RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for PITPNB (Homo sapiens)

Ensembl gene IDs: ENSG00000180957

Ensembl transcript IDs: ENST00000320996.14, ENST00000335272.10, ENST00000415296.5, ENST00000436663.1, ENST00000455418.7, ENST00000460566.5, ENST00000465179.1, ENST00000471825.1, ENST00000477861.1, ENST00000634017.1

Found 314 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp TCCTACTTGAGAGCACATCCCACAGTCAGATGTCCACCAGTCTCTTaGCGGGGCCTCCTCACCGCACGCAGGCCAGACTCACACTGCATC +
Preference number: 1 (lower is better)
Translates to: SYLRAHPTVRCPPVS*RGLLTARRPDSHCI
Trigger: GATGCAGTGTGAGTCTGGCCTGCGTGCGGTGAGGAGGCCCCGCCAAGAGACTGGTGGACATCTGACTGTGGGATGTGCTCTCAAGTAGGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000320996.14
ENST00000335272.10
ENST00000455418.7
3UTR CCA 90 bp GATCCTACACATCCTTCCTTGTCTGATTCACTGAAATCACTCCAGTaGGGGAGGGATGCAGGACATGTGGGAAAACGAGGAGCAGGCAGG +
Preference number: 1 (lower is better)
Translates to: DPTHPSLSDSLKSLQ*GRDAGHVGKRGAGR
Trigger: CCTGCCTGCTCCTCGTTTTCCCACATGTCCTGCATCCCTCCCCCACTGGAGTGATTTCAGTGAATCAGACAAGGAAGGATGTGTAGGATC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000320996.14
ENST00000335272.10
ENST00000455418.7
3UTR TCA 90 bp GAGGAGCAGGCAGGGCAGGACTGTCAGCAAATCAGATTACTAATGTaGTTTGACTGCAGGGGTTGGCGTGTTTTAGGAGGGACAGGAGGT +
Preference number: 1 (lower is better)
Translates to: EEQAGQDCQQIRLLM*FDCRGWRVLGGTGG
Trigger: ACCTCCTGTCCCTCCTAAAACACGCCAACCCCTGCAGTCAAATCACATTAGTAATCTGATTTGCTGACAGTCCTGCCCTGCCTGCTCCTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000320996.14
ENST00000335272.10
ENST00000455418.7
3UTR TCA 90 bp GCAGGCAGGGCAGGACTGTCAGCAAATCAGATTACTAATGTGATTTaGCTGCAGGGGTTGGCGTGTTTTAGGAGGGACAGGAGGTTACAA +
Preference number: 1 (lower is better)
Translates to: AGRAGLSANQITNVI*LQGLACFRRDRRLQ
Trigger: TTGTAACCTCCTGTCCCTCCTAAAACACGCCAACCCCTGCAGTCAAATCACATTAGTAATCTGATTTGCTGACAGTCCTGCCCTGCCTGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000320996.14
ENST00000335272.10
ENST00000455418.7
3UTR TCA 90 bp ATCCATGCGCCGGGCTCTCATTTCCATGTGCGCCTAAGCTCCCAATaGTACTACAGATGCCAGCGAGAGTTAAGTTCATTAAAAGGAGAG +
Preference number: 1 (lower is better)
Translates to: IHAPGSHFHVRLSSQ*YYRCQRELSSLKGE
Trigger: CTCTCCTTTTAATGAACTTAACTCTCGCTGGCATCTGTAGTATCATTGGGAGCTTAGGCGCACATGGAAATGAGAGCCCGGCGCATGGAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000320996.14
ENST00000335272.10
ENST00000455418.7
3UTR CCA 90 bp ATCATCACAAGCACACATCTGGGAAACGTCAACACTGCAAGATACTaGTCAGATTCTTCTTCACTCATCACTGGCTGCGCTTGTTCCCCT +
Preference number: 1 (lower is better)
Translates to: IITSTHLGNVNTARY*SDSSSLITGCACSP
Trigger: AGGGGAACAAGCGCAGCCAGTGATGAGTGAAGAAGAATCTGACCAGTATCTTGCAGTGTTGACGTTTCCCAGATGTGTGCTTGTGATGAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000335272.10
ENST00000455418.7
3UTR GCA 90 bp ATGTGTGTGTATCATCACAAGCACACATCTGGGAAACGTCAACACTaGAAGATACTGGTCAGATTCTTCTTCACTCATCACTGGCTGCGC +
Preference number: 1 (lower is better)
Translates to: MCVYHHKHTSGKRQH*KILVRFFFTHHWLR
Trigger: GCGCAGCCAGTGATGAGTGAAGAAGAATCTGACCAGTATCTTGCAGTGTTGACGTTTCCCAGATGTGTGCTTGTGATGATACACACACAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000335272.10
ENST00000455418.7
3UTR GCA 90 bp TGGATCTGTAGCTCTACATGCGCTTTATATACAGCTACAGACATATaGACACATACATATATACACACGTGGTTGAGAACCTGTGCATGT +
Preference number: 1 (lower is better)
Translates to: WICSSTCALYTATDI*THTYIHTWLRTCAC
Trigger: ACATGCACAGGTTCTCAACCACGTGTGTATATATGTATGTGTGCATATGTCTGTAGCTGTATATAAAGCGCATGTAGAGCTACAGATCCA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000320996.14
ENST00000335272.10
ENST00000455418.7
3UTR TCA 90 bp ATAATCTTCCTCGCACCAAACACTTTGCAGACAATGATTATGCTCTaGCAAAACCTATCTTACAACAGTGCCCAGAGAGTAAACATCAGT +
Preference number: 1 (lower is better)
Translates to: IIFLAPNTLQTMIML*QNLSYNSAQRVNIS
Trigger: ACTGATGTTTACTCTCTGGGCACTGTTGTAAGATAGGTTTTGTCAGAGCATAATCATTGTCTGCAAAGTGTTTGGTGCGAGGAAGATTAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000320996.14
ENST00000335272.10
ENST00000455418.7
3UTR CAA 90 bp GTCCTACTTGAGAGCACATCCCACAGTCAGATGTCCACCAGTCTCTaGGCGGGGCCTCCTCACCGCACGCAGGCCAGACTCACACTGCAT +
Preference number: 2 (lower is better)
Translates to: VLLESTSHSQMSTSL*AGPPHRTQARLTLH
Trigger: ATGCAGTGTGAGTCTGGCCTGCGTGCGGTGAGGAGGCCCCGCCAAGAGACTGGTGGACATCTGACTGTGGGATGTGCTCTCAAGTAGGAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000320996.14
ENST00000335272.10
ENST00000455418.7
3UTR-3UTR CCA 90 bp CAGTCAGATGTCCACCAGTCTCTTGGCGGGGCCTCCTCACCGCACGCAGGCCAGTTCTTCACTCATCACTaGCTGCGCTTGTTCCCCTCA +
Preference number: 2 (lower is better)
Translates to: QSDVHQSLGGASSPHAGQFFTHH*LRLFPS
Trigger: TGAGGGGAACAAGCGCAGCCAGTGATGAGTGAAGAA...CTGGCCTGCGTGCGGTGAGGAGGCCCCGCCAAGAGACTGGTGGACATCTGACTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000335272.10
ENST00000455418.7
3UTR-3UTR GCA 90 bp AGTGGGGGAGGGATGCAGGACATGTGGGAAAACGAGGAGCAGGCAGGGCAGGACGGGAAACGTCAACACTaGAAGATACTGGTCAGATTC +
Preference number: 2 (lower is better)
Translates to: SGGGMQDMWENEEQAGQDGKRQH*KILVRF
Trigger: GAATCTGACCAGTATCTTGCAGTGTTGACGTTTCCC...GTCCTGCCCTGCCTGCTCCTCGTTTTCCCACATGTCCTGCATCCCTCCCCCACT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000320996.14
ENST00000335272.10
ENST00000455418.7
3UTR-3UTR GCA 90 bp TCAGATGTCCACCAGTCTCTTGGCGGGGCCTCCTCACCGCACGCAGGCCAGACTCAAGACTCCATGAAGTaGTATATTTCCAACTTTTCT +
Preference number: 2 (lower is better)
Translates to: SDVHQSLGGASSPHAGQTQDSMK*YISNFS
Trigger: AGAAAAGTTGGAAATATAGCACTTCATGGAGTCTTG...AGTCTGGCCTGCGTGCGGTGAGGAGGCCCCGCCAAGAGACTGGTGGACATCTGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000320996.14
ENST00000335272.10
ENST00000455418.7
3UTR CAA 90 bp CACTCTCATGATGCCTATTCAGAATCTGTCCTGATGACGTCCTACTaGAGAGCACATCCCACAGTCAGATGTCCACCAGTCTCTTGGCGG +
Preference number: 2 (lower is better)
Translates to: HSHDAYSESVLMTSY*RAHPTVRCPPVSWR
Trigger: CCGCCAAGAGACTGGTGGACATCTGACTGTGGGATGTGCTCTCAAGTAGGACGTCATCAGGACAGATTCTGAATAGGCATCATGAGAGTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000320996.14
ENST00000335272.10
ENST00000455418.7
3UTR-3UTR TCA 90 bp CTCTTGGCGGGGCCTCCTCACCGCACGCAGGCCAGACTCACACTGCATCTTAAACAAAACAAGACTCCATaGAGTGCTATATTTCCAACT +
Preference number: 2 (lower is better)
Translates to: LLAGPPHRTQARLTLHLKQNKTP*SAIFPT
Trigger: AGTTGGAAATATAGCACTTCATGGAGTCTTGTTTTG...TTTAAGATGCAGTGTGAGTCTGGCCTGCGTGCGGTGAGGAGGCCCCGCCAAGAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000320996.14
ENST00000335272.10
ENST00000455418.7
3UTR-3UTR GCA 90 bp TGGCGGGGCCTCCTCACCGCACGCAGGCCAGACTCACACTGCATCTTAAACTGTATCTGTAGCTCTACATaGGCTTTATATACAGCTACA +
Preference number: 2 (lower is better)
Translates to: WRGLLTARRPDSHCILNCICSST*ALYTAT
Trigger: TGTAGCTGTATATAAAGCGCATGTAGAGCTACAGAT...ACAGTTTAAGATGCAGTGTGAGTCTGGCCTGCGTGCGGTGAGGAGGCCCCGCCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000320996.14
ENST00000335272.10
ENST00000455418.7
3UTR-3UTR CCA 90 bp ATGTGGGTTTTGTTGCTGAGGATAACAGGGTATTGCAATGCAGTAGTGATCCTATGTCCACCAGTCTCTTaGCGGGGCCTCCTCACCGCA +
Preference number: 2 (lower is better)
Translates to: MWVLLLRITGYCNAVVILCPPVS*RGLLTA
Trigger: TGCGGTGAGGAGGCCCCGCCAAGAGACTGGTGGACA...TAGGATCACTACTGCATTGCAATACCCTGTTATCCTCAGCAACAAAACCCACAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000320996.14
ENST00000335272.10
ENST00000455418.7
3UTR-3UTR CCA 90 bp GTTTTGTTGCTGAGGATAACAGGGTATTGCAATGCAGTAGTGATCCTACACATCTGTCCACCAGTCTCTTaGCGGGGCCTCCTCACCGCA +
Preference number: 2 (lower is better)
Translates to: VLLLRITGYCNAVVILHICPPVS*RGLLTA
Trigger: TGCGGTGAGGAGGCCCCGCCAAGAGACTGGTGGACA...GATGTGTAGGATCACTACTGCATTGCAATACCCTGTTATCCTCAGCAACAAAAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000320996.14
ENST00000335272.10
ENST00000455418.7
3UTR-3UTR CCA 90 bp ATGTGGGAAAACGAGGAGCAGGCAGGGCAGGACTGTCAGCAAATCAGATTACTATTCTTCACTCATCACTaGCTGCGCTTGTTCCCCTCA +
Preference number: 2 (lower is better)
Translates to: MWENEEQAGQDCQQIRLLFFTHH*LRLFPS
Trigger: TGAGGGGAACAAGCGCAGCCAGTGATGAGTGAAGAA...TAGTAATCTGATTTGCTGACAGTCCTGCCCTGCCTGCTCCTCGTTTTCCCACAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000335272.10
ENST00000455418.7
3UTR-3UTR CCA 90 bp ATCCTGAGTACACAAAGGATGTATGAAATGTGGGTTTTGTTGCTGAGGATAACATGTCCACCAGTCTCTTaGCGGGGCCTCCTCACCGCA +
Preference number: 2 (lower is better)
Translates to: ILSTQRMYEMWVLLLRITCPPVS*RGLLTA
Trigger: TGCGGTGAGGAGGCCCCGCCAAGAGACTGGTGGACA...TGTTATCCTCAGCAACAAAACCCACATTTCATACATCCTTTGTGTACTCAGGAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000320996.14
ENST00000335272.10
ENST00000455418.7
3UTR CAA 90 bp GATAACAGGGTATTGCAATGCAGTAGTGATCCTACACATCCTTCCTaGTCTGATTCACTGAAATCACTCCAGTGGGGGAGGGATGCAGGA +
Preference number: 2 (lower is better)
Translates to: DNRVLQCSSDPTHPS*SDSLKSLQWGRDAG
Trigger: TCCTGCATCCCTCCCCCACTGGAGTGATTTCAGTGAATCAGACAAGGAAGGATGTGTAGGATCACTACTGCATTGCAATACCCTGTTATC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000320996.14
ENST00000335272.10
ENST00000455418.7
3UTR-3UTR CCA 90 bp GACATGTGGGAAAACGAGGAGCAGGCAGGGCAGGACTGTCAGCAAATCAGATTAACAAGTGTGTGTATCTaGATCTGTAGCTCTACATGC +
Preference number: 2 (lower is better)
Translates to: DMWENEEQAGQDCQQIRLTSVCI*ICSSTC
Trigger: GCATGTAGAGCTACAGATCCAGATACACACACTTGT...TAATCTGATTTGCTGACAGTCCTGCCCTGCCTGCTCCTCGTTTTCCCACATGTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000320996.14
ENST00000335272.10
ENST00000455418.7
3UTR-3UTR GCA 90 bp CAAGTGTGTGTATCTGGATCTGTAGCTCTACATGCGCTTTATATACAGCTACAGTCACTCATCACTGGCTaGGCTTGTTCCCCTCACTTG +
Preference number: 2 (lower is better)
Translates to: QVCVSGSVALHALYIQLQSLITG*ACSPHL
Trigger: CAAGTGAGGGGAACAAGCGCAGCCAGTGATGAGTGA...CTGTAGCTGTATATAAAGCGCATGTAGAGCTACAGATCCAGATACACACACTTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000335272.10
ENST00000455418.7
3UTR-3UTR CCA 90 bp ATCTGTCCTGATGACGTCCTACTTGAGAGCACATCCCACAGTCAGATGTCCACCACATATATACACACGTaGTTGAGAACCTGTGCATGT +
Preference number: 2 (lower is better)
Translates to: ICPDDVLLESTSHSQMSTTYIHT*LRTCAC
Trigger: ACATGCACAGGTTCTCAACCACGTGTGTATATATGT...GGTGGACATCTGACTGTGGGATGTGCTCTCAAGTAGGACGTCATCAGGACAGAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000320996.14
ENST00000335272.10
ENST00000455418.7
3UTR CAA 90 bp TGCAAGATACTGGTCAGATTCTTCTTCACTCATCACTGGCTGCGCTaGTTCCCCTCACTTGACCTTGATTACGTAAACAGTTTGACATTG +
Preference number: 2 (lower is better)
Translates to: CKILVRFFFTHHWLR*FPSLDLDYVNSLTL
Trigger: CAATGTCAAACTGTTTACGTAATCAAGGTCAAGTGAGGGGAACAAGCGCAGCCAGTGATGAGTGAAGAAGAATCTGACCAGTATCTTGCA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000335272.10
ENST00000455418.7
ENST00000634017.1
3UTR-3UTR TCA 90 bp ATTCAAGCTTCCAGGACTGACAGAGGAAAAACTGGATTCAGACAGAGAAAGCTGCTATATCCTATCATGTaGGCTCTGAGGAATCTAGAC +
Preference number: 2 (lower is better)
Translates to: IQASRTDRGKTGFRQRKLLYPIM*ALRNLD
Trigger: GTCTAGATTCCTCAGAGCTCACATGATAGGATATAG...CAGCTTTCTCTGTCTGAATCCAGTTTTTCCTCTGTCAGTCCTGGAAGCTTGAAT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000320996.14
ENST00000335272.10
ENST00000455418.7
3UTR-3UTR TCA 90 bp AACAGGGTATTGCAATGCAGTAGTGATCCTACACATCCTTCCTTGTCTGATTCATCAAGCTTCCAGGACTaGCAGAGGAAAAACTGGATT +
Preference number: 2 (lower is better)
Translates to: NRVLQCSSDPTHPSLSDSSSFQD*QRKNWI
Trigger: AATCCAGTTTTTCCTCTGTCAGTCCTGGAAGCTTGA...TGAATCAGACAAGGAAGGATGTGTAGGATCACTACTGCATTGCAATACCCTGTT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000320996.14
ENST00000335272.10
ENST00000455418.7
3UTR-3UTR CCA 90 bp AACAGGGTATTGCAATGCAGTAGTGATCCTACACATCCTTCCTTGTCTGATTCATCACAAGCACACATCTaGGAAACGTCAACACTGCAA +
Preference number: 2 (lower is better)
Translates to: NRVLQCSSDPTHPSLSDSSQAHI*ETSTLQ
Trigger: TTGCAGTGTTGACGTTTCCCAGATGTGTGCTTGTGA...TGAATCAGACAAGGAAGGATGTGTAGGATCACTACTGCATTGCAATACCCTGTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000320996.14
ENST00000335272.10
ENST00000455418.7
3UTR-3UTR CCA 90 bp ATGTGGGTTTTGTTGCTGAGGATAACAGGGTATTGCAATGCAGTAGTGATCCTATCACAAGCACACATCTaGGAAACGTCAACACTGCAA +
Preference number: 2 (lower is better)
Translates to: MWVLLLRITGYCNAVVILSQAHI*ETSTLQ
Trigger: TTGCAGTGTTGACGTTTCCCAGATGTGTGCTTGTGA...TAGGATCACTACTGCATTGCAATACCCTGTTATCCTCAGCAACAAAACCCACAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000320996.14
ENST00000335272.10
ENST00000455418.7
3UTR-3UTR CCA 90 bp GTCACTATCTCCTCCTTGAAGTGTGTGTTCCCACAAGAAGAGCAAAATGTCATCACAAGTGTGTGTATCTaGATCTGTAGCTCTACATGC +
Preference number: 2 (lower is better)
Translates to: VTISSLKCVFPQEEQNVITSVCI*ICSSTC
Trigger: GCATGTAGAGCTACAGATCCAGATACACACACTTGT...GATGACATTTTGCTCTTCTTGTGGGAACACACACTTCAAGGAGGAGATAGTGAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000320996.14
ENST00000335272.10
ENST00000455418.7
3UTR-3UTR CCA 90 bp ATTCTATTCAAGCTTCCAGGACTGACAGAGGAAAAACTGGATTCAGACAGAGAATCACAAGCACACATCTaGGAAACGTCAACACTGCAA +
Preference number: 2 (lower is better)
Translates to: ILFKLPGLTEEKLDSDRESQAHI*ETSTLQ
Trigger: TTGCAGTGTTGACGTTTCCCAGATGTGTGCTTGTGA...TTCTCTGTCTGAATCCAGTTTTTCCTCTGTCAGTCCTGGAAGCTTGAATAGAAT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000320996.14
ENST00000335272.10
ENST00000455418.7
3UTR CAA 90 bp GTCTTTATCCTGAGTACACAAAGGATGTATGAAATGTGGGTTTTGTaGCTGAGGATAACAGGGTATTGCAATGCAGTAGTGATCCTACAC +
Preference number: 2 (lower is better)
Translates to: VFILSTQRMYEMWVL*LRITGYCNAVVILH
Trigger: GTGTAGGATCACTACTGCATTGCAATACCCTGTTATCCTCAGCAACAAAACCCACATTTCATACATCCTTTGTGTACTCAGGATAAAGAC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000320996.14
ENST00000335272.10
ENST00000455418.7
3UTR CAA 90 bp TCAGTCTTTATCCTGAGTACACAAAGGATGTATGAAATGTGGGTTTaGTTGCTGAGGATAACAGGGTATTGCAATGCAGTAGTGATCCTA +
Preference number: 2 (lower is better)
Translates to: SVFILSTQRMYEMWV*LLRITGYCNAVVIL
Trigger: TAGGATCACTACTGCATTGCAATACCCTGTTATCCTCAGCAACAAAACCCACATTTCATACATCCTTTGTGTACTCAGGATAAAGACTGA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000320996.14
ENST00000335272.10
ENST00000455418.7
3UTR-3UTR TCA 90 bp ACTAGGTATTTTACATTCACCACACATTCCCTCAAATCTCCACAGTTGTTAGAAATATACACACGTGGTTaGGAACCTGTGCATGTGTGT +
Preference number: 2 (lower is better)
Translates to: TRYFTFTTHSLKSPQLLEIYTRG*EPVHVC
Trigger: ACACACATGCACAGGTTCTCAACCACGTGTGTATAT...TTCTAACAACTGTGGAGATTTGAGGGAATGTGTGGTGAATGTAAAATACCTAGT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000320996.14
ENST00000335272.10
ENST00000455418.7
3UTR-3UTR GCA 90 bp TTTCACAAAATTAGCAATAATCTTCCTCGCACCAAACACTTTGCAGACAATGATGGGAAACGTCAACACTaGAAGATACTGGTCAGATTC +
Preference number: 2 (lower is better)
Translates to: FHKISNNLPRTKHFADNDGKRQH*KILVRF
Trigger: GAATCTGACCAGTATCTTGCAGTGTTGACGTTTCCC...ATCATTGTCTGCAAAGTGTTTGGTGCGAGGAAGATTATTGCTAATTTTGTGAAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000320996.14
ENST00000335272.10
ENST00000455418.7
3UTR-3UTR GCA 90 bp ATTCTATTCAAGCTTCCAGGACTGACAGAGGAAAAACTGGATTCAGACAGAGAAATCTGTAGCTCTACATaGGCTTTATATACAGCTACA +
Preference number: 2 (lower is better)
Translates to: ILFKLPGLTEEKLDSDREICSST*ALYTAT
Trigger: TGTAGCTGTATATAAAGCGCATGTAGAGCTACAGAT...TTCTCTGTCTGAATCCAGTTTTTCCTCTGTCAGTCCTGGAAGCTTGAATAGAAT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000320996.14
ENST00000335272.10
ENST00000455418.7
3UTR-3UTR CCA 90 bp GTTTTGTTGCTGAGGATAACAGGGTATTGCAATGCAGTAGTGATCCTACACATCATAGGTACAGTACTTTaGAGAAATTGTACTAATCCC +
Preference number: 2 (lower is better)
Translates to: VLLLRITGYCNAVVILHIIGTVL*RNCTNP
Trigger: GGGATTAGTACAATTTCTCCAAAGTACTGTACCTAT...GATGTGTAGGATCACTACTGCATTGCAATACCCTGTTATCCTCAGCAACAAAAC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000320996.14
ENST00000335272.10
ENST00000455418.7
3UTR-3UTR CCA 90 bp ATGTGGGTTTTGTTGCTGAGGATAACAGGGTATTGCAATGCAGTAGTGATCCTAATAGGTACAGTACTTTaGAGAAATTGTACTAATCCC +
Preference number: 2 (lower is better)
Translates to: MWVLLLRITGYCNAVVILIGTVL*RNCTNP
Trigger: GGGATTAGTACAATTTCTCCAAAGTACTGTACCTAT...TAGGATCACTACTGCATTGCAATACCCTGTTATCCTCAGCAACAAAACCCACAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000320996.14
