Pregenerated sensors for PIMREG (Homo sapiens)
Ensembl gene IDs: ENSG00000129195Ensembl transcript IDs: ENST00000571373.5, ENST00000571572.2, ENST00000572447.6, ENST00000572595.6, ENST00000573385.1
Found 48 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | CAGGGCCCAGCCTTAGAGCCCATCATGGCCATTATACAAGTGGAATaGGGAAACAGCCCCAAGTTAGGGGAGGTCCACAACCGAGGCCCT | + |
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Preference number: 1 (lower is better) Translates to: QGPALEPIMAIIQVE*GNSPKLGEVHNRGP Trigger: AGGGCCTCGGTTGTGGACCTCCCCTAACTTGGGGCTGTTTCCCCATTCCACTTGTATAATGGCCATGATGGGCTCTAAGGCTGGGCCCTG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000571373.5 |
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| 3UTR GCA 90 bp | CCTACTCTGCTGTGCCCATCAGCTCTGTGGGCTTTTTCTTTAACTTaGTCATGCATGAGATGGAGGAGAAGGACAGTGAGAAAGACTCTT | + |
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Preference number: 1 (lower is better) Translates to: PTLLCPSALWAFSLT*SCMRWRRRTVRKTL Trigger: AAGAGTCTTTCTCACTGTCCTTCTCCTCCATCTCATGCATGAGCAAGTTAAAGAAAAAGCCCACAGAGCTGATGGGCACAGCAGAGTAGG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000571572.2 |
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| 3UTR-3UTR GCA 90 bp | TGTGGTAGGAATATGGCCCCTCAACACATAGAGCTGGCAGGGCCCAGCCTTAGACCACAACCGAGGCCCTaGCCCCAGGATGGGGCCATG | + |
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Preference number: 2 (lower is better) Translates to: CGRNMAPQHIELAGPSLRPQPRP*PQDGAM Trigger: CATGGCCCCATCCTGGGGGCAGGGCCTCGGTTGTGG...TCTAAGGCTGGGCCCTGCCAGCTCTATGTGTTGAGGGGCCATATTCCTACCACA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENST00000571373.5 |
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| 3UTR-3UTR CCA 90 bp | TGCTGGAAGGTGGCTGTAGCTACTTGGGGCCCCCAGCGTGCTGTTAATGACGGGAGTGAGAAAGACTCTTaGGAGGTGGGCATTACCTGC | + |
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Preference number: 2 (lower is better) Translates to: CWKVAVATWGPQRAVNDGSEKDS*EVGITC Trigger: GCAGGTAATGCCCACCTCCCAAGAGTCTTTCTCACT...CCCGTCATTAACAGCACGCTGGGGGCCCCAAGTAGCTACAGCCACCTTCCAGCA 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000571572.2 |
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| 3UTR-3UTR GCA 90 bp | GCCCCCAGCGTGCTGTTAATGACGGGGTCAGTGAGGTTAGCAGCTCTGGCTTCAAGGTACTACCTACTCTaGTGTGCCCATCAGCTCTGT | + |
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Preference number: 2 (lower is better) Translates to: APSVLLMTGSVRLAALASRYYLL*CAHQLC Trigger: ACAGAGCTGATGGGCACAGCAGAGTAGGTAGTACCT...TGAAGCCAGAGCTGCTAACCTCACTGACCCCGTCATTAACAGCACGCTGGGGGC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000571572.2 |
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| 3UTR-3UTR CCA 90 bp | GAGGTTAGCAGCTCTGGCTTCAAGCGGCAAGTAGGTACTACCTACTCTGCTGTGAAGACTCTTGGGAGGTaGGCATTACCTGCAGGCACT | + |
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Preference number: 2 (lower is better) Translates to: EVSSSGFKRQVGTTYSAVKTLGR*ALPAGT Trigger: AGTGCCTGCAGGTAATGCCCACCTCCCAAGAGTCTT...CACAGCAGAGTAGGTAGTACCTACTTGCCGCTTGAAGCCAGAGCTGCTAACCTC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000571572.2 |
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| 3UTR-3UTR GCA 90 bp | GCCCCCAGCGTGCTGTTAATGACGGGGTCAGTGAGGTTAGCAGCTCTGGCTTCATCTTTAACTTGCTCATaGATGAGATGGAGGAGAAGG | + |
