Pregenerated sensors for PINCR (Homo sapiens)
Ensembl gene IDs: ENSG00000224294Ensembl transcript IDs: ENST00000440955.1
Found 11 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS TCA 90 bp | AGGTATACTTCAAGGACCAGGGTAATCCAGTCAGAATCTATACTCTaGGAATCTGGAATAGGAGCTTTCCTCATGTACCAGTATGGGTCA | + |
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Preference number: 5 (lower is better) Translates to: RYTSRTRVIQSESIL*ESGIGAFLMYQYGS Trigger: TGACCCATACTGGTACATGAGGAAAGCTCCTATTCCAGATTCTCAGAGTATAGATTCTGACTGGATTACCCTGGTCCTTGAAGTATACCT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000440955.1 |
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| CDS CAA 72 bp | GCTCAGCTTCTGTTGAGGGACTCACAAAGCTTACAATaGTGGCAAAAGGTGCAGCTGGAGCAAGCATGTCAC | + |
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Preference number: 6 (lower is better) Translates to: AQLLLRDSQSLQ*WQKVQLEQACH Trigger: GTGACATGCTTGCTCCAGCTGCACCTTTTGCCACAATTGTAAGCTTTGTGAGTCCCTCAACAGAAGCTGAGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000440955.1 |
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| CDS CCA 72 bp | ACTCACAAAGCTTACAATTGTGGCAAAAGGTGCAGCTaGAGCAAGCATGTCACATGGCAAGAGAGGGAGCAA | + |
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Preference number: 6 (lower is better) Translates to: THKAYNCGKRCS*SKHVTWQEREQ Trigger: TTGCTCCCTCTCTTGCCATGTGACATGCTTGCTCCAGCTGCACCTTTTGCCACAATTGTAAGCTTTGTGAGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000440955.1 |
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| CDS CCA 72 bp | CAGCTTCTGTTGAGGGACTCACAAAGCTTACAATTGTaGCAAAAGGTGCAGCTGGAGCAAGCATGTCACATG | + |
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Preference number: 6 (lower is better) Translates to: QLLLRDSQSLQL*QKVQLEQACHM Trigger: CATGTGACATGCTTGCTCCAGCTGCACCTTTTGCCACAATTGTAAGCTTTGTGAGTCCCTCAACAGAAGCTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000440955.1 |
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| CDS TCA 72 bp | CAAGTACAGCAGAAGAAAGAAAATACGGTCAGTCACTaGGGGGTTTCACATATCCAGGAGCAGCTCACAGAG | + |
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Preference number: 6 (lower is better) Translates to: QVQQKKENTVSH*GVSHIQEQLTE Trigger: CTCTGTGAGCTGCTCCTGGATATGTGAAACCCCTCAGTGACTGACCGTATTTTCTTTCTTCTGCTGTACTTG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000440955.1 |
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| CDS TCA 72 bp | CAAGAAGCATGGTGCCAGCATTTGCTCAGCTTCTGTTaGGGGACTCACAAAGCTTACAATTGTGGCAAAAGG | + |
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Preference number: 6 (lower is better) Translates to: QEAWCQHLLSFC*GTHKAYNCGKR Trigger: CCTTTTGCCACAATTGTAAGCTTTGTGAGTCCCTCAACAGAAGCTGAGCAAATGCTGGCACCATGCTTCTTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000440955.1 |
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| CDS CCA 72 bp | AGACAGCAGGTTATACATGGGCATCCTCACTTATCTTaGTCTGTAAGGTACGTGATCAAAGGGTTCTTGCAC | + |
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Preference number: 6 (lower is better) Translates to: RQQVIHGHPHLS*SVRYVIKGFLH Trigger: GTGCAAGAACCCTTTGATCACGTACCTTACAGACCAAGATAAGTGAGGATGCCCATGTATAACCTGCTGTCT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000440955.1 |
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| CDS TCA 72 bp | GGAGCTTTCCTCATGTACCAGTATGGGTCACCAAAATaGTCCAGGATCTTTCGCTCCTTAGTTCAGCTAAAA | + |
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Preference number: 6 (lower is better) Translates to: GAFLMYQYGSPK*SRIFRSLVQLK Trigger: TTTTAGCTGAACTAAGGAGCGAAAGATCCTGGATCATTTTGGTGACCCATACTGGTACATGAGGAAAGCTCC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000440955.1 |
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| CDS TCA 72 bp | TCAAGGACCAGGGTAATCCAGTCAGAATCTATACTCTaGGAATCTGGAATAGGAGCTTTCCTCATGTACCAG | + |
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Preference number: 6 (lower is better) Translates to: SRTRVIQSESIL*ESGIGAFLMYQ Trigger: CTGGTACATGAGGAAAGCTCCTATTCCAGATTCTCAGAGTATAGATTCTGACTGGATTACCCTGGTCCTTGA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000440955.1 |
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| CDS CCA 72 bp | CAGGGTAATCCAGTCAGAATCTATACTCTGAGAATCTaGAATAGGAGCTTTCCTCATGTACCAGTATGGGTC | + |
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Preference number: 6 (lower is better) Translates to: QGNPVRIYTLRI*NRSFPHVPVWV Trigger: GACCCATACTGGTACATGAGGAAAGCTCCTATTCCAGATTCTCAGAGTATAGATTCTGACTGGATTACCCTG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000440955.1 |
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| CDS GCA 72 bp | GGCAATATCAATGTATTGAGGATACATCCTCCATATTaGAGTGTTGCAATGATGGAAATGTGCTTTAAATCT | + |
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Preference number: 6 (lower is better) Translates to: GNINVLRIHPPY*SVAMMEMCFKS Trigger: AGATTTAAAGCACATTTCCATCATTGCAACACTGCAATATGGAGGATGTATCCTCAATACATTGATATTGCC 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000440955.1 |
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