ENST00000335272.10
ENST00000455418.7
3UTR-3UTR GCA 90 bp ACTAGGTATTTTACATTCACCACACATTCCCTCAAATCTCCACAGTTGTTAGAAAACAGGGTATTGCAATaGAGTAGTGATCCTACACAT +
Preference number: 2 (lower is better)
Translates to: TRYFTFTTHSLKSPQLLENRVLQ*SSDPTH
Trigger: ATGTGTAGGATCACTACTGCATTGCAATACCCTGTT...TTCTAACAACTGTGGAGATTTGAGGGAATGTGTGGTGAATGTAAAATACCTAGT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000320996.14
ENST00000335272.10
ENST00000455418.7
3UTR-3UTR CCA 90 bp CTGAAGATAGGTACAGTACTTTGGAGAAATTGTACTAATCCCTTCAGTATGTCTACATATATACACACGTaGTTGAGAACCTGTGCATGT +
Preference number: 2 (lower is better)
Translates to: LKIGTVLWRNCTNPFSMSTYIHT*LRTCAC
Trigger: ACATGCACAGGTTCTCAACCACGTGTGTATATATGT...AGACATACTGAAGGGATTAGTACAATTTCTCCAAAGTACTGTACCTATCTTCAG
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000320996.14
ENST00000335272.10
ENST00000455418.7
3UTR CAA 90 bp AGGATTTTTCCCTCAGGGCAAACAAGTAAAAACTGGCCTGTAACTTaGCTCCTTACTTTATATTGTCAAATTTGGCTACAAGATAATGAC +
Preference number: 2 (lower is better)
Translates to: RIFPSGQTSKNWPVT*LLTLYCQIWLQDND
Trigger: GTCATTATCTTGTAGCCAAATTTGACAATATAAAGTAAGGAGCAAAGTTACAGGCCAGTTTTTACTTGTTTGCCCTGAGGGAAAAATCCT
37% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENST00000320996.14
ENST00000335272.10
ENST00000455418.7
3UTR-3UTR TCA 90 bp CACAAAATTAGCAATAATCTTCCTCGCACCAAACACTTTGCAGACAATGATTATCAAAACAAGACTCCATaGAGTGCTATATTTCCAACT +
Preference number: 2 (lower is better)
Translates to: HKISNNLPRTKHFADNDYQNKTP*SAIFPT
Trigger: AGTTGGAAATATAGCACTTCATGGAGTCTTGTTTTG...ATAATCATTGTCTGCAAAGTGTTTGGTGCGAGGAAGATTATTGCTAATTTTGTG
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000320996.14
ENST00000335272.10
ENST00000455418.7
3UTR-3UTR TCA 90 bp CACAAAATTAGCAATAATCTTCCTCGCACCAAACACTTTGCAGACAATGATTATAGACAGTTTGTGACCTaGAGGCTTCAACAATATAAT +
Preference number: 2 (lower is better)
Translates to: HKISNNLPRTKHFADNDYRQFVT*RLQQYN
Trigger: ATTATATTGTTGAAGCCTTCAGGTCACAAACTGTCT...ATAATCATTGTCTGCAAAGTGTTTGGTGCGAGGAAGATTATTGCTAATTTTGTG
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000320996.14
ENST00000335272.10
ENST00000455418.7
3UTR-3UTR CCA 90 bp ACTAGGTATTTTACATTCACCACACATTCCCTCAAATCTCCACAGTTGTTAGAAATAGGTACAGTACTTTaGAGAAATTGTACTAATCCC +
Preference number: 2 (lower is better)
Translates to: TRYFTFTTHSLKSPQLLEIGTVL*RNCTNP
Trigger: GGGATTAGTACAATTTCTCCAAAGTACTGTACCTAT...TTCTAACAACTGTGGAGATTTGAGGGAATGTGTGGTGAATGTAAAATACCTAGT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000320996.14
ENST00000335272.10
ENST00000455418.7
3UTR-3UTR GCA 90 bp CACAAAATTAGCAATAATCTTCCTCGCACCAAACACTTTGCAGACAATGATTATCAAGACTCCATGAAGTaGTATATTTCCAACTTTTCT +
Preference number: 2 (lower is better)
Translates to: HKISNNLPRTKHFADNDYQDSMK*YISNFS
Trigger: AGAAAAGTTGGAAATATAGCACTTCATGGAGTCTTG...ATAATCATTGTCTGCAAAGTGTTTGGTGCGAGGAAGATTATTGCTAATTTTGTG
34% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000320996.14
ENST00000335272.10
ENST00000455418.7
3UTR-3UTR CAA 90 bp TCCACCAGTCTCTTGGCGGGGCCTCCTCACCGCACGCAGGCCAGACTCACACTGCATCACTGGCTGCGCTaGTTCCCCTCACTTGACCTT +
Preference number: 3 (lower is better)
Translates to: STSLLAGPPHRTQARLTLHHWLR*FPSLDL
Trigger: AAGGTCAAGTGAGGGGAACAAGCGCAGCCAGTGATG...CAGTGTGAGTCTGGCCTGCGTGCGGTGAGGAGGCCCCGCCAAGAGACTGGTGGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000335272.10
ENST00000455418.7
3UTR-3UTR CAA 90 bp CCAGTGGGGGAGGGATGCAGGACATGTGGGAAAACGAGGAGCAGGCAGGGCAGGTATATACACACGTGGTaGAGAACCTGTGCATGTGTG +
Preference number: 3 (lower is better)
Translates to: PVGEGCRTCGKTRSRQGRYIHTW*RTCACV
Trigger: CACACATGCACAGGTTCTCAACCACGTGTGTATATA...CCTGCCCTGCCTGCTCCTCGTTTTCCCACATGTCCTGCATCCCTCCCCCACTGG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000320996.14
ENST00000335272.10
ENST00000455418.7
3UTR-3UTR CAA 90 bp CTCTTGGCGGGGCCTCCTCACCGCACGCAGGCCAGACTCACACTGCATCTTAAAGTAAACAGTTTGACATaGTCTCTGACCCTACAGGGG +
Preference number: 3 (lower is better)
Translates to: LLAGPPHRTQARLTLHLKVNSLT*SLTLQG
Trigger: CCCCTGTAGGGTCAGAGACAATGTCAAACTGTTTAC...TTTAAGATGCAGTGTGAGTCTGGCCTGCGTGCGGTGAGGAGGCCCCGCCAAGAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000335272.10
ENST00000455418.7
3UTR-3UTR CAA 90 bp TCAGATGTCCACCAGTCTCTTGGCGGGGCCTCCTCACCGCACGCAGGCCAGACTAGGAATCTAGACCATTaGCATAGTTTCCAAGCTGTA +
Preference number: 3 (lower is better)
Translates to: SDVHQSLGGASSPHAGQTRNLDH*HSFQAV
Trigger: TACAGCTTGGAAACTATGCAAATGGTCTAGATTCCT...AGTCTGGCCTGCGTGCGGTGAGGAGGCCCCGCCAAGAGACTGGTGGACATCTGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000320996.14
ENST00000335272.10
ENST00000455418.7
3UTR-3UTR CAA 90 bp TCAGATGTCCACCAGTCTCTTGGCGGGGCCTCCTCACCGCACGCAGGCCAGACTCCAGCTAGTATTACATaGCAGTCAATTTGTCCATTA +
Preference number: 3 (lower is better)
Translates to: SDVHQSLGGASSPHAGQTPASIT*QSICPL
Trigger: TAATGGACAAATTGACTGCAATGTAATACTAGCTGG...AGTCTGGCCTGCGTGCGGTGAGGAGGCCCCGCCAAGAGACTGGTGGACATCTGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000320996.14
ENST00000335272.10
ENST00000455418.7
3UTR-3UTR CAA 90 bp ATGTCCACCAGTCTCTTGGCGGGGCCTCCTCACCGCACGCAGGCCAGACTCACAAACTGGCCTGTAACTTaGCTCCTTACTTTATATTGT +
Preference number: 3 (lower is better)
Translates to: MSTSLLAGPPHRTQARLTNWPVT*LLTLYC
Trigger: ACAATATAAAGTAAGGAGCAAAGTTACAGGCCAGTT...TGTGAGTCTGGCCTGCGTGCGGTGAGGAGGCCCCGCCAAGAGACTGGTGGACAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000320996.14
ENST00000335272.10
ENST00000455418.7
3UTR TCA 72 bp GCAGGGCAGGACTGTCAGCAAATCAGATTACTAATGTaGTTTGACTGCAGGGGTTGGCGTGTTTTAGGAGGG +
Preference number: 3 (lower is better)
Translates to: AGQDCQQIRLLM*FDCRGWRVLGG
Trigger: CCCTCCTAAAACACGCCAACCCCTGCAGTCAAATCACATTAGTAATCTGATTTGCTGACAGTCCTGCCCTGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000320996.14
ENST00000335272.10
ENST00000455418.7
3UTR-3UTR CAA 90 bp GTCACTATCTCCTCCTTGAAGTGTGTGTTCCCACAAGAAGAGCAAAATGTCATCCATCACTGGCTGCGCTaGTTCCCCTCACTTGACCTT +
Preference number: 3 (lower is better)
Translates to: VTISSLKCVFPQEEQNVIHHWLR*FPSLDL
Trigger: AAGGTCAAGTGAGGGGAACAAGCGCAGCCAGTGATG...GATGACATTTTGCTCTTCTTGTGGGAACACACACTTCAAGGAGGAGATAGTGAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000335272.10
ENST00000455418.7
3UTR-3UTR CAA 90 bp ATGTGGGAAAACGAGGAGCAGGCAGGGCAGGACTGTCAGCAAATCAGATTACTAGTCACTATCTCCTCCTaGAAGTGTGTGTTCCCACAA +
Preference number: 3 (lower is better)
Translates to: MWENEEQAGQDCQQIRLLVTISS*KCVFPQ
Trigger: TTGTGGGAACACACACTTCAAGGAGGAGATAGTGAC...TAGTAATCTGATTTGCTGACAGTCCTGCCCTGCCTGCTCCTCGTTTTCCCACAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000320996.14
ENST00000335272.10
ENST00000455418.7
3UTR-3UTR CAA 90 bp ACTAGGTATTTTACATTCACCACACATTCCCTCAAATCTCCACAGTTGTTAGAAATGTCCACCAGTCTCTaGGCGGGGCCTCCTCACCGC +
Preference number: 3 (lower is better)
Translates to: TRYFTFTTHSLKSPQLLEMSTSL*AGPPHR
Trigger: GCGGTGAGGAGGCCCCGCCAAGAGACTGGTGGACAT...TTCTAACAACTGTGGAGATTTGAGGGAATGTGTGGTGAATGTAAAATACCTAGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000320996.14
ENST00000335272.10
ENST00000455418.7
3UTR TCA 72 bp GCAGGACTGTCAGCAAATCAGATTACTAATGTGATTTaGCTGCAGGGGTTGGCGTGTTTTAGGAGGGACAGG +
Preference number: 3 (lower is better)
Translates to: AGLSANQITNVI*LQGLACFRRDR
Trigger: CCTGTCCCTCCTAAAACACGCCAACCCCTGCAGTCAAATCACATTAGTAATCTGATTTGCTGACAGTCCTGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000320996.14
ENST00000335272.10
ENST00000455418.7
3UTR TCA 72 bp CCGGGCTCTCATTTCCATGTGCGCCTAAGCTCCCAATaGTACTACAGATGCCAGCGAGAGTTAAGTTCATTA +
Preference number: 3 (lower is better)
Translates to: PGSHFHVRLSSQ*YYRCQRELSSL
Trigger: TAATGAACTTAACTCTCGCTGGCATCTGTAGTATCATTGGGAGCTTAGGCGCACATGGAAATGAGAGCCCGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000320996.14
ENST00000335272.10
ENST00000455418.7
3UTR CCA 72 bp AGCACACATCTGGGAAACGTCAACACTGCAAGATACTaGTCAGATTCTTCTTCACTCATCACTGGCTGCGCT +
Preference number: 3 (lower is better)
Translates to: STHLGNVNTARY*SDSSSLITGCA
Trigger: AGCGCAGCCAGTGATGAGTGAAGAAGAATCTGACCAGTATCTTGCAGTGTTGACGTTTCCCAGATGTGTGCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000335272.10
ENST00000455418.7
3UTR-3UTR CAA 90 bp CACTGCAAGATACTGGTCAGATTCTTCTTCACTCATCACTGGCTGCGCTTGTTCGTAAACAGTTTGACATaGTCTCTGACCCTACAGGGG +
Preference number: 3 (lower is better)
Translates to: HCKILVRFFFTHHWLRLFVNSLT*SLTLQG
Trigger: CCCCTGTAGGGTCAGAGACAATGTCAAACTGTTTAC...GAACAAGCGCAGCCAGTGATGAGTGAAGAAGAATCTGACCAGTATCTTGCAGTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000335272.10
ENST00000455418.7
ENST00000634017.1
3UTR-3UTR CAA 90 bp CAGGACATGTGGGAAAACGAGGAGCAGGCAGGGCAGGACTGTCAGCAAATCAGAAACTGGCCTGTAACTTaGCTCCTTACTTTATATTGT +
Preference number: 3 (lower is better)
Translates to: QDMWENEEQAGQDCQQIRNWPVT*LLTLYC
Trigger: ACAATATAAAGTAAGGAGCAAAGTTACAGGCCAGTT...TCTGATTTGCTGACAGTCCTGCCCTGCCTGCTCCTCGTTTTCCCACATGTCCTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000320996.14
ENST00000335272.10
ENST00000455418.7
3UTR-3UTR CAA 90 bp CACAAAATTAGCAATAATCTTCCTCGCACCAAACACTTTGCAGACAATGATTATATGTCCACCAGTCTCTaGGCGGGGCCTCCTCACCGC +
Preference number: 3 (lower is better)
Translates to: HKISNNLPRTKHFADNDYMSTSL*AGPPHR
Trigger: GCGGTGAGGAGGCCCCGCCAAGAGACTGGTGGACAT...ATAATCATTGTCTGCAAAGTGTTTGGTGCGAGGAAGATTATTGCTAATTTTGTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000320996.14
ENST00000335272.10
ENST00000455418.7
3UTR-3UTR CAA 90 bp ATTCAAGCTTCCAGGACTGACAGAGGAAAAACTGGATTCAGACAGAGAAAGCTGCTGATGACGTCCTACTaGAGAGCACATCCCACAGTC +
Preference number: 3 (lower is better)
Translates to: IQASRTDRGKTGFRQRKLLMTSY*RAHPTV
Trigger: GACTGTGGGATGTGCTCTCAAGTAGGACGTCATCAG...CAGCTTTCTCTGTCTGAATCCAGTTTTTCCTCTGTCAGTCCTGGAAGCTTGAAT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000320996.14
ENST00000335272.10
ENST00000455418.7
3UTR-3UTR CAA 90 bp GTGGCAGCCGTTTCTGACCAGCACTCTCATGATGCCTATTCAGAATCTGTCCTGAACTGGCCTGTAACTTaGCTCCTTACTTTATATTGT +
Preference number: 3 (lower is better)
Translates to: VAAVSDQHSHDAYSESVLNWPVT*LLTLYC
Trigger: ACAATATAAAGTAAGGAGCAAAGTTACAGGCCAGTT...CAGGACAGATTCTGAATAGGCATCATGAGAGTGCTGGTCAGAAACGGCTGCCAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000320996.14
ENST00000335272.10
ENST00000455418.7
3UTR-3UTR CAA 90 bp ATGTGGGAAAACGAGGAGCAGGCAGGGCAGGACTGTCAGCAAATCAGATTACTAAGGAATCTAGACCATTaGCATAGTTTCCAAGCTGTA +
Preference number: 3 (lower is better)
Translates to: MWENEEQAGQDCQQIRLLRNLDH*HSFQAV
Trigger: TACAGCTTGGAAACTATGCAAATGGTCTAGATTCCT...TAGTAATCTGATTTGCTGACAGTCCTGCCCTGCCTGCTCCTCGTTTTCCCACAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000320996.14
ENST00000335272.10
ENST00000455418.7
3UTR-3UTR CAA 90 bp CACTGCAAGATACTGGTCAGATTCTTCTTCACTCATCACTGGCTGCGCTTGTTCGATTACGTAAACAGTTaGACATTGTCTCTGACCCTA +
Preference number: 3 (lower is better)
Translates to: HCKILVRFFFTHHWLRLFDYVNS*TLSLTL
Trigger: TAGGGTCAGAGACAATGTCAAACTGTTTACGTAATC...GAACAAGCGCAGCCAGTGATGAGTGAAGAAGAATCTGACCAGTATCTTGCAGTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000335272.10
ENST00000455418.7
ENST00000634017.1
3UTR GCA 72 bp GTGGGTTTTGTTGCTGAGGATAACAGGGTATTGCAATaGAGTAGTGATCCTACACATCCTTCCTTGTCTGAT +
Preference number: 3 (lower is better)
Translates to: VGFVAEDNRVLQ*SSDPTHPSLSD
Trigger: ATCAGACAAGGAAGGATGTGTAGGATCACTACTGCATTGCAATACCCTGTTATCCTCAGCAACAAAACCCAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000320996.14
ENST00000335272.10
ENST00000455418.7
3UTR-3UTR CAA 90 bp ACTAGGTATTTTACATTCACCACACATTCCCTCAAATCTCCACAGTTGTTAGAACTGATGACGTCCTACTaGAGAGCACATCCCACAGTC +
Preference number: 3 (lower is better)
Translates to: TRYFTFTTHSLKSPQLLELMTSY*RAHPTV
Trigger: GACTGTGGGATGTGCTCTCAAGTAGGACGTCATCAG...TTCTAACAACTGTGGAGATTTGAGGGAATGTGTGGTGAATGTAAAATACCTAGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000320996.14
ENST00000335272.10
ENST00000455418.7
3UTR TCA 72 bp CTCGCACCAAACACTTTGCAGACAATGATTATGCTCTaGCAAAACCTATCTTACAACAGTGCCCAGAGAGTA +
Preference number: 3 (lower is better)
Translates to: LAPNTLQTMIML*QNLSYNSAQRV
Trigger: TACTCTCTGGGCACTGTTGTAAGATAGGTTTTGTCAGAGCATAATCATTGTCTGCAAAGTGTTTGGTGCGAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000320996.14
ENST00000335272.10
ENST00000455418.7
3UTR GCA 72 bp TATCATCACAAGCACACATCTGGGAAACGTCAACACTaGAAGATACTGGTCAGATTCTTCTTCACTCATCAC +
Preference number: 3 (lower is better)
Translates to: YHHKHTSGKRQH*KILVRFFFTHH
Trigger: GTGATGAGTGAAGAAGAATCTGACCAGTATCTTGCAGTGTTGACGTTTCCCAGATGTGTGCTTGTGATGATA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000335272.10
ENST00000455418.7
3UTR-3UTR CAA 90 bp TTTAGGAGGGACAGGAGGTTACAAAAGACAGTTTGTGACCTGAAGGCTTCAACAGATTACGTAAACAGTTaGACATTGTCTCTGACCCTA +
Preference number: 3 (lower is better)
Translates to: FRRDRRLQKTVCDLKASTDYVNS*TLSLTL
Trigger: TAGGGTCAGAGACAATGTCAAACTGTTTACGTAATC...TGTTGAAGCCTTCAGGTCACAAACTGTCTTTTGTAACCTCCTGTCCCTCCTAAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000335272.10
ENST00000455418.7
3UTR-3UTR CAA 90 bp ATTCTATTCAAGCTTCCAGGACTGACAGAGGAAAAACTGGATTCAGACAGAGAATATATACACACGTGGTaGAGAACCTGTGCATGTGTG +
Preference number: 3 (lower is better)
Translates to: ILFKLPGLTEEKLDSDREYIHTW*RTCACV
Trigger: CACACATGCACAGGTTCTCAACCACGTGTGTATATA...TTCTCTGTCTGAATCCAGTTTTTCCTCTGTCAGTCCTGGAAGCTTGAATAGAAT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000320996.14
ENST00000335272.10
ENST00000455418.7
3UTR TCA 72 bp GGAGGGACAGGAGGTTACAAAAGACAGTTTGTGACCTaGAGGCTTCAACAATATAATTCTATTCAAGCTTCC +
Preference number: 3 (lower is better)
Translates to: GGTGGYKRQFVT*RLQQYNSIQAS
Trigger: GGAAGCTTGAATAGAATTATATTGTTGAAGCCTTCAGGTCACAAACTGTCTTTTGTAACCTCCTGTCCCTCC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000320996.14
ENST00000335272.10
ENST00000455418.7
3UTR-3UTR CAA 90 bp CTGAAGATAGGTACAGTACTTTGGAGAAATTGTACTAATCCCTTCAGTATGTCTGTAAACAGTTTGACATaGTCTCTGACCCTACAGGGG +
Preference number: 3 (lower is better)
Translates to: LKIGTVLWRNCTNPFSMSVNSLT*SLTLQG
Trigger: CCCCTGTAGGGTCAGAGACAATGTCAAACTGTTTAC...AGACATACTGAAGGGATTAGTACAATTTCTCCAAAGTACTGTACCTATCTTCAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000335272.10
ENST00000455418.7
3UTR TCA 72 bp CAACAGTGCCCAGAGAGTAAACATCAGTCTTTATCCTaGGTACACAAAGGATGTATGAAATGTGGGTTTTGT +
Preference number: 3 (lower is better)
Translates to: QQCPESKHQSLS*VHKGCMKCGFC
Trigger: ACAAAACCCACATTTCATACATCCTTTGTGTACTCAGGATAAAGACTGATGTTTACTCTCTGGGCACTGTTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000320996.14
ENST00000335272.10
ENST00000455418.7
3UTR GCA 72 bp AGCTCTACATGCGCTTTATATACAGCTACAGACATATaGACACATACATATATACACACGTGGTTGAGAACC +
Preference number: 3 (lower is better)
Translates to: SSTCALYTATDI*THTYIHTWLRT
Trigger: GGTTCTCAACCACGTGTGTATATATGTATGTGTGCATATGTCTGTAGCTGTATATAAAGCGCATGTAGAGCT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000320996.14
ENST00000335272.10
ENST00000455418.7
3UTR CCA 72 bp GTCTTTATCCTGAGTACACAAAGGATGTATGAAATGTaGGTTTTGTTGCTGAGGATAACAGGGTATTGCAAT +
Preference number: 3 (lower is better)
Translates to: VFILSTQRMYEM*VLLLRITGYCN
Trigger: ATTGCAATACCCTGTTATCCTCAGCAACAAAACCCACATTTCATACATCCTTTGTGTACTCAGGATAAAGAC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000320996.14
ENST00000335272.10
ENST00000455418.7
3UTR CCA 72 bp TCTTTTGCATTCTTGCTGAAGATAGGTACAGTACTTTaGAGAAATTGTACTAATCCCTTCAGTATGTCTGTA +
Preference number: 3 (lower is better)
Translates to: SFAFLLKIGTVL*RNCTNPFSMSV
Trigger: TACAGACATACTGAAGGGATTAGTACAATTTCTCCAAAGTACTGTACCTATCTTCAGCAAGAATGCAAAAGA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000320996.14
ENST00000335272.10
ENST00000455418.7
CDS-3UTR CCA 90 bp CAGATGTCCACCAGTCTCTTGGCGGGGCCTCCTCACCGCACGCAGGCCAGACTCTGTCCACCAGTCTCTTaGCGGGGCCTCCTCACCGCA +
Preference number: 4 (lower is better)
Translates to: QMSTSLLAGPPHRTQARLCPPVS*RGLLTA
Trigger: TGCGGTGAGGAGGCCCCGCCAAGAGACTGGTGGACA...GAGTCTGGCCTGCGTGCGGTGAGGAGGCCCCGCCAAGAGACTGGTGGACATCTG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000320996.14
