RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for PITX3 (Homo sapiens)

Ensembl gene IDs: ENSG00000107859

Ensembl transcript IDs: ENST00000370002.8, ENST00000539804.1

Found 98 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR-3UTR GCA 90 bp GGAAGCCTGGAGAAGGCGGGATGGGCCAAGGGTGAGTTGGCCCCCGGGGAGCTGCCTCTCCTGAGCCGGTaGCCCCCAGCTGCCCAAACA +
Preference number: 2 (lower is better)
Translates to: GSLEKAGWAKGELAPGELPLLSR*PPAAQT
Trigger: TGTTTGGGCAGCTGGGGGGCACCGGCTCAGGAGAGG...CAGCTCCCCGGGGGCCAACTCACCCTTGGCCCATCCCGCCTTCTCCAGGCTTCC
69% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENST00000370002.8
ENST00000539804.1
3UTR-3UTR TCA 90 bp CCGGGGAGCTGGTCCCTGTTCCTGGCTTTAGTCCCAGGGGCGCGGTCTGTGTGTAGTCCGCGGAGGCTGTaGATCGTTGCCCCCGCCCTC +
Preference number: 2 (lower is better)
Translates to: PGSWSLFLALVPGARSVCSPRRL*IVAPAL
Trigger: GAGGGCGGGGGCAACGATTCACAGCCTCCGCGGACT...ACACACAGACCGCGCCCCTGGGACTAAAGCCAGGAACAGGGACCAGCTCCCCGG
68% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000370002.8
3UTR-3UTR TCA 90 bp GGAAGCCTGGAGAAGGCGGGATGGGCCAAGGGTGAGTTGGCCCCCGGGGAGCTGGCAAGCCAGTCAAAATaGCCCCAGTCCGCGGAGGCT +
Preference number: 2 (lower is better)
Translates to: GSLEKAGWAKGELAPGELASQSK*PQSAEA
Trigger: AGCCTCCGCGGACTGGGGTCATTTTGACTGGCTTGC...CAGCTCCCCGGGGGCCAACTCACCCTTGGCCCATCCCGCCTTCTCCAGGCTTCC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENST00000370002.8
3UTR-3UTR CAA 90 bp GGGAGGGGAAGCCTGGAGAAGGCGGGATGGGCCAAGGGTGAGTTGGCCCCCGGGGGAGGCTGTGAATCGTaGCCCCCGCCCTCGGGGATG +
Preference number: 3 (lower is better)
Translates to: GRGSLEKAGWAKGELAPGGGCES*PPPSGM
Trigger: CATCCCCGAGGGCGGGGGCAACGATTCACAGCCTCC...CCCGGGGGCCAACTCACCCTTGGCCCATCCCGCCTTCTCCAGGCTTCCCCTCCC
71% GC, longest homopolymer 5 nt, total homopolymer stretches 23 nt.
Matches the following 1 transcripts:
ENST00000370002.8
CDS-3UTR TCA 90 bp GGGAGGGGAAGCCTGGAGAAGGCGGGATGGGCCAAGGGTGAGTTGGCCCCCGGGTGGCGCGCCGGTTCTTaGACCACACCCGCACGCGGG +
Preference number: 4 (lower is better)
Translates to: GRGSLEKAGWAKGELAPGWRAGS*TTPARG
Trigger: CCCGCGTGCGGGTGTGGTTCAAGAACCGGCGCGCCA...CCCGGGGGCCAACTCACCCTTGGCCCATCCCGCCTTCTCCAGGCTTCCCCTCCC
72% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000370002.8
ENST00000539804.1
CDS-3UTR TCA 90 bp GGGAGGGGAAGCCTGGAGAAGGCGGGATGGGCCAAGGGTGAGTTGGCCCCCGGGGGGATGGGCCAAGGGTaGGTTGGCCCCCGGGGAGCT +
Preference number: 4 (lower is better)
Translates to: GRGSLEKAGWAKGELAPGGMGQG*VGPRGA
Trigger: AGCTCCCCGGGGGCCAACTCACCCTTGGCCCATCCC...CCCGGGGGCCAACTCACCCTTGGCCCATCCCGCCTTCTCCAGGCTTCCCCTCCC
72% GC, longest homopolymer 6 nt, total homopolymer stretches 24 nt.
Matches the following 2 transcripts:
ENST00000370002.8
ENST00000539804.1
CDS-3UTR GCA 90 bp GGGAGGGGAAGCCTGGAGAAGGCGGGATGGGCCAAGGGTGAGTTGGCCCCCGGGCGGACTAAGGTTGGCTaGCGGGGGCGGCCCGTGCAC +
Preference number: 4 (lower is better)
Translates to: GRGSLEKAGWAKGELAPGRTKVG*RGRPVH
Trigger: GTGCACGGGCCGCCCCCGGCAGCCAACCTTAGTCCG...CCCGGGGGCCAACTCACCCTTGGCCCATCCCGCCTTCTCCAGGCTTCCCCTCCC
72% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENST00000370002.8
ENST00000539804.1
CDS-3UTR CCA 90 bp GGGAGGGGAAGCCTGGAGAAGGCGGGATGGGCCAAGGGTGAGTTGGCCCCCGGGCCGTGCTCTGGGAGCTaGGGGTGCGGAGTGCCAGCG +
Preference number: 4 (lower is better)
Translates to: GRGSLEKAGWAKGELAPGPCSGS*GCGVPA
Trigger: CGCTGGCACTCCGCACCCCCAGCTCCCAGAGCACGG...CCCGGGGGCCAACTCACCCTTGGCCCATCCCGCCTTCTCCAGGCTTCCCCTCCC
72% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000370002.8
ENST00000539804.1
CDS-3UTR CCA 90 bp GGGAGGGGAAGCCTGGAGAAGGCGGGATGGGCCAAGGGTGAGTTGGCCCCCGGGCAGCGAACCGTCCTCTaGGGAGCCGCCGGGCAGCGA +
Preference number: 4 (lower is better)
Translates to: GRGSLEKAGWAKGELAPGQRTVL*GAAGQR
Trigger: TCGCTGCCCGGCGGCTCCCCAGAGGACGGTTCGCTG...CCCGGGGGCCAACTCACCCTTGGCCCATCCCGCCTTCTCCAGGCTTCCCCTCCC
72% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000370002.8
ENST00000539804.1
CDS-3UTR CCA 90 bp GGGAGGGGAAGCCTGGAGAAGGCGGGATGGGCCAAGGGTGAGTTGGCCCCCGGGCGGCGGAGGGCACCATaGAGGCGGCGATGGAGCTGG +
Preference number: 4 (lower is better)
Translates to: GRGSLEKAGWAKGELAPGRRRAP*RRRWSW
Trigger: CCAGCTCCATCGCCGCCTCCATGGTGCCCTCCGCCG...CCCGGGGGCCAACTCACCCTTGGCCCATCCCGCCTTCTCCAGGCTTCCCCTCCC
72% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000370002.8
ENST00000539804.1
CDS-3UTR CCA 90 bp GGGAGGGGAAGCCTGGAGAAGGCGGGATGGGCCAAGGGTGAGTTGGCCCCCGGGGGGCCAAGGGTGAGTTaGCCCCCGGGGAGCTGGTCC +
Preference number: 4 (lower is better)
Translates to: GRGSLEKAGWAKGELAPGGPRVS*PPGSWS
Trigger: GGACCAGCTCCCCGGGGGCCAACTCACCCTTGGCCC...CCCGGGGGCCAACTCACCCTTGGCCCATCCCGCCTTCTCCAGGCTTCCCCTCCC
72% GC, longest homopolymer 6 nt, total homopolymer stretches 24 nt.