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Preference number: 2 (lower is better) Translates to: APSVLLMTGSVRLAALASSLTCS*MRWRRR Trigger: CCTTCTCCTCCATCTCATGCATGAGCAAGTTAAAGA...TGAAGCCAGAGCTGCTAACCTCACTGACCCCGTCATTAACAGCACGCTGGGGGC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000571572.2 |
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| 3UTR-3UTR CCA 90 bp | TGTGGTAGGAATATGGCCCCTCAACACATAGAGCTGGCAGGGCCCAGCCTTAGATGGCCATTATACAAGTaGAATGGGGAAACAGCCCCA | + |
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Preference number: 2 (lower is better) Translates to: CGRNMAPQHIELAGPSLRWPLYK*NGETAP Trigger: TGGGGCTGTTTCCCCATTCCACTTGTATAATGGCCA...TCTAAGGCTGGGCCCTGCCAGCTCTATGTGTTGAGGGGCCATATTCCTACCACA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENST00000571373.5 |
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| 3UTR-3UTR CCA 90 bp | TGTGGTAGGAATATGGCCCCTCAACACATAGAGCTGGCAGGGCCCAGCCTTAGAATTATACAAGTGGAATaGGGAAACAGCCCCAAGTTA | + |
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Preference number: 2 (lower is better) Translates to: CGRNMAPQHIELAGPSLRIIQVE*GNSPKL Trigger: TAACTTGGGGCTGTTTCCCCATTCCACTTGTATAAT...TCTAAGGCTGGGCCCTGCCAGCTCTATGTGTTGAGGGGCCATATTCCTACCACA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000571373.5 |
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| 3UTR-3UTR CCA 90 bp | GCAAGTAGGTACTACCTACTCTGCTGTGCCCATCAGCTCTGTGGGCTTTTTCTTTGCTCATGCATGAGATaGAGGAGAAGGACAGTGAGA | + |
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Preference number: 2 (lower is better) Translates to: ASRYYLLCCAHQLCGLFLCSCMR*RRRTVR Trigger: TCTCACTGTCCTTCTCCTCCATCTCATGCATGAGCA...AAGAAAAAGCCCACAGAGCTGATGGGCACAGCAGAGTAGGTAGTACCTACTTGC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000571572.2 |
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| 3UTR-3UTR CCA 90 bp | GTGGTGAAAAAGGTTTATTATATTCCTTATGGCTGCCTTGTACAAAATCCGTTAGGATTGGGGGCAGACTaGCTCGGAGCAGAGGTGGAT | + |
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Preference number: 2 (lower is better) Translates to: VVKKVYYIPYGCLVQNPLGLGAD*LGAEVD Trigger: ATCCACCTCTGCTCCGAGCCAGTCTGCCCCCAATCC...TAACGGATTTTGTACAAGGCAGCCATAAGGAATATAATAAACCTTTTTCACCAC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENST00000572447.6 |
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| 3UTR-3UTR TCA 90 bp | GTGGTGAAAAAGGTTTATTATATTCCTTATGGCTGCCTTGTACAAAATCCGTTACAATGTGTTTTGGTCTaGACTAAGTTGAGAAACCTT | + |
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Preference number: 2 (lower is better) Translates to: VVKKVYYIPYGCLVQNPLQCVLV*TKLRNL Trigger: AAGGTTTCTCAACTTAGTTCAGACCAAAACACATTG...TAACGGATTTTGTACAAGGCAGCCATAAGGAATATAATAAACCTTTTTCACCAC 36% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENST00000572447.6 |
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| 3UTR CCA 72 bp | GCCTTAGAGCCCATCATGGCCATTATACAAGTGGAATaGGGAAACAGCCCCAAGTTAGGGGAGGTCCACAAC | + |
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Preference number: 3 (lower is better) Translates to: ALEPIMAIIQVE*GNSPKLGEVHN Trigger: GTTGTGGACCTCCCCTAACTTGGGGCTGTTTCCCCATTCCACTTGTATAATGGCCATGATGGGCTCTAAGGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000571373.5 |
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| 3UTR-3UTR CAA 90 bp | GGCTTCAAGCGGCAAGTAGGTACTACCTACTCTGCTGTGCCCATCAGCTCTGTGGGCTTTTTCTTTAACTaGCTCATGCATGAGATGGAG | + |