ENST00000335272.10
ENST00000455418.7
CDS-3UTR CCA 90 bp CCAGTGGGGGAGGGATGCAGGACATGTGGGAAAACGAGGAGCAGGCAGGGCAGGTGTCCACCAGTCTCTTaGCGGGGCCTCCTCACCGCA +
Preference number: 4 (lower is better)
Translates to: PVGEGCRTCGKTRSRQGRCPPVS*RGLLTA
Trigger: TGCGGTGAGGAGGCCCCGCCAAGAGACTGGTGGACA...CCTGCCCTGCCTGCTCCTCGTTTTCCCACATGTCCTGCATCCCTCCCCCACTGG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENST00000320996.14
ENST00000335272.10
ENST00000455418.7
CDS-3UTR TCA 90 bp TCAGATGTCCACCAGTCTCTTGGCGGGGCCTCCTCACCGCACGCAGGCCAGACTTTCCAGGCTTTCTCATaGAACACCAAGGAGCCCTCG +
Preference number: 4 (lower is better)
Translates to: SDVHQSLGGASSPHAGQTFQAFS*NTKEPS
Trigger: CGAGGGCTCCTTGGTGTTTCATGAGAAAGCCTGGAA...AGTCTGGCCTGCGTGCGGTGAGGAGGCCCCGCCAAGAGACTGGTGGACATCTGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000320996.14
ENST00000335272.10
ENST00000455418.7
CDS-3UTR CCA 90 bp CCAGTGGGGGAGGGATGCAGGACATGTGGGAAAACGAGGAGCAGGCAGGGCAGGTTCTTCACTCATCACTaGCTGCGCTTGTTCCCCTCA +
Preference number: 4 (lower is better)
Translates to: PVGEGCRTCGKTRSRQGRFFTHH*LRLFPS
Trigger: TGAGGGGAACAAGCGCAGCCAGTGATGAGTGAAGAA...CCTGCCCTGCCTGCTCCTCGTTTTCCCACATGTCCTGCATCCCTCCCCCACTGG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENST00000320996.14
ENST00000335272.10
ENST00000455418.7
CDS-3UTR TCA 90 bp CTCTTGGCGGGGCCTCCTCACCGCACGCAGGCCAGACTCACACTGCATCTTAAACCTTGTCTGATTCACTaGAATCACTCCAGTGGGGGA +
Preference number: 4 (lower is better)
Translates to: LLAGPPHRTQARLTLHLKPCLIH*NHSSGG
Trigger: TCCCCCACTGGAGTGATTTCAGTGAATCAGACAAGG...TTTAAGATGCAGTGTGAGTCTGGCCTGCGTGCGGTGAGGAGGCCCCGCCAAGAG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000320996.14
ENST00000335272.10
ENST00000455418.7
CDS-3UTR GCA 90 bp ATGTCCACCAGTCTCTTGGCGGGGCCTCCTCACCGCACGCAGGCCAGACTCACAGGGAAACGTCAACACTaGAAGATACTGGTCAGATTC +
Preference number: 4 (lower is better)
Translates to: MSTSLLAGPPHRTQARLTGKRQH*KILVRF
Trigger: GAATCTGACCAGTATCTTGCAGTGTTGACGTTTCCC...TGTGAGTCTGGCCTGCGTGCGGTGAGGAGGCCCCGCCAAGAGACTGGTGGACAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000320996.14
ENST00000335272.10
ENST00000455418.7
CDS-3UTR CCA 90 bp CTGGTCAGATTCTTCTTCACTCATCACTGGCTGCGCTTGTTCCCCTCACTTGACTGTCCACCAGTCTCTTaGCGGGGCCTCCTCACCGCA +
Preference number: 4 (lower is better)
Translates to: LVRFFFTHHWLRLFPSLDCPPVS*RGLLTA
Trigger: TGCGGTGAGGAGGCCCCGCCAAGAGACTGGTGGACA...GTCAAGTGAGGGGAACAAGCGCAGCCAGTGATGAGTGAAGAAGAATCTGACCAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000335272.10
ENST00000455418.7
CDS-3UTR TCA 90 bp ATGTCCACCAGTCTCTTGGCGGGGCCTCCTCACCGCACGCAGGCCAGACTCACAGTTTCTAGTTCTTTCTaGGTCTCGTCTTCCATTCTC +
Preference number: 4 (lower is better)
Translates to: MSTSLLAGPPHRTQARLTVSSSF*VSSSIL
Trigger: GAGAATGGAAGACGAGACTCAGAAAGAACTAGAAAC...TGTGAGTCTGGCCTGCGTGCGGTGAGGAGGCCCCGCCAAGAGACTGGTGGACAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000320996.14
ENST00000335272.10
ENST00000455418.7
CDS-3UTR TCA 90 bp GTGGGGGAGGGATGCAGGACATGTGGGAAAACGAGGAGCAGGCAGGGCAGGACTATATACACACGTGGTTaGGAACCTGTGCATGTGTGT +
Preference number: 4 (lower is better)
Translates to: VGEGCRTCGKTRSRQGRTIYTRG*EPVHVC
Trigger: ACACACATGCACAGGTTCTCAACCACGTGTGTATAT...AGTCCTGCCCTGCCTGCTCCTCGTTTTCCCACATGTCCTGCATCCCTCCCCCAC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000320996.14
ENST00000335272.10
ENST00000455418.7
CDS-3UTR TCA 90 bp ATGTCCACCAGTCTCTTGGCGGGGCCTCCTCACCGCACGCAGGCCAGACTCACAATCAGATTACTAATGTaGTTTGACTGCAGGGGTTGG +
Preference number: 4 (lower is better)
Translates to: MSTSLLAGPPHRTQARLTIRLLM*FDCRGW
Trigger: CCAACCCCTGCAGTCAAATCACATTAGTAATCTGAT...TGTGAGTCTGGCCTGCGTGCGGTGAGGAGGCCCCGCCAAGAGACTGGTGGACAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000320996.14
ENST00000335272.10
ENST00000455418.7
CDS-3UTR GCA 90 bp CAGTCAGATGTCCACCAGTCTCTTGGCGGGGCCTCCTCACCGCACGCAGGCCAGCCCAAGTCTGGTTTGTaGCATGTTTCGATTTTAATG +
Preference number: 4 (lower is better)
Translates to: QSDVHQSLGGASSPHAGQPKSGL*HVSILM
Trigger: CATTAAAATCGAAACATGGCACAAACCAGACTTGGG...CTGGCCTGCGTGCGGTGAGGAGGCCCCGCCAAGAGACTGGTGGACATCTGACTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000320996.14
ENST00000335272.10
ENST00000455418.7
CDS-3UTR GCA 90 bp CCAGTGGGGGAGGGATGCAGGACATGTGGGAAAACGAGGAGCAGGCAGGGCAGGCCTATCTTACAACAGTaGCCAGAGAGTAAACATCAG +
Preference number: 4 (lower is better)
Translates to: PVGEGCRTCGKTRSRQGRPILQQ*PESKHQ
Trigger: CTGATGTTTACTCTCTGGGCACTGTTGTAAGATAGG...CCTGCCCTGCCTGCTCCTCGTTTTCCCACATGTCCTGCATCCCTCCCCCACTGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000320996.14
ENST00000335272.10
ENST00000455418.7
CDS-3UTR CCA 90 bp ATGTCCACCAGTCTCTTGGCGGGGCCTCCTCACCGCACGCAGGCCAGACTCACAACAAGTGTGTGTATCTaGATCTGTAGCTCTACATGC +
Preference number: 4 (lower is better)
Translates to: MSTSLLAGPPHRTQARLTTSVCI*ICSSTC
Trigger: GCATGTAGAGCTACAGATCCAGATACACACACTTGT...TGTGAGTCTGGCCTGCGTGCGGTGAGGAGGCCCCGCCAAGAGACTGGTGGACAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000320996.14
ENST00000335272.10
ENST00000455418.7
CDS-3UTR TCA 90 bp CCAGTGGGGGAGGGATGCAGGACATGTGGGAAAACGAGGAGCAGGCAGGGCAGGTCTGCTGGTTCAACTTaGCTTCTATCTGCAATATCT +
Preference number: 4 (lower is better)
Translates to: PVGEGCRTCGKTRSRQGRSAGST*LLSAIS
Trigger: AGATATTGCAGATAGAAGTCAAGTTGAACCAGCAGA...CCTGCCCTGCCTGCTCCTCGTTTTCCCACATGTCCTGCATCCCTCCCCCACTGG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000320996.14
ENST00000335272.10
ENST00000455418.7
CDS-3UTR GCA 90 bp GTGGGGGAGGGATGCAGGACATGTGGGAAAACGAGGAGCAGGCAGGGCAGGACTATTCTTACTAGCTTCTaGAACAGAGTAAAGCTGCCC +
Preference number: 4 (lower is better)
Translates to: VGEGCRTCGKTRSRQGRTILTSF*NRVKLP
Trigger: GGGCAGCTTTACTCTGTTGCAGAAGCTAGTAAGAAT...AGTCCTGCCCTGCCTGCTCCTCGTTTTCCCACATGTCCTGCATCCCTCCCCCAC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000320996.14
ENST00000335272.10
ENST00000455418.7
CDS-3UTR GCA 90 bp ATGTCCACCAGTCTCTTGGCGGGGCCTCCTCACCGCACGCAGGCCAGACTCACAATCAGCTTTGTAGTCTaGTGGTTCAACTTGACTTCT +
Preference number: 4 (lower is better)
Translates to: MSTSLLAGPPHRTQARLTISFVV*WFNLTS
Trigger: AGAAGTCAAGTTGAACCAGCAGACTACAAAGCTGAT...TGTGAGTCTGGCCTGCGTGCGGTGAGGAGGCCCCGCCAAGAGACTGGTGGACAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000320996.14
ENST00000335272.10
ENST00000455418.7
CDS-3UTR GCA 90 bp AGTGGGGGAGGGATGCAGGACATGTGGGAAAACGAGGAGCAGGCAGGGCAGGACCCTATCTTACAACAGTaGCCAGAGAGTAAACATCAG +
Preference number: 4 (lower is better)
Translates to: SGGGMQDMWENEEQAGQDPILQQ*PESKHQ
Trigger: CTGATGTTTACTCTCTGGGCACTGTTGTAAGATAGG...GTCCTGCCCTGCCTGCTCCTCGTTTTCCCACATGTCCTGCATCCCTCCCCCACT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000320996.14
ENST00000335272.10
ENST00000455418.7
CDS-3UTR CCA 90 bp TGGCGGGGCCTCCTCACCGCACGCAGGCCAGACTCACACTGCATCTTAAACTGTCTCCTGAACAGAACATaGCAAAACCACACGGAATTC +
Preference number: 4 (lower is better)
Translates to: WRGLLTARRPDSHCILNCLLNRT*QNHTEF
Trigger: GAATTCCGTGTGGTTTTGCCATGTTCTGTTCAGGAG...ACAGTTTAAGATGCAGTGTGAGTCTGGCCTGCGTGCGGTGAGGAGGCCCCGCCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000320996.14
ENST00000335272.10
ENST00000455418.7
CDS-3UTR CCA 90 bp TCCACCAGTCTCTTGGCGGGGCCTCCTCACCGCACGCAGGCCAGACTCACACTGAGGATGTATGAAATGTaGGTTTTGTTGCTGAGGATA +
Preference number: 4 (lower is better)
Translates to: STSLLAGPPHRTQARLTLRMYEM*VLLLRI
Trigger: TATCCTCAGCAACAAAACCCACATTTCATACATCCT...CAGTGTGAGTCTGGCCTGCGTGCGGTGAGGAGGCCCCGCCAAGAGACTGGTGGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000320996.14
ENST00000335272.10
ENST00000455418.7
CDS-3UTR TCA 90 bp CCAGTGGGGGAGGGATGCAGGACATGTGGGAAAACGAGGAGCAGGCAGGGCAGGCAAAACAAGACTCCATaGAGTGCTATATTTCCAACT +
Preference number: 4 (lower is better)
Translates to: PVGEGCRTCGKTRSRQGRQNKTP*SAIFPT
Trigger: AGTTGGAAATATAGCACTTCATGGAGTCTTGTTTTG...CCTGCCCTGCCTGCTCCTCGTTTTCCCACATGTCCTGCATCCCTCCCCCACTGG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENST00000320996.14
ENST00000335272.10
ENST00000455418.7
CDS-3UTR GCA 90 bp ACTGCAAGATACTGGTCAGATTCTTCTTCACTCATCACTGGCTGCGCTTGTTCCCATCAGCAGCCGACGTaGCTCGAACGGAACCCCTCT +
Preference number: 4 (lower is better)
Translates to: TARYWSDSSSLITGCACSHQQPT*LERNPS
Trigger: AGAGGGGTTCCGTTCGAGGCACGTCGGCTGCTGATG...GGAACAAGCGCAGCCAGTGATGAGTGAAGAAGAATCTGACCAGTATCTTGCAGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000335272.10
ENST00000455418.7
ENST00000634017.1
CDS-3UTR GCA 90 bp TCAGATGTCCACCAGTCTCTTGGCGGGGCCTCCTCACCGCACGCAGGCCAGACTATCTGTAGCTCTACATaGGCTTTATATACAGCTACA +
Preference number: 4 (lower is better)
Translates to: SDVHQSLGGASSPHAGQTICSST*ALYTAT
Trigger: TGTAGCTGTATATAAAGCGCATGTAGAGCTACAGAT...AGTCTGGCCTGCGTGCGGTGAGGAGGCCCCGCCAAGAGACTGGTGGACATCTGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000320996.14
ENST00000335272.10
ENST00000455418.7
CDS-3UTR GCA 90 bp CAGATGTCCACCAGTCTCTTGGCGGGGCCTCCTCACCGCACGCAGGCCAGACTCCAAGACTCCATGAAGTaGTATATTTCCAACTTTTCT +
Preference number: 4 (lower is better)
Translates to: QMSTSLLAGPPHRTQARLQDSMK*YISNFS
Trigger: AGAAAAGTTGGAAATATAGCACTTCATGGAGTCTTG...GAGTCTGGCCTGCGTGCGGTGAGGAGGCCCCGCCAAGAGACTGGTGGACATCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000320996.14
ENST00000335272.10
ENST00000455418.7
CDS-3UTR GCA 90 bp GTGGGGGAGGGATGCAGGACATGTGGGAAAACGAGGAGCAGGCAGGGCAGGACTAACAGGGTATTGCAATaGAGTAGTGATCCTACACAT +
Preference number: 4 (lower is better)
Translates to: VGEGCRTCGKTRSRQGRTNRVLQ*SSDPTH
Trigger: ATGTGTAGGATCACTACTGCATTGCAATACCCTGTT...AGTCCTGCCCTGCCTGCTCCTCGTTTTCCCACATGTCCTGCATCCCTCCCCCAC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000320996.14
ENST00000335272.10
ENST00000455418.7
CDS-3UTR CCA 90 bp AGTGGGGGAGGGATGCAGGACATGTGGGAAAACGAGGAGCAGGCAGGGCAGGACAGCTTTGTAGTCTGCTaGTTCAACTTGACTTCTATC +
Preference number: 4 (lower is better)
Translates to: SGGGMQDMWENEEQAGQDSFVVC*FNLTSI
Trigger: GATAGAAGTCAAGTTGAACCAGCAGACTACAAAGCT...GTCCTGCCCTGCCTGCTCCTCGTTTTCCCACATGTCCTGCATCCCTCCCCCACT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000320996.14
ENST00000335272.10
ENST00000455418.7
CDS-3UTR GCA 90 bp GTGCATGTGTGTGTATCATCACAAGCACACATCTGGGAAACGTCAACACTGCAACATCAGCAGCCGACGTaGCTCGAACGGAACCCCTCT +
Preference number: 4 (lower is better)
Translates to: VHVCVSSQAHIWETSTLQHQQPT*LERNPS
Trigger: AGAGGGGTTCCGTTCGAGGCACGTCGGCTGCTGATG...TTGCAGTGTTGACGTTTCCCAGATGTGTGCTTGTGATGATACACACACATGCAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000335272.10
ENST00000455418.7
CDS-3UTR CCA 90 bp TGCAAGATACTGGTCAGATTCTTCTTCACTCATCACTGGCTGCGCTTGTTCCCCGGGATGCAGGACATGTaGGAAAACGAGGAGCAGGCA +
Preference number: 4 (lower is better)
Translates to: CKILVRFFFTHHWLRLFPGMQDM*ENEEQA
Trigger: TGCCTGCTCCTCGTTTTCCCACATGTCCTGCATCCC...GGGGAACAAGCGCAGCCAGTGATGAGTGAAGAAGAATCTGACCAGTATCTTGCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000335272.10
ENST00000455418.7
CDS-3UTR TCA 90 bp CAGGACATGTGGGAAAACGAGGAGCAGGCAGGGCAGGACTGTCAGCAAATCAGAATATACACACGTGGTTaGGAACCTGTGCATGTGTGT +
Preference number: 4 (lower is better)
Translates to: QDMWENEEQAGQDCQQIRIYTRG*EPVHVC
Trigger: ACACACATGCACAGGTTCTCAACCACGTGTGTATAT...TCTGATTTGCTGACAGTCCTGCCCTGCCTGCTCCTCGTTTTCCCACATGTCCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000320996.14
ENST00000335272.10
ENST00000455418.7
CDS-3UTR TCA 90 bp CAGGACATGTGGGAAAACGAGGAGCAGGCAGGGCAGGACTGTCAGCAAATCAGATCAAGCTTCCAGGACTaGCAGAGGAAAAACTGGATT +
Preference number: 4 (lower is better)
Translates to: QDMWENEEQAGQDCQQIRSSFQD*QRKNWI
Trigger: AATCCAGTTTTTCCTCTGTCAGTCCTGGAAGCTTGA...TCTGATTTGCTGACAGTCCTGCCCTGCCTGCTCCTCGTTTTCCCACATGTCCTG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000320996.14
ENST00000335272.10
ENST00000455418.7
CDS-3UTR TCA 90 bp TGGCGGGGCCTCCTCACCGCACGCAGGCCAGACTCACACTGCATCTTAAACTGTAGACAGTTTGTGACCTaGAGGCTTCAACAATATAAT +
Preference number: 4 (lower is better)
Translates to: WRGLLTARRPDSHCILNCRQFVT*RLQQYN
Trigger: ATTATATTGTTGAAGCCTTCAGGTCACAAACTGTCT...ACAGTTTAAGATGCAGTGTGAGTCTGGCCTGCGTGCGGTGAGGAGGCCCCGCCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000320996.14
ENST00000335272.10
ENST00000455418.7
CDS-3UTR TCA 90 bp CTCTTGGCGGGGCCTCCTCACCGCACGCAGGCCAGACTCACACTGCATCTTAAATACACAAAGGATGTATaGAATGTGGGTTTTGTTGCT +
Preference number: 4 (lower is better)
Translates to: LLAGPPHRTQARLTLHLKYTKDV*NVGFVA
Trigger: AGCAACAAAACCCACATTTCATACATCCTTTGTGTA...TTTAAGATGCAGTGTGAGTCTGGCCTGCGTGCGGTGAGGAGGCCCCGCCAAGAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000320996.14
ENST00000335272.10
ENST00000455418.7
CDS-3UTR TCA 90 bp ACCGCACGCAGGCCAGACTCACACTGCATCTTAAACTGTTCCTATCTCAAAGTCCGCCTAAGCTCCCAATaGTACTACAGATGCCAGCGA +
Preference number: 4 (lower is better)
Translates to: TARRPDSHCILNCSYLKVRLSSQ*YYRCQR
Trigger: TCGCTGGCATCTGTAGTATCATTGGGAGCTTAGGCG...GACTTTGAGATAGGAACAGTTTAAGATGCAGTGTGAGTCTGGCCTGCGTGCGGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000320996.14
ENST00000335272.10
ENST00000455418.7
CDS-3UTR TCA 90 bp CAAGATACTGGTCAGATTCTTCTTCACTCATCACTGGCTGCGCTTGTTCCCCTCCGCCTAAGCTCCCAATaGTACTACAGATGCCAGCGA +
Preference number: 4 (lower is better)
Translates to: QDTGQILLHSSLAALVPLRLSSQ*YYRCQR
Trigger: TCGCTGGCATCTGTAGTATCATTGGGAGCTTAGGCG...GAGGGGAACAAGCGCAGCCAGTGATGAGTGAAGAAGAATCTGACCAGTATCTTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000335272.10
ENST00000455418.7
CDS-3UTR GCA 90 bp CTTGACCTTGATTACGTAAACAGTTTGACATTGTCTCTGACCCTACAGGGGACTCATCAGCAGCCGACGTaGCTCGAACGGAACCCCTCT +
Preference number: 4 (lower is better)
Translates to: LDLDYVNSLTLSLTLQGTHQQPT*LERNPS
Trigger: AGAGGGGTTCCGTTCGAGGCACGTCGGCTGCTGATG...AGTCCCCTGTAGGGTCAGAGACAATGTCAAACTGTTTACGTAATCAAGGTCAAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000335272.10
ENST00000455418.7
ENST00000634017.1
CDS-3UTR GCA 90 bp CTGCAAGATACTGGTCAGATTCTTCTTCACTCATCACTGGCTGCGCTTGTTCCCTCACTCATCACTGGCTaGGCTTGTTCCCCTCACTTG +
Preference number: 4 (lower is better)
Translates to: LQDTGQILLHSSLAALVPSLITG*ACSPHL
Trigger: CAAGTGAGGGGAACAAGCGCAGCCAGTGATGAGTGA...GGGAACAAGCGCAGCCAGTGATGAGTGAAGAAGAATCTGACCAGTATCTTGCAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000335272.10
ENST00000455418.7
ENST00000634017.1
CDS-3UTR GCA 90 bp TACTGGTCAGATTCTTCTTCACTCATCACTGGCTGCGCTTGTTCCCCTCACTTGTCACTCATCACTGGCTaGGCTTGTTCCCCTCACTTG +
Preference number: 4 (lower is better)
Translates to: YWSDSSSLITGCACSPHLSLITG*ACSPHL
Trigger: CAAGTGAGGGGAACAAGCGCAGCCAGTGATGAGTGA...CAAGTGAGGGGAACAAGCGCAGCCAGTGATGAGTGAAGAAGAATCTGACCAGTA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000335272.10
ENST00000455418.7
ENST00000634017.1
CDS-3UTR GCA 90 bp GGCCTCCTCACCGCACGCAGGCCAGACTCACACTGCATCTTAAACTGTTCCTATGGGAAACGTCAACACTaGAAGATACTGGTCAGATTC +
Preference number: 4 (lower is better)
Translates to: GLLTARRPDSHCILNCSYGKRQH*KILVRF
Trigger: GAATCTGACCAGTATCTTGCAGTGTTGACGTTTCCC...ATAGGAACAGTTTAAGATGCAGTGTGAGTCTGGCCTGCGTGCGGTGAGGAGGCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000320996.14
ENST00000335272.10
ENST00000455418.7
CDS-3UTR GCA 90 bp CTGCGCTTGTTCCCCTCACTTGACCTTGATTACGTAAACAGTTTGACATTGTCTCAAATCTCCCATCACTaGCGTCCCACGGCCTCGCTC +
Preference number: 4 (lower is better)
Translates to: LRLFPSLDLDYVNSLTLSQISHH*RPTASL
Trigger: GAGCGAGGCCGTGGGACGGCAGTGATGGGAGATTTG...AGACAATGTCAAACTGTTTACGTAATCAAGGTCAAGTGAGGGGAACAAGCGCAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000634017.1
CDS-3UTR CCA 90 bp ATCTGTCCTGATGACGTCCTACTTGAGAGCACATCCCACAGTCAGATGTCCACCTTTGACTGCAGGGGTTaGCGTGTTTTAGGAGGGACA +
Preference number: 4 (lower is better)
Translates to: ICPDDVLLESTSHSQMSTFDCRG*RVLGGT
Trigger: TGTCCCTCCTAAAACACGCCAACCCCTGCAGTCAAA...GGTGGACATCTGACTGTGGGATGTGCTCTCAAGTAGGACGTCATCAGGACAGAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000320996.14
ENST00000335272.10
ENST00000455418.7
CDS-3UTR CCA 90 bp AAAGTGGCAGCCGTTTCTGACCAGCACTCTCATGATGCCTATTCAGAATCTGTCGGGATGCAGGACATGTaGGAAAACGAGGAGCAGGCA +