Matches the following 2 transcripts:
ENST00000370002.8
ENST00000539804.1
CDS-3UTR TCA 90 bp GGGAGGGGAAGCCTGGAGAAGGCGGGATGGGCCAAGGGTGAGTTGGCCCCCGGGGGGCCTCTGCCTCGCTaGGCAGGCCGAACTCCATGG +
Preference number: 4 (lower is better)
Translates to: GRGSLEKAGWAKGELAPGGPLPR*AGRTPW
Trigger: CCATGGAGTTCGGCCTGCTCAGCGAGGCAGAGGCCC...CCCGGGGGCCAACTCACCCTTGGCCCATCCCGCCTTCTCCAGGCTTCCCCTCCC
71% GC, longest homopolymer 6 nt, total homopolymer stretches 15 nt.
Matches the following 2 transcripts:
ENST00000370002.8
ENST00000539804.1
CDS-3UTR GCA 90 bp GGGAGGGGAAGCCTGGAGAAGGCGGGATGGGCCAAGGGTGAGTTGGCCCCCGGGGCTCGGCCTGCTGGCTaGGCTCGCGCTTCCGCCATT +
Preference number: 4 (lower is better)
Translates to: GRGSLEKAGWAKGELAPGARPAG*ARASAI
Trigger: AATGGCGGAAGCGCGAGCGCAGCCAGCAGGCCGAGC...CCCGGGGGCCAACTCACCCTTGGCCCATCCCGCCTTCTCCAGGCTTCCCCTCCC
71% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000370002.8
ENST00000539804.1
CDS-3UTR GCA 90 bp GGGAGGGGAAGCCTGGAGAAGGCGGGATGGGCCAAGGGTGAGTTGGCCCCCGGGGGCGAGAAGACGGGCTaGGAAGCCAGAGGCCCCACG +
Preference number: 4 (lower is better)
Translates to: GRGSLEKAGWAKGELAPGGEKTG*EARGPT
Trigger: CGTGGGGCCTCTGGCTTCGCAGCCCGTCTTCTCGCC...CCCGGGGGCCAACTCACCCTTGGCCCATCCCGCCTTCTCCAGGCTTCCCCTCCC
71% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 2 transcripts:
ENST00000370002.8
ENST00000539804.1
CDS-3UTR GCA 90 bp GGAAGCCTGGAGAAGGCGGGATGGGCCAAGGGTGAGTTGGCCCCCGGGGAGCTGCGGACTAAGGTTGGCTaGCGGGGGCGGCCCGTGCAC +
Preference number: 4 (lower is better)
Translates to: GSLEKAGWAKGELAPGELRTKVG*RGRPVH
Trigger: GTGCACGGGCCGCCCCCGGCAGCCAACCTTAGTCCG...CAGCTCCCCGGGGGCCAACTCACCCTTGGCCCATCCCGCCTTCTCCAGGCTTCC
71% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENST00000370002.8
ENST00000539804.1
CDS-3UTR CCA 90 bp GGGAGGGGAAGCCTGGAGAAGGCGGGATGGGCCAAGGGTGAGTTGGCCCCCGGGCCGCTCGGGCGCTCCTaGACTCTCGGAGGGAGTGAG +
Preference number: 4 (lower is better)
Translates to: GRGSLEKAGWAKGELAPGPLGRS*TLGGSE
Trigger: CTCACTCCCTCCGAGAGTCCAGGAGCGCCCGAGCGG...CCCGGGGGCCAACTCACCCTTGGCCCATCCCGCCTTCTCCAGGCTTCCCCTCCC
71% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000370002.8
CDS-3UTR CCA 90 bp GGGAGGGGAAGCCTGGAGAAGGCGGGATGGGCCAAGGGTGAGTTGGCCCCCGGGGCGGGGCAAGAGCCTTaGGCGGCCAGTTGCCGTACG +
Preference number: 4 (lower is better)
Translates to: GRGSLEKAGWAKGELAPGAGQEP*AASCRT
Trigger: CGTACGGCAACTGGCCGCCCAAGGCTCTTGCCCCGC...CCCGGGGGCCAACTCACCCTTGGCCCATCCCGCCTTCTCCAGGCTTCCCCTCCC
71% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENST00000370002.8
ENST00000539804.1
CDS-3UTR TCA 90 bp GGAAGCCTGGAGAAGGCGGGATGGGCCAAGGGTGAGTTGGCCCCCGGGGAGCTGCGGAGTGCCAGCGTCTaGCAGCGACAGGGCAGGGCT +
Preference number: 4 (lower is better)
Translates to: GSLEKAGWAKGELAPGELRSASV*QRQGRA
Trigger: AGCCCTGCCCTGTCGCTGTCAGACGCTGGCACTCCG...CAGCTCCCCGGGGGCCAACTCACCCTTGGCCCATCCCGCCTTCTCCAGGCTTCC
70% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000370002.8
ENST00000539804.1
CDS-3UTR TCA 90 bp GGAAGCCTGGAGAAGGCGGGATGGGCCAAGGGTGAGTTGGCCCCCGGGGAGCTGGTAGCTGCTGGCTGGTaGAGTGCGTGCGCTGCCGCC +
Preference number: 4 (lower is better)
Translates to: GSLEKAGWAKGELAPGELVAAGW*SACAAA
Trigger: GGCGGCAGCGCACGCACTTCACCAGCCAGCAGCTAC...CAGCTCCCCGGGGGCCAACTCACCCTTGGCCCATCCCGCCTTCTCCAGGCTTCC
70% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000370002.8
ENST00000539804.1
CDS-3UTR GCA 90 bp GGAAGCCTGGAGAAGGCGGGATGGGCCAAGGGTGAGTTGGCCCCCGGGGAGCTGAGGGCTCCGGGCCTCTaGCTCGCTGAGCAGGCCGAA +
Preference number: 4 (lower is better)
Translates to: GSLEKAGWAKGELAPGELRAPGL*LAEQAE
Trigger: TTCGGCCTGCTCAGCGAGGCAGAGGCCCGGAGCCCT...CAGCTCCCCGGGGGCCAACTCACCCTTGGCCCATCCCGCCTTCTCCAGGCTTCC
70% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000370002.8
ENST00000539804.1
CDS-3UTR GCA 90 bp GGAAGCCTGGAGAAGGCGGGATGGGCCAAGGGTGAGTTGGCCCCCGGGGAGCTGTGGCCCTTGCAGCCGTaGTCTGGGAGCTGGGGGTGC +
Preference number: 4 (lower is better)
Translates to: GSLEKAGWAKGELAPGELWPLQP*SGSWGC
Trigger: GCACCCCCAGCTCCCAGAGCACGGCTGCAAGGGCCA...CAGCTCCCCGGGGGCCAACTCACCCTTGGCCCATCCCGCCTTCTCCAGGCTTCC
70% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENST00000370002.8
ENST00000539804.1
CDS-3UTR GCA 90 bp GGAAGCCTGGAGAAGGCGGGATGGGCCAAGGGTGAGTTGGCCCCCGGGGAGCTGGCTCGGCCTGCTGGCTaGGCTCGCGCTTCCGCCATT +
Preference number: 4 (lower is better)
Translates to: GSLEKAGWAKGELAPGELARPAG*ARASAI
Trigger: AATGGCGGAAGCGCGAGCGCAGCCAGCAGGCCGAGC...CAGCTCCCCGGGGGCCAACTCACCCTTGGCCCATCCCGCCTTCTCCAGGCTTCC
70% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000370002.8
ENST00000539804.1
CDS-3UTR GCA 90 bp GGGAGGGGAAGCCTGGAGAAGGCGGGATGGGCCAAGGGTGAGTTGGCCCCCGGGGCGGCGCCGCGAAGCTaGCTTTGCATAGCTCGGCCT +
Preference number: 4 (lower is better)
Translates to: GRGSLEKAGWAKGELAPGAAPRS*LCIARP
Trigger: AGGCCGAGCTATGCAAAGGCAGCTTCGCGGCGCCGC...CCCGGGGGCCAACTCACCCTTGGCCCATCCCGCCTTCTCCAGGCTTCCCCTCCC
70% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000370002.8
ENST00000539804.1
CDS-3UTR GCA 90 bp GGAAGCCTGGAGAAGGCGGGATGGGCCAAGGGTGAGTTGGCCCCCGGGGAGCTGGGCGAGAAGACGGGCTaGGAAGCCAGAGGCCCCACG +
Preference number: 4 (lower is better)
Translates to: GSLEKAGWAKGELAPGELGEKTG*EARGPT
Trigger: CGTGGGGCCTCTGGCTTCGCAGCCCGTCTTCTCGCC...CAGCTCCCCGGGGGCCAACTCACCCTTGGCCCATCCCGCCTTCTCCAGGCTTCC
70% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000370002.8
ENST00000539804.1
CDS-3UTR CCA 90 bp GGGAGGGGAAGCCTGGAGAAGGCGGGATGGGCCAAGGGTGAGTTGGCCCCCGGGCTTGCAGCCGTGCTCTaGGAGCTGGGGGTGCGGAGT +
Preference number: 4 (lower is better)
Translates to: GRGSLEKAGWAKGELAPGLAAVL*ELGVRS
Trigger: ACTCCGCACCCCCAGCTCCCAGAGCACGGCTGCAAG...CCCGGGGGCCAACTCACCCTTGGCCCATCCCGCCTTCTCCAGGCTTCCCCTCCC
70% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENST00000370002.8
ENST00000539804.1
CDS-3UTR TCA 90 bp GGAAGCCTGGAGAAGGCGGGATGGGCCAAGGGTGAGTTGGCCCCCGGGGAGCTGGACTCTCGGAGGGAGTaGGCCTCACCGCGTACTGCC +
Preference number: 4 (lower is better)
Translates to: GSLEKAGWAKGELAPGELDSRRE*ASPRTA
Trigger: GGCAGTACGCGGTGAGGCTCACTCCCTCCGAGAGTC...CAGCTCCCCGGGGGCCAACTCACCCTTGGCCCATCCCGCCTTCTCCAGGCTTCC
69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000370002.8
CDS-3UTR TCA 90 bp CCGGGGAGCTGGTCCCTGTTCCTGGCTTTAGTCCCAGGGGCGCGGTCTGTGTGTTGGCGCGCCGGTTCTTaGACCACACCCGCACGCGGG +
Preference number: 4 (lower is better)
Translates to: PGSWSLFLALVPGARSVCWRAGS*TTPARG
Trigger: CCCGCGTGCGGGTGTGGTTCAAGAACCGGCGCGCCA...ACACACAGACCGCGCCCCTGGGACTAAAGCCAGGAACAGGGACCAGCTCCCCGG
69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000370002.8
ENST00000539804.1
CDS-3UTR TCA 90 bp GGGAGGGGAAGCCTGGAGAAGGCGGGATGGGCCAAGGGTGAGTTGGCCCCCGGGGCACAGCGGGGTAGCTaGAGGAGGCGTGCTGTTTGG +
Preference number: 4 (lower is better)
Translates to: GRGSLEKAGWAKGELAPGAQRGS*RRRAVW
Trigger: CCAAACAGCACGCCTCCTTCAGCTACCCCGCTGTGC...CCCGGGGGCCAACTCACCCTTGGCCCATCCCGCCTTCTCCAGGCTTCCCCTCCC
69% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENST00000370002.8
ENST00000539804.1
CDS-3UTR TCA 90 bp CCGGGGAGCTGGTCCCTGTTCCTGGCTTTAGTCCCAGGGGCGCGGTCTGTGTGTGGGATGGGCCAAGGGTaGGTTGGCCCCCGGGGAGCT +
Preference number: 4 (lower is better)
Translates to: PGSWSLFLALVPGARSVCGMGQG*VGPRGA
Trigger: AGCTCCCCGGGGGCCAACTCACCCTTGGCCCATCCC...ACACACAGACCGCGCCCCTGGGACTAAAGCCAGGAACAGGGACCAGCTCCCCGG
69% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENST00000370002.8
ENST00000539804.1
CDS-3UTR GCA 90 bp CCGGGGAGCTGGTCCCTGTTCCTGGCTTTAGTCCCAGGGGCGCGGTCTGTGTGTCCCAGTAGCGGCGGCTaGGGCGGCGATCTAGAGGGC +
Preference number: 4 (lower is better)
Translates to: PGSWSLFLALVPGARSVCPSSGG*GGDLEG
Trigger: GCCCTCTAGATCGCCGCCGCAGCCGCCGCTACTGGG...ACACACAGACCGCGCCCCTGGGACTAAAGCCAGGAACAGGGACCAGCTCCCCGG
69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000370002.8
CDS-3UTR GCA 90 bp GGAAGCCTGGAGAAGGCGGGATGGGCCAAGGGTGAGTTGGCCCCCGGGGAGCTGGCTGGGGGTGCGGAGTaGCAGCGTCTGACAGCGACA +
Preference number: 4 (lower is better)
Translates to: GSLEKAGWAKGELAPGELAGGAE*QRLTAT
Trigger: TGTCGCTGTCAGACGCTGGCACTCCGCACCCCCAGC...CAGCTCCCCGGGGGCCAACTCACCCTTGGCCCATCCCGCCTTCTCCAGGCTTCC
69% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENST00000370002.8
ENST00000539804.1
CDS-3UTR GCA 90 bp GGGAGGGGAAGCCTGGAGAAGGCGGGATGGGCCAAGGGTGAGTTGGCCCCCGGGTGTGCTCCTGGCCCTTaGAGCCGTGCTCTGGGAGCT +
Preference number: 4 (lower is better)
Translates to: GRGSLEKAGWAKGELAPGCAPGP*SRALGA
Trigger: AGCTCCCAGAGCACGGCTGCAAGGGCCAGGAGCACA...CCCGGGGGCCAACTCACCCTTGGCCCATCCCGCCTTCTCCAGGCTTCCCCTCCC
69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000370002.8
ENST00000539804.1
CDS-3UTR GCA 90 bp GGAAGCCTGGAGAAGGCGGGATGGGCCAAGGGTGAGTTGGCCCCCGGGGAGCTGCCTTGGGCGGCCAGTTaGCGTACGAGTAGCCGGGGT +
Preference number: 4 (lower is better)
Translates to: GSLEKAGWAKGELAPGELPWAAS*RTSSRG
Trigger: ACCCCGGCTACTCGTACGGCAACTGGCCGCCCAAGG...CAGCTCCCCGGGGGCCAACTCACCCTTGGCCCATCCCGCCTTCTCCAGGCTTCC
69% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000370002.8
ENST00000539804.1
CDS-3UTR CCA 90 bp CCGGGGAGCTGGTCCCTGTTCCTGGCTTTAGTCCCAGGGGCGCGGTCTGTGTGTCCGTGCTCTGGGAGCTaGGGGTGCGGAGTGCCAGCG +
Preference number: 4 (lower is better)
Translates to: PGSWSLFLALVPGARSVCPCSGS*GCGVPA
Trigger: CGCTGGCACTCCGCACCCCCAGCTCCCAGAGCACGG...ACACACAGACCGCGCCCCTGGGACTAAAGCCAGGAACAGGGACCAGCTCCCCGG
69% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000370002.8
ENST00000539804.1
CDS-3UTR CCA 90 bp CCGGGGAGCTGGTCCCTGTTCCTGGCTTTAGTCCCAGGGGCGCGGTCTGTGTGTCAGCGAACCGTCCTCTaGGGAGCCGCCGGGCAGCGA +
Preference number: 4 (lower is better)
Translates to: PGSWSLFLALVPGARSVCQRTVL*GAAGQR
Trigger: TCGCTGCCCGGCGGCTCCCCAGAGGACGGTTCGCTG...ACACACAGACCGCGCCCCTGGGACTAAAGCCAGGAACAGGGACCAGCTCCCCGG
69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000370002.8
ENST00000539804.1