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Preference number: 3 (lower is better) Translates to: GFKRQVGTTYSAVPISSVGFFFN*LMHEME Trigger: CTCCATCTCATGCATGAGCAAGTTAAAGAAAAAGCC...CACAGAGCTGATGGGCACAGCAGAGTAGGTAGTACCTACTTGCCGCTTGAAGCC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000571572.2 |
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| 3UTR-3UTR CAA 90 bp | GTGGTGAAAAAGGTTTATTATATTCCTTATGGCTGCCTTGTACAAAATCCGTTAGGAGGGCGGGGGAGGTaGGAGGTTGCCGGTGAAAGG | + |
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Preference number: 3 (lower is better) Translates to: VVKKVYYIPYGCLVQNPLGGRGR*EVAGER Trigger: CCTTTCACCGGCAACCTCCAACCTCCCCCGCCCTCC...TAACGGATTTTGTACAAGGCAGCCATAAGGAATATAATAAACCTTTTTCACCAC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENST00000572447.6 |
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| 3UTR-3UTR CAA 90 bp | GTGGTGAAAAAGGTTTATTATATTCCTTATGGCTGCCTTGTACAAAATCCGTTAGGGGGAGGTTGGAGGTaGCCGGTGAAAGGGAACAGA | + |
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Preference number: 3 (lower is better) Translates to: VVKKVYYIPYGCLVQNPLGGGWR*PVKGNR Trigger: TCTGTTCCCTTTCACCGGCAACCTCCAACCTCCCCC...TAACGGATTTTGTACAAGGCAGCCATAAGGAATATAATAAACCTTTTTCACCAC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENST00000572447.6 |
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| CDS-3UTR CCA 90 bp | TGCTGGAAGGTGGCTGTAGCTACTTGGGGCCCCCAGCGTGCTGTTAATGACGGGGTGGCTGTAGCTACTTaGGGCCCCCAGCGTGCTGTT | + |
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Preference number: 4 (lower is better) Translates to: CWKVAVATWGPQRAVNDGVAVAT*GPQRAV Trigger: AACAGCACGCTGGGGGCCCCAAGTAGCTACAGCCAC...CCCGTCATTAACAGCACGCTGGGGGCCCCAAGTAGCTACAGCCACCTTCCAGCA 61% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt. Matches the following 1 transcripts: ENST00000571572.2 |
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| CDS-3UTR GCA 90 bp | TGCTGGAAGGTGGCTGTAGCTACTTGGGGCCCCCAGCGTGCTGTTAATGACGGGGAGTTGGGGATCCACTaGCCTTCTGTGCTCCTCTCT | + |
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Preference number: 4 (lower is better) Translates to: CWKVAVATWGPQRAVNDGELGIH*PSVLLS Trigger: AGAGAGGAGCACAGAAGGGCAGTGGATCCCCAACTC...CCCGTCATTAACAGCACGCTGGGGGCCCCAAGTAGCTACAGCCACCTTCCAGCA 59% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENST00000571572.2 |
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| CDS-3UTR CCA 90 bp | TGCTGGAAGGTGGCTGTAGCTACTTGGGGCCCCCAGCGTGCTGTTAATGACGGGAAGACTCTTGGGAGGTaGGCATTACCTGCAGGCACT | + |
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Preference number: 4 (lower is better) Translates to: CWKVAVATWGPQRAVNDGKTLGR*ALPAGT Trigger: AGTGCCTGCAGGTAATGCCCACCTCCCAAGAGTCTT...CCCGTCATTAACAGCACGCTGGGGGCCCCAAGTAGCTACAGCCACCTTCCAGCA 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000571572.2 |
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| CDS-3UTR GCA 90 bp | TGCTGGAAGGTGGCTGTAGCTACTTGGGGCCCCCAGCGTGCTGTTAATGACGGGAGGTACTACCTACTCTaGTGTGCCCATCAGCTCTGT | + |
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Preference number: 4 (lower is better) Translates to: CWKVAVATWGPQRAVNDGRYYLL*CAHQLC Trigger: ACAGAGCTGATGGGCACAGCAGAGTAGGTAGTACCT...CCCGTCATTAACAGCACGCTGGGGGCCCCAAGTAGCTACAGCCACCTTCCAGCA 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000571572.2 |