Preference number: 4 (lower is better)
Translates to: KVAAVSDQHSHDAYSESVGMQDM*ENEEQA
Trigger: TGCCTGCTCCTCGTTTTCCCACATGTCCTGCATCCC...GACAGATTCTGAATAGGCATCATGAGAGTGCTGGTCAGAAACGGCTGCCACTTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000320996.14
ENST00000335272.10
ENST00000455418.7
CDS-3UTR TCA 90 bp AAAGTGGCAGCCGTTTCTGACCAGCACTCTCATGATGCCTATTCAGAATCTGTCTTCCAGGCTTTCTCATaGAACACCAAGGAGCCCTCG +
Preference number: 4 (lower is better)
Translates to: KVAAVSDQHSHDAYSESVFQAFS*NTKEPS
Trigger: CGAGGGCTCCTTGGTGTTTCATGAGAAAGCCTGGAA...GACAGATTCTGAATAGGCATCATGAGAGTGCTGGTCAGAAACGGCTGCCACTTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000320996.14
ENST00000335272.10
ENST00000455418.7
CDS-3UTR TCA 90 bp CTGCAAGATACTGGTCAGATTCTTCTTCACTCATCACTGGCTGCGCTTGTTCCCCCTTGTCTGATTCACTaGAATCACTCCAGTGGGGGA +
Preference number: 4 (lower is better)
Translates to: LQDTGQILLHSSLAALVPPCLIH*NHSSGG
Trigger: TCCCCCACTGGAGTGATTTCAGTGAATCAGACAAGG...GGGAACAAGCGCAGCCAGTGATGAGTGAAGAAGAATCTGACCAGTATCTTGCAG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000335272.10
ENST00000455418.7
CDS-3UTR GCA 90 bp CTCTTGGCGGGGCCTCCTCACCGCACGCAGGCCAGACTCACACTGCATCTTAAACAAGACTCCATGAAGTaGTATATTTCCAACTTTTCT +
Preference number: 4 (lower is better)
Translates to: LLAGPPHRTQARLTLHLKQDSMK*YISNFS
Trigger: AGAAAAGTTGGAAATATAGCACTTCATGGAGTCTTG...TTTAAGATGCAGTGTGAGTCTGGCCTGCGTGCGGTGAGGAGGCCCCGCCAAGAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000320996.14
ENST00000335272.10
ENST00000455418.7
CDS-3UTR CCA 90 bp CAAGATACTGGTCAGATTCTTCTTCACTCATCACTGGCTGCGCTTGTTCCCCTCTTCTTCACTCATCACTaGCTGCGCTTGTTCCCCTCA +
Preference number: 4 (lower is better)
Translates to: QDTGQILLHSSLAALVPLFFTHH*LRLFPS
Trigger: TGAGGGGAACAAGCGCAGCCAGTGATGAGTGAAGAA...GAGGGGAACAAGCGCAGCCAGTGATGAGTGAAGAAGAATCTGACCAGTATCTTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000335272.10
ENST00000455418.7
ENST00000634017.1
CDS-3UTR CCA 90 bp ATGTGGGAAAACGAGGAGCAGGCAGGGCAGGACTGTCAGCAAATCAGATTACTATTTGACTGCAGGGGTTaGCGTGTTTTAGGAGGGACA +
Preference number: 4 (lower is better)
Translates to: MWENEEQAGQDCQQIRLLFDCRG*RVLGGT
Trigger: TGTCCCTCCTAAAACACGCCAACCCCTGCAGTCAAA...TAGTAATCTGATTTGCTGACAGTCCTGCCCTGCCTGCTCCTCGTTTTCCCACAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENST00000320996.14
ENST00000335272.10
ENST00000455418.7
CDS-3UTR CCA 90 bp TGTGCATGTGTGTGTATCATCACAAGCACACATCTGGGAAACGTCAACACTGCAGGGATGCAGGACATGTaGGAAAACGAGGAGCAGGCA +
Preference number: 4 (lower is better)
Translates to: CACVCIITSTHLGNVNTAGMQDM*ENEEQA
Trigger: TGCCTGCTCCTCGTTTTCCCACATGTCCTGCATCCC...TGCAGTGTTGACGTTTCCCAGATGTGTGCTTGTGATGATACACACACATGCACA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000320996.14
ENST00000335272.10
ENST00000455418.7
CDS-3UTR TCA 90 bp GGCCTCCTCACCGCACGCAGGCCAGACTCACACTGCATCTTAAACTGTTCCTATTCTGCTGGTTCAACTTaGCTTCTATCTGCAATATCT +
Preference number: 4 (lower is better)
Translates to: GLLTARRPDSHCILNCSYSAGST*LLSAIS
Trigger: AGATATTGCAGATAGAAGTCAAGTTGAACCAGCAGA...ATAGGAACAGTTTAAGATGCAGTGTGAGTCTGGCCTGCGTGCGGTGAGGAGGCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000320996.14
ENST00000335272.10
ENST00000455418.7
CDS-3UTR TCA 90 bp CAGGACATGTGGGAAAACGAGGAGCAGGCAGGGCAGGACTGTCAGCAAATCAGAACACTTTGCAGACAATaGTTATGCTCTGACAAAACC +
Preference number: 4 (lower is better)
Translates to: QDMWENEEQAGQDCQQIRTLCRQ*LCSDKT
Trigger: GGTTTTGTCAGAGCATAATCATTGTCTGCAAAGTGT...TCTGATTTGCTGACAGTCCTGCCCTGCCTGCTCCTCGTTTTCCCACATGTCCTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000320996.14
ENST00000335272.10
ENST00000455418.7
CDS-3UTR TCA 90 bp ATGTGGGTTTTGTTGCTGAGGATAACAGGGTATTGCAATGCAGTAGTGATCCTACCACACGGAATTCCTTaGTCAGCACCATCTTCCCGG +
Preference number: 4 (lower is better)
Translates to: MWVLLLRITGYCNAVVILPHGIP*SAPSSR
Trigger: CCGGGAAGATGGTGCTGATCAAGGAATTCCGTGTGG...TAGGATCACTACTGCATTGCAATACCCTGTTATCCTCAGCAACAAAACCCACAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000320996.14
ENST00000335272.10
ENST00000455418.7
CDS-3UTR TCA 90 bp CAAGTGTGTGTATCTGGATCTGTAGCTCTACATGCGCTTTATATACAGCTACAGCCACACGGAATTCCTTaGTCAGCACCATCTTCCCGG +
Preference number: 4 (lower is better)
Translates to: QVCVSGSVALHALYIQLQPHGIP*SAPSSR
Trigger: CCGGGAAGATGGTGCTGATCAAGGAATTCCGTGTGG...CTGTAGCTGTATATAAAGCGCATGTAGAGCTACAGATCCAGATACACACACTTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000320996.14
ENST00000335272.10
ENST00000455418.7
CDS-3UTR TCA 90 bp ATGTGGGAAAACGAGGAGCAGGCAGGGCAGGACTGTCAGCAAATCAGATTACTAATATACACACGTGGTTaGGAACCTGTGCATGTGTGT +
Preference number: 4 (lower is better)
Translates to: MWENEEQAGQDCQQIRLLIYTRG*EPVHVC
Trigger: ACACACATGCACAGGTTCTCAACCACGTGTGTATAT...TAGTAATCTGATTTGCTGACAGTCCTGCCCTGCCTGCTCCTCGTTTTCCCACAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000320996.14
ENST00000335272.10
ENST00000455418.7
CDS-3UTR TCA 90 bp GACATGTGGGAAAACGAGGAGCAGGCAGGGCAGGACTGTCAGCAAATCAGATTACTATATCCTATCATGTaGGCTCTGAGGAATCTAGAC +
Preference number: 4 (lower is better)
Translates to: DMWENEEQAGQDCQQIRLLYPIM*ALRNLD
Trigger: GTCTAGATTCCTCAGAGCTCACATGATAGGATATAG...TAATCTGATTTGCTGACAGTCCTGCCCTGCCTGCTCCTCGTTTTCCCACATGTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000320996.14
ENST00000335272.10
ENST00000455418.7
CDS-3UTR TCA 90 bp CAGGACATGTGGGAAAACGAGGAGCAGGCAGGGCAGGACTGTCAGCAAATCAGAAGACAGTTTGTGACCTaGAGGCTTCAACAATATAAT +
Preference number: 4 (lower is better)
Translates to: QDMWENEEQAGQDCQQIRRQFVT*RLQQYN
Trigger: ATTATATTGTTGAAGCCTTCAGGTCACAAACTGTCT...TCTGATTTGCTGACAGTCCTGCCCTGCCTGCTCCTCGTTTTCCCACATGTCCTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000320996.14
ENST00000335272.10
ENST00000455418.7
CDS-3UTR TCA 90 bp TTTAGGAGGGACAGGAGGTTACAAAAGACAGTTTGTGACCTGAAGGCTTCAACACGCCTAAGCTCCCAATaGTACTACAGATGCCAGCGA +
Preference number: 4 (lower is better)
Translates to: FRRDRRLQKTVCDLKASTRLSSQ*YYRCQR
Trigger: TCGCTGGCATCTGTAGTATCATTGGGAGCTTAGGCG...TGTTGAAGCCTTCAGGTCACAAACTGTCTTTTGTAACCTCCTGTCCCTCCTAAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000320996.14
ENST00000335272.10
ENST00000455418.7
CDS-3UTR TCA 90 bp CTGCGCTTGTTCCCCTCACTTGACCTTGATTACGTAAACAGTTTGACATTGTCTCCACTCACAATTCCTTaGTCAGCACCATCTTCCCGG +
Preference number: 4 (lower is better)
Translates to: LRLFPSLDLDYVNSLTLSPLTIP*SAPSSR
Trigger: CCGGGAAGATGGTGCTGATCAAGGAATTGTGAGTGG...AGACAATGTCAAACTGTTTACGTAATCAAGGTCAAGTGAGGGGAACAAGCGCAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000634017.1
CDS-3UTR CCA 90 bp CAAGATACTGGTCAGATTCTTCTTCACTCATCACTGGCTGCGCTTGTTCCCCTCTCACAAGCACACATCTaGGAAACGTCAACACTGCAA +
Preference number: 4 (lower is better)
Translates to: QDTGQILLHSSLAALVPLSQAHI*ETSTLQ
Trigger: TTGCAGTGTTGACGTTTCCCAGATGTGTGCTTGTGA...GAGGGGAACAAGCGCAGCCAGTGATGAGTGAAGAAGAATCTGACCAGTATCTTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000335272.10
ENST00000455418.7
CDS-3UTR TCA 90 bp TGGTCAGATTCTTCTTCACTCATCACTGGCTGCGCTTGTTCCCCTCACTTGACCTCTGCTGGTTCAACTTaGCTTCTATCTGCAATATCT +
Preference number: 4 (lower is better)
Translates to: WSDSSSLITGCACSPHLTSAGST*LLSAIS
Trigger: AGATATTGCAGATAGAAGTCAAGTTGAACCAGCAGA...GGTCAAGTGAGGGGAACAAGCGCAGCCAGTGATGAGTGAAGAAGAATCTGACCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000335272.10
ENST00000455418.7
ENST00000634017.1
CDS-3UTR TCA 90 bp TCACTTGACCTTGATTACGTAAACAGTTTGACATTGTCTCTGACCCTACAGGGGGGCCTCTCTTGGTCTTaGCTGACTGGAATAATGCTG +
Preference number: 4 (lower is better)
Translates to: SLDLDYVNSLTLSLTLQGGLSWS*LTGIML
Trigger: CAGCATTATTCCAGTCAGTCAAGACCAAGAGAGGCC...CCCCTGTAGGGTCAGAGACAATGTCAAACTGTTTACGTAATCAAGGTCAAGTGA
47% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 3 transcripts:
ENST00000335272.10
ENST00000455418.7
ENST00000634017.1
CDS-3UTR TCA 90 bp CTGCAAGATACTGGTCAGATTCTTCTTCACTCATCACTGGCTGCGCTTGTTCCCGTTTCTAGTTCTTTCTaGGTCTCGTCTTCCATTCTC +
Preference number: 4 (lower is better)
Translates to: LQDTGQILLHSSLAALVPVSSSF*VSSSIL
Trigger: GAGAATGGAAGACGAGACTCAGAAAGAACTAGAAAC...GGGAACAAGCGCAGCCAGTGATGAGTGAAGAAGAATCTGACCAGTATCTTGCAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000335272.10
ENST00000455418.7
ENST00000634017.1
CDS-3UTR TCA 90 bp GTGGCAGCCGTTTCTGACCAGCACTCTCATGATGCCTATTCAGAATCTGTCCTGACAAAAGACAGTTTGTaGCCTGAAGGCTTCAACAAT +
Preference number: 4 (lower is better)
Translates to: VAAVSDQHSHDAYSESVLTKDSL*PEGFNN
Trigger: ATTGTTGAAGCCTTCAGGTCACAAACTGTCTTTTGT...CAGGACAGATTCTGAATAGGCATCATGAGAGTGCTGGTCAGAAACGGCTGCCAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000320996.14
ENST00000335272.10
ENST00000455418.7
CDS-3UTR TCA 90 bp TACTGGTCAGATTCTTCTTCACTCATCACTGGCTGCGCTTGTTCCCCTCACTTGATCAGATTACTAATGTaGTTTGACTGCAGGGGTTGG +
Preference number: 4 (lower is better)
Translates to: YWSDSSSLITGCACSPHLIRLLM*FDCRGW
Trigger: CCAACCCCTGCAGTCAAATCACATTAGTAATCTGAT...CAAGTGAGGGGAACAAGCGCAGCCAGTGATGAGTGAAGAAGAATCTGACCAGTA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000335272.10
ENST00000455418.7
CDS-3UTR TCA 90 bp CTTGACCTTGATTACGTAAACAGTTTGACATTGTCTCTGACCCTACAGGGGACTCCTTGTCTGATTCACTaGAATCACTCCAGTGGGGGA +
Preference number: 4 (lower is better)
Translates to: LDLDYVNSLTLSLTLQGTPCLIH*NHSSGG
Trigger: TCCCCCACTGGAGTGATTTCAGTGAATCAGACAAGG...AGTCCCCTGTAGGGTCAGAGACAATGTCAAACTGTTTACGTAATCAAGGTCAAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000335272.10
ENST00000455418.7
CDS-3UTR TCA 90 bp GACATGTGGGAAAACGAGGAGCAGGCAGGGCAGGACTGTCAGCAAATCAGATTACATCAGTCTTTATCCTaGGTACACAAAGGATGTATG +
Preference number: 4 (lower is better)
Translates to: DMWENEEQAGQDCQQIRLHQSLS*VHKGCM
Trigger: CATACATCCTTTGTGTACTCAGGATAAAGACTGATG...TAATCTGATTTGCTGACAGTCCTGCCCTGCCTGCTCCTCGTTTTCCCACATGTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000320996.14
ENST00000335272.10
ENST00000455418.7
CDS-3UTR TCA 90 bp GTGGCAGCCGTTTCTGACCAGCACTCTCATGATGCCTATTCAGAATCTGTCCTGACACTTTGCAGACAATaGTTATGCTCTGACAAAACC +
Preference number: 4 (lower is better)
Translates to: VAAVSDQHSHDAYSESVLTLCRQ*LCSDKT
Trigger: GGTTTTGTCAGAGCATAATCATTGTCTGCAAAGTGT...CAGGACAGATTCTGAATAGGCATCATGAGAGTGCTGGTCAGAAACGGCTGCCAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000320996.14
ENST00000335272.10
ENST00000455418.7
CDS-3UTR GCA 90 bp CAAGATACTGGTCAGATTCTTCTTCACTCATCACTGGCTGCGCTTGTTCCCCTCATTCTTACTAGCTTCTaGAACAGAGTAAAGCTGCCC +
Preference number: 4 (lower is better)
Translates to: QDTGQILLHSSLAALVPLILTSF*NRVKLP
Trigger: GGGCAGCTTTACTCTGTTGCAGAAGCTAGTAAGAAT...GAGGGGAACAAGCGCAGCCAGTGATGAGTGAAGAAGAATCTGACCAGTATCTTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000335272.10
ENST00000455418.7
ENST00000634017.1
CDS-3UTR GCA 90 bp TGGTCAGATTCTTCTTCACTCATCACTGGCTGCGCTTGTTCCCCTCACTTGACCTTTTCTACTTTGCTTTaGAGTCCCCACCACTTGAAT +
Preference number: 4 (lower is better)
Translates to: WSDSSSLITGCACSPHLTFSTLL*SPHHLN
Trigger: ATTCAAGTGGTGGGGACTGCAAAGCAAAGTAGAAAA...GGTCAAGTGAGGGGAACAAGCGCAGCCAGTGATGAGTGAAGAAGAATCTGACCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENST00000335272.10
ENST00000455418.7
ENST00000634017.1
CDS-3UTR GCA 90 bp ATGTGGGTTTTGTTGCTGAGGATAACAGGGTATTGCAATGCAGTAGTGATCCTATCACTCATCACTGGCTaGGCTTGTTCCCCTCACTTG +
Preference number: 4 (lower is better)
Translates to: MWVLLLRITGYCNAVVILSLITG*ACSPHL
Trigger: CAAGTGAGGGGAACAAGCGCAGCCAGTGATGAGTGA...TAGGATCACTACTGCATTGCAATACCCTGTTATCCTCAGCAACAAAACCCACAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000320996.14
ENST00000335272.10
ENST00000455418.7
CDS-3UTR GCA 90 bp GCAGCCGTTTCTGACCAGCACTCTCATGATGCCTATTCAGAATCTGTCCTGATGCCTATCTTACAACAGTaGCCAGAGAGTAAACATCAG +
Preference number: 4 (lower is better)
Translates to: AAVSDQHSHDAYSESVLMPILQQ*PESKHQ
Trigger: CTGATGTTTACTCTCTGGGCACTGTTGTAAGATAGG...CATCAGGACAGATTCTGAATAGGCATCATGAGAGTGCTGGTCAGAAACGGCTGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000320996.14
ENST00000335272.10
ENST00000455418.7
CDS-3UTR CCA 90 bp AAAGTGGCAGCCGTTTCTGACCAGCACTCTCATGATGCCTATTCAGAATCTGTCTCACAAGCACACATCTaGGAAACGTCAACACTGCAA +
Preference number: 4 (lower is better)
Translates to: KVAAVSDQHSHDAYSESVSQAHI*ETSTLQ
Trigger: TTGCAGTGTTGACGTTTCCCAGATGTGTGCTTGTGA...GACAGATTCTGAATAGGCATCATGAGAGTGCTGGTCAGAAACGGCTGCCACTTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000320996.14
ENST00000335272.10
ENST00000455418.7
CDS-3UTR CCA 90 bp GCAAGATACTGGTCAGATTCTTCTTCACTCATCACTGGCTGCGCTTGTTCCCCTACAAGTGTGTGTATCTaGATCTGTAGCTCTACATGC +
Preference number: 4 (lower is better)
Translates to: ARYWSDSSSLITGCACSPTSVCI*ICSSTC
Trigger: GCATGTAGAGCTACAGATCCAGATACACACACTTGT...AGGGGAACAAGCGCAGCCAGTGATGAGTGAAGAAGAATCTGACCAGTATCTTGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000335272.10
ENST00000455418.7
CDS-3UTR CCA 90 bp GGCCTCCTCACCGCACGCAGGCCAGACTCACACTGCATCTTAAACTGTTCCTATATAGGTACAGTACTTTaGAGAAATTGTACTAATCCC +
Preference number: 4 (lower is better)
Translates to: GLLTARRPDSHCILNCSYIGTVL*RNCTNP
Trigger: GGGATTAGTACAATTTCTCCAAAGTACTGTACCTAT...ATAGGAACAGTTTAAGATGCAGTGTGAGTCTGGCCTGCGTGCGGTGAGGAGGCC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000320996.14
ENST00000335272.10
ENST00000455418.7
3UTR CAA 72 bp CTGGTCAGATTCTTCTTCACTCATCACTGGCTGCGCTaGTTCCCCTCACTTGACCTTGATTACGTAAACAGT +
Preference number: 4 (lower is better)
Translates to: LVRFFFTHHWLR*FPSLDLDYVNS
Trigger: ACTGTTTACGTAATCAAGGTCAAGTGAGGGGAACAAGCGCAGCCAGTGATGAGTGAAGAAGAATCTGACCAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000335272.10
ENST00000455418.7
ENST00000634017.1
3UTR CAA 72 bp GTATTGCAATGCAGTAGTGATCCTACACATCCTTCCTaGTCTGATTCACTGAAATCACTCCAGTGGGGGAGG +
Preference number: 4 (lower is better)
Translates to: VLQCSSDPTHPS*SDSLKSLQWGR
Trigger: CCTCCCCCACTGGAGTGATTTCAGTGAATCAGACAAGGAAGGATGTGTAGGATCACTACTGCATTGCAATAC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000320996.14
ENST00000335272.10
ENST00000455418.7
CDS-3UTR TCA 90 bp GGTTTTGTTGCTGAGGATAACAGGGTATTGCAATGCAGTAGTGATCCTACACATGGCCTCTCTTGGTCTTaGCTGACTGGAATAATGCTG +
Preference number: 4 (lower is better)
Translates to: GFVAEDNRVLQCSSDPTHGLSWS*LTGIML
Trigger: CAGCATTATTCCAGTCAGTCAAGACCAAGAGAGGCC...ATGTGTAGGATCACTACTGCATTGCAATACCCTGTTATCCTCAGCAACAAAACC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000320996.14
ENST00000335272.10
ENST00000455418.7
CDS-3UTR TCA 90 bp GTGGCAGCCGTTTCTGACCAGCACTCTCATGATGCCTATTCAGAATCTGTCCTGAGACAGTTTGTGACCTaGAGGCTTCAACAATATAAT +
Preference number: 4 (lower is better)
Translates to: VAAVSDQHSHDAYSESVLRQFVT*RLQQYN
Trigger: ATTATATTGTTGAAGCCTTCAGGTCACAAACTGTCT...CAGGACAGATTCTGAATAGGCATCATGAGAGTGCTGGTCAGAAACGGCTGCCAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000320996.14
ENST00000335272.10
ENST00000455418.7
CDS-3UTR GCA 90 bp AAGATACTGGTCAGATTCTTCTTCACTCATCACTGGCTGCGCTTGTTCCCCTCAATTCTTACTAGCTTCTaGAACAGAGTAAAGCTGCCC +
Preference number: 4 (lower is better)
Translates to: KILVRFFFTHHWLRLFPSILTSF*NRVKLP
Trigger: GGGCAGCTTTACTCTGTTGCAGAAGCTAGTAAGAAT...TGAGGGGAACAAGCGCAGCCAGTGATGAGTGAAGAAGAATCTGACCAGTATCTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000335272.10
ENST00000455418.7
ENST00000634017.1
CDS-3UTR GCA 90 bp CAAGATACTGGTCAGATTCTTCTTCACTCATCACTGGCTGCGCTTGTTCCCCTCATCAGCTTTGTAGTCTaGTGGTTCAACTTGACTTCT +
Preference number: 4 (lower is better)
Translates to: QDTGQILLHSSLAALVPLISFVV*WFNLTS
Trigger: AGAAGTCAAGTTGAACCAGCAGACTACAAAGCTGAT...GAGGGGAACAAGCGCAGCCAGTGATGAGTGAAGAAGAATCTGACCAGTATCTTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000335272.10
ENST00000455418.7
ENST00000634017.1
CDS-3UTR GCA 90 bp GCAGCCGTTTCTGACCAGCACTCTCATGATGCCTATTCAGAATCTGTCCTGATGTTTTCTACTTTGCTTTaGAGTCCCCACCACTTGAAT +
Preference number: 4 (lower is better)
Translates to: AAVSDQHSHDAYSESVLMFSTLL*SPHHLN
Trigger: ATTCAAGTGGTGGGGACTGCAAAGCAAAGTAGAAAA...CATCAGGACAGATTCTGAATAGGCATCATGAGAGTGCTGGTCAGAAACGGCTGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000320996.14
ENST00000335272.10
ENST00000455418.7