CDS-3UTR CCA 90 bp GGAAGCCTGGAGAAGGCGGGATGGGCCAAGGGTGAGTTGGCCCCCGGGGAGCTGGGCGATGGAGCTGGGTaGCGAGAAGACGGGCTGCGA +
Preference number: 4 (lower is better)
Translates to: GSLEKAGWAKGELAPGELGDGAG*REDGLR
Trigger: TCGCAGCCCGTCTTCTCGCCACCCAGCTCCATCGCC...CAGCTCCCCGGGGGCCAACTCACCCTTGGCCCATCCCGCCTTCTCCAGGCTTCC
69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000370002.8
ENST00000539804.1
CDS-3UTR CCA 90 bp GGGAGGGGAAGCCTGGAGAAGGCGGGATGGGCCAAGGGTGAGTTGGCCCCCGGGTGGCCCCCGGGGAGCTaGTCCCTGTTCCTGGCTTTA +
Preference number: 4 (lower is better)
Translates to: GRGSLEKAGWAKGELAPGWPPGS*SLFLAL
Trigger: TAAAGCCAGGAACAGGGACCAGCTCCCCGGGGGCCA...CCCGGGGGCCAACTCACCCTTGGCCCATCCCGCCTTCTCCAGGCTTCCCCTCCC
69% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 2 transcripts:
ENST00000370002.8
ENST00000539804.1
CDS-3UTR CCA 90 bp GGGAGGGGAAGCCTGGAGAAGGCGGGATGGGCCAAGGGTGAGTTGGCCCCCGGGCTGGAGAAGGCGGGATaGGCCAAGGGTGAGTTGGCC +
Preference number: 4 (lower is better)
Translates to: GRGSLEKAGWAKGELAPGLEKAG*AKGELA
Trigger: GGCCAACTCACCCTTGGCCCATCCCGCCTTCTCCAG...CCCGGGGGCCAACTCACCCTTGGCCCATCCCGCCTTCTCCAGGCTTCCCCTCCC
69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000370002.8
ENST00000539804.1
CDS-3UTR TCA 90 bp CCGGGGAGCTGGTCCCTGTTCCTGGCTTTAGTCCCAGGGGCGCGGTCTGTGTGTGGGCCTCTGCCTCGCTaGGCAGGCCGAACTCCATGG +
Preference number: 4 (lower is better)
Translates to: PGSWSLFLALVPGARSVCGPLPR*AGRTPW
Trigger: CCATGGAGTTCGGCCTGCTCAGCGAGGCAGAGGCCC...ACACACAGACCGCGCCCCTGGGACTAAAGCCAGGAACAGGGACCAGCTCCCCGG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000370002.8
ENST00000539804.1
CDS-3UTR GCA 90 bp GGAAGCCTGGAGAAGGCGGGATGGGCCAAGGGTGAGTTGGCCCCCGGGGAGCTGTGTGCTCCTGGCCCTTaGAGCCGTGCTCTGGGAGCT +
Preference number: 4 (lower is better)
Translates to: GSLEKAGWAKGELAPGELCAPGP*SRALGA
Trigger: AGCTCCCAGAGCACGGCTGCAAGGGCCAGGAGCACA...CAGCTCCCCGGGGGCCAACTCACCCTTGGCCCATCCCGCCTTCTCCAGGCTTCC
68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000370002.8
ENST00000539804.1
CDS-3UTR GCA 90 bp GGAAGCCTGGAGAAGGCGGGATGGGCCAAGGGTGAGTTGGCCCCCGGGGAGCTGCCGCGAAGCTGCCTTTaGATAGCTCGGCCTGCTGGC +
Preference number: 4 (lower is better)
Translates to: GSLEKAGWAKGELAPGELPRSCL*IARPAG
Trigger: GCCAGCAGGCCGAGCTATGCAAAGGCAGCTTCGCGG...CAGCTCCCCGGGGGCCAACTCACCCTTGGCCCATCCCGCCTTCTCCAGGCTTCC
68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000370002.8
ENST00000539804.1
CDS-3UTR CCA 90 bp GGAAGCCTGGAGAAGGCGGGATGGGCCAAGGGTGAGTTGGCCCCCGGGGAGCTGCGAATGGAAAGGTCTTaGCGGCGAGCGGCGGGGCAA +
Preference number: 4 (lower is better)
Translates to: GSLEKAGWAKGELAPGELRMERS*RRAAGQ
Trigger: TTGCCCCGCCGCTCGCCGCCAAGACCTTTCCATTCG...CAGCTCCCCGGGGGCCAACTCACCCTTGGCCCATCCCGCCTTCTCCAGGCTTCC
68% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000370002.8
ENST00000539804.1
CDS-3UTR GCA 90 bp CCGGGGAGCTGGTCCCTGTTCCTGGCTTTAGTCCCAGGGGCGCGGTCTGTGTGTGCTGGGGGTGCGGAGTaGCAGCGTCTGACAGCGACA +
Preference number: 4 (lower is better)
Translates to: PGSWSLFLALVPGARSVCAGGAE*QRLTAT
Trigger: TGTCGCTGTCAGACGCTGGCACTCCGCACCCCCAGC...ACACACAGACCGCGCCCCTGGGACTAAAGCCAGGAACAGGGACCAGCTCCCCGG
67% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000370002.8
ENST00000539804.1
CDS-3UTR GCA 90 bp GGGAGGGGAAGCCTGGAGAAGGCGGGATGGGCCAAGGGTGAGTTGGCCCCCGGGTTTTCTGAGTCGCTGTaGTCCTGGCCCTTGCAGCCG +
Preference number: 4 (lower is better)
Translates to: GRGSLEKAGWAKGELAPGFSESL*SWPLQP
Trigger: CGGCTGCAAGGGCCAGGAGCACAGCGACTCAGAAAA...CCCGGGGGCCAACTCACCCTTGGCCCATCCCGCCTTCTCCAGGCTTCCCCTCCC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000370002.8
ENST00000539804.1
CDS-3UTR GCA 90 bp GGGAGGGGAAGCCTGGAGAAGGCGGGATGGGCCAAGGGTGAGTTGGCCCCCGGGGTGAAGTGCGTGCGCTaGCGCCGCTGCTTCTTTTTC +
Preference number: 4 (lower is better)
Translates to: GRGSLEKAGWAKGELAPGVKCVR*RRCFFF
Trigger: GAAAAAGAAGCAGCGGCGGCAGCGCACGCACTTCAC...CCCGGGGGCCAACTCACCCTTGGCCCATCCCGCCTTCTCCAGGCTTCCCCTCCC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 2 transcripts:
ENST00000370002.8
ENST00000539804.1
CDS-3UTR GCA 90 bp CCGGGGAGCTGGTCCCTGTTCCTGGCTTTAGTCCCAGGGGCGCGGTCTGTGTGTCCTCTCCTGAGCCGGTaGCCCCCAGCTGCCCAAACA +
Preference number: 4 (lower is better)
Translates to: PGSWSLFLALVPGARSVCPLLSR*PPAAQT
Trigger: TGTTTGGGCAGCTGGGGGGCACCGGCTCAGGAGAGG...ACACACAGACCGCGCCCCTGGGACTAAAGCCAGGAACAGGGACCAGCTCCCCGG
67% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000370002.8
ENST00000539804.1
CDS-3UTR CCA 90 bp GGAAGCCTGGAGAAGGCGGGATGGGCCAAGGGTGAGTTGGCCCCCGGGGAGCTGAGCTCCTGTAGCTGCTaGCTGGTGAAGTGCGTGCGC +
Preference number: 4 (lower is better)
Translates to: GSLEKAGWAKGELAPGELSSCSC*LVKCVR
Trigger: GCGCACGCACTTCACCAGCCAGCAGCTACAGGAGCT...CAGCTCCCCGGGGGCCAACTCACCCTTGGCCCATCCCGCCTTCTCCAGGCTTCC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000370002.8
ENST00000539804.1
CDS-3UTR CCA 90 bp CCGGGGAGCTGGTCCCTGTTCCTGGCTTTAGTCCCAGGGGCGCGGTCTGTGTGTGGCGATGGAGCTGGGTaGCGAGAAGACGGGCTGCGA +