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| CDS-3UTR GCA 90 bp | TGTGGTAGGAATATGGCCCCTCAACACATAGAGCTGGCAGGGCCCAGCCTTAGAGAGTTGGGGATCCACTaGCCTTCTGTGCTCCTCTCT | + |
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Preference number: 4 (lower is better) Translates to: CGRNMAPQHIELAGPSLRELGIH*PSVLLS Trigger: AGAGAGGAGCACAGAAGGGCAGTGGATCCCCAACTC...TCTAAGGCTGGGCCCTGCCAGCTCTATGTGTTGAGGGGCCATATTCCTACCACA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000571373.5 |
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| CDS-3UTR GCA 90 bp | GGCTTCAAGCGGCAAGTAGGTACTACCTACTCTGCTGTGCCCATCAGCTCTGTGCTACCTACTCTGCTGTaGCCATCAGCTCTGTGGGCT | + |
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Preference number: 4 (lower is better) Translates to: GFKRQVGTTYSAVPISSVLPTLL*PSALWA Trigger: AGCCCACAGAGCTGATGGGCACAGCAGAGTAGGTAG...CACAGAGCTGATGGGCACAGCAGAGTAGGTAGTACCTACTTGCCGCTTGAAGCC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000571572.2 |
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| CDS-3UTR CCA 90 bp | GCCCCCAGCGTGCTGTTAATGACGGGGTCAGTGAGGTTAGCAGCTCTGGCTTCAAGTGAGAAAGACTCTTaGGAGGTGGGCATTACCTGC | + |
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Preference number: 4 (lower is better) Translates to: APSVLLMTGSVRLAALASSEKDS*EVGITC Trigger: GCAGGTAATGCCCACCTCCCAAGAGTCTTTCTCACT...TGAAGCCAGAGCTGCTAACCTCACTGACCCCGTCATTAACAGCACGCTGGGGGC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000571572.2 |
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| CDS-3UTR CCA 90 bp | ATGAGGGCCAGACCCCAAACCACAAATTACAAATCTATAGCCCAGAGTGGTGTGATCTATAGCCCAGAGTaGTGTGGGAGGGCGGGGGAG | + |
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Preference number: 4 (lower is better) Translates to: MRARPQTTNYKSIAQSGVIYSPE*CGRAGE Trigger: CTCCCCCGCCCTCCCACACCACTCTGGGCTATAGAT...CACACCACTCTGGGCTATAGATTTGTAATTTGTGGTTTGGGGTCTGGCCCTCAT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000572447.6 |
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| CDS-3UTR CCA 90 bp | GGAGGTTGGAGGTTGCCGGTGAAAGGGAACAGATGTCAAATGCAAATAGTCTTTGGATTGGGGGCAGACTaGCTCGGAGCAGAGGTGGAT | + |
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Preference number: 4 (lower is better) Translates to: GGWRLPVKGNRCQMQIVFGLGAD*LGAEVD Trigger: ATCCACCTCTGCTCCGAGCCAGTCTGCCCCCAATCC...AAAGACTATTTGCATTTGACATCTGTTCCCTTTCACCGGCAACCTCCAACCTCC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000572447.6 |
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| CDS-3UTR CCA 90 bp | AATGACGGGGTCAGTGAGGTTAGCAGCTCTGGCTTCAAGCGGCAAGTAGGTACTTGCTCATGCATGAGATaGAGGAGAAGGACAGTGAGA | + |
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Preference number: 4 (lower is better) Translates to: NDGVSEVSSSGFKRQVGTCSCMR*RRRTVR Trigger: TCTCACTGTCCTTCTCCTCCATCTCATGCATGAGCA...AGTACCTACTTGCCGCTTGAAGCCAGAGCTGCTAACCTCACTGACCCCGTCATT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000571572.2 |
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| CDS-3UTR GCA 90 bp | GGAGGTTGGAGGTTGCCGGTGAAAGGGAACAGATGTCAAATGCAAATAGTCTTTGAGTTGGGGATCCACTaGCCTTCTGTGCTCCTCTCT | + |
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Preference number: 4 (lower is better) Translates to: GGWRLPVKGNRCQMQIVFELGIH*PSVLLS Trigger: AGAGAGGAGCACAGAAGGGCAGTGGATCCCCAACTC...AAAGACTATTTGCATTTGACATCTGTTCCCTTTCACCGGCAACCTCCAACCTCC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000572447.6 |