CDS-3UTR GCA 90 bp CTGCAAGATACTGGTCAGATTCTTCTTCACTCATCACTGGCTGCGCTTGTTCCCAACAGGGTATTGCAATaGAGTAGTGATCCTACACAT +
Preference number: 4 (lower is better)
Translates to: LQDTGQILLHSSLAALVPNRVLQ*SSDPTH
Trigger: ATGTGTAGGATCACTACTGCATTGCAATACCCTGTT...GGGAACAAGCGCAGCCAGTGATGAGTGAAGAAGAATCTGACCAGTATCTTGCAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000335272.10
ENST00000455418.7
CDS-3UTR GCA 90 bp TGCAAGATACTGGTCAGATTCTTCTTCACTCATCACTGGCTGCGCTTGTTCCCCAGGATAACAGGGTATTaGAATGCAGTAGTGATCCTA +
Preference number: 4 (lower is better)
Translates to: CKILVRFFFTHHWLRLFPRITGY*NAVVIL
Trigger: TAGGATCACTACTGCATTGCAATACCCTGTTATCCT...GGGGAACAAGCGCAGCCAGTGATGAGTGAAGAAGAATCTGACCAGTATCTTGCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000335272.10
ENST00000455418.7
CDS-3UTR CCA 90 bp CAAGATACTGGTCAGATTCTTCTTCACTCATCACTGGCTGCGCTTGTTCCCCTCAGCTTTGTAGTCTGCTaGTTCAACTTGACTTCTATC +
Preference number: 4 (lower is better)
Translates to: QDTGQILLHSSLAALVPLSFVVC*FNLTSI
Trigger: GATAGAAGTCAAGTTGAACCAGCAGACTACAAAGCT...GAGGGGAACAAGCGCAGCCAGTGATGAGTGAAGAAGAATCTGACCAGTATCTTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000335272.10
ENST00000455418.7
ENST00000634017.1
CDS-3UTR CCA 90 bp AAGATACTGGTCAGATTCTTCTTCACTCATCACTGGCTGCGCTTGTTCCCCTCATTGGTCTTGACTGACTaGAATAATGCTGGGTCTTCA +
Preference number: 4 (lower is better)
Translates to: KILVRFFFTHHWLRLFPSLVLTD*NNAGSS
Trigger: TGAAGACCCAGCATTATTCCAGTCAGTCAAGACCAA...TGAGGGGAACAAGCGCAGCCAGTGATGAGTGAAGAAGAATCTGACCAGTATCTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000335272.10
ENST00000455418.7
ENST00000634017.1
CDS-3UTR CCA 90 bp ATGTGGGTTTTGTTGCTGAGGATAACAGGGTATTGCAATGCAGTAGTGATCCTATTCTTCACTCATCACTaGCTGCGCTTGTTCCCCTCA +
Preference number: 4 (lower is better)
Translates to: MWVLLLRITGYCNAVVILFFTHH*LRLFPS
Trigger: TGAGGGGAACAAGCGCAGCCAGTGATGAGTGAAGAA...TAGGATCACTACTGCATTGCAATACCCTGTTATCCTCAGCAACAAAACCCACAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000320996.14
ENST00000335272.10
ENST00000455418.7
CDS-3UTR CCA 90 bp CTTGACCTTGATTACGTAAACAGTTTGACATTGTCTCTGACCCTACAGGGGACTCTCCTGAACAGAACATaGCAAAACCACACGGCACTT +
Preference number: 4 (lower is better)
Translates to: LDLDYVNSLTLSLTLQGTLLNRT*QNHTAL
Trigger: AAGTGCCGTGTGGTTTTGCCATGTTCTGTTCAGGAG...AGTCCCCTGTAGGGTCAGAGACAATGTCAAACTGTTTACGTAATCAAGGTCAAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000634017.1
CDS-3UTR TCA 90 bp CTGAAGATAGGTACAGTACTTTGGAGAAATTGTACTAATCCCTTCAGTATGTCTCCACACGGAATTCCTTaGTCAGCACCATCTTCCCGG +
Preference number: 4 (lower is better)
Translates to: LKIGTVLWRNCTNPFSMSPHGIP*SAPSSR
Trigger: CCGGGAAGATGGTGCTGATCAAGGAATTCCGTGTGG...AGACATACTGAAGGGATTAGTACAATTTCTCCAAAGTACTGTACCTATCTTCAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000320996.14
ENST00000335272.10
ENST00000455418.7
CDS-3UTR TCA 90 bp ATTCTATTCAAGCTTCCAGGACTGACAGAGGAAAAACTGGATTCAGACAGAGAAGGCCTCTCTTGGTCTTaGCTGACTGGAATAATGCTG +
Preference number: 4 (lower is better)
Translates to: ILFKLPGLTEEKLDSDREGLSWS*LTGIML
Trigger: CAGCATTATTCCAGTCAGTCAAGACCAAGAGAGGCC...TTCTCTGTCTGAATCCAGTTTTTCCTCTGTCAGTCCTGGAAGCTTGAATAGAAT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000320996.14
ENST00000335272.10
ENST00000455418.7
CDS-3UTR TCA 90 bp CTGCAAGATACTGGTCAGATTCTTCTTCACTCATCACTGGCTGCGCTTGTTCCCCAAAACAAGACTCCATaGAGTGCTATATTTCCAACT +
Preference number: 4 (lower is better)
Translates to: LQDTGQILLHSSLAALVPQNKTP*SAIFPT
Trigger: AGTTGGAAATATAGCACTTCATGGAGTCTTGTTTTG...GGGAACAAGCGCAGCCAGTGATGAGTGAAGAAGAATCTGACCAGTATCTTGCAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000335272.10
ENST00000455418.7
CDS-3UTR GCA 90 bp ATACTGGTCAGATTCTTCTTCACTCATCACTGGCTGCGCTTGTTCCCCTCACTTATCAGCTTTGTAGTCTaGTGGTTCAACTTGACTTCT +
Preference number: 4 (lower is better)
Translates to: ILVRFFFTHHWLRLFPSLISFVV*WFNLTS
Trigger: AGAAGTCAAGTTGAACCAGCAGACTACAAAGCTGAT...AAGTGAGGGGAACAAGCGCAGCCAGTGATGAGTGAAGAAGAATCTGACCAGTAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000335272.10
ENST00000455418.7
ENST00000634017.1
CDS-3UTR GCA 90 bp GCAGCCGTTTCTGACCAGCACTCTCATGATGCCTATTCAGAATCTGTCCTGATGATCTGTAGCTCTACATaGGCTTTATATACAGCTACA +
Preference number: 4 (lower is better)
Translates to: AAVSDQHSHDAYSESVLMICSST*ALYTAT
Trigger: TGTAGCTGTATATAAAGCGCATGTAGAGCTACAGAT...CATCAGGACAGATTCTGAATAGGCATCATGAGAGTGCTGGTCAGAAACGGCTGC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000320996.14
ENST00000335272.10
ENST00000455418.7
CDS-3UTR CCA 90 bp TCACTTGACCTTGATTACGTAAACAGTTTGACATTGTCTCTGACCCTACAGGGGCTCCTGAACAGAACATaGCAAAACCACACGGAATTC +
Preference number: 4 (lower is better)
Translates to: SLDLDYVNSLTLSLTLQGLLNRT*QNHTEF
Trigger: GAATTCCGTGTGGTTTTGCCATGTTCTGTTCAGGAG...CCCCTGTAGGGTCAGAGACAATGTCAAACTGTTTACGTAATCAAGGTCAAGTGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000335272.10
ENST00000455418.7
CDS-3UTR CCA 90 bp AAGCACACATCTGGGAAACGTCAACACTGCAAGATACTGGTCAGATTCTTCTTCCTCCTGAACAGAACATaGCAAAACCACACGGAATTC +
Preference number: 4 (lower is better)
Translates to: KHTSGKRQHCKILVRFFFLLNRT*QNHTEF
Trigger: GAATTCCGTGTGGTTTTGCCATGTTCTGTTCAGGAG...GAAGAAGAATCTGACCAGTATCTTGCAGTGTTGACGTTTCCCAGATGTGTGCTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000335272.10
ENST00000455418.7
CDS-3UTR CCA 90 bp ATTCTATTCAAGCTTCCAGGACTGACAGAGGAAAAACTGGATTCAGACAGAGAATTCTTCACTCATCACTaGCTGCGCTTGTTCCCCTCA +
Preference number: 4 (lower is better)
Translates to: ILFKLPGLTEEKLDSDREFFTHH*LRLFPS
Trigger: TGAGGGGAACAAGCGCAGCCAGTGATGAGTGAAGAA...TTCTCTGTCTGAATCCAGTTTTTCCTCTGTCAGTCCTGGAAGCTTGAATAGAAT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000320996.14
ENST00000335272.10
ENST00000455418.7
CDS-3UTR CCA 90 bp GACATGTGGGAAAACGAGGAGCAGGCAGGGCAGGACTGTCAGCAAATCAGATTAATAGGTACAGTACTTTaGAGAAATTGTACTAATCCC +
Preference number: 4 (lower is better)
Translates to: DMWENEEQAGQDCQQIRLIGTVL*RNCTNP
Trigger: GGGATTAGTACAATTTCTCCAAAGTACTGTACCTAT...TAATCTGATTTGCTGACAGTCCTGCCCTGCCTGCTCCTCGTTTTCCCACATGTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000320996.14
ENST00000335272.10
ENST00000455418.7
CDS-3UTR CCA 90 bp CTGCAAGATACTGGTCAGATTCTTCTTCACTCATCACTGGCTGCGCTTGTTCCCAGGATGTATGAAATGTaGGTTTTGTTGCTGAGGATA +
Preference number: 4 (lower is better)
Translates to: LQDTGQILLHSSLAALVPRMYEM*VLLLRI
Trigger: TATCCTCAGCAACAAAACCCACATTTCATACATCCT...GGGAACAAGCGCAGCCAGTGATGAGTGAAGAAGAATCTGACCAGTATCTTGCAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000335272.10
ENST00000455418.7
CDS-3UTR TCA 90 bp ATTCAAGCTTCCAGGACTGACAGAGGAAAAACTGGATTCAGACAGAGAAAGCTGGTTTCTAGTTCTTTCTaGGTCTCGTCTTCCATTCTC +
Preference number: 4 (lower is better)
Translates to: IQASRTDRGKTGFRQRKLVSSSF*VSSSIL
Trigger: GAGAATGGAAGACGAGACTCAGAAAGAACTAGAAAC...CAGCTTTCTCTGTCTGAATCCAGTTTTTCCTCTGTCAGTCCTGGAAGCTTGAAT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000320996.14
ENST00000335272.10
ENST00000455418.7
CDS-3UTR TCA 90 bp CTGCGCTTGTTCCCCTCACTTGACCTTGATTACGTAAACAGTTTGACATTGTCTGTTTCTAGTTCTTTCTaGGTCTCGTCTTCCATTCTC +
Preference number: 4 (lower is better)
Translates to: LRLFPSLDLDYVNSLTLSVSSSF*VSSSIL
Trigger: GAGAATGGAAGACGAGACTCAGAAAGAACTAGAAAC...AGACAATGTCAAACTGTTTACGTAATCAAGGTCAAGTGAGGGGAACAAGCGCAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000335272.10
ENST00000455418.7
ENST00000634017.1
CDS-3UTR TCA 90 bp GGTTTTGTTGCTGAGGATAACAGGGTATTGCAATGCAGTAGTGATCCTACACATTCAAGCTTCCAGGACTaGCAGAGGAAAAACTGGATT +
Preference number: 4 (lower is better)
Translates to: GFVAEDNRVLQCSSDPTHSSFQD*QRKNWI
Trigger: AATCCAGTTTTTCCTCTGTCAGTCCTGGAAGCTTGA...ATGTGTAGGATCACTACTGCATTGCAATACCCTGTTATCCTCAGCAACAAAACC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000320996.14
ENST00000335272.10
ENST00000455418.7
CDS-3UTR TCA 90 bp AAGATACTGGTCAGATTCTTCTTCACTCATCACTGGCTGCGCTTGTTCCCCTCATACACAAAGGATGTATaGAATGTGGGTTTTGTTGCT +
Preference number: 4 (lower is better)
Translates to: KILVRFFFTHHWLRLFPSYTKDV*NVGFVA
Trigger: AGCAACAAAACCCACATTTCATACATCCTTTGTGTA...TGAGGGGAACAAGCGCAGCCAGTGATGAGTGAAGAAGAATCTGACCAGTATCTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000335272.10
ENST00000455418.7
CDS-3UTR TCA 90 bp GTGCATGTGTGTGTATCATCACAAGCACACATCTGGGAAACGTCAACACTGCAACATCAGTCTTTATCCTaGGTACACAAAGGATGTATG +
Preference number: 4 (lower is better)
Translates to: VHVCVSSQAHIWETSTLQHQSLS*VHKGCM
Trigger: CATACATCCTTTGTGTACTCAGGATAAAGACTGATG...TTGCAGTGTTGACGTTTCCCAGATGTGTGCTTGTGATGATACACACACATGCAC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000320996.14
ENST00000335272.10
ENST00000455418.7
CDS-3UTR GCA 90 bp TCACTTGACCTTGATTACGTAAACAGTTTGACATTGTCTCTGACCCTACAGGGGATTCTTACTAGCTTCTaGAACAGAGTAAAGCTGCCC +
Preference number: 4 (lower is better)
Translates to: SLDLDYVNSLTLSLTLQGILTSF*NRVKLP
Trigger: GGGCAGCTTTACTCTGTTGCAGAAGCTAGTAAGAAT...CCCCTGTAGGGTCAGAGACAATGTCAAACTGTTTACGTAATCAAGGTCAAGTGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000335272.10
ENST00000455418.7
ENST00000634017.1
CDS-3UTR GCA 90 bp ACTAGGTATTTTACATTCACCACACATTCCCTCAAATCTCCACAGTTGTTAGAATCACTCATCACTGGCTaGGCTTGTTCCCCTCACTTG +
Preference number: 4 (lower is better)
Translates to: TRYFTFTTHSLKSPQLLESLITG*ACSPHL
Trigger: CAAGTGAGGGGAACAAGCGCAGCCAGTGATGAGTGA...TTCTAACAACTGTGGAGATTTGAGGGAATGTGTGGTGAATGTAAAATACCTAGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000320996.14
ENST00000335272.10
ENST00000455418.7
CDS-3UTR GCA 90 bp ATGTGGGTTTTGTTGCTGAGGATAACAGGGTATTGCAATGCAGTAGTGATCCTAGGGAAACGTCAACACTaGAAGATACTGGTCAGATTC +
Preference number: 4 (lower is better)
Translates to: MWVLLLRITGYCNAVVILGKRQH*KILVRF
Trigger: GAATCTGACCAGTATCTTGCAGTGTTGACGTTTCCC...TAGGATCACTACTGCATTGCAATACCCTGTTATCCTCAGCAACAAAACCCACAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000320996.14
ENST00000335272.10
ENST00000455418.7
CDS-3UTR GCA 90 bp CAAGATACTGGTCAGATTCTTCTTCACTCATCACTGGCTGCGCTTGTTCCCCTCCAAGACTCCATGAAGTaGTATATTTCCAACTTTTCT +
Preference number: 4 (lower is better)
Translates to: QDTGQILLHSSLAALVPLQDSMK*YISNFS
Trigger: AGAAAAGTTGGAAATATAGCACTTCATGGAGTCTTG...GAGGGGAACAAGCGCAGCCAGTGATGAGTGAAGAAGAATCTGACCAGTATCTTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000335272.10
ENST00000455418.7
CDS-3UTR CCA 90 bp ATTCAAGCTTCCAGGACTGACAGAGGAAAAACTGGATTCAGACAGAGAAAGCTGTTGGTCTTGACTGACTaGAATAATGCTGGGTCTTCA +
Preference number: 4 (lower is better)
Translates to: IQASRTDRGKTGFRQRKLLVLTD*NNAGSS
Trigger: TGAAGACCCAGCATTATTCCAGTCAGTCAAGACCAA...CAGCTTTCTCTGTCTGAATCCAGTTTTTCCTCTGTCAGTCCTGGAAGCTTGAAT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000320996.14
ENST00000335272.10
ENST00000455418.7
CDS-3UTR CCA 90 bp GTGCATGTGTGTGTATCATCACAAGCACACATCTGGGAAACGTCAACACTGCAAACATATATACACACGTaGTTGAGAACCTGTGCATGT +
Preference number: 4 (lower is better)
Translates to: VHVCVSSQAHIWETSTLQTYIHT*LRTCAC
Trigger: ACATGCACAGGTTCTCAACCACGTGTGTATATATGT...TTGCAGTGTTGACGTTTCCCAGATGTGTGCTTGTGATGATACACACACATGCAC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000320996.14
ENST00000335272.10
ENST00000455418.7
CDS-3UTR CCA 90 bp TGTGTGTATCATCACAAGCACACATCTGGGAAACGTCAACACTGCAAGATACTGACAAGTGTGTGTATCTaGATCTGTAGCTCTACATGC +
Preference number: 4 (lower is better)
Translates to: CVYHHKHTSGKRQHCKILTSVCI*ICSSTC
Trigger: GCATGTAGAGCTACAGATCCAGATACACACACTTGT...CAGTATCTTGCAGTGTTGACGTTTCCCAGATGTGTGCTTGTGATGATACACACA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000320996.14
ENST00000335272.10
ENST00000455418.7
CDS-3UTR TCA 90 bp CTGAAGATAGGTACAGTACTTTGGAGAAATTGTACTAATCCCTTCAGTATGTCTGGCCTCTCTTGGTCTTaGCTGACTGGAATAATGCTG +
Preference number: 4 (lower is better)
Translates to: LKIGTVLWRNCTNPFSMSGLSWS*LTGIML
Trigger: CAGCATTATTCCAGTCAGTCAAGACCAAGAGAGGCC...AGACATACTGAAGGGATTAGTACAATTTCTCCAAAGTACTGTACCTATCTTCAG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000320996.14
ENST00000335272.10
ENST00000455418.7
CDS-3UTR TCA 90 bp GTGCATGTGTGTGTATCATCACAAGCACACATCTGGGAAACGTCAACACTGCAACAAAACAAGACTCCATaGAGTGCTATATTTCCAACT +
Preference number: 4 (lower is better)
Translates to: VHVCVSSQAHIWETSTLQQNKTP*SAIFPT
Trigger: AGTTGGAAATATAGCACTTCATGGAGTCTTGTTTTG...TTGCAGTGTTGACGTTTCCCAGATGTGTGCTTGTGATGATACACACACATGCAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000320996.14
ENST00000335272.10
ENST00000455418.7
CDS-3UTR TCA 90 bp TGTGTGTATCATCACAAGCACACATCTGGGAAACGTCAACACTGCAAGATACTGACAAAAGACAGTTTGTaGCCTGAAGGCTTCAACAAT +
Preference number: 4 (lower is better)
Translates to: CVYHHKHTSGKRQHCKILTKDSL*PEGFNN
Trigger: ATTGTTGAAGCCTTCAGGTCACAAACTGTCTTTTGT...CAGTATCTTGCAGTGTTGACGTTTCCCAGATGTGTGCTTGTGATGATACACACA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000320996.14
ENST00000335272.10
ENST00000455418.7
CDS-3UTR TCA 90 bp GTCACTATCTCCTCCTTGAAGTGTGTGTTCCCACAAGAAGAGCAAAATGTCATCCATCAGTCTTTATCCTaGGTACACAAAGGATGTATG +
Preference number: 4 (lower is better)
Translates to: VTISSLKCVFPQEEQNVIHQSLS*VHKGCM
Trigger: CATACATCCTTTGTGTACTCAGGATAAAGACTGATG...GATGACATTTTGCTCTTCTTGTGGGAACACACACTTCAAGGAGGAGATAGTGAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000320996.14
ENST00000335272.10
ENST00000455418.7
CDS-3UTR TCA 90 bp GTCACTATCTCCTCCTTGAAGTGTGTGTTCCCACAAGAAGAGCAAAATGTCATCACACTTTGCAGACAATaGTTATGCTCTGACAAAACC +
Preference number: 4 (lower is better)
Translates to: VTISSLKCVFPQEEQNVITLCRQ*LCSDKT
Trigger: GGTTTTGTCAGAGCATAATCATTGTCTGCAAAGTGT...GATGACATTTTGCTCTTCTTGTGGGAACACACACTTCAAGGAGGAGATAGTGAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000320996.14
ENST00000335272.10
ENST00000455418.7
CDS-3UTR GCA 90 bp TTTAGGAGGGACAGGAGGTTACAAAAGACAGTTTGTGACCTGAAGGCTTCAACAATCAGCTTTGTAGTCTaGTGGTTCAACTTGACTTCT +
Preference number: 4 (lower is better)
Translates to: FRRDRRLQKTVCDLKASTISFVV*WFNLTS
Trigger: AGAAGTCAAGTTGAACCAGCAGACTACAAAGCTGAT...TGTTGAAGCCTTCAGGTCACAAACTGTCTTTTGTAACCTCCTGTCCCTCCTAAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000320996.14
ENST00000335272.10
ENST00000455418.7
CDS-3UTR GCA 90 bp CTTGACCTTGATTACGTAAACAGTTTGACATTGTCTCTGACCCTACAGGGGACTTTTTCTACTTTGCTTTaGAGTCCCCACCACTTGAAT +
Preference number: 4 (lower is better)
Translates to: LDLDYVNSLTLSLTLQGTFSTLL*SPHHLN
Trigger: ATTCAAGTGGTGGGGACTGCAAAGCAAAGTAGAAAA...AGTCCCCTGTAGGGTCAGAGACAATGTCAAACTGTTTACGTAATCAAGGTCAAG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENST00000335272.10
ENST00000455418.7
ENST00000634017.1
3UTR CAA 72 bp CTGAGTACACAAAGGATGTATGAAATGTGGGTTTTGTaGCTGAGGATAACAGGGTATTGCAATGCAGTAGTG +
Preference number: 4 (lower is better)
Translates to: LSTQRMYEMWVL*LRITGYCNAVV
Trigger: CACTACTGCATTGCAATACCCTGTTATCCTCAGCAACAAAACCCACATTTCATACATCCTTTGTGTACTCAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000320996.14
ENST00000335272.10
ENST00000455418.7
CDS-3UTR TCA 90 bp ATCCTGAGTACACAAAGGATGTATGAAATGTGGGTTTTGTTGCTGAGGATAACATCAAGCTTCCAGGACTaGCAGAGGAAAAACTGGATT +
Preference number: 4 (lower is better)
Translates to: ILSTQRMYEMWVLLLRITSSFQD*QRKNWI
Trigger: AATCCAGTTTTTCCTCTGTCAGTCCTGGAAGCTTGA...TGTTATCCTCAGCAACAAAACCCACATTTCATACATCCTTTGTGTACTCAGGAT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000320996.14
ENST00000335272.10
ENST00000455418.7
CDS-3UTR TCA 90 bp GGTTTTGTTGCTGAGGATAACAGGGTATTGCAATGCAGTAGTGATCCTACACATACAAAAGACAGTTTGTaGCCTGAAGGCTTCAACAAT +
Preference number: 4 (lower is better)
Translates to: GFVAEDNRVLQCSSDPTHTKDSL*PEGFNN
Trigger: ATTGTTGAAGCCTTCAGGTCACAAACTGTCTTTTGT...ATGTGTAGGATCACTACTGCATTGCAATACCCTGTTATCCTCAGCAACAAAACC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000320996.14
ENST00000335272.10
ENST00000455418.7
CDS-3UTR GCA 90 bp CAAGTGTGTGTATCTGGATCTGTAGCTCTACATGCGCTTTATATACAGCTACAGAACAGGGTATTGCAATaGAGTAGTGATCCTACACAT +
Preference number: 4 (lower is better)
Translates to: QVCVSGSVALHALYIQLQNRVLQ*SSDPTH
Trigger: ATGTGTAGGATCACTACTGCATTGCAATACCCTGTT...CTGTAGCTGTATATAAAGCGCATGTAGAGCTACAGATCCAGATACACACACTTG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000320996.14