Preference number: 4 (lower is better)
Translates to: PGSWSLFLALVPGARSVCGDGAG*REDGLR
Trigger: TCGCAGCCCGTCTTCTCGCCACCCAGCTCCATCGCC...ACACACAGACCGCGCCCCTGGGACTAAAGCCAGGAACAGGGACCAGCTCCCCGG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000370002.8
ENST00000539804.1
CDS-3UTR TCA 90 bp CCGGGGAGCTGGTCCCTGTTCCTGGCTTTAGTCCCAGGGGCGCGGTCTGTGTGTGCACAGCGGGGTAGCTaGAGGAGGCGTGCTGTTTGG +
Preference number: 4 (lower is better)
Translates to: PGSWSLFLALVPGARSVCAQRGS*RRRAVW
Trigger: CCAAACAGCACGCCTCCTTCAGCTACCCCGCTGTGC...ACACACAGACCGCGCCCCTGGGACTAAAGCCAGGAACAGGGACCAGCTCCCCGG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000370002.8
ENST00000539804.1
CDS-3UTR GCA 90 bp GGAAGCCTGGAGAAGGCGGGATGGGCCAAGGGTGAGTTGGCCCCCGGGGAGCTGAGGGCTAGTGCGTCCTaGAACAGGCAGACTCCCAGT +
Preference number: 4 (lower is better)
Translates to: GSLEKAGWAKGELAPGELRASAS*NRQTPS
Trigger: ACTGGGAGTCTGCCTGTTGCAGGACGCACTAGCCCT...CAGCTCCCCGGGGGCCAACTCACCCTTGGCCCATCCCGCCTTCTCCAGGCTTCC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000370002.8
CDS-3UTR GCA 90 bp CCGGGGAGCTGGTCCCTGTTCCTGGCTTTAGTCCCAGGGGCGCGGTCTGTGTGTCCGCGAAGCTGCCTTTaGATAGCTCGGCCTGCTGGC +
Preference number: 4 (lower is better)
Translates to: PGSWSLFLALVPGARSVCPRSCL*IARPAG
Trigger: GCCAGCAGGCCGAGCTATGCAAAGGCAGCTTCGCGG...ACACACAGACCGCGCCCCTGGGACTAAAGCCAGGAACAGGGACCAGCTCCCCGG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000370002.8
ENST00000539804.1
CDS-3UTR CCA 90 bp CCGGGGAGCTGGTCCCTGTTCCTGGCTTTAGTCCCAGGGGCGCGGTCTGTGTGTGAGTCGCTGTGCTCCTaGCCCTTGCAGCCGTGCTCT +
Preference number: 4 (lower is better)
Translates to: PGSWSLFLALVPGARSVCESLCS*PLQPCS
Trigger: AGAGCACGGCTGCAAGGGCCAGGAGCACAGCGACTC...ACACACAGACCGCGCCCCTGGGACTAAAGCCAGGAACAGGGACCAGCTCCCCGG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000370002.8
ENST00000539804.1
CDS-3UTR CCA 90 bp CCGGGGAGCTGGTCCCTGTTCCTGGCTTTAGTCCCAGGGGCGCGGTCTGTGTGTCGAATGGAAAGGTCTTaGCGGCGAGCGGCGGGGCAA +
Preference number: 4 (lower is better)
Translates to: PGSWSLFLALVPGARSVCRMERS*RRAAGQ
Trigger: TTGCCCCGCCGCTCGCCGCCAAGACCTTTCCATTCG...ACACACAGACCGCGCCCCTGGGACTAAAGCCAGGAACAGGGACCAGCTCCCCGG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000370002.8
ENST00000539804.1
CDS-3UTR CCA 90 bp GGGAGGGGAAGCCTGGAGAAGGCGGGATGGGCCAAGGGTGAGTTGGCCCCCGGGCTTTCCACGGCGTACTaGCACGGACTAAGGTTGGCT +
Preference number: 4 (lower is better)
Translates to: GRGSLEKAGWAKGELAPGLSTAY*HGLRLA
Trigger: AGCCAACCTTAGTCCGTGCCAGTACGCCGTGGAAAG...CCCGGGGGCCAACTCACCCTTGGCCCATCCCGCCTTCTCCAGGCTTCCCCTCCC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000370002.8
ENST00000539804.1
CDS-3UTR CCA 90 bp CCGGGGAGCTGGTCCCTGTTCCTGGCTTTAGTCCCAGGGGCGCGGTCTGTGTGTCTGGAGAAGGCGGGATaGGCCAAGGGTGAGTTGGCC +
Preference number: 4 (lower is better)
Translates to: PGSWSLFLALVPGARSVCLEKAG*AKGELA
Trigger: GGCCAACTCACCCTTGGCCCATCCCGCCTTCTCCAG...ACACACAGACCGCGCCCCTGGGACTAAAGCCAGGAACAGGGACCAGCTCCCCGG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000370002.8
ENST00000539804.1
CDS-3UTR GCA 90 bp GGAAGCCTGGAGAAGGCGGGATGGGCCAAGGGTGAGTTGGCCCCCGGGGAGCTGTCTAGCTCCTGTAGCTaGTGGCTGGTGAAGTGCGTG +
Preference number: 4 (lower is better)
Translates to: GSLEKAGWAKGELAPGELSSSCS*WLVKCV
Trigger: CACGCACTTCACCAGCCAGCAGCTACAGGAGCTAGA...CAGCTCCCCGGGGGCCAACTCACCCTTGGCCCATCCCGCCTTCTCCAGGCTTCC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000370002.8
ENST00000539804.1
CDS-3UTR CCA 90 bp CCGGGGAGCTGGTCCCTGTTCCTGGCTTTAGTCCCAGGGGCGCGGTCTGTGTGTAGCTCCTGTAGCTGCTaGCTGGTGAAGTGCGTGCGC +
Preference number: 4 (lower is better)
Translates to: PGSWSLFLALVPGARSVCSSCSC*LVKCVR
Trigger: GCGCACGCACTTCACCAGCCAGCAGCTACAGGAGCT...ACACACAGACCGCGCCCCTGGGACTAAAGCCAGGAACAGGGACCAGCTCCCCGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000370002.8
ENST00000539804.1
CDS-3UTR CCA 90 bp GGAAGCCTGGAGAAGGCGGGATGGGCCAAGGGTGAGTTGGCCCCCGGGGAGCTGCGAGTTGAAGGCGAATaGAAAGGTCTTGGCGGCGAG +
Preference number: 4 (lower is better)
Translates to: GSLEKAGWAKGELAPGELRVEGE*KGLGGE
Trigger: CTCGCCGCCAAGACCTTTCCATTCGCCTTCAACTCG...CAGCTCCCCGGGGGCCAACTCACCCTTGGCCCATCCCGCCTTCTCCAGGCTTCC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000370002.8
ENST00000539804.1
CDS-3UTR GCA 90 bp CCGGGGAGCTGGTCCCTGTTCCTGGCTTTAGTCCCAGGGGCGCGGTCTGTGTGTTTTTCTGAGTCGCTGTaGTCCTGGCCCTTGCAGCCG +
Preference number: 4 (lower is better)
Translates to: PGSWSLFLALVPGARSVCFSESL*SWPLQP
Trigger: CGGCTGCAAGGGCCAGGAGCACAGCGACTCAGAAAA...ACACACAGACCGCGCCCCTGGGACTAAAGCCAGGAACAGGGACCAGCTCCCCGG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000370002.8
ENST00000539804.1
CDS-3UTR GCA 90 bp CCGGGGAGCTGGTCCCTGTTCCTGGCTTTAGTCCCAGGGGCGCGGTCTGTGTGTGTGAAGTGCGTGCGCTaGCGCCGCTGCTTCTTTTTC +
Preference number: 4 (lower is better)
Translates to: PGSWSLFLALVPGARSVCVKCVR*RRCFFF