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| CDS-3UTR GCA 90 bp | GAGGTTAGCAGCTCTGGCTTCAAGCGGCAAGTAGGTACTACCTACTCTGCTGTGCCTTCAAGACAGAGCTaGCTTTTTCACTGTGCTCAA | + |
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Preference number: 4 (lower is better) Translates to: EVSSSGFKRQVGTTYSAVPSRQS*LFHCAQ Trigger: TTGAGCACAGTGAAAAAGGCAGCTCTGTCTTGAAGG...CACAGCAGAGTAGGTAGTACCTACTTGCCGCTTGAAGCCAGAGCTGCTAACCTC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000571572.2 |
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| CDS-3UTR TCA 90 bp | ATGAGGGCCAGACCCCAAACCACAAATTACAAATCTATAGCCCAGAGTGGTGTGGTTGGAGGTTGCCGGTaGAAGGGAACAGATGTCAAA | + |
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Preference number: 4 (lower is better) Translates to: MRARPQTTNYKSIAQSGVVGGCR*KGTDVK Trigger: TTTGACATCTGTTCCCTTTCACCGGCAACCTCCAAC...CACACCACTCTGGGCTATAGATTTGTAATTTGTGGTTTGGGGTCTGGCCCTCAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000572447.6 |
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| CDS-3UTR GCA 90 bp | AATGACGGGGTCAGTGAGGTTAGCAGCTCTGGCTTCAAGCGGCAAGTAGGTACTTCTTTAACTTGCTCATaGATGAGATGGAGGAGAAGG | + |
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Preference number: 4 (lower is better) Translates to: NDGVSEVSSSGFKRQVGTSLTCS*MRWRRR Trigger: CCTTCTCCTCCATCTCATGCATGAGCAAGTTAAAGA...AGTACCTACTTGCCGCTTGAAGCCAGAGCTGCTAACCTCACTGACCCCGTCATT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000571572.2 |
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| CDS-3UTR CCA 90 bp | GTGGTGAAAAAGGTTTATTATATTCCTTATGGCTGCCTTGTACAAAATCCGTTAGAGGGCGGGGGAGGTTaGAGGTTGCCGGTGAAAGGG | + |
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Preference number: 4 (lower is better) Translates to: VVKKVYYIPYGCLVQNPLEGGGG*RLPVKG Trigger: CCCTTTCACCGGCAACCTCCAACCTCCCCCGCCCTC...TAACGGATTTTGTACAAGGCAGCCATAAGGAATATAATAAACCTTTTTCACCAC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENST00000572447.6 |
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| CDS-3UTR TCA 90 bp | GTGGTGAAAAAGGTTTATTATATTCCTTATGGCTGCCTTGTACAAAATCCGTTACGGAGCAGAGGTGGATaGGGGCCAGACCCCAAACCA | + |
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Preference number: 4 (lower is better) Translates to: VVKKVYYIPYGCLVQNPLRSRGG*GPDPKP Trigger: TGGTTTGGGGTCTGGCCCTCATCCACCTCTGCTCCG...TAACGGATTTTGTACAAGGCAGCCATAAGGAATATAATAAACCTTTTTCACCAC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENST00000572447.6 |
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| CDS-3UTR CCA 90 bp | GTGGTGAAAAAGGTTTATTATATTCCTTATGGCTGCCTTGTACAAAATCCGTTAGGCTCGGAGCAGAGGTaGATGAGGGCCAGACCCCAA | + |
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Preference number: 4 (lower is better) Translates to: VVKKVYYIPYGCLVQNPLGSEQR*MRARPQ Trigger: TTGGGGTCTGGCCCTCATCCACCTCTGCTCCGAGCC...TAACGGATTTTGTACAAGGCAGCCATAAGGAATATAATAAACCTTTTTCACCAC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENST00000572447.6 |
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| CDS-3UTR GCA 90 bp | GGGGGAGGTTGGAGGTTGCCGGTGAAAGGGAACAGATGTCAAATGCAAATAGTCTATATTCCTTATGGCTaGCTTGTACAAAATCCGTTA | + |
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Preference number: 4 (lower is better) Translates to: GGGWRLPVKGNRCQMQIVYIPYG*LVQNPL Trigger: TAACGGATTTTGTACAAGGCAGCCATAAGGAATATA...GACTATTTGCATTTGACATCTGTTCCCTTTCACCGGCAACCTCCAACCTCCCCC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000572447.6 |