ENST00000335272.10
ENST00000455418.7
CDS-3UTR GCA 90 bp ATGTGGGTTTTGTTGCTGAGGATAACAGGGTATTGCAATGCAGTAGTGATCCTAAGGATAACAGGGTATTaGAATGCAGTAGTGATCCTA +
Preference number: 4 (lower is better)
Translates to: MWVLLLRITGYCNAVVILRITGY*NAVVIL
Trigger: TAGGATCACTACTGCATTGCAATACCCTGTTATCCT...TAGGATCACTACTGCATTGCAATACCCTGTTATCCTCAGCAACAAAACCCACAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000320996.14
ENST00000335272.10
ENST00000455418.7
CDS-3UTR GCA 90 bp CAAGTGTGTGTATCTGGATCTGTAGCTCTACATGCGCTTTATATACAGCTACAGAGGATAACAGGGTATTaGAATGCAGTAGTGATCCTA +
Preference number: 4 (lower is better)
Translates to: QVCVSGSVALHALYIQLQRITGY*NAVVIL
Trigger: TAGGATCACTACTGCATTGCAATACCCTGTTATCCT...CTGTAGCTGTATATAAAGCGCATGTAGAGCTACAGATCCAGATACACACACTTG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000320996.14
ENST00000335272.10
ENST00000455418.7
CDS-3UTR CCA 90 bp TGTGTGTATCATCACAAGCACACATCTGGGAAACGTCAACACTGCAAGATACTGAGGATGTATGAAATGTaGGTTTTGTTGCTGAGGATA +
Preference number: 4 (lower is better)
Translates to: CVYHHKHTSGKRQHCKILRMYEM*VLLLRI
Trigger: TATCCTCAGCAACAAAACCCACATTTCATACATCCT...CAGTATCTTGCAGTGTTGACGTTTCCCAGATGTGTGCTTGTGATGATACACACA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000320996.14
ENST00000335272.10
ENST00000455418.7
3UTR CAA 72 bp ATCCTGAGTACACAAAGGATGTATGAAATGTGGGTTTaGTTGCTGAGGATAACAGGGTATTGCAATGCAGTA +
Preference number: 4 (lower is better)
Translates to: ILSTQRMYEMWV*LLRITGYCNAV
Trigger: TACTGCATTGCAATACCCTGTTATCCTCAGCAACAAAACCCACATTTCATACATCCTTTGTGTACTCAGGAT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000320996.14
ENST00000335272.10
ENST00000455418.7
CDS-3UTR TCA 90 bp ACTAGGTATTTTACATTCACCACACATTCCCTCAAATCTCCACAGTTGTTAGAACTATATCCTATCATGTaGGCTCTGAGGAATCTAGAC +
Preference number: 4 (lower is better)
Translates to: TRYFTFTTHSLKSPQLLELYPIM*ALRNLD
Trigger: GTCTAGATTCCTCAGAGCTCACATGATAGGATATAG...TTCTAACAACTGTGGAGATTTGAGGGAATGTGTGGTGAATGTAAAATACCTAGT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000320996.14
ENST00000335272.10
ENST00000455418.7
CDS-3UTR TCA 90 bp CTGAAGATAGGTACAGTACTTTGGAGAAATTGTACTAATCCCTTCAGTATGTCTCTATATCCTATCATGTaGGCTCTGAGGAATCTAGAC +
Preference number: 4 (lower is better)
Translates to: LKIGTVLWRNCTNPFSMSLYPIM*ALRNLD
Trigger: GTCTAGATTCCTCAGAGCTCACATGATAGGATATAG...AGACATACTGAAGGGATTAGTACAATTTCTCCAAAGTACTGTACCTATCTTCAG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000320996.14
ENST00000335272.10
ENST00000455418.7
3UTR CAA 72 bp CCCTCAGGGCAAACAAGTAAAAACTGGCCTGTAACTTaGCTCCTTACTTTATATTGTCAAATTTGGCTACAA +
Preference number: 4 (lower is better)
Translates to: PSGQTSKNWPVT*LLTLYCQIWLQ
Trigger: TTGTAGCCAAATTTGACAATATAAAGTAAGGAGCAAAGTTACAGGCCAGTTTTTACTTGTTTGCCCTGAGGG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000320996.14
ENST00000335272.10
ENST00000455418.7
CDS-3UTR GCA 90 bp ACTAGGTATTTTACATTCACCACACATTCCCTCAAATCTCCACAGTTGTTAGAATTTTCTACTTTGCTTTaGAGTCCCCACCACTTGAAT +
Preference number: 4 (lower is better)
Translates to: TRYFTFTTHSLKSPQLLEFSTLL*SPHHLN
Trigger: ATTCAAGTGGTGGGGACTGCAAAGCAAAGTAGAAAA...TTCTAACAACTGTGGAGATTTGAGGGAATGTGTGGTGAATGTAAAATACCTAGT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENST00000320996.14
ENST00000335272.10
ENST00000455418.7
CDS-3UTR CCA 90 bp CACAAAATTAGCAATAATCTTCCTCGCACCAAACACTTTGCAGACAATGATTATTTGGTCTTGACTGACTaGAATAATGCTGGGTCTTCA +
Preference number: 4 (lower is better)
Translates to: HKISNNLPRTKHFADNDYLVLTD*NNAGSS
Trigger: TGAAGACCCAGCATTATTCCAGTCAGTCAAGACCAA...ATAATCATTGTCTGCAAAGTGTTTGGTGCGAGGAAGATTATTGCTAATTTTGTG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000320996.14
ENST00000335272.10
ENST00000455418.7
CDS-3UTR CCA 90 bp TTTCACAAAATTAGCAATAATCTTCCTCGCACCAAACACTTTGCAGACAATGATTTGGTCTTGACTGACTaGAATAATGCTGGGTCTTCA +
Preference number: 4 (lower is better)
Translates to: FHKISNNLPRTKHFADNDLVLTD*NNAGSS
Trigger: TGAAGACCCAGCATTATTCCAGTCAGTCAAGACCAA...ATCATTGTCTGCAAAGTGTTTGGTGCGAGGAAGATTATTGCTAATTTTGTGAAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000320996.14
ENST00000335272.10
ENST00000455418.7
CDS-3UTR CCA 90 bp ACTAGGTATTTTACATTCACCACACATTCCCTCAAATCTCCACAGTTGTTAGAAACATATATACACACGTaGTTGAGAACCTGTGCATGT +
Preference number: 4 (lower is better)
Translates to: TRYFTFTTHSLKSPQLLETYIHT*LRTCAC
Trigger: ACATGCACAGGTTCTCAACCACGTGTGTATATATGT...TTCTAACAACTGTGGAGATTTGAGGGAATGTGTGGTGAATGTAAAATACCTAGT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000320996.14
ENST00000335272.10
ENST00000455418.7
CDS-3UTR TCA 90 bp CTGAAGATAGGTACAGTACTTTGGAGAAATTGTACTAATCCCTTCAGTATGTCTTACACAAAGGATGTATaGAATGTGGGTTTTGTTGCT +
Preference number: 4 (lower is better)
Translates to: LKIGTVLWRNCTNPFSMSYTKDV*NVGFVA
Trigger: AGCAACAAAACCCACATTTCATACATCCTTTGTGTA...AGACATACTGAAGGGATTAGTACAATTTCTCCAAAGTACTGTACCTATCTTCAG
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000320996.14
ENST00000335272.10
ENST00000455418.7
CDS CCA 90 bp GTGACTCGGCAGGATGAGCGGCCAGCACTCCCGACGGAGGCCCTCTaGGAGAAAAGAGGCCCTTGGCCTCGAGACCCAGGAAAGCGGGCT +
Preference number: 5 (lower is better)
Translates to: VTRQDERPALPTEAL*EKRGPWPRDPGKRA
Trigger: AGCCCGCTTTCCTGGGTCTCGAGGCCAAGGGCCTCTTTTCTCCCAGAGGGCCTCCGTCGGGAGTGCTGGCCGCTCATCCTGCCGAGTCAC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000415296.5
CDS CCA 90 bp CGGGCTGTTCAGGAGTTGGTTCGCGCAGTTACACCGAAAGCGCCGTaGGCCTCAAAGCCGCAGCCCGGAGGTCGCTGGCTTGCTCTGTGT +
Preference number: 5 (lower is better)
Translates to: RAVQELVRAVTPKAP*ASKPQPGGRWLALC
Trigger: ACACAGAGCAAGCCAGCGACCTCCGGGCTGCGGCTTTGAGGCCCACGGCGCTTTCGGTGTAACTGCGCGAACCAACTCCTGAACAGCCCG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000415296.5
CDS CCA 90 bp GAGGCCCTTGGCCTCGAGACCCAGGAAAGCGGGCTGTTCAGGAGTTaGTTCGCGCAGTTACACCGAAAGCGCCGTGGGCCTCAAAGCCGC +
Preference number: 5 (lower is better)
Translates to: EALGLETQESGLFRS*FAQLHRKRRGPQSR
Trigger: GCGGCTTTGAGGCCCACGGCGCTTTCGGTGTAACTGCGCGAACCAACTCCTGAACAGCCCGCTTTCCTGGGTCTCGAGGCCAAGGGCCTC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000415296.5
CDS-3UTR CAA 90 bp CAGATGTCCACCAGTCTCTTGGCGGGGCCTCCTCACCGCACGCAGGCCAGACTCAGCTCCTTCTTCCAGTaGGGTCCCAAAGGGCCTCTC +
Preference number: 5 (lower is better)
Translates to: QMSTSLLAGPPHRTQARLSSFFQ*GPKGPL
Trigger: GAGAGGCCCTTTGGGACCCAACTGGAAGAAGGAGCT...GAGTCTGGCCTGCGTGCGGTGAGGAGGCCCCGCCAAGAGACTGGTGGACATCTG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000320996.14
ENST00000335272.10
ENST00000455418.7
CDS-3UTR CAA 90 bp TGGCGGGGCCTCCTCACCGCACGCAGGCCAGACTCACACTGCATCTTAAACTGTATGTCCACCAGTCTCTaGGCGGGGCCTCCTCACCGC +
Preference number: 5 (lower is better)
Translates to: WRGLLTARRPDSHCILNCMSTSL*AGPPHR
Trigger: GCGGTGAGGAGGCCCCGCCAAGAGACTGGTGGACAT...ACAGTTTAAGATGCAGTGTGAGTCTGGCCTGCGTGCGGTGAGGAGGCCCCGCCA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000320996.14
ENST00000335272.10
ENST00000455418.7
CDS GCA 90 bp GAAAGCGCCGTGGGCCTCAAAGCCGCAGCCCGGAGGTCGCTGGCTTaGTCTGTGTCAGACACGGTTCTAGGCAGTGGGGATGCATCTAGA +
Preference number: 5 (lower is better)
Translates to: ESAVGLKAAARRSLA*SVSDTVLGSGDASR
Trigger: TCTAGATGCATCCCCACTGCCTAGAACCGTGTCTGACACAGAGCAAGCCAGCGACCTCCGGGCTGCGGCTTTGAGGCCCACGGCGCTTTC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000415296.5
CDS-3UTR CAA 90 bp TCAGATGTCCACCAGTCTCTTGGCGGGGCCTCCTCACCGCACGCAGGCCAGACTAGCTCCTTCTTCCAGTaGGGTCCCAAAGGGCCTCTC +
Preference number: 5 (lower is better)
Translates to: SDVHQSLGGASSPHAGQTSSFFQ*GPKGPL
Trigger: GAGAGGCCCTTTGGGACCCAACTGGAAGAAGGAGCT...AGTCTGGCCTGCGTGCGGTGAGGAGGCCCCGCCAAGAGACTGGTGGACATCTGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000320996.14
ENST00000335272.10
ENST00000455418.7
CDS-3UTR CAA 90 bp TCCACCAGTCTCTTGGCGGGGCCTCCTCACCGCACGCAGGCCAGACTCACACTGGTCACTATCTCCTCCTaGAAGTGTGTGTTCCCACAA +
Preference number: 5 (lower is better)
Translates to: STSLLAGPPHRTQARLTLVTISS*KCVFPQ
Trigger: TTGTGGGAACACACACTTCAAGGAGGAGATAGTGAC...CAGTGTGAGTCTGGCCTGCGTGCGGTGAGGAGGCCCCGCCAAGAGACTGGTGGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000320996.14
ENST00000335272.10
ENST00000455418.7
CDS GCA 90 bp TGGCAAAACCACACGGCACTTCTCCATCAACAAATCTCCCATCACTaGCGTCCCACGGCCTCGCTCGCGCCCACAGACCCACTCACAATT +
Preference number: 5 (lower is better)
Translates to: WQNHTALLHQQISHH*RPTASLAPTDPLTI
Trigger: AATTGTGAGTGGGTCTGTGGGCGCGAGCGAGGCCGTGGGACGGCAGTGATGGGAGATTTGTTGATGGAGAAGTGCCGTGTGGTTTTGCCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000436663.1
ENST00000634017.1
CDS-3UTR CAA 90 bp TGGCGGGGCCTCCTCACCGCACGCAGGCCAGACTCACACTGCATCTTAAACTGTTGCAGTCCCCACCACTaGAATTTGATGGTCACCAGC +
Preference number: 5 (lower is better)
Translates to: WRGLLTARRPDSHCILNCCSPHH*NLMVTS
Trigger: GCTGGTGACCATCAAATTCAAGTGGTGGGGACTGCA...ACAGTTTAAGATGCAGTGTGAGTCTGGCCTGCGTGCGGTGAGGAGGCCCCGCCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000320996.14
ENST00000335272.10
ENST00000455418.7
CDS-3UTR CAA 90 bp CAGTCAGATGTCCACCAGTCTCTTGGCGGGGCCTCCTCACCGCACGCAGGCCAGTATATACACACGTGGTaGAGAACCTGTGCATGTGTG +
Preference number: 5 (lower is better)
Translates to: QSDVHQSLGGASSPHAGQYIHTW*RTCACV
Trigger: CACACATGCACAGGTTCTCAACCACGTGTGTATATA...CTGGCCTGCGTGCGGTGAGGAGGCCCCGCCAAGAGACTGGTGGACATCTGACTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000320996.14
ENST00000335272.10
ENST00000455418.7
CDS CCA 90 bp GAAAGGGCCCATGAACACTGGGAACATGTGGTAGAGTGTGGCGGCTaGTTGGTGGGACACAGGAAGGAACCATGCAGCGAGGTGCAGTTA +
Preference number: 5 (lower is better)
Translates to: ERAHEHWEHVVECGG*LVGHRKEPCSEVQL
Trigger: TAACTGCACCTCGCTGCATGGTTCCTTCCTGTGTCCCACCAACCAGCCGCCACACTCTACCACATGTTCCCAGTGTTCATGGGCCCTTTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000460566.5
CDS-3UTR CAA 90 bp CAGTCAGATGTCCACCAGTCTCTTGGCGGGGCCTCCTCACCGCACGCAGGCCAGGTCTGCTGGTTCAACTaGACTTCTATCTGCAATATC +
Preference number: 5 (lower is better)
Translates to: QSDVHQSLGGASSPHAGQVCWFN*TSICNI
Trigger: GATATTGCAGATAGAAGTCAAGTTGAACCAGCAGAC...CTGGCCTGCGTGCGGTGAGGAGGCCCCGCCAAGAGACTGGTGGACATCTGACTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000320996.14
ENST00000335272.10
ENST00000455418.7
CDS-3UTR CAA 90 bp AGTGGGGGAGGGATGCAGGACATGTGGGAAAACGAGGAGCAGGCAGGGCAGGACGTCACTATCTCCTCCTaGAAGTGTGTGTTCCCACAA +
Preference number: 5 (lower is better)
Translates to: SGGGMQDMWENEEQAGQDVTISS*KCVFPQ
Trigger: TTGTGGGAACACACACTTCAAGGAGGAGATAGTGAC...GTCCTGCCCTGCCTGCTCCTCGTTTTCCCACATGTCCTGCATCCCTCCCCCACT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000320996.14
ENST00000335272.10
ENST00000455418.7
CDS-3UTR CAA 90 bp CCAGTGGGGGAGGGATGCAGGACATGTGGGAAAACGAGGAGCAGGCAGGGCAGGGAGGATAACAGGGTATaGCAATGCAGTAGTGATCCT +
Preference number: 5 (lower is better)
Translates to: PVGEGCRTCGKTRSRQGREDNRV*QCSSDP
Trigger: AGGATCACTACTGCATTGCAATACCCTGTTATCCTC...CCTGCCCTGCCTGCTCCTCGTTTTCCCACATGTCCTGCATCCCTCCCCCACTGG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000320996.14
ENST00000335272.10
ENST00000455418.7
CDS-3UTR CAA 90 bp GGCCTCCTCACCGCACGCAGGCCAGACTCACACTGCATCTTAAACTGTTCCTATCATCACTGGCTGCGCTaGTTCCCCTCACTTGACCTT +
Preference number: 5 (lower is better)
Translates to: GLLTARRPDSHCILNCSYHHWLR*FPSLDL
Trigger: AAGGTCAAGTGAGGGGAACAAGCGCAGCCAGTGATG...ATAGGAACAGTTTAAGATGCAGTGTGAGTCTGGCCTGCGTGCGGTGAGGAGGCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000320996.14
ENST00000335272.10
ENST00000455418.7
CDS-3UTR CAA 90 bp CTCTTGGCGGGGCCTCCTCACCGCACGCAGGCCAGACTCACACTGCATCTTAAACTCGCACCAAACACTTaGCAGACAATGATTATGCTC +
Preference number: 5 (lower is better)
Translates to: LLAGPPHRTQARLTLHLKLAPNT*QTMIML
Trigger: GAGCATAATCATTGTCTGCAAAGTGTTTGGTGCGAG...TTTAAGATGCAGTGTGAGTCTGGCCTGCGTGCGGTGAGGAGGCCCCGCCAAGAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000320996.14
ENST00000335272.10
ENST00000455418.7
CDS-3UTR CAA 90 bp CTCTTGGCGGGGCCTCCTCACCGCACGCAGGCCAGACTCACACTGCATCTTAAAGTTCCCAAGTCTGGTTaGTGCCATGTTTCGATTTTA +
Preference number: 5 (lower is better)
Translates to: LLAGPPHRTQARLTLHLKVPKSG*CHVSIL
Trigger: TAAAATCGAAACATGGCACAAACCAGACTTGGGAAC...TTTAAGATGCAGTGTGAGTCTGGCCTGCGTGCGGTGAGGAGGCCCCGCCAAGAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000320996.14
ENST00000335272.10
ENST00000455418.7
CDS-3UTR CAA 90 bp GACATGTGGGAAAACGAGGAGCAGGCAGGGCAGGACTGTCAGCAAATCAGATTACATCACTGGCTGCGCTaGTTCCCCTCACTTGACCTT +
Preference number: 5 (lower is better)
Translates to: DMWENEEQAGQDCQQIRLHHWLR*FPSLDL
Trigger: AAGGTCAAGTGAGGGGAACAAGCGCAGCCAGTGATG...TAATCTGATTTGCTGACAGTCCTGCCCTGCCTGCTCCTCGTTTTCCCACATGTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000320996.14
ENST00000335272.10
ENST00000455418.7
CDS-3UTR CAA 90 bp TGGTCAGATTCTTCTTCACTCATCACTGGCTGCGCTTGTTCCCCTCACTTGACCCATCACTGGCTGCGCTaGTTCCCCTCACTTGACCTT +
Preference number: 5 (lower is better)
Translates to: WSDSSSLITGCACSPHLTHHWLR*FPSLDL
Trigger: AAGGTCAAGTGAGGGGAACAAGCGCAGCCAGTGATG...GGTCAAGTGAGGGGAACAAGCGCAGCCAGTGATGAGTGAAGAAGAATCTGACCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000335272.10
ENST00000455418.7
ENST00000634017.1
CDS-3UTR CAA 90 bp TCAGATGTCCACCAGTCTCTTGGCGGGGCCTCCTCACCGCACGCAGGCCAGACTAACTGGCCTGTAACTTaGCTCCTTACTTTATATTGT +
Preference number: 5 (lower is better)
Translates to: SDVHQSLGGASSPHAGQTNWPVT*LLTLYC
Trigger: ACAATATAAAGTAAGGAGCAAAGTTACAGGCCAGTT...AGTCTGGCCTGCGTGCGGTGAGGAGGCCCCGCCAAGAGACTGGTGGACATCTGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000320996.14
ENST00000335272.10
ENST00000455418.7
CDS-3UTR CAA 90 bp CTCTTGGCGGGGCCTCCTCACCGCACGCAGGCCAGACTCACACTGCATCTTAAAGAAATGTGGGTTTTGTaGCTGAGGATAACAGGGTAT +
Preference number: 5 (lower is better)
Translates to: LLAGPPHRTQARLTLHLKEMWVL*LRITGY
Trigger: ATACCCTGTTATCCTCAGCAACAAAACCCACATTTC...TTTAAGATGCAGTGTGAGTCTGGCCTGCGTGCGGTGAGGAGGCCCCGCCAAGAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000320996.14
ENST00000335272.10
ENST00000455418.7
CDS GCA 90 bp GTCTCTGACCCTACAGGGGACTCATCTAGACATCAGCAGCCGACGTaGCTCGAACGGAACCCCTCTTACGCATTGTTTCTAGTTCTTTCT +
Preference number: 5 (lower is better)
Translates to: VSDPTGDSSRHQQPT*LERNPSYALFLVLS
Trigger: AGAAAGAACTAGAAACAATGCGTAAGAGGGGTTCCGTTCGAGGCACGTCGGCTGCTGATGTCTAGATGAGTCCCCTGTAGGGTCAGAGAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000335272.10
ENST00000455418.7
ENST00000634017.1
CDS-3UTR CAA 90 bp GACATGTGGGAAAACGAGGAGCAGGCAGGGCAGGACTGTCAGCAAATCAGATTAACCACACGGAATTCCTaGATCAGCACCATCTTCCCG +
Preference number: 5 (lower is better)
Translates to: DMWENEEQAGQDCQQIRLTTRNS*ISTIFP
Trigger: CGGGAAGATGGTGCTGATCAAGGAATTCCGTGTGGT...TAATCTGATTTGCTGACAGTCCTGCCCTGCCTGCTCCTCGTTTTCCCACATGTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000320996.14
ENST00000335272.10
ENST00000455418.7
CDS-3UTR CAA 90 bp ATACTGGTCAGATTCTTCTTCACTCATCACTGGCTGCGCTTGTTCCCCTCACTTAGCTCCTTCTTCCAGTaGGGTCCCAAAGGGCCTCTC +
Preference number: 5 (lower is better)
Translates to: ILVRFFFTHHWLRLFPSLSSFFQ*GPKGPL
Trigger: GAGAGGCCCTTTGGGACCCAACTGGAAGAAGGAGCT...AAGTGAGGGGAACAAGCGCAGCCAGTGATGAGTGAAGAAGAATCTGACCAGTAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000335272.10
ENST00000455418.7
ENST00000634017.1
CDS-3UTR CAA 90 bp CTGGTCAGATTCTTCTTCACTCATCACTGGCTGCGCTTGTTCCCCTCACTTGACTGCAGTCCCCACCACTaGAATTTGATGGTCACCAGC +
Preference number: 5 (lower is better)
Translates to: LVRFFFTHHWLRLFPSLDCSPHH*NLMVTS
Trigger: GCTGGTGACCATCAAATTCAAGTGGTGGGGACTGCA...GTCAAGTGAGGGGAACAAGCGCAGCCAGTGATGAGTGAAGAAGAATCTGACCAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000335272.10
ENST00000455418.7
ENST00000634017.1
CDS-3UTR CAA 90 bp TGGTCAGATTCTTCTTCACTCATCACTGGCTGCGCTTGTTCCCCTCACTTGACCTGCAGTCCCCACCACTaGAATTTGATGGTCACCAGC +
Preference number: 5 (lower is better)
Translates to: WSDSSSLITGCACSPHLTCSPHH*NLMVTS
Trigger: GCTGGTGACCATCAAATTCAAGTGGTGGGGACTGCA...GGTCAAGTGAGGGGAACAAGCGCAGCCAGTGATGAGTGAAGAAGAATCTGACCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000335272.10
ENST00000455418.7
ENST00000634017.1