Trigger: GAAAAAGAAGCAGCGGCGGCAGCGCACGCACTTCAC...ACACACAGACCGCGCCCCTGGGACTAAAGCCAGGAACAGGGACCAGCTCCCCGG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000370002.8
ENST00000539804.1
CDS-3UTR GCA 90 bp CCGGGGAGCTGGTCCCTGTTCCTGGCTTTAGTCCCAGGGGCGCGGTCTGTGTGTTCTAGCTCCTGTAGCTaGTGGCTGGTGAAGTGCGTG +
Preference number: 4 (lower is better)
Translates to: PGSWSLFLALVPGARSVCSSSCS*WLVKCV
Trigger: CACGCACTTCACCAGCCAGCAGCTACAGGAGCTAGA...ACACACAGACCGCGCCCCTGGGACTAAAGCCAGGAACAGGGACCAGCTCCCCGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000370002.8
ENST00000539804.1
CDS-3UTR CCA 90 bp CCGGGGAGCTGGTCCCTGTTCCTGGCTTTAGTCCCAGGGGCGCGGTCTGTGTGTCGAGTTGAAGGCGAATaGAAAGGTCTTGGCGGCGAG +
Preference number: 4 (lower is better)
Translates to: PGSWSLFLALVPGARSVCRVEGE*KGLGGE
Trigger: CTCGCCGCCAAGACCTTTCCATTCGCCTTCAACTCG...ACACACAGACCGCGCCCCTGGGACTAAAGCCAGGAACAGGGACCAGCTCCCCGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000370002.8
ENST00000539804.1
CDS-3UTR CCA 90 bp CCGGGGAGCTGGTCCCTGTTCCTGGCTTTAGTCCCAGGGGCGCGGTCTGTGTGTCTTTCCACGGCGTACTaGCACGGACTAAGGTTGGCT +
Preference number: 4 (lower is better)
Translates to: PGSWSLFLALVPGARSVCLSTAY*HGLRLA
Trigger: AGCCAACCTTAGTCCGTGCCAGTACGCCGTGGAAAG...ACACACAGACCGCGCCCCTGGGACTAAAGCCAGGAACAGGGACCAGCTCCCCGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000370002.8
ENST00000539804.1
CDS-3UTR CAA 90 bp GGGAGGGGAAGCCTGGAGAAGGCGGGATGGGCCAAGGGTGAGTTGGCCCCCGGGTGGCACGGACTAAGGTaGGCTGCCGGGGGCGGCCCG +
Preference number: 5 (lower is better)
Translates to: GRGSLEKAGWAKGELAPGWHGLR*AAGGGP
Trigger: CGGGCCGCCCCCGGCAGCCAACCTTAGTCCGTGCCA...CCCGGGGGCCAACTCACCCTTGGCCCATCCCGCCTTCTCCAGGCTTCCCCTCCC
73% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENST00000370002.8
ENST00000539804.1
CDS GCA 90 bp GCTCCTGGCCCTTGCAGCCGTGCTCTGGGAGCTGGGGGTGCGGAGTaGCAGCGTCTGACAGCGACAGGGCAGGGCTCCGGGCCTCTGCCT +
Preference number: 5 (lower is better)
Translates to: APGPCSRALGAGGAE*QRLTATGQGSGPLP
Trigger: AGGCAGAGGCCCGGAGCCCTGCCCTGTCGCTGTCAGACGCTGGCACTCCGCACCCCCAGCTCCCAGAGCACGGCTGCAAGGGCCAGGAGC
72% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000370002.8
ENST00000539804.1
CDS-3UTR CAA 90 bp GGGAGGGGAAGCCTGGAGAAGGCGGGATGGGCCAAGGGTGAGTTGGCCCCCGGGTGGGCCAAGGGTGAGTaGGCCCCCGGGGAGCTGGTC +
Preference number: 5 (lower is better)
Translates to: GRGSLEKAGWAKGELAPGWAKGE*APGELV
Trigger: GACCAGCTCCCCGGGGGCCAACTCACCCTTGGCCCA...CCCGGGGGCCAACTCACCCTTGGCCCATCCCGCCTTCTCCAGGCTTCCCCTCCC
72% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 2 transcripts:
ENST00000370002.8
ENST00000539804.1
CDS-3UTR CAA 90 bp GGGAGGGGAAGCCTGGAGAAGGCGGGATGGGCCAAGGGTGAGTTGGCCCCCGGGGCGAATGGAAAGGTCTaGGCGGCGAGCGGCGGGGCA +
Preference number: 5 (lower is better)
Translates to: GRGSLEKAGWAKGELAPGANGKV*AASGGA
Trigger: TGCCCCGCCGCTCGCCGCCAAGACCTTTCCATTCGC...CCCGGGGGCCAACTCACCCTTGGCCCATCCCGCCTTCTCCAGGCTTCCCCTCCC
71% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENST00000370002.8
ENST00000539804.1
CDS-3UTR CAA 90 bp GGAAGCCTGGAGAAGGCGGGATGGGCCAAGGGTGAGTTGGCCCCCGGGGAGCTGCTGTGCTCCTGGCCCTaGCAGCCGTGCTCTGGGAGC +
Preference number: 5 (lower is better)
Translates to: GSLEKAGWAKGELAPGELLCSWP*QPCSGS
Trigger: GCTCCCAGAGCACGGCTGCAAGGGCCAGGAGCACAG...CAGCTCCCCGGGGGCCAACTCACCCTTGGCCCATCCCGCCTTCTCCAGGCTTCC
70% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000370002.8
ENST00000539804.1
CDS-3UTR CAA 90 bp GGGAGGGGAAGCCTGGAGAAGGCGGGATGGGCCAAGGGTGAGTTGGCCCCCGGGGCCGCGAAGCTGCCTTaGCATAGCTCGGCCTGCTGG +
Preference number: 5 (lower is better)
Translates to: GRGSLEKAGWAKGELAPGAAKLP*HSSACW
Trigger: CCAGCAGGCCGAGCTATGCAAAGGCAGCTTCGCGGC...CCCGGGGGCCAACTCACCCTTGGCCCATCCCGCCTTCTCCAGGCTTCCCCTCCC
70% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000370002.8
ENST00000539804.1
CDS-3UTR CAA 90 bp CCGGGGAGCTGGTCCCTGTTCCTGGCTTTAGTCCCAGGGGCGCGGTCTGTGTGTTGGCACGGACTAAGGTaGGCTGCCGGGGGCGGCCCG +
Preference number: 5 (lower is better)
Translates to: PGSWSLFLALVPGARSVCWHGLR*AAGGGP
Trigger: CGGGCCGCCCCCGGCAGCCAACCTTAGTCCGTGCCA...ACACACAGACCGCGCCCCTGGGACTAAAGCCAGGAACAGGGACCAGCTCCCCGG
70% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000370002.8
ENST00000539804.1
CDS CCA 90 bp TCTGAGTCGCTGTGCTCCTGGCCCTTGCAGCCGTGCTCTGGGAGCTaGGGGTGCGGAGTGCCAGCGTCTGACAGCGACAGGGCAGGGCTC +
Preference number: 5 (lower is better)
Translates to: SESLCSWPLQPCSGS*GCGVPASDSDRAGL
Trigger: GAGCCCTGCCCTGTCGCTGTCAGACGCTGGCACTCCGCACCCCCAGCTCCCAGAGCACGGCTGCAAGGGCCAGGAGCACAGCGACTCAGA
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000370002.8
ENST00000539804.1
CDS-3UTR CAA 90 bp CCGGGGAGCTGGTCCCTGTTCCTGGCTTTAGTCCCAGGGGCGCGGTCTGTGTGTGGCGGGGCAAGAGCCTaGGGCGGCCAGTTGCCGTAC +
Preference number: 5 (lower is better)
Translates to: PGSWSLFLALVPGARSVCGGARA*GGQLPY
Trigger: GTACGGCAACTGGCCGCCCAAGGCTCTTGCCCCGCC...ACACACAGACCGCGCCCCTGGGACTAAAGCCAGGAACAGGGACCAGCTCCCCGG
69% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000370002.8
ENST00000539804.1
CDS GCA 90 bp GCCGAGGCCTTTTCTGAGTCGCTGTGCTCCTGGCCCTTGCAGCCGTaGTCTGGGAGCTGGGGGTGCGGAGTGCCAGCGTCTGACAGCGAC +
Preference number: 5 (lower is better)
Translates to: AEAFSESLCSWPLQP*SGSWGCGVPASDSD
Trigger: GTCGCTGTCAGACGCTGGCACTCCGCACCCCCAGCTCCCAGAGCACGGCTGCAAGGGCCAGGAGCACAGCGACTCAGAAAAGGCCTCGGC
68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000370002.8
ENST00000539804.1
CDS GCA 90 bp TCATACGGGCCTTTCCACGGCGTACTGGCACGGACTAAGGTTGGCTaGCGGGGGCGGCCCGTGCACAGCGGGGTAGCTGAAGGAGGCGTG +
Preference number: 5 (lower is better)
Translates to: SYGPFHGVLARTKVG*RGRPVHSGVAEGGV
Trigger: CACGCCTCCTTCAGCTACCCCGCTGTGCACGGGCCGCCCCCGGCAGCCAACCTTAGTCCGTGCCAGTACGCCGTGGAAAGGCCCGTATGA
68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000370002.8
ENST00000539804.1
CDS CCA 90 bp GGGCTGCGAAGCCAGAGGCCCCACGTTGACCGAGTTGAAGGCGAATaGAAAGGTCTTGGCGGCGAGCGGCGGGGCAAGAGCCTTGGGCGG +
Preference number: 5 (lower is better)
Translates to: GLRSQRPHVDRVEGE*KGLGGERRGKSLGR
Trigger: CCGCCCAAGGCTCTTGCCCCGCCGCTCGCCGCCAAGACCTTTCCATTCGCCTTCAACTCGGTCAACGTGGGGCCTCTGGCTTCGCAGCCC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000370002.8
ENST00000539804.1
CDS-3UTR CAA 90 bp CCGGGGAGCTGGTCCCTGTTCCTGGCTTTAGTCCCAGGGGCGCGGTCTGTGTGTCTGTGCTCCTGGCCCTaGCAGCCGTGCTCTGGGAGC +
Preference number: 5 (lower is better)
Translates to: PGSWSLFLALVPGARSVCLCSWP*QPCSGS
Trigger: GCTCCCAGAGCACGGCTGCAAGGGCCAGGAGCACAG...ACACACAGACCGCGCCCCTGGGACTAAAGCCAGGAACAGGGACCAGCTCCCCGG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000370002.8
ENST00000539804.1
CDS-3UTR CAA 90 bp CCGGGGAGCTGGTCCCTGTTCCTGGCTTTAGTCCCAGGGGCGCGGTCTGTGTGTGCGAATGGAAAGGTCTaGGCGGCGAGCGGCGGGGCA +
Preference number: 5 (lower is better)
Translates to: PGSWSLFLALVPGARSVCANGKV*AASGGA
Trigger: TGCCCCGCCGCTCGCCGCCAAGACCTTTCCATTCGC...ACACACAGACCGCGCCCCTGGGACTAAAGCCAGGAACAGGGACCAGCTCCCCGG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000370002.8
ENST00000539804.1
CDS-3UTR CAA 90 bp GGGAGGGGAAGCCTGGAGAAGGCGGGATGGGCCAAGGGTGAGTTGGCCCCCGGGGCCAGAGGCCCCACGTaGACCGAGTTGAAGGCGAAT +
Preference number: 5 (lower is better)
Translates to: GRGSLEKAGWAKGELAPGARGPT*TELKAN
Trigger: ATTCGCCTTCAACTCGGTCAACGTGGGGCCTCTGGC...CCCGGGGGCCAACTCACCCTTGGCCCATCCCGCCTTCTCCAGGCTTCCCCTCCC
68% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENST00000370002.8
ENST00000539804.1
CDS CCA 90 bp AGGCGAATGGAAAGGTCTTGGCGGCGAGCGGCGGGGCAAGAGCCTTaGGCGGCCAGTTGCCGTACGAGTAGCCGGGGTACACCTCCTCGT +
Preference number: 5 (lower is better)
Translates to: RRMERSWRRAAGQEP*AASCRTSSRGTPPR
Trigger: ACGAGGAGGTGTACCCCGGCTACTCGTACGGCAACTGGCCGCCCAAGGCTCTTGCCCCGCCGCTCGCCGCCAAGACCTTTCCATTCGCCT
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000370002.8
ENST00000539804.1
CDS-3UTR CAA 90 bp CCGGGGAGCTGGTCCCTGTTCCTGGCTTTAGTCCCAGGGGCGCGGTCTGTGTGTGCCGCGAAGCTGCCTTaGCATAGCTCGGCCTGCTGG +
Preference number: 5 (lower is better)
Translates to: PGSWSLFLALVPGARSVCAAKLP*HSSACW
Trigger: CCAGCAGGCCGAGCTATGCAAAGGCAGCTTCGCGGC...ACACACAGACCGCGCCCCTGGGACTAAAGCCAGGAACAGGGACCAGCTCCCCGG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000370002.8
ENST00000539804.1
CDS GCA 90 bp GGCACCATGGAGGCGGCGATGGAGCTGGGTGGCGAGAAGACGGGCTaGGAAGCCAGAGGCCCCACGTTGACCGAGTTGAAGGCGAATGGA +
Preference number: 5 (lower is better)
Translates to: GTMEAAMELGGEKTG*EARGPTLTELKANG
Trigger: TCCATTCGCCTTCAACTCGGTCAACGTGGGGCCTCTGGCTTCGCAGCCCGTCTTCTCGCCACCCAGCTCCATCGCCGCCTCCATGGTGCC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000370002.8
ENST00000539804.1
CDS-3UTR CAA 90 bp GGAAGCCTGGAGAAGGCGGGATGGGCCAAGGGTGAGTTGGCCCCCGGGGAGCTGCCCACGTTGACCGAGTaGAAGGCGAATGGAAAGGTC +
Preference number: 5 (lower is better)
Translates to: GSLEKAGWAKGELAPGELPTLTE*KANGKV
Trigger: GACCTTTCCATTCGCCTTCAACTCGGTCAACGTGGG...CAGCTCCCCGGGGGCCAACTCACCCTTGGCCCATCCCGCCTTCTCCAGGCTTCC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000370002.8
ENST00000539804.1
CDS-3UTR CAA 90 bp GGAAGCCTGGAGAAGGCGGGATGGGCCAAGGGTGAGTTGGCCCCCGGGGAGCTGTTATTTCATTTATCTTaGAAAACGAGGGAGGGGAAG +
Preference number: 5 (lower is better)
Translates to: GSLEKAGWAKGELAPGELLFHLS*KTREGK
Trigger: CTTCCCCTCCCTCGTTTTCAAAGATAAATGAAATAA...CAGCTCCCCGGGGGCCAACTCACCCTTGGCCCATCCCGCCTTCTCCAGGCTTCC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENST00000370002.8
ENST00000539804.1
CDS-3UTR CAA 90 bp CCGGGGAGCTGGTCCCTGTTCCTGGCTTTAGTCCCAGGGGCGCGGTCTGTGTGTTTATTTCATTTATCTTaGAAAACGAGGGAGGGGAAG +
Preference number: 5 (lower is better)
Translates to: PGSWSLFLALVPGARSVCLFHLS*KTREGK
Trigger: CTTCCCCTCCCTCGTTTTCAAAGATAAATGAAATAA...ACACACAGACCGCGCCCCTGGGACTAAAGCCAGGAACAGGGACCAGCTCCCCGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENST00000370002.8
ENST00000539804.1