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| CDS-3UTR TCA 90 bp | ATGAGGGCCAGACCCCAAACCACAAATTACAAATCTATAGCCCAGAGTGGTGTGCAATGTGTTTTGGTCTaGACTAAGTTGAGAAACCTT | + |
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Preference number: 4 (lower is better) Translates to: MRARPQTTNYKSIAQSGVQCVLV*TKLRNL Trigger: AAGGTTTCTCAACTTAGTTCAGACCAAAACACATTG...CACACCACTCTGGGCTATAGATTTGTAATTTGTGGTTTGGGGTCTGGCCCTCAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000572447.6 |
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| CDS-3UTR CAA 90 bp | GCCCCCAGCGTGCTGTTAATGACGGGGTCAGTGAGGTTAGCAGCTCTGGCTTCAGGTGGCTGTAGCTACTaGGGGCCCCCAGCGTGCTGT | + |
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Preference number: 5 (lower is better) Translates to: APSVLLMTGSVRLAALASGGCSY*GPPACC Trigger: ACAGCACGCTGGGGGCCCCAAGTAGCTACAGCCACC...TGAAGCCAGAGCTGCTAACCTCACTGACCCCGTCATTAACAGCACGCTGGGGGC 62% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt. Matches the following 1 transcripts: ENST00000571572.2 |
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| CDS CCA 90 bp | ACACAGCAGGTCAGAGCAGAACCAACGCCTGCCTACAAAGATGGCTaGAGGGGCCCTCCCGGCCCCTTCACTTTGAAGCATGGGATGCCA | + |
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Preference number: 5 (lower is better) Translates to: TQQVRAEPTPAYKDG*RGPPGPFTLKHGMP Trigger: TGGCATCCCATGCTTCAAAGTGAAGGGGCCGGGAGGGCCCCTCCAGCCATCTTTGTAGGCAGGCGTTGGTTCTGCTCTGACCTGCTGTGT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000573385.1 |
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| CDS-3UTR CAA 90 bp | GGAGGTTGGAGGTTGCCGGTGAAAGGGAACAGATGTCAAATGCAAATAGTCTTTGGAGGGCGGGGGAGGTaGGAGGTTGCCGGTGAAAGG | + |
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Preference number: 5 (lower is better) Translates to: GGWRLPVKGNRCQMQIVFGGRGR*EVAGER Trigger: CCTTTCACCGGCAACCTCCAACCTCCCCCGCCCTCC...AAAGACTATTTGCATTTGACATCTGTTCCCTTTCACCGGCAACCTCCAACCTCC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000572447.6 |
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| CDS-3UTR CAA 90 bp | GGAGGTTGGAGGTTGCCGGTGAAAGGGAACAGATGTCAAATGCAAATAGTCTTTCTCCCTGGGGTGGGATaGGGGGCAGACTGGCTCGGA | + |
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Preference number: 5 (lower is better) Translates to: GGWRLPVKGNRCQMQIVFLPGVG*GADWLG Trigger: TCCGAGCCAGTCTGCCCCCAATCCCACCCCAGGGAG...AAAGACTATTTGCATTTGACATCTGTTCCCTTTCACCGGCAACCTCCAACCTCC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000572447.6 |
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| CDS-3UTR CAA 90 bp | GGAGGTTGGAGGTTGCCGGTGAAAGGGAACAGATGTCAAATGCAAATAGTCTTTGGGGGAGGTTGGAGGTaGCCGGTGAAAGGGAACAGA | + |
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Preference number: 5 (lower is better) Translates to: GGWRLPVKGNRCQMQIVFGGGWR*PVKGNR Trigger: TCTGTTCCCTTTCACCGGCAACCTCCAACCTCCCCC...AAAGACTATTTGCATTTGACATCTGTTCCCTTTCACCGGCAACCTCCAACCTCC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000572447.6 |
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| CDS TCA 90 bp | GATTCTATCCAATATAAGGACGTCTTCCTGACAGCAGCTCTCATTTaGCAGCAAATCCCCTCTAACTGGACCTTCTCGGCAGCTCCTGAA | + |