CDS-3UTR CAA 90 bp GGTTTTGTTGCTGAGGATAACAGGGTATTGCAATGCAGTAGTGATCCTACACATATGTCCACCAGTCTCTaGGCGGGGCCTCCTCACCGC +
Preference number: 5 (lower is better)
Translates to: GFVAEDNRVLQCSSDPTHMSTSL*AGPPHR
Trigger: GCGGTGAGGAGGCCCCGCCAAGAGACTGGTGGACAT...ATGTGTAGGATCACTACTGCATTGCAATACCCTGTTATCCTCAGCAACAAAACC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000320996.14
ENST00000335272.10
ENST00000455418.7
CDS TCA 90 bp CCAGCTCCTTCTTCCAGTTGGGTCCCAAAGGGCCTCTCTTGGTCTTaGCTGACTGGAATAATGCTGGGTCTTCATCAGCTTTGTAGTCTG +
Preference number: 5 (lower is better)
Translates to: PAPSSSWVPKGLSWS*LTGIMLGLHQLCSL
Trigger: CAGACTACAAAGCTGATGAAGACCCAGCATTATTCCAGTCAGTCAAGACCAAGAGAGGCCCTTTGGGACCCAACTGGAAGAAGGAGCTGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENST00000320996.14
ENST00000335272.10
ENST00000415296.5
ENST00000455418.7
ENST00000477861.1
ENST00000634017.1
CDS-3UTR CAA 90 bp CAAGATACTGGTCAGATTCTTCTTCACTCATCACTGGCTGCGCTTGTTCCCCTCACCACACGGAATTCCTaGATCAGCACCATCTTCCCG +
Preference number: 5 (lower is better)
Translates to: QDTGQILLHSSLAALVPLTTRNS*ISTIFP
Trigger: CGGGAAGATGGTGCTGATCAAGGAATTCCGTGTGGT...GAGGGGAACAAGCGCAGCCAGTGATGAGTGAAGAAGAATCTGACCAGTATCTTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000335272.10
ENST00000455418.7
CDS-3UTR CAA 90 bp GGCCTCCTCACCGCACGCAGGCCAGACTCACACTGCATCTTAAACTGTTCCTATCTCGCACCAAACACTTaGCAGACAATGATTATGCTC +
Preference number: 5 (lower is better)
Translates to: GLLTARRPDSHCILNCSYLAPNT*QTMIML
Trigger: GAGCATAATCATTGTCTGCAAAGTGTTTGGTGCGAG...ATAGGAACAGTTTAAGATGCAGTGTGAGTCTGGCCTGCGTGCGGTGAGGAGGCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000320996.14
ENST00000335272.10
ENST00000455418.7
CDS-3UTR CAA 90 bp AAAGTGGCAGCCGTTTCTGACCAGCACTCTCATGATGCCTATTCAGAATCTGTCACCACACGGAATTCCTaGATCAGCACCATCTTCCCG +
Preference number: 5 (lower is better)
Translates to: KVAAVSDQHSHDAYSESVTTRNS*ISTIFP
Trigger: CGGGAAGATGGTGCTGATCAAGGAATTCCGTGTGGT...GACAGATTCTGAATAGGCATCATGAGAGTGCTGGTCAGAAACGGCTGCCACTTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000320996.14
ENST00000335272.10
ENST00000455418.7
CDS-3UTR CAA 90 bp CAGGACATGTGGGAAAACGAGGAGCAGGCAGGGCAGGACTGTCAGCAAATCAGAATTCATTCTGCAGAATaGTTCTACAGTAGGGGTACG +
Preference number: 5 (lower is better)
Translates to: QDMWENEEQAGQDCQQIRIHSAE*FYSRGT
Trigger: CGTACCCCTACTGTAGAACAATTCTGCAGAATGAAT...TCTGATTTGCTGACAGTCCTGCCCTGCCTGCTCCTCGTTTTCCCACATGTCCTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000455418.7
CDS-3UTR CAA 90 bp GGCCTCCTCACCGCACGCAGGCCAGACTCACACTGCATCTTAAACTGTTCCTATAGGAATCTAGACCATTaGCATAGTTTCCAAGCTGTA +
Preference number: 5 (lower is better)
Translates to: GLLTARRPDSHCILNCSYRNLDH*HSFQAV
Trigger: TACAGCTTGGAAACTATGCAAATGGTCTAGATTCCT...ATAGGAACAGTTTAAGATGCAGTGTGAGTCTGGCCTGCGTGCGGTGAGGAGGCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000320996.14
ENST00000335272.10
ENST00000455418.7
CDS GCA 90 bp CTCATGAAACACCAAGGAGCCCTCGGGAGCAATCATCCTCACGAATaGAGGCACTTTGCTGGGAGAAGAGAGATACTGGATATATTTAAC +
Preference number: 5 (lower is better)
Translates to: LMKHQGALGSNHPHE*RHFAGRREILDIFN
Trigger: GTTAAATATATCCAGTATCTCTCTTCTCCCAGCAAAGTGCCTGCATTCGTGAGGATGATTGCTCCCGAGGGCTCCTTGGTGTTTCATGAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000477861.1
CDS-3UTR CAA 90 bp TGTGTGTATCATCACAAGCACACATCTGGGAAACGTCAACACTGCAAGATACTGCCCAAAGGGCCTCTCTaGGTCTTGACTGACTGGAAT +
Preference number: 5 (lower is better)
Translates to: CVYHHKHTSGKRQHCKILPKGPL*VLTDWN
Trigger: ATTCCAGTCAGTCAAGACCAAGAGAGGCCCTTTGGG...CAGTATCTTGCAGTGTTGACGTTTCCCAGATGTGTGCTTGTGATGATACACACA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000320996.14
ENST00000335272.10
ENST00000455418.7
CDS-3UTR CAA 90 bp CTTGACCTTGATTACGTAAACAGTTTGACATTGTCTCTGACCCTACAGGGGACTCCCAAAGGGCCTCTCTaGGTCTTGACTGACTGGAAT +
Preference number: 5 (lower is better)
Translates to: LDLDYVNSLTLSLTLQGTPKGPL*VLTDWN
Trigger: ATTCCAGTCAGTCAAGACCAAGAGAGGCCCTTTGGG...AGTCCCCTGTAGGGTCAGAGACAATGTCAAACTGTTTACGTAATCAAGGTCAAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000335272.10
ENST00000455418.7
ENST00000634017.1
CDS-3UTR CAA 90 bp ATTCTATTCAAGCTTCCAGGACTGACAGAGGAAAAACTGGATTCAGACAGAGAAAGCTCCTTCTTCCAGTaGGGTCCCAAAGGGCCTCTC +
Preference number: 5 (lower is better)
Translates to: ILFKLPGLTEEKLDSDRESSFFQ*GPKGPL
Trigger: GAGAGGCCCTTTGGGACCCAACTGGAAGAAGGAGCT...TTCTCTGTCTGAATCCAGTTTTTCCTCTGTCAGTCCTGGAAGCTTGAATAGAAT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000320996.14
ENST00000335272.10
ENST00000455418.7
CDS-3UTR CAA 90 bp ATACTGGTCAGATTCTTCTTCACTCATCACTGGCTGCGCTTGTTCCCCTCACTTGTAAACAGTTTGACATaGTCTCTGACCCTACAGGGG +
Preference number: 5 (lower is better)
Translates to: ILVRFFFTHHWLRLFPSLVNSLT*SLTLQG
Trigger: CCCCTGTAGGGTCAGAGACAATGTCAAACTGTTTAC...AAGTGAGGGGAACAAGCGCAGCCAGTGATGAGTGAAGAAGAATCTGACCAGTAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000335272.10
ENST00000455418.7
ENST00000634017.1
CDS-3UTR CAA 90 bp GTGGCAGCCGTTTCTGACCAGCACTCTCATGATGCCTATTCAGAATCTGTCCTGCCTACACATCCTTCCTaGTCTGATTCACTGAAATCA +
Preference number: 5 (lower is better)
Translates to: VAAVSDQHSHDAYSESVLPTHPS*SDSLKS
Trigger: TGATTTCAGTGAATCAGACAAGGAAGGATGTGTAGG...CAGGACAGATTCTGAATAGGCATCATGAGAGTGCTGGTCAGAAACGGCTGCCAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000320996.14
ENST00000335272.10
ENST00000455418.7
CDS-3UTR CAA 90 bp GCAAGATACTGGTCAGATTCTTCTTCACTCATCACTGGCTGCGCTTGTTCCCCTCTCGCACCAAACACTTaGCAGACAATGATTATGCTC +
Preference number: 5 (lower is better)
Translates to: ARYWSDSSSLITGCACSPLAPNT*QTMIML
Trigger: GAGCATAATCATTGTCTGCAAAGTGTTTGGTGCGAG...AGGGGAACAAGCGCAGCCAGTGATGAGTGAAGAAGAATCTGACCAGTATCTTGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000335272.10
ENST00000455418.7
CDS-3UTR CAA 90 bp ATGTGGGAAAACGAGGAGCAGGCAGGGCAGGACTGTCAGCAAATCAGATTACTAGTTCCCAAGTCTGGTTaGTGCCATGTTTCGATTTTA +
Preference number: 5 (lower is better)
Translates to: MWENEEQAGQDCQQIRLLVPKSG*CHVSIL
Trigger: TAAAATCGAAACATGGCACAAACCAGACTTGGGAAC...TAGTAATCTGATTTGCTGACAGTCCTGCCCTGCCTGCTCCTCGTTTTCCCACAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000320996.14
ENST00000335272.10
ENST00000455418.7
CDS-3UTR CAA 90 bp TGCAAGATACTGGTCAGATTCTTCTTCACTCATCACTGGCTGCGCTTGTTCCCCAACCCCTCTTACGCATaGTTTCTAGTTCTTTCTGAG +
Preference number: 5 (lower is better)
Translates to: CKILVRFFFTHHWLRLFPNPSYA*FLVLSE
Trigger: CTCAGAAAGAACTAGAAACAATGCGTAAGAGGGGTT...GGGGAACAAGCGCAGCCAGTGATGAGTGAAGAAGAATCTGACCAGTATCTTGCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000335272.10
ENST00000455418.7
ENST00000634017.1
CDS-3UTR CAA 90 bp GTGGCAGCCGTTTCTGACCAGCACTCTCATGATGCCTATTCAGAATCTGTCCTGAGGAATCTAGACCATTaGCATAGTTTCCAAGCTGTA +
Preference number: 5 (lower is better)
Translates to: VAAVSDQHSHDAYSESVLRNLDH*HSFQAV
Trigger: TACAGCTTGGAAACTATGCAAATGGTCTAGATTCCT...CAGGACAGATTCTGAATAGGCATCATGAGAGTGCTGGTCAGAAACGGCTGCCAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000320996.14
ENST00000335272.10
ENST00000455418.7
CDS-3UTR CAA 90 bp CAAGTGTGTGTATCTGGATCTGTAGCTCTACATGCGCTTTATATACAGCTACAGCTGATGACGTCCTACTaGAGAGCACATCCCACAGTC +
Preference number: 5 (lower is better)
Translates to: QVCVSGSVALHALYIQLQLMTSY*RAHPTV
Trigger: GACTGTGGGATGTGCTCTCAAGTAGGACGTCATCAG...CTGTAGCTGTATATAAAGCGCATGTAGAGCTACAGATCCAGATACACACACTTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000320996.14
ENST00000335272.10
ENST00000455418.7
CDS GCA 90 bp GACTTCAATTCCTTCTCCACCACCAGTCTCATTCTTACTAGCTTCTaGAACAGAGTAAAGCTGCCCAACCTGATACTCCTGAACAGAACA +
Preference number: 5 (lower is better)
Translates to: DFNSFSTTSLILTSF*NRVKLPNLILLNRT
Trigger: TGTTCTGTTCAGGAGTATCAGGTTGGGCAGCTTTACTCTGTTGCAGAAGCTAGTAAGAATGAGACTGGTGGTGGAGAAGGAATTGAAGTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENST00000320996.14
ENST00000335272.10
ENST00000415296.5
ENST00000436663.1
ENST00000455418.7
ENST00000460566.5
ENST00000471825.1
ENST00000634017.1
CDS GCA 90 bp TACACAGAAAACAAATCGCCTTCTCTCTTACTCTGGTCTCTTTGCTaGACAGACGTACTAGACTTCACTCCAAGCTCACTTCGGCATAGA +
Preference number: 5 (lower is better)
Translates to: YTENKSPSLLLWSLC*TDVLDFTPSSLRHR
Trigger: TCTATGCCGAAGTGAGCTTGGAGTGAAGTCTAGTACGTCTGTGCAGCAAAGAGACCAGAGTAAGAGAGAAGGCGATTTGTTTTCTGTGTA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000465179.1
CDS-3UTR CAA 90 bp CTTGACCTTGATTACGTAAACAGTTTGACATTGTCTCTGACCCTACAGGGGACTGTAAACAGTTTGACATaGTCTCTGACCCTACAGGGG +
Preference number: 5 (lower is better)
Translates to: LDLDYVNSLTLSLTLQGTVNSLT*SLTLQG
Trigger: CCCCTGTAGGGTCAGAGACAATGTCAAACTGTTTAC...AGTCCCCTGTAGGGTCAGAGACAATGTCAAACTGTTTACGTAATCAAGGTCAAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000335272.10
ENST00000455418.7
ENST00000634017.1
CDS-3UTR CAA 90 bp TGCAAGATACTGGTCAGATTCTTCTTCACTCATCACTGGCTGCGCTTGTTCCCCGATTACGTAAACAGTTaGACATTGTCTCTGACCCTA +
Preference number: 5 (lower is better)
Translates to: CKILVRFFFTHHWLRLFPDYVNS*TLSLTL
Trigger: TAGGGTCAGAGACAATGTCAAACTGTTTACGTAATC...GGGGAACAAGCGCAGCCAGTGATGAGTGAAGAAGAATCTGACCAGTATCTTGCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000335272.10
ENST00000455418.7
ENST00000634017.1
CDS-3UTR CAA 90 bp GTGCATGTGTGTGTATCATCACAAGCACACATCTGGGAAACGTCAACACTGCAAGAGGATAACAGGGTATaGCAATGCAGTAGTGATCCT +
Preference number: 5 (lower is better)
Translates to: VHVCVSSQAHIWETSTLQEDNRV*QCSSDP
Trigger: AGGATCACTACTGCATTGCAATACCCTGTTATCCTC...TTGCAGTGTTGACGTTTCCCAGATGTGTGCTTGTGATGATACACACACATGCAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000320996.14
ENST00000335272.10
ENST00000455418.7
CDS-3UTR CAA 90 bp TGTGCATGTGTGTGTATCATCACAAGCACACATCTGGGAAACGTCAACACTGCAAACCCCTCTTACGCATaGTTTCTAGTTCTTTCTGAG +
Preference number: 5 (lower is better)
Translates to: CACVCIITSTHLGNVNTANPSYA*FLVLSE
Trigger: CTCAGAAAGAACTAGAAACAATGCGTAAGAGGGGTT...TGCAGTGTTGACGTTTCCCAGATGTGTGCTTGTGATGATACACACACATGCACA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000335272.10
ENST00000455418.7
CDS-3UTR CAA 90 bp ATGTGGGTTTTGTTGCTGAGGATAACAGGGTATTGCAATGCAGTAGTGATCCTAGTAAACAGTTTGACATaGTCTCTGACCCTACAGGGG +
Preference number: 5 (lower is better)
Translates to: MWVLLLRITGYCNAVVILVNSLT*SLTLQG
Trigger: CCCCTGTAGGGTCAGAGACAATGTCAAACTGTTTAC...TAGGATCACTACTGCATTGCAATACCCTGTTATCCTCAGCAACAAAACCCACAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000335272.10
ENST00000455418.7
CDS-3UTR CAA 90 bp GTGGGTTTTGTTGCTGAGGATAACAGGGTATTGCAATGCAGTAGTGATCCTACATATATACACACGTGGTaGAGAACCTGTGCATGTGTG +
Preference number: 5 (lower is better)
Translates to: VGFVAEDNRVLQCSSDPTYIHTW*RTCACV
Trigger: CACACATGCACAGGTTCTCAACCACGTGTGTATATA...TGTAGGATCACTACTGCATTGCAATACCCTGTTATCCTCAGCAACAAAACCCAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000320996.14
ENST00000335272.10
ENST00000455418.7
CDS-3UTR CAA 90 bp GCAGCCGTTTCTGACCAGCACTCTCATGATGCCTATTCAGAATCTGTCCTGATGCCAGCTAGTATTACATaGCAGTCAATTTGTCCATTA +
Preference number: 5 (lower is better)
Translates to: AAVSDQHSHDAYSESVLMPASIT*QSICPL
Trigger: TAATGGACAAATTGACTGCAATGTAATACTAGCTGG...CATCAGGACAGATTCTGAATAGGCATCATGAGAGTGCTGGTCAGAAACGGCTGC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000320996.14
ENST00000335272.10
ENST00000455418.7
CDS-3UTR CAA 90 bp ATTCAAGCTTCCAGGACTGACAGAGGAAAAACTGGATTCAGACAGAGAAAGCTGGAGGATAACAGGGTATaGCAATGCAGTAGTGATCCT +
Preference number: 5 (lower is better)
Translates to: IQASRTDRGKTGFRQRKLEDNRV*QCSSDP
Trigger: AGGATCACTACTGCATTGCAATACCCTGTTATCCTC...CAGCTTTCTCTGTCTGAATCCAGTTTTTCCTCTGTCAGTCCTGGAAGCTTGAAT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000320996.14
ENST00000335272.10
ENST00000455418.7
CDS-3UTR CAA 90 bp GTGCATGTGTGTGTATCATCACAAGCACACATCTGGGAAACGTCAACACTGCAAGAAATGTGGGTTTTGTaGCTGAGGATAACAGGGTAT +
Preference number: 5 (lower is better)
Translates to: VHVCVSSQAHIWETSTLQEMWVL*LRITGY
Trigger: ATACCCTGTTATCCTCAGCAACAAAACCCACATTTC...TTGCAGTGTTGACGTTTCCCAGATGTGTGCTTGTGATGATACACACACATGCAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000320996.14
ENST00000335272.10
ENST00000455418.7
CDS-3UTR CAA 90 bp CTGCGCTTGTTCCCCTCACTTGACCTTGATTACGTAAACAGTTTGACATTGTCTGTTCCCAAGTCTGGTTaGTGCCATGTTTCGATTTTA +
Preference number: 5 (lower is better)
Translates to: LRLFPSLDLDYVNSLTLSVPKSG*CHVSIL
Trigger: TAAAATCGAAACATGGCACAAACCAGACTTGGGAAC...AGACAATGTCAAACTGTTTACGTAATCAAGGTCAAGTGAGGGGAACAAGCGCAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000335272.10
ENST00000455418.7
ENST00000634017.1
CDS-3UTR CAA 90 bp TCACTTGACCTTGATTACGTAAACAGTTTGACATTGTCTCTGACCCTACAGGGGGTCTGCTGGTTCAACTaGACTTCTATCTGCAATATC +
Preference number: 5 (lower is better)
Translates to: SLDLDYVNSLTLSLTLQGVCWFN*TSICNI
Trigger: GATATTGCAGATAGAAGTCAAGTTGAACCAGCAGAC...CCCCTGTAGGGTCAGAGACAATGTCAAACTGTTTACGTAATCAAGGTCAAGTGA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000335272.10
ENST00000455418.7
ENST00000634017.1
CDS-3UTR CAA 90 bp TTTAGGAGGGACAGGAGGTTACAAAAGACAGTTTGTGACCTGAAGGCTTCAACAAACCCCTCTTACGCATaGTTTCTAGTTCTTTCTGAG +
Preference number: 5 (lower is better)
Translates to: FRRDRRLQKTVCDLKASTNPSYA*FLVLSE
Trigger: CTCAGAAAGAACTAGAAACAATGCGTAAGAGGGGTT...TGTTGAAGCCTTCAGGTCACAAACTGTCTTTTGTAACCTCCTGTCCCTCCTAAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000335272.10
ENST00000455418.7
CDS-3UTR CAA 90 bp GTCACTATCTCCTCCTTGAAGTGTGTGTTCCCACAAGAAGAGCAAAATGTCATCGAAATGTGGGTTTTGTaGCTGAGGATAACAGGGTAT +
Preference number: 5 (lower is better)
Translates to: VTISSLKCVFPQEEQNVIEMWVL*LRITGY
Trigger: ATACCCTGTTATCCTCAGCAACAAAACCCACATTTC...GATGACATTTTGCTCTTCTTGTGGGAACACACACTTCAAGGAGGAGATAGTGAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000320996.14
ENST00000335272.10
ENST00000455418.7
CDS-3UTR CAA 90 bp CTGCGCTTGTTCCCCTCACTTGACCTTGATTACGTAAACAGTTTGACATTGTCTTATGAAATGTGGGTTTaGTTGCTGAGGATAACAGGG +
Preference number: 5 (lower is better)
Translates to: LRLFPSLDLDYVNSLTLSYEMWV*LLRITG
Trigger: CCCTGTTATCCTCAGCAACAAAACCCACATTTCATA...AGACAATGTCAAACTGTTTACGTAATCAAGGTCAAGTGAGGGGAACAAGCGCAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000335272.10
ENST00000455418.7
CDS-3UTR CAA 90 bp GTGGGTTTTGTTGCTGAGGATAACAGGGTATTGCAATGCAGTAGTGATCCTACAATTCATTCGTTACAATaGTTCTACAGTAGGGGTACG +
Preference number: 5 (lower is better)
Translates to: VGFVAEDNRVLQCSSDPTIHSLQ*FYSRGT
Trigger: CGTACCCCTACTGTAGAACAATTGTAACGAATGAAT...TGTAGGATCACTACTGCATTGCAATACCCTGTTATCCTCAGCAACAAAACCCAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000320996.14
ENST00000335272.10
CDS-3UTR CAA 90 bp GTTTTGTTGCTGAGGATAACAGGGTATTGCAATGCAGTAGTGATCCTACACATCGTTCCCAAGTCTGGTTaGTGCCATGTTTCGATTTTA +
Preference number: 5 (lower is better)
Translates to: VLLLRITGYCNAVVILHIVPKSG*CHVSIL
Trigger: TAAAATCGAAACATGGCACAAACCAGACTTGGGAAC...GATGTGTAGGATCACTACTGCATTGCAATACCCTGTTATCCTCAGCAACAAAAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000320996.14
ENST00000335272.10
ENST00000455418.7
CDS-3UTR CAA 90 bp CACAAAATTAGCAATAATCTTCCTCGCACCAAACACTTTGCAGACAATGATTATCCCAAAGGGCCTCTCTaGGTCTTGACTGACTGGAAT +
Preference number: 5 (lower is better)
Translates to: HKISNNLPRTKHFADNDYPKGPL*VLTDWN
Trigger: ATTCCAGTCAGTCAAGACCAAGAGAGGCCCTTTGGG...ATAATCATTGTCTGCAAAGTGTTTGGTGCGAGGAAGATTATTGCTAATTTTGTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000320996.14
ENST00000335272.10
ENST00000455418.7
CDS-3UTR CAA 90 bp TTTCACAAAATTAGCAATAATCTTCCTCGCACCAAACACTTTGCAGACAATGATCCCAAAGGGCCTCTCTaGGTCTTGACTGACTGGAAT +
Preference number: 5 (lower is better)
Translates to: FHKISNNLPRTKHFADNDPKGPL*VLTDWN
Trigger: ATTCCAGTCAGTCAAGACCAAGAGAGGCCCTTTGGG...ATCATTGTCTGCAAAGTGTTTGGTGCGAGGAAGATTATTGCTAATTTTGTGAAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000320996.14
ENST00000335272.10
ENST00000455418.7
CDS-3UTR CAA 90 bp CACAAAATTAGCAATAATCTTCCTCGCACCAAACACTTTGCAGACAATGATTATTGCAGTCCCCACCACTaGAATTTGATGGTCACCAGC +
Preference number: 5 (lower is better)
Translates to: HKISNNLPRTKHFADNDYCSPHH*NLMVTS