CDS CCA 72 bp GCACGGTGCCCGGGGCAGCCGCGGCGGAGGGCACCATaGAGGCGGCGATGGAGCTGGGTGGCGAGAAGACGG +
Preference number: 6 (lower is better)
Translates to: ARCPGQPRRRAP*RRRWSWVARRR
Trigger: CCGTCTTCTCGCCACCCAGCTCCATCGCCGCCTCCATGGTGCCCTCCGCCGCGGCTGCCCCGGGCACCGTGC
76% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000370002.8
ENST00000539804.1
CDS CCA 72 bp GGGCAGCCGCGGCGGAGGGCACCATGGAGGCGGCGATaGAGCTGGGTGGCGAGAAGACGGGCTGCGAAGCCA +
Preference number: 6 (lower is better)
Translates to: GQPRRRAPWRRR*SWVARRRAAKP
Trigger: TGGCTTCGCAGCCCGTCTTCTCGCCACCCAGCTCCATCGCCGCCTCCATGGTGCCCTCCGCCGCGGCTGCCC
74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000370002.8
ENST00000539804.1
CDS CCA 72 bp GGCGGGGCCGCTCATACGGGCCTTTCCACGGCGTACTaGCACGGACTAAGGTTGGCTGCCGGGGGCGGCCCG +
Preference number: 6 (lower is better)
Translates to: GGAAHTGLSTAY*HGLRLAAGGGP
Trigger: CGGGCCGCCCCCGGCAGCCAACCTTAGTCCGTGCCAGTACGCCGTGGAAAGGCCCGTATGAGCGGCCCCGCC
74% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000370002.8
ENST00000539804.1
CDS GCA 72 bp CCTTGCAGCCGTGCTCTGGGAGCTGGGGGTGCGGAGTaGCAGCGTCTGACAGCGACAGGGCAGGGCTCCGGG +
Preference number: 6 (lower is better)
Translates to: PCSRALGAGGAE*QRLTATGQGSG
Trigger: CCCGGAGCCCTGCCCTGTCGCTGTCAGACGCTGGCACTCCGCACCCCCAGCTCCCAGAGCACGGCTGCAAGG
72% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000370002.8
ENST00000539804.1
CDS GCA 72 bp CGGCGAGCGGCGGGGCAAGAGCCTTGGGCGGCCAGTTaGCGTACGAGTAGCCGGGGTACACCTCCTCGTAGG +
Preference number: 6 (lower is better)
Translates to: RRAAGQEPWAAS*RTSSRGTPPRR
Trigger: CCTACGAGGAGGTGTACCCCGGCTACTCGTACGGCAACTGGCCGCCCAAGGCTCTTGCCCCGCCGCTCGCCG
71% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000370002.8
ENST00000539804.1
CDS CCA 72 bp CTGTGCTCCTGGCCCTTGCAGCCGTGCTCTGGGAGCTaGGGGTGCGGAGTGCCAGCGTCTGACAGCGACAGG +
Preference number: 6 (lower is better)
Translates to: LCSWPLQPCSGS*GCGVPASDSDR
Trigger: CCTGTCGCTGTCAGACGCTGGCACTCCGCACCCCCAGCTCCCAGAGCACGGCTGCAAGGGCCAGGAGCACAG
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000370002.8
ENST00000539804.1
CDS CAA 90 bp GCCAGAGGCCCCACGTTGACCGAGTTGAAGGCGAATGGAAAGGTCTaGGCGGCGAGCGGCGGGGCAAGAGCCTTGGGCGGCCAGTTGCCG +
Preference number: 6 (lower is better)
Translates to: ARGPTLTELKANGKV*AASGGARALGGQLP
Trigger: CGGCAACTGGCCGCCCAAGGCTCTTGCCCCGCCGCTCGCCGCCAAGACCTTTCCATTCGCCTTCAACTCGGTCAACGTGGGGCCTCTGGC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000370002.8
ENST00000539804.1
CDS GCA 72 bp CCTTTCCACGGCGTACTGGCACGGACTAAGGTTGGCTaGCGGGGGCGGCCCGTGCACAGCGGGGTAGCTGAA +
Preference number: 6 (lower is better)
Translates to: PFHGVLARTKVG*RGRPVHSGVAE
Trigger: TTCAGCTACCCCGCTGTGCACGGGCCGCCCCCGGCAGCCAACCTTAGTCCGTGCCAGTACGCCGTGGAAAGG
68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000370002.8
ENST00000539804.1
CDS CCA 72 bp GAAAGGTCTTGGCGGCGAGCGGCGGGGCAAGAGCCTTaGGCGGCCAGTTGCCGTACGAGTAGCCGGGGTACA +
Preference number: 6 (lower is better)
Translates to: ERSWRRAAGQEP*AASCRTSSRGT
Trigger: TGTACCCCGGCTACTCGTACGGCAACTGGCCGCCCAAGGCTCTTGCCCCGCCGCTCGCCGCCAAGACCTTTC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000370002.8
ENST00000539804.1
CDS CCA 72 bp CTGCCGCCGCTGCTTCTTTTTCAGCGAACCGTCCTCTaGGGAGCCGCCGGGCAGCGAAGCCGAGGCCTTTTC +
Preference number: 6 (lower is better)
Translates to: LPPLLLFQRTVL*GAAGQRSRGLF
Trigger: GAAAAGGCCTCGGCTTCGCTGCCCGGCGGCTCCCCAGAGGACGGTTCGCTGAAAAAGAAGCAGCGGCGGCAG
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000370002.8
ENST00000539804.1
CDS CAA 72 bp CCCACGTTGACCGAGTTGAAGGCGAATGGAAAGGTCTaGGCGGCGAGCGGCGGGGCAAGAGCCTTGGGCGGC +
Preference number: 6 (lower is better)
Translates to: PTLTELKANGKV*AASGGARALGG
Trigger: GCCGCCCAAGGCTCTTGCCCCGCCGCTCGCCGCCAAGACCTTTCCATTCGCCTTCAACTCGGTCAACGTGGG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000370002.8
ENST00000539804.1
CDS GCA 72 bp TTTTCTGAGTCGCTGTGCTCCTGGCCCTTGCAGCCGTaGTCTGGGAGCTGGGGGTGCGGAGTGCCAGCGTCT +
Preference number: 6 (lower is better)
Translates to: FSESLCSWPLQP*SGSWGCGVPAS
Trigger: AGACGCTGGCACTCCGCACCCCCAGCTCCCAGAGCACGGCTGCAAGGGCCAGGAGCACAGCGACTCAGAAAA
65% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000370002.8
ENST00000539804.1
CDS CCA 72 bp AGCCAGAGGCCCCACGTTGACCGAGTTGAAGGCGAATaGAAAGGTCTTGGCGGCGAGCGGCGGGGCAAGAGC +
Preference number: 6 (lower is better)
Translates to: SQRPHVDRVEGE*KGLGGERRGKS
Trigger: GCTCTTGCCCCGCCGCTCGCCGCCAAGACCTTTCCATTCGCCTTCAACTCGGTCAACGTGGGGCCTCTGGCT
65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000370002.8
ENST00000539804.1
CDS CAA 72 bp ACGGGCTGCGAAGCCAGAGGCCCCACGTTGACCGAGTaGAAGGCGAATGGAAAGGTCTTGGCGGCGAGCGGC +
Preference number: 6 (lower is better)
Translates to: TGCEARGPTLTE*KANGKVLAASG
Trigger: GCCGCTCGCCGCCAAGACCTTTCCATTCGCCTTCAACTCGGTCAACGTGGGGCCTCTGGCTTCGCAGCCCGT
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000370002.8
ENST00000539804.1