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Preference number: 5 (lower is better) Translates to: DSIQYKDVFLTAALI*QQIPSNWTFSAAPE Trigger: TTCAGGAGCTGCCGAGAAGGTCCAGTTAGAGGGGATTTGCTGTCAAATGAGAGCTGCTGTCAGGAAGACGTCCTTATATTGGATAGAATC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000572595.6 |
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| CDS TCA 90 bp | CTTTGGCAGGACTCCTGGATTCTATCCAATATAAGGACGTCTTCCTaGCAGCAGCTCTCATTTGACAGCAAATCCCCTCTAACTGGACCT | + |
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Preference number: 5 (lower is better) Translates to: LWQDSWILSNIRTSS*QQLSFDSKSPLTGP Trigger: AGGTCCAGTTAGAGGGGATTTGCTGTCAAATGAGAGCTGCTGTCAGGAAGACGTCCTTATATTGGATAGAATCCAGGAGTCCTGCCAAAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000572595.6 |
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| CDS GCA 72 bp | CAGGGTCACACAGCAGGTCAGAGCAGAACCAACGCCTaGCTACAAAGATGGCTGGAGGGGCCCTCCCGGCCC | + |
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Preference number: 6 (lower is better) Translates to: QGHTAGQSRTNA*LQRWLEGPSRP Trigger: GGGCCGGGAGGGCCCCTCCAGCCATCTTTGTAGGCAGGCGTTGGTTCTGCTCTGACCTGCTGTGTGACCCTG 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000573385.1 |
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| CDS TCA 72 bp | AAGATGGCTGGAGGGGCCCTCCCGGCCCCTTCACTTTaGAGCATGGGATGCCAACTCACCTCTCTTCCGCCA | + |
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Preference number: 6 (lower is better) Translates to: KMAGGALPAPSL*SMGCQLTSLPP Trigger: TGGCGGAAGAGAGGTGAGTTGGCATCCCATGCTTCAAAGTGAAGGGGCCGGGAGGGCCCCTCCAGCCATCTT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000573385.1 |
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| CDS CCA 72 bp | CTGGAGGGGCCCTCCCGGCCCCTTCACTTTGAAGCATaGGATGCCAACTCACCTCTCTTCCGCCATAATGGC | + |
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Preference number: 6 (lower is better) Translates to: LEGPSRPLHFEA*DANSPLFRHNG Trigger: GCCATTATGGCGGAAGAGAGGTGAGTTGGCATCCCATGCTTCAAAGTGAAGGGGCCGGGAGGGCCCCTCCAG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000573385.1 |
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| CDS CCA 72 bp | GTCAGAGCAGAACCAACGCCTGCCTACAAAGATGGCTaGAGGGGCCCTCCCGGCCCCTTCACTTTGAAGCAT | + |
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Preference number: 6 (lower is better) Translates to: VRAEPTPAYKDG*RGPPGPFTLKH Trigger: ATGCTTCAAAGTGAAGGGGCCGGGAGGGCCCCTCCAGCCATCTTTGTAGGCAGGCGTTGGTTCTGCTCTGAC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000573385.1 |
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| CDS TCA 72 bp | CAATATAAGGACGTCTTCCTGACAGCAGCTCTCATTTaGCAGCAAATCCCCTCTAACTGGACCTTCTCGGCA | + |
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Preference number: 6 (lower is better) Translates to: QYKDVFLTAALI*QQIPSNWTFSA Trigger: TGCCGAGAAGGTCCAGTTAGAGGGGATTTGCTGTCAAATGAGAGCTGCTGTCAGGAAGACGTCCTTATATTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000572595.6 |
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| CDS TCA 72 bp | GACTCCTGGATTCTATCCAATATAAGGACGTCTTCCTaGCAGCAGCTCTCATTTGACAGCAAATCCCCTCTA | + |
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Preference number: 6 (lower is better) Translates to: DSWILSNIRTSS*QQLSFDSKSPL Trigger: TAGAGGGGATTTGCTGTCAAATGAGAGCTGCTGTCAGGAAGACGTCCTTATATTGGATAGAATCCAGGAGTC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000572595.6 |
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