Trigger: GCTGGTGACCATCAAATTCAAGTGGTGGGGACTGCA...ATAATCATTGTCTGCAAAGTGTTTGGTGCGAGGAAGATTATTGCTAATTTTGTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000320996.14
ENST00000335272.10
ENST00000455418.7
CDS-3UTR CAA 90 bp CTTGACCTTGATTACGTAAACAGTTTGACATTGTCTCTGACCCTACAGGGGACTGATTACGTAAACAGTTaGACATTGTCTCTGACCCTA +
Preference number: 5 (lower is better)
Translates to: LDLDYVNSLTLSLTLQGTDYVNS*TLSLTL
Trigger: TAGGGTCAGAGACAATGTCAAACTGTTTACGTAATC...AGTCCCCTGTAGGGTCAGAGACAATGTCAAACTGTTTACGTAATCAAGGTCAAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000335272.10
ENST00000455418.7
ENST00000634017.1
CDS-3UTR CAA 90 bp TGTGCATGTGTGTGTATCATCACAAGCACACATCTGGGAAACGTCAACACTGCAAACTGGCCTGTAACTTaGCTCCTTACTTTATATTGT +
Preference number: 5 (lower is better)
Translates to: CACVCIITSTHLGNVNTANWPVT*LLTLYC
Trigger: ACAATATAAAGTAAGGAGCAAAGTTACAGGCCAGTT...TGCAGTGTTGACGTTTCCCAGATGTGTGCTTGTGATGATACACACACATGCACA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000320996.14
ENST00000335272.10
ENST00000455418.7
CDS-3UTR CAA 90 bp TTTCACAAAATTAGCAATAATCTTCCTCGCACCAAACACTTTGCAGACAATGATCTGATGACGTCCTACTaGAGAGCACATCCCACAGTC +
Preference number: 5 (lower is better)
Translates to: FHKISNNLPRTKHFADNDLMTSY*RAHPTV
Trigger: GACTGTGGGATGTGCTCTCAAGTAGGACGTCATCAG...ATCATTGTCTGCAAAGTGTTTGGTGCGAGGAAGATTATTGCTAATTTTGTGAAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000320996.14
ENST00000335272.10
ENST00000455418.7
CDS-3UTR CAA 90 bp AACAGGGTATTGCAATGCAGTAGTGATCCTACACATCCTTCCTTGTCTGATTCACCTACACATCCTTCCTaGTCTGATTCACTGAAATCA +
Preference number: 5 (lower is better)
Translates to: NRVLQCSSDPTHPSLSDSPTHPS*SDSLKS
Trigger: TGATTTCAGTGAATCAGACAAGGAAGGATGTGTAGG...TGAATCAGACAAGGAAGGATGTGTAGGATCACTACTGCATTGCAATACCCTGTT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000320996.14
ENST00000335272.10
ENST00000455418.7
CDS-3UTR CAA 90 bp GTTTTGTTGCTGAGGATAACAGGGTATTGCAATGCAGTAGTGATCCTACACATCTATGAAATGTGGGTTTaGTTGCTGAGGATAACAGGG +
Preference number: 5 (lower is better)
Translates to: VLLLRITGYCNAVVILHIYEMWV*LLRITG
Trigger: CCCTGTTATCCTCAGCAACAAAACCCACATTTCATA...GATGTGTAGGATCACTACTGCATTGCAATACCCTGTTATCCTCAGCAACAAAAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000320996.14
ENST00000335272.10
ENST00000455418.7
CDS-3UTR CAA 90 bp GGTTTTGTTGCTGAGGATAACAGGGTATTGCAATGCAGTAGTGATCCTACACATTATGAAATGTGGGTTTaGTTGCTGAGGATAACAGGG +
Preference number: 5 (lower is better)
Translates to: GFVAEDNRVLQCSSDPTHYEMWV*LLRITG
Trigger: CCCTGTTATCCTCAGCAACAAAACCCACATTTCATA...ATGTGTAGGATCACTACTGCATTGCAATACCCTGTTATCCTCAGCAACAAAACC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000320996.14
ENST00000335272.10
ENST00000455418.7
CDS-3UTR CAA 90 bp ATGTGGGTTTTGTTGCTGAGGATAACAGGGTATTGCAATGCAGTAGTGATCCTAATTCATTCGTTACAATaGTTCTACAGTAGGGGTACG +
Preference number: 5 (lower is better)
Translates to: MWVLLLRITGYCNAVVILIHSLQ*FYSRGT
Trigger: CGTACCCCTACTGTAGAACAATTGTAACGAATGAAT...TAGGATCACTACTGCATTGCAATACCCTGTTATCCTCAGCAACAAAACCCACAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000320996.14
ENST00000335272.10
CDS-3UTR CAA 90 bp GGTTTTGTTGCTGAGGATAACAGGGTATTGCAATGCAGTAGTGATCCTACACATAGGAATCTAGACCATTaGCATAGTTTCCAAGCTGTA +
Preference number: 5 (lower is better)
Translates to: GFVAEDNRVLQCSSDPTHRNLDH*HSFQAV
Trigger: TACAGCTTGGAAACTATGCAAATGGTCTAGATTCCT...ATGTGTAGGATCACTACTGCATTGCAATACCCTGTTATCCTCAGCAACAAAACC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000320996.14
ENST00000335272.10
ENST00000455418.7
CDS-3UTR CAA 90 bp ATTCTATTCAAGCTTCCAGGACTGACAGAGGAAAAACTGGATTCAGACAGAGAACCTACACATCCTTCCTaGTCTGATTCACTGAAATCA +
Preference number: 5 (lower is better)
Translates to: ILFKLPGLTEEKLDSDREPTHPS*SDSLKS
Trigger: TGATTTCAGTGAATCAGACAAGGAAGGATGTGTAGG...TTCTCTGTCTGAATCCAGTTTTTCCTCTGTCAGTCCTGGAAGCTTGAATAGAAT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000320996.14
ENST00000335272.10
ENST00000455418.7
CDS-3UTR CAA 90 bp ACTAGGTATTTTACATTCACCACACATTCCCTCAAATCTCCACAGTTGTTAGAATATATACACACGTGGTaGAGAACCTGTGCATGTGTG +
Preference number: 5 (lower is better)
Translates to: TRYFTFTTHSLKSPQLLEYIHTW*RTCACV
Trigger: CACACATGCACAGGTTCTCAACCACGTGTGTATATA...TTCTAACAACTGTGGAGATTTGAGGGAATGTGTGGTGAATGTAAAATACCTAGT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000320996.14
ENST00000335272.10
ENST00000455418.7
CDS-3UTR CAA 90 bp CAAGTGTGTGTATCTGGATCTGTAGCTCTACATGCGCTTTATATACAGCTACAGCCAGCTAGTATTACATaGCAGTCAATTTGTCCATTA +
Preference number: 5 (lower is better)
Translates to: QVCVSGSVALHALYIQLQPASIT*QSICPL
Trigger: TAATGGACAAATTGACTGCAATGTAATACTAGCTGG...CTGTAGCTGTATATAAAGCGCATGTAGAGCTACAGATCCAGATACACACACTTG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000320996.14
ENST00000335272.10
ENST00000455418.7
CDS-3UTR CAA 90 bp CACAAAATTAGCAATAATCTTCCTCGCACCAAACACTTTGCAGACAATGATTATGTCACTATCTCCTCCTaGAAGTGTGTGTTCCCACAA +
Preference number: 5 (lower is better)
Translates to: HKISNNLPRTKHFADNDYVTISS*KCVFPQ
Trigger: TTGTGGGAACACACACTTCAAGGAGGAGATAGTGAC...ATAATCATTGTCTGCAAAGTGTTTGGTGCGAGGAAGATTATTGCTAATTTTGTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000320996.14
ENST00000335272.10
ENST00000455418.7
CDS-3UTR CAA 90 bp CACAAAATTAGCAATAATCTTCCTCGCACCAAACACTTTGCAGACAATGATTATGTCTGCTGGTTCAACTaGACTTCTATCTGCAATATC +
Preference number: 5 (lower is better)
Translates to: HKISNNLPRTKHFADNDYVCWFN*TSICNI
Trigger: GATATTGCAGATAGAAGTCAAGTTGAACCAGCAGAC...ATAATCATTGTCTGCAAAGTGTTTGGTGCGAGGAAGATTATTGCTAATTTTGTG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000320996.14
ENST00000335272.10
ENST00000455418.7
CDS TCA 90 bp TCTTGGTATCTATCCAACTGCTTGAAAGAGTATGGCAATCAAAGGTaGCCAGGTTCTAAGTCTGATGAACTAGTTTATTTCAATCCTAAA +
Preference number: 5 (lower is better)
Translates to: SWYLSNCLKEYGNQR*PGSKSDELVYFNPK
Trigger: TTTAGGATTGAAATAAACTAGTTCATCAGACTTAGAACCTGGTCACCTTTGATTGCCATACTCTTTCAAGCAGTTGGATAGATACCAAGA
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000477861.1
CDS-3UTR CAA 90 bp CTGAAGATAGGTACAGTACTTTGGAGAAATTGTACTAATCCCTTCAGTATGTCTCCAGCTAGTATTACATaGCAGTCAATTTGTCCATTA +
Preference number: 5 (lower is better)
Translates to: LKIGTVLWRNCTNPFSMSPASIT*QSICPL
Trigger: TAATGGACAAATTGACTGCAATGTAATACTAGCTGG...AGACATACTGAAGGGATTAGTACAATTTCTCCAAAGTACTGTACCTATCTTCAG
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000320996.14
ENST00000335272.10
ENST00000455418.7
CDS-3UTR CAA 90 bp TTTCACAAAATTAGCAATAATCTTCCTCGCACCAAACACTTTGCAGACAATGATAACTGGCCTGTAACTTaGCTCCTTACTTTATATTGT +
Preference number: 5 (lower is better)
Translates to: FHKISNNLPRTKHFADNDNWPVT*LLTLYC
Trigger: ACAATATAAAGTAAGGAGCAAAGTTACAGGCCAGTT...ATCATTGTCTGCAAAGTGTTTGGTGCGAGGAAGATTATTGCTAATTTTGTGAAA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000320996.14
ENST00000335272.10
ENST00000455418.7
CDS CCA 72 bp CAGGATGAGCGGCCAGCACTCCCGACGGAGGCCCTCTaGGAGAAAAGAGGCCCTTGGCCTCGAGACCCAGGA +
Preference number: 6 (lower is better)
Translates to: QDERPALPTEAL*EKRGPWPRDPG
Trigger: TCCTGGGTCTCGAGGCCAAGGGCCTCTTTTCTCCCAGAGGGCCTCCGTCGGGAGTGCTGGCCGCTCATCCTG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000415296.5
CDS CAA 90 bp GCGGCCAGCACTCCCGACGGAGGCCCTCTGGGAGAAAAGAGGCCCTaGGCCTCGAGACCCAGGAAAGCGGGCTGTTCAGGAGTTGGTTCG +
Preference number: 6 (lower is better)
Translates to: AASTPDGGPLGEKRP*ASRPRKAGCSGVGS
Trigger: CGAACCAACTCCTGAACAGCCCGCTTTCCTGGGTCTCGAGGCCAAGGGCCTCTTTTCTCCCAGAGGGCCTCCGTCGGGAGTGCTGGCCGC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000415296.5
CDS CCA 72 bp CAGGAGTTGGTTCGCGCAGTTACACCGAAAGCGCCGTaGGCCTCAAAGCCGCAGCCCGGAGGTCGCTGGCTT +
Preference number: 6 (lower is better)
Translates to: QELVRAVTPKAP*ASKPQPGGRWL
Trigger: AAGCCAGCGACCTCCGGGCTGCGGCTTTGAGGCCCACGGCGCTTTCGGTGTAACTGCGCGAACCAACTCCTG
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000415296.5
CDS CAA 72 bp CGTGGGCCTCAAAGCCGCAGCCCGGAGGTCGCTGGCTaGCTCTGTGTCAGACACGGTTCTAGGCAGTGGGGA +
Preference number: 6 (lower is better)
Translates to: RGPQSRSPEVAG*LCVRHGSRQWG
Trigger: TCCCCACTGCCTAGAACCGTGTCTGACACAGAGCAAGCCAGCGACCTCCGGGCTGCGGCTTTGAGGCCCACG
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000415296.5
CDS GCA 72 bp GTGGGCCTCAAAGCCGCAGCCCGGAGGTCGCTGGCTTaGTCTGTGTCAGACACGGTTCTAGGCAGTGGGGAT +
Preference number: 6 (lower is better)
Translates to: VGLKAAARRSLA*SVSDTVLGSGD
Trigger: ATCCCCACTGCCTAGAACCGTGTCTGACACAGAGCAAGCCAGCGACCTCCGGGCTGCGGCTTTGAGGCCCAC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000415296.5
CDS CCA 72 bp GGCCTCGAGACCCAGGAAAGCGGGCTGTTCAGGAGTTaGTTCGCGCAGTTACACCGAAAGCGCCGTGGGCCT +
Preference number: 6 (lower is better)
Translates to: GLETQESGLFRS*FAQLHRKRRGP
Trigger: AGGCCCACGGCGCTTTCGGTGTAACTGCGCGAACCAACTCCTGAACAGCCCGCTTTCCTGGGTCTCGAGGCC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000415296.5
CDS CAA 72 bp TGGCCTCGAGACCCAGGAAAGCGGGCTGTTCAGGAGTaGGTTCGCGCAGTTACACCGAAAGCGCCGTGGGCC +
Preference number: 6 (lower is better)
Translates to: WPRDPGKRAVQE*VRAVTPKAPWA
Trigger: GGCCCACGGCGCTTTCGGTGTAACTGCGCGAACCAACTCCTGAACAGCCCGCTTTCCTGGGTCTCGAGGCCA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000415296.5
CDS CAA 90 bp AGAGGCCCTTGGCCTCGAGACCCAGGAAAGCGGGCTGTTCAGGAGTaGGTTCGCGCAGTTACACCGAAAGCGCCGTGGGCCTCAAAGCCG +
Preference number: 6 (lower is better)
Translates to: RGPWPRDPGKRAVQE*VRAVTPKAPWASKP
Trigger: CGGCTTTGAGGCCCACGGCGCTTTCGGTGTAACTGCGCGAACCAACTCCTGAACAGCCCGCTTTCCTGGGTCTCGAGGCCAAGGGCCTCT
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000415296.5
CDS GCA 72 bp CACACGGCACTTCTCCATCAACAAATCTCCCATCACTaGCGTCCCACGGCCTCGCTCGCGCCCACAGACCCA +
Preference number: 6 (lower is better)
Translates to: HTALLHQQISHH*RPTASLAPTDP
Trigger: TGGGTCTGTGGGCGCGAGCGAGGCCGTGGGACGGCAGTGATGGGAGATTTGTTGATGGAGAAGTGCCGTGTG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000436663.1
ENST00000634017.1
CDS CAA 90 bp AGGGCCCATGAACACTGGGAACATGTGGTAGAGTGTGGCGGCTGGTaGGTGGGACACAGGAAGGAACCATGCAGCGAGGTGCAGTTAGCA +
Preference number: 6 (lower is better)
Translates to: RAHEHWEHVVECGGW*VGHRKEPCSEVQLA
Trigger: TGCTAACTGCACCTCGCTGCATGGTTCCTTCCTGTGTCCCACCAACCAGCCGCCACACTCTACCACATGTTCCCAGTGTTCATGGGCCCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000460566.5
CDS CAA 72 bp GAACACTGGGAACATGTGGTAGAGTGTGGCGGCTGGTaGGTGGGACACAGGAAGGAACCATGCAGCGAGGTG +
Preference number: 6 (lower is better)
Translates to: EHWEHVVECGGW*VGHRKEPCSEV
Trigger: CACCTCGCTGCATGGTTCCTTCCTGTGTCCCACCAACCAGCCGCCACACTCTACCACATGTTCCCAGTGTTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000460566.5
CDS GCA 72 bp CCTACAGGGGACTCATCTAGACATCAGCAGCCGACGTaGCTCGAACGGAACCCCTCTTACGCATTGTTTCTA +
Preference number: 6 (lower is better)
Translates to: PTGDSSRHQQPT*LERNPSYALFL
Trigger: TAGAAACAATGCGTAAGAGGGGTTCCGTTCGAGGCACGTCGGCTGCTGATGTCTAGATGAGTCCCCTGTAGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000335272.10
ENST00000455418.7
ENST00000634017.1
CDS GCA 72 bp CACCAAGGAGCCCTCGGGAGCAATCATCCTCACGAATaGAGGCACTTTGCTGGGAGAAGAGAGATACTGGAT +
Preference number: 6 (lower is better)
Translates to: HQGALGSNHPHE*RHFAGRREILD
Trigger: ATCCAGTATCTCTCTTCTCCCAGCAAAGTGCCTGCATTCGTGAGGATGATTGCTCCCGAGGGCTCCTTGGTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000477861.1
CDS CCA 72 bp GATTTTGAGACAAGGGTGGAAAGGGCCCATGAACACTaGGAACATGTGGTAGAGTGTGGCGGCTGGTTGGTG +
Preference number: 6 (lower is better)
Translates to: DFETRVERAHEH*EHVVECGGWLV
Trigger: CACCAACCAGCCGCCACACTCTACCACATGTTCCCAGTGTTCATGGGCCCTTTCCACCCTTGTCTCAAAATC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000460566.5
CDS TCA 72 bp TCTTCCAGTTGGGTCCCAAAGGGCCTCTCTTGGTCTTaGCTGACTGGAATAATGCTGGGTCTTCATCAGCTT +
Preference number: 6 (lower is better)
Translates to: SSSWVPKGLSWS*LTGIMLGLHQL
Trigger: AAGCTGATGAAGACCCAGCATTATTCCAGTCAGTCAAGACCAAGAGAGGCCCTTTGGGACCCAACTGGAAGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENST00000320996.14
ENST00000335272.10
ENST00000415296.5
ENST00000455418.7
ENST00000477861.1
ENST00000634017.1
CDS CAA 90 bp AGTCCCTGTTCTCAAGAAGCTCACAGTCTAGAGGAGACAACTCACTaGGAAAGAAAGCAGGGAGAATTTGGGGTGGTGGGGAAGTGCTAT +
Preference number: 6 (lower is better)
Translates to: SPCSQEAHSLEETTH*ERKQGEFGVVGKCY
Trigger: ATAGCACTTCCCCACCACCCCAAATTCTCCCTGCTTTCTTTCCAAGTGAGTTGTCTCCTCTAGACTGTGAGCTTCTTGAGAACAGGGACT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000415296.5
CDS CAA 90 bp ACCAAGGAGCCCTCGGGAGCAATCATCCTCACGAATGCAGGCACTTaGCTGGGAGAAGAGAGATACTGGATATATTTAACAGCACCATCA +
Preference number: 6 (lower is better)
Translates to: TKEPSGAIILTNAGT*LGEERYWIYLTAPS
Trigger: TGATGGTGCTGTTAAATATATCCAGTATCTCTCTTCTCCCAGCAAAGTGCCTGCATTCGTGAGGATGATTGCTCCCGAGGGCTCCTTGGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000477861.1
CDS GCA 72 bp TCCTTCTCCACCACCAGTCTCATTCTTACTAGCTTCTaGAACAGAGTAAAGCTGCCCAACCTGATACTCCTG +
Preference number: 6 (lower is better)
Translates to: SFSTTSLILTSF*NRVKLPNLILL
Trigger: CAGGAGTATCAGGTTGGGCAGCTTTACTCTGTTGCAGAAGCTAGTAAGAATGAGACTGGTGGTGGAGAAGGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENST00000320996.14
ENST00000335272.10
ENST00000415296.5
ENST00000436663.1
ENST00000455418.7
ENST00000460566.5
ENST00000471825.1
ENST00000634017.1
CDS CCA 72 bp GTAAAGCTGCCCAACCTGATACTCCTGAACAGAACATaGCAAAACCACACGGCACTTCTCCATCAACAAATC +
Preference number: 6 (lower is better)
Translates to: VKLPNLILLNRT*QNHTALLHQQI
Trigger: GATTTGTTGATGGAGAAGTGCCGTGTGGTTTTGCCATGTTCTGTTCAGGAGTATCAGGTTGGGCAGCTTTAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000436663.1
ENST00000634017.1
CDS CAA 72 bp CTGGTCAGATTCTTCTTCACTCATCACTGGCTGCGCTaGTTCCCCTCACTTGACCTTGATTACGTAATGTTT +
Preference number: 6 (lower is better)
Translates to: LVRFFFTHHWLR*FPSLDLDYVMF
Trigger: AAACATTACGTAATCAAGGTCAAGTGAGGGGAACAAGCGCAGCCAGTGATGAGTGAAGAAGAATCTGACCAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000320996.14
CDS TCA 72 bp ACGGAACCCCTCTTACGCATTGTTTCTAGTTCTTTCTaGGTCTCGTCTTCCATTCTCCTAATGTCTTCCATC +
Preference number: 6 (lower is better)
Translates to: TEPLLRIVSSSF*VSSSILLMSSI
Trigger: GATGGAAGACATTAGGAGAATGGAAGACGAGACTCAGAAAGAACTAGAAACAATGCGTAAGAGGGGTTCCGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENST00000335272.10
ENST00000455418.7
ENST00000477861.1
ENST00000634017.1
CDS CAA 90 bp TGCAAGATACTGGTCAGATTCTTCTTCACTCATCACTGGCTGCGCTaGTTCCCCTCACTTGACCTTGATTACGTAATGTTTCTAGTTCTT +
Preference number: 6 (lower is better)
Translates to: CKILVRFFFTHHWLR*FPSLDLDYVMFLVL
Trigger: AAGAACTAGAAACATTACGTAATCAAGGTCAAGTGAGGGGAACAAGCGCAGCCAGTGATGAGTGAAGAAGAATCTGACCAGTATCTTGCA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000320996.14
CDS CCA 72 bp ATCTACACAGAAAACAAATCGCCTTCTCTCTTACTCTaGTCTCTTTGCTGCACAGACGTACTAGACTTCACT +
Preference number: 6 (lower is better)
Translates to: IYTENKSPSLLL*SLCCTDVLDFT
Trigger: AGTGAAGTCTAGTACGTCTGTGCAGCAAAGAGACCAGAGTAAGAGAGAAGGCGATTTGTTTTCTGTGTAGAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000465179.1
CDS TCA 72 bp CACCATCAATTCTTTCTTGGTATCTATCCAACTGCTTaGAAGAGTATGGCAATCAAAGGTGACCAGGTTCTA +
Preference number: 6 (lower is better)
Translates to: HHQFFLGIYPTA*KSMAIKGDQVL
Trigger: TAGAACCTGGTCACCTTTGATTGCCATACTCTTTCAAGCAGTTGGATAGATACCAAGAAAGAATTGATGGTG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000477861.1
CDS TCA 72 bp CTATCCAACTGCTTGAAAGAGTATGGCAATCAAAGGTaGCCAGGTTCTAAGTCTGATGAACTAGTTTATTTC +
Preference number: 6 (lower is better)
Translates to: LSNCLKEYGNQR*PGSKSDELVYF
Trigger: GAAATAAACTAGTTCATCAGACTTAGAACCTGGTCACCTTTGATTGCCATACTCTTTCAAGCAGTTGGATAG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000477861.1
CDS CAA 90 bp AGAAGAGAGATACTGGATATATTTAACAGCACCATCAATTCTTTCTaGGTATCTATCCAACTGCTTGAAAGAGTATGGCAATCAAAGGTG +
Preference number: 6 (lower is better)
Translates to: RREILDIFNSTINSF*VSIQLLERVWQSKV
Trigger: CACCTTTGATTGCCATACTCTTTCAAGCAGTTGGATAGATACCAAGAAAGAATTGATGGTGCTGTTAAATATATCCAGTATCTCTCTTCT
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000477861.1