGVL*RVDCSHQQGKE
Trigger: TTCCTTACCCTGTTGATGACTGCAATCTACTCTGCAAAGAACTCCAATAGATTTTACCTCCACCAAGCTATC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000620267.2
CDS CCA 72 bp GGCTTAGAAAATCTTGGGGTTAAGGCTGTTAGTTTCTaGAGGAACTCACAAGCTTCCTGTAGTTTGTTAAGA +
Preference number: 6 (lower is better)
Translates to: GLENLGVKAVSF*RNSQASCSLLR
Trigger: TCTTAACAAACTACAGGAAGCTTGTGAGTTCCTCCAGAAACTAACAGCCTTAACCCCAAGATTTTCTAAGCC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000620267.2
CDS CAA 90 bp AAGTTTGATTTCCGAGAACTGGTGCGAAAATGTCTTCCAGATAGCTaGGTGGAGGTAAAATCTATTGGAGTTCTTTGCAGAGTAGATTGC +
Preference number: 6 (lower is better)
Translates to: KFDFRELVRKCLPDS*VEVKSIGVLCRVDC
Trigger: GCAATCTACTCTGCAAAGAACTCCAATAGATTTTACCTCCACCAAGCTATCTGGAAGACATTTTCGCACCAGTTCTCGGAAATCAAACTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000620267.2
CDS CAA 90 bp TTAGCGCTTAGTAACACACTTCCAATGCTTCCAACAATGTTTCTGTaGTCCAAATCCTTGAAGGGATTGAAAGCTAGTCCTGTTATTTGG +
Preference number: 6 (lower is better)
Translates to: LALSNTLPMLPTMFL*SKSLKGLKASPVIW
Trigger: CCAAATAACAGGACTAGCTTTCAATCCCTTCAAGGATTTGGACAACAGAAACATTGTTGGAAGCATTGGAAGTGTGTTACTAAGCGCTAA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000620267.2
CDS GCA 72 bp GAGGTAAAATCTATTGGAGTTCTTTGCAGAGTAGATTaGAGTCATCAACAGGGTAAGGAAGAGGATTTGTAC +
Preference number: 6 (lower is better)
Translates to: EVKSIGVLCRVD*SHQQGKEEDLY
Trigger: GTACAAATCCTCTTCCTTACCCTGTTGATGACTGCAATCTACTCTGCAAAGAACTCCAATAGATTTTACCTC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000620267.2
CDS CAA 72 bp CACATGACAGTAATGCTGTGCTTCCTCAAAGCTGCATaGAAATCTGTTAAGCTGGTAACAATTATTTTGCCC +
Preference number: 6 (lower is better)
Translates to: HMTVMLCFLKAA*KSVKLVTIILP
Trigger: GGGCAAAATAATTGTTACCAGCTTAACAGATTTCAATGCAGCTTTGAGGAAGCACAGCATTACTGTCATGTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000620267.2
CDS CAA 72 bp CCAATGCTTCCAACAATGTTTCTGTTGTCCAAATCCTaGAAGGGATTGAAAGCTAGTCCTGTTATTTGGACA +
Preference number: 6 (lower is better)
Translates to: PMLPTMFLLSKS*KGLKASPVIWT
Trigger: TGTCCAAATAACAGGACTAGCTTTCAATCCCTTCAAGGATTTGGACAACAGAAACATTGTTGGAAGCATTGG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000620267.2
CDS CAA 90 bp AACACACTTCCAATGCTTCCAACAATGTTTCTGTTGTCCAAATCCTaGAAGGGATTGAAAGCTAGTCCTGTTATTTGGACATTAACTCCT +
Preference number: 6 (lower is better)
Translates to: NTLPMLPTMFLLSKS*KGLKASPVIWTLTP
Trigger: AGGAGTTAATGTCCAAATAACAGGACTAGCTTTCAATCCCTTCAAGGATTTGGACAACAGAAACATTGTTGGAAGCATTGGAAGTGTGTT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000620